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1 Heng Li from the Sanger Institute wrote most of the initial source codes
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2 of SAMtools and various converters.
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3
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4 Bob Handsaker from the Broad Institute is a major contributor to the
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5 SAM/BAM specification. He designed and implemented the BGZF format, the
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6 underlying indexable compression format for the BAM format. BGZF does
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7 not support arithmetic between file offsets.
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8
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9 Jue Ruan for the Beijing Genome Institute designed and implemented the
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10 RAZF format, an alternative indexable compression format. RAZF supports
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11 arithmetic between file offsets, at the cost of increased index file
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12 size and the full compatibility with gzip. RAZF is optional and only
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13 used in `faidx' for indexing RAZF compressed fasta files.
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14
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15 Colin Hercus updated novo2sam.pl to support gapped alignment by
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16 novoalign.
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17
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18 Petr Danecek contributed the header parsing library sam_header.c and
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19 sam2vcf.pl script and added knet support to the RAZF library.
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