Mercurial > repos > shellac > sam_consensus_v3
comparison env/lib/python3.9/site-packages/cwltool/udocker.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac |
|---|---|
| date | Mon, 22 Mar 2021 18:12:50 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:4f3585e2f14b |
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| 1 """Enables Docker software containers via the udocker runtime.""" | |
| 2 | |
| 3 from typing import List | |
| 4 | |
| 5 from .docker import DockerCommandLineJob | |
| 6 | |
| 7 | |
| 8 class UDockerCommandLineJob(DockerCommandLineJob): | |
| 9 """Runs a CommandLineJob in a sofware container using the udocker engine.""" | |
| 10 | |
| 11 @staticmethod | |
| 12 def append_volume( | |
| 13 runtime: List[str], source: str, target: str, writable: bool = False | |
| 14 ) -> None: | |
| 15 """Add binding arguments to the runtime list.""" | |
| 16 runtime.append( | |
| 17 "--volume={}:{}:{}".format(source, target, "rw" if writable else "ro") | |
| 18 ) |
