Mercurial > repos > rnateam > viennarna_rnaalifold

changeset 5:cccf09a2f521 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit e3c20fec5dafc424d55a4de77304e79e3c88b76b-dirty
author rnateam
date Fri, 22 Sep 2017 09:47:01 -0400
parents 0960096dc963
children 9cc1f04c696b
files rnaalifold.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/rnaalifold.xml	Tue Jul 18 01:45:43 2017 -0400
+++ b/rnaalifold.xml	Fri Sep 22 09:47:01 2017 -0400
@@ -186,7 +186,7 @@
                 <!--	<when value="fromInput"></when> -->
                     <when value="none"></when>
                     <when value="fromFile">
-                        <param name="constraintsFile" type="data" format="*" label="Constraints file"/>
+                        <param name="constraintsFile" type="data" format="txt" label="Constraints file"/>
                         <param name="batch" type="boolean" checked="false" truevalue="--batch" falsevalue="" 
                             label="Use constraints for all alignment records" 
                             help="Usually, constraints provided from input file are only applied to a single sequence alignment. Therefore, RNAalifold will stop its computation and quit after the first input alignment was processed. Using this switch, RNAalifold processes all sequence alignments in the input and applies the same provided constraints to each of them." 
@@ -204,7 +204,7 @@
                         </param>
                         <when value ="isUsed">
                             <repeat name="shape_files" title="Shape File" default="0">
-                                <param type="data" name="shape" format="shape,*" label="Shape file" argument="--shape"/>
+                                <param type="data" name="shape" format="txt" label="Shape file" argument="--shape"/>
                             </repeat>
                                 <param name="m" type="float" value="1.8" label="Slope m" />
                                 <param name="b" type="float" value="-0.6" label="Intercept b" help="Currently, the only data conversion method available is that of to Deigan et al 2009. This method is the default. The slope 'm' and the intercept 'b' can be set to a non−default value if necessary. Otherwise m=1.8 and b=−0.6 as stated in the paper mentioned before."/>