Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/udocker.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac |
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| date | Mon, 22 Mar 2021 18:12:50 +0000 |
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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1 """Enables Docker software containers via the udocker runtime.""" |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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2 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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3 from typing import List |
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4 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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5 from .docker import DockerCommandLineJob |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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6 |
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7 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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8 class UDockerCommandLineJob(DockerCommandLineJob): |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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9 """Runs a CommandLineJob in a sofware container using the udocker engine.""" |
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10 |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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11 @staticmethod |
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12 def append_volume( |
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13 runtime: List[str], source: str, target: str, writable: bool = False |
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14 ) -> None: |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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15 """Add binding arguments to the runtime list.""" |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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16 runtime.append( |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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17 "--volume={}:{}:{}".format(source, target, "rw" if writable else "ro") |
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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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18 ) |
