Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/bioblend/galaxy/dataset_collections/__init__.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/bioblend/galaxy/dataset_collections/__init__.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,82 @@ +class HasElements: + + def __init__(self, name, type="list", elements=None): + self.name = name + self.type = type + if isinstance(elements, dict): + self.elements = [dict(name=key, id=value, src="hda") for key, value in elements.values()] + elif elements: + self.elements = elements + + def add(self, element): + self.elements.append(element) + return self + + +class CollectionDescription(HasElements): + + def to_dict(self): + return dict( + name=self.name, + collection_type=self.type, + element_identifiers=[e.to_dict() for e in self.elements] + ) + + +class CollectionElement(HasElements): + + def to_dict(self): + return dict( + src="new_collection", + name=self.name, + collection_type=self.type, + element_identifiers=[e.to_dict() for e in self.elements] + ) + + +class SimpleElement: + + def __init__(self, value): + self.value = value + + def to_dict(self): + return self.value + + +class HistoryDatasetElement(SimpleElement): + + def __init__(self, name, id): + super().__init__(dict( + name=name, + src="hda", + id=id, + )) + + +class HistoryDatasetCollectionElement(SimpleElement): + + def __init__(self, name, id): + super().__init__(dict( + name=name, + src="hdca", + id=id, + )) + + +class LibraryDatasetElement(SimpleElement): + + def __init__(self, name, id): + super().__init__(dict( + name=name, + src="ldda", + id=id, + )) + + +__all__ = ( + "CollectionDescription", + "CollectionElement", + "HistoryDatasetElement", + "HistoryDatasetCollectionElement", + "LibraryDatasetElement", +)