Mercurial > repos > tduigou > dnaweaver
changeset 1:c519517e3ade draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
| author | tduigou |
|---|---|
| date | Thu, 03 Feb 2022 15:01:46 +0000 |
| parents | 90025c4cd50e |
| children | 861a7692f473 |
| files | dnaweaver.xml test-data/assembly_plan_lycopene.xlsx |
| diffstat | 2 files changed, 13 insertions(+), 6 deletions(-) [+] |
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--- a/dnaweaver.xml Fri Dec 17 16:26:13 2021 +0000 +++ b/dnaweaver.xml Thu Feb 03 15:01:46 2022 +0000 @@ -1,7 +1,10 @@ -<tool id="DNAWeaver" name="DNA Weaver" version="1.0.1"> +<tool id="dnaweaver" name="DNA Weaver" version="@TOOL_VERSION@" profile="19.09"> <description>Given a SBOL input, calculate assembly parts for Gibson or Golden Gate</description> + <macros> + <token name="@TOOL_VERSION@">1.0.2</token> + </macros> <requirements> - <requirement type="package" version="1.0.1">dnaweaver_synbiocad</requirement> + <requirement type="package" version="@TOOL_VERSION@1">dnaweaver_synbiocad</requirement> </requirements> <stdio> <regex match="WARNING:" level="warning" /> @@ -12,7 +15,7 @@ '$input' output.xlsx '$method' - --constructs '$adv.max_constructs' + --nb_constructs '$adv.max_constructs' && cp output.xlsx '$output' ]]></command> <inputs> @@ -27,13 +30,17 @@ </section> </inputs> <outputs> - <data name="output" format="xlsx" label="Assembly Plan" /> + <data name="output" format="xlsx" label="DNA Weaver - Assembly Plan" /> </outputs> <tests> <test> <!-- test 1: check if identical outputs are produced with default parameters --> <param name="input" value="constructs_lycopene.xml" /> - <output name="output" file="assembly_plan_lycopene.xlsx" ftype="xlsx" compare="sim_size"/> + <output name="output" > + <assert_contents> + <has_size value="77431" delta="100" /> + </assert_contents> + </output> </test> </tests> <help><![CDATA[ @@ -102,7 +109,7 @@ Version ------- -1.0.1 +1.0.2 Authors -------