Mercurial > repos > rsajulga > group_humann2_uniref_abundances_to_go
changeset 7:530ca330dc45 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/group_humann2_uniref_abundances_to_GO
| author | rsajulga |
|---|---|
| date | Sun, 21 Apr 2019 18:03:30 -0400 |
| parents | 38da4106acfe |
| children | 735de508d790 |
| files | group_humann2_uniref_abundances_to_go.xml |
| diffstat | 1 files changed, 2 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/group_humann2_uniref_abundances_to_go.xml Thu Apr 18 12:00:29 2019 -0400 +++ b/group_humann2_uniref_abundances_to_go.xml Sun Apr 21 18:03:30 2019 -0400 @@ -1,10 +1,8 @@ -<tool id="group_humann2_uniref_abundances_to_go" name="Group abundances" version="1.2.0"> +<tool id="group_humann2_uniref_abundances_to_go" name="Group abundances" version="1.2.1"> <description> of UniRef50 gene families obtained (HUMAnN2 output) to Gene Ontology (GO) slim terms</description> <requirements> <requirement type="package" version="1.9">numpy</requirement> - <requirement type="package" version="0.11.2">humann2</requirement> - <requirement type="package" version="0.6.4">goatools</requirement> <requirement type="package" version="1.2.1">group_humann2_uniref_abundances_to_go</requirement> </requirements> @@ -101,7 +99,7 @@ HUMAnN2 is a pipeline to profile the presence/absence and abundance of microbial pathways in community of microbiota sequencing data. One output is a file with UniRef50 gene family abundances. HUMAnN2 proposes a script to regroup Uniref50 to GO, but used GO terms are too precise to get a broad overview of the ontology content. -The tool described here contains scripts to group UniRef50 abundances obtained using main HUMANn2 script (Gene families) to GO slim terms. GO slim is a subset of the terms in the whole GO. For this tool, metagenomics GO slim terms developed by Jane Lomax and the InterPro group. +The tool described here contains scripts to group UniRef50 abundances obtained using main HUMAnN2 script (Gene families) to GO slim terms. GO slim is a subset of the terms in the whole GO. For this tool, metagenomics GO slim terms developed by Jane Lomax and the InterPro group. More information on `dedicated GitHub repository <https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO>`_.