Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/GRsetFromGEO.R @ 8:5b1a9d86338c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Mon, 12 Jun 2017 13:35:47 -0400
parents c31140daf71f
children 6908c2998731
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
1 require("minfi", quietly = TRUE)
7511130b5068 Uploaded
testtool
parents:
diff changeset
2
7511130b5068 Uploaded
testtool
parents:
diff changeset
3 options(warn = -1)
8
5b1a9d86338c Uploaded
testtool
parents: 7
diff changeset
4 options('download.file.method'='libcurl')
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
5
7511130b5068 Uploaded
testtool
parents:
diff changeset
6 args <- commandArgs(trailingOnly = TRUE)
7511130b5068 Uploaded
testtool
parents:
diff changeset
7 GSE = args[1]
7511130b5068 Uploaded
testtool
parents:
diff changeset
8 output = args[2]
7511130b5068 Uploaded
testtool
parents:
diff changeset
9
7511130b5068 Uploaded
testtool
parents:
diff changeset
10 GRset <- getGenomicRatioSetFromGEO(GSE)
7511130b5068 Uploaded
testtool
parents:
diff changeset
11
7511130b5068 Uploaded
testtool
parents:
diff changeset
12 save(GRset,file = output)