Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/bioblend/galaxy/dataset_collections/__init__.py @ 0:4f3585e2f14b draft default tip
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author | shellac |
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date | Mon, 22 Mar 2021 18:12:50 +0000 |
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1 class HasElements: |
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2 |
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3 def __init__(self, name, type="list", elements=None): |
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4 self.name = name |
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5 self.type = type |
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6 if isinstance(elements, dict): |
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7 self.elements = [dict(name=key, id=value, src="hda") for key, value in elements.values()] |
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8 elif elements: |
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9 self.elements = elements |
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10 |
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11 def add(self, element): |
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12 self.elements.append(element) |
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13 return self |
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14 |
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15 |
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16 class CollectionDescription(HasElements): |
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17 |
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18 def to_dict(self): |
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19 return dict( |
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20 name=self.name, |
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21 collection_type=self.type, |
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22 element_identifiers=[e.to_dict() for e in self.elements] |
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23 ) |
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24 |
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25 |
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26 class CollectionElement(HasElements): |
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27 |
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28 def to_dict(self): |
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29 return dict( |
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30 src="new_collection", |
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31 name=self.name, |
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32 collection_type=self.type, |
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33 element_identifiers=[e.to_dict() for e in self.elements] |
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34 ) |
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35 |
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36 |
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37 class SimpleElement: |
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38 |
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39 def __init__(self, value): |
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40 self.value = value |
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41 |
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42 def to_dict(self): |
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43 return self.value |
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44 |
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45 |
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46 class HistoryDatasetElement(SimpleElement): |
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47 |
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48 def __init__(self, name, id): |
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49 super().__init__(dict( |
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50 name=name, |
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51 src="hda", |
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52 id=id, |
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53 )) |
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54 |
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55 |
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56 class HistoryDatasetCollectionElement(SimpleElement): |
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57 |
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58 def __init__(self, name, id): |
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59 super().__init__(dict( |
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60 name=name, |
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61 src="hdca", |
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62 id=id, |
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63 )) |
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64 |
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65 |
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66 class LibraryDatasetElement(SimpleElement): |
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67 |
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68 def __init__(self, name, id): |
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69 super().__init__(dict( |
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70 name=name, |
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71 src="ldda", |
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72 id=id, |
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73 )) |
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74 |
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75 |
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76 __all__ = ( |
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77 "CollectionDescription", |
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78 "CollectionElement", |
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79 "HistoryDatasetElement", |
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80 "HistoryDatasetCollectionElement", |
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81 "LibraryDatasetElement", |
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82 ) |