Mercurial > repos > thomaswollmann > binary2labelimage
annotate binary2label.xml @ 2:8f98926130d9 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
author | thomaswollmann |
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date | Wed, 12 Dec 2018 04:36:44 -0500 |
parents | f772af27a6de |
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f772af27a6de
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 7c8ef45ea41aa832628cfd1d2931992a2340d7b7
thomaswollmann
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1 <tool id="binary2labelimage" name="Binary 2 Label" version="0.2"> |
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668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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2 <description>Converts Binary to Label Image</description> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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3 <requirements> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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4 <requirement type="package" version="0.12.3" >scikit-image</requirement> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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5 </requirements> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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6 <command> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
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7 <![CDATA[ |
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f772af27a6de
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 7c8ef45ea41aa832628cfd1d2931992a2340d7b7
thomaswollmann
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8 python '$__tool_directory__/binary2label.py' '$input' '$output' |
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668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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9 ]]> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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10 </command> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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11 <inputs> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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12 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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13 </inputs> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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14 <outputs> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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15 <data format="tiff" name="output"/> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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16 </outputs> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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17 <tests> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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18 <test> |
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f772af27a6de
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 7c8ef45ea41aa832628cfd1d2931992a2340d7b7
thomaswollmann
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19 <param name="input" value="galaxyIcon_noText.tif" /> |
f772af27a6de
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 7c8ef45ea41aa832628cfd1d2931992a2340d7b7
thomaswollmann
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20 <output name="output" value="label.tif" ftype="tiff" /> |
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668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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21 </test> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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22 </tests> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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23 <help>This tool assigns every object an own grey value.</help> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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24 <citations> |
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8f98926130d9
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit a0ba841e8b3aee770a3243155bedfac0adf9a5a6
thomaswollmann
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25 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> |
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668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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26 </citations> |
668f8dabb346
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\binary2labelimage commit 77f1ea5beca40d8b5851fe366e84c32d5df5d6f8
thomaswollmann
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27 </tool> |