Mercurial > repos > rplanel > ccqtl_permutations
diff tool-data/ccqtl.loc.sample @ 0:6b6c9ab21674 draft
planemo upload for repository https://gitlab.pasteur.fr/galaxy-team/galaxy-tools/-/tree/master/tools/ccqtl commit 320b3741bd00d1707829822302abe0f0b610981a
| author | rplanel |
|---|---|
| date | Fri, 30 Jun 2023 14:18:58 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/ccqtl.loc.sample Fri Jun 30 14:18:58 2023 +0000 @@ -0,0 +1,7 @@ +# <unique_build_id> <dbkey> <display_name> <build> <doi> <description> <optional_description> <file_base_path> + +# CC_MMnGM indiv_marker CC_MMnGM m38 individual genotypes of each CC mouse at each marker and the funnel codes if applicable. (mega muga and giga muga) tool-data/ccqtl/indiv_marker/CC_MMnGM_ref +# MMnGM_m38 marker_set MMnGM_m38 m38 https://figshare.com/articles/dataset/MMnGM_processed_files_zip/5404762/2 Marker set for mega muga and giga muga tool-data/ccqtl/marker_set/MMnGM_m38 +# MM_m38 marker_set MM_m38 m38 https://figshare.com/articles/dataset/MM_processed_files_zip/5404750/2 Marker set for mega muga tool-data/ccqtl/marker_set/MM_m38 +# cc_variants_m38 cc_variants CC founders variants m38 m38 10.6084/m9.figshare.5280229.v3 DNA seq variants segregating among the founders tool-data/ccqtl/annotations/m38/cc_variants.sqlite +# mouse_genes_mgi_m38 genes Mouse genes mgi m38 m38 10.6084/m9.figshare.5286019.v8 gene annotation, subsetted to MGI annot tool-data/ccqtl/annotations/m38/mouse_genes_mgi.sqlite \ No newline at end of file