Mercurial > repos > romaingred > pirna_pipeline

changeset 50:d9059a181872 draft

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Uploaded
author romaingred
date Fri, 01 Dec 2017 09:33:09 -0500
parents 71ac58e0d5be
children 6bd3e935d32b
files bin/piPipe.pl
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bin/piPipe.pl	Fri Dec 01 08:54:25 2017 -0500
+++ b/bin/piPipe.pl	Fri Dec 01 09:33:09 2017 -0500
@@ -119,7 +119,7 @@
 	my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq';
 	size_distribution (  $fastq[$child], $fastq_resized, $size_dir, $min, $max );
 
-	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'sam';
+	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'.sam';
 	my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam';
 	my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max;