Mercurial > repos > testtool > get_gr_set
view GRsetFromGEO/GRsetFromGEO.R @ 63:ddd126dbb19a draft default tip
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author | testtool |
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date | Thu, 11 Jan 2018 12:58:58 -0500 |
parents | 2382697aad09 |
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require(minfi, quietly = TRUE) require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE) options('GEOquery.inmemory.gpl'=TRUE) options('download.file.method.GEOquery' = 'libcurl') options(warn = -1) args <- commandArgs(trailingOnly = TRUE) input = args[1] output = args[2] GRset <- getGenomicRatioSetFromGEO(input) save(GRset, file = output)