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view test-data/test_custom.seq_motifs.meme @ 2:26c64157456b draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 3bd486da76a7a55cc5a57cb88f446a11cbc3826d
author rnateam
date Mon, 11 Dec 2023 18:55:41 +0000
parents 7dd2835ce566
children
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MEME version 5

ALPHABET= ACGT

strands: +

Background letter frequencies
A 0.250000 C 0.250000 G 0.250000 T 0.250000

MOTIF PUM1_1 
letter-probability matrix: alength= 4 w= 7 nsites= 20 E= 0
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.223900  0.184800  0.212700  0.378600 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.835718  0.164282 
 0.041300  0.041200  0.876300  0.041200 

MOTIF PUM1_2 
letter-probability matrix: alength= 4 w= 9 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.500000  0.500000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.500000  0.000000  0.500000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 

MOTIF PUM1_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.919505  0.080495  0.000000  0.000000 
 0.145800  0.458500  0.168500  0.227200 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.100031  0.899969 
 0.867950  0.132050  0.000000  0.000000 

MOTIF PUM2_1 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.397900  0.158200  0.026000  0.417900 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.843493  0.000000  0.000000  0.156507 

MOTIF PUM2_2 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 

MOTIF PUM2_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_4 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_5 
letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 0
 0.253775  0.137486  0.112989  0.495750 
 0.270800  0.141400  0.146600  0.441200 
 0.000000  0.000000  0.000000  1.000000 
 0.072132  0.000000  0.896223  0.031646 
 0.000000  0.000000  0.000000  1.000000 
 0.968974  0.000000  0.031026  0.000000 
 0.232400  0.319800  0.028700  0.419100 
 0.932355  0.000000  0.000000  0.067645 
 0.121986  0.000000  0.173847  0.704167 
 0.517200  0.063500  0.123600  0.295700