Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/cwltool/udocker.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/cwltool/udocker.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,18 @@ +"""Enables Docker software containers via the udocker runtime.""" + +from typing import List + +from .docker import DockerCommandLineJob + + +class UDockerCommandLineJob(DockerCommandLineJob): + """Runs a CommandLineJob in a sofware container using the udocker engine.""" + + @staticmethod + def append_volume( + runtime: List[str], source: str, target: str, writable: bool = False + ) -> None: + """Add binding arguments to the runtime list.""" + runtime.append( + "--volume={}:{}:{}".format(source, target, "rw" if writable else "ro") + )