Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison orthologs/ucsb_hamster/lib/wisecfg/pombe.gf @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
| author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
|---|---|
| date | Tue, 11 Mar 2014 12:19:13 -0700 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:5b9a38ec4a39 |
|---|---|
| 1 # Splice sites and intron regions information for GeneWise-21 | |
| 2 # Fri May 15 13:20:38 IDT 1998 | |
| 3 # Created by Mor Amitai (mor@compugen.co.il) | |
| 4 # dataset : ~/ftp/pub/PomBase/temp/cds_cdna ~/ftp/pub/PomBase/temp/cds_ex | |
| 5 # Consensi are read from top down. The value, for a sequence, | |
| 6 # is the number in the line of the first consensus that | |
| 7 # matches the sequence. | |
| 8 # Note: the set of sequences that are represented by a consensus | |
| 9 # are all the sequences that match this consensus and none of the | |
| 10 # previous consensi | |
| 11 # | |
| 12 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of | |
| 13 # occurrences of each sequence in the database. | |
| 14 # In case of a consensus this is the number of occurrences of sequences | |
| 15 # that are represented by the consensus in the database divided by the | |
| 16 # number of sequences that are represented by the consensus. | |
| 17 # *stay_prob is the probability of the transition from the state to itself. | |
| 18 # No_Spacer_Prob is the probability of transition from Pyrimidine directly | |
| 19 # to 3SS (no spacer). | |
| 20 type 5SS | |
| 21 center 3 | |
| 22 phase all | |
| 23 begin consensus | |
| 24 ---GTA-GT- 0.0869141 | |
| 25 ---GT----- 0.000821553 | |
| 26 end consensus | |
| 27 type 5SS | |
| 28 center 3 | |
| 29 phase 0 | |
| 30 begin consensus | |
| 31 ---GTA-GT- 0.0371094 | |
| 32 ---GT----- 0.000356523 | |
| 33 end consensus | |
| 34 type 5SS | |
| 35 center 3 | |
| 36 phase 1 | |
| 37 begin consensus | |
| 38 ---GTA-GT- 0.0292969 | |
| 39 ---GT----- 0.000294519 | |
| 40 end consensus | |
| 41 type 5SS | |
| 42 center 3 | |
| 43 phase 2 | |
| 44 begin consensus | |
| 45 ---GT----- 0.000488281 | |
| 46 end consensus | |
| 47 type 5SS_codon | |
| 48 phase all | |
| 49 begin consensus | |
| 50 AAA 1.864078 | |
| 51 AAC 0.621359 | |
| 52 AAG 6.524272 | |
| 53 AAT 1.864078 | |
| 54 AAN 2.71845 | |
| 55 ACA 0.932039 | |
| 56 ACC 0.310680 | |
| 57 ACG 1.553398 | |
| 58 ACT 0.932039 | |
| 59 ACN 0.932039 | |
| 60 AGA 1.553398 | |
| 61 AGC 0.310680 | |
| 62 AGG 1.553398 | |
| 63 AGT 1.864078 | |
| 64 AGN 1.32039 | |
| 65 ATA 0.932039 | |
| 66 ATC 0.621359 | |
| 67 ATG 2.796117 | |
| 68 ATT 1.553398 | |
| 69 ATN 1.47573 | |
| 70 ANA 1.32039 | |
| 71 ANC 0.46602 | |
| 72 ANG 3.1068 | |
| 73 ANT 1.5534 | |
| 74 ANN 1.61165 | |
| 75 CAA 1.242718 | |
| 76 CAC 0.310680 | |
| 77 CAG 3.417476 | |
| 78 CAT 0.621359 | |
| 79 CAN 1.39806 | |
| 80 CCA 0.310680 | |
| 81 CCC 0.310680 | |
| 82 CCG 0.621359 | |
| 83 CCT 0.310680 | |
| 84 CCN 0.38835 | |
| 85 CGA 0.621359 | |
| 86 CGC 0.310680 | |
| 87 CGG 1.242718 | |
| 88 CGT 0.310680 | |
| 89 CGN 0.621359 | |
| 90 CTA 0.310680 | |
| 91 CTC 0.310680 | |
| 92 CTG 1.864078 | |
| 93 CTT 0.621359 | |
| 94 CTN 0.776699 | |
| 95 CNA 0.621359 | |
| 96 CNC 0.31068 | |
| 97 CNG 1.78641 | |
| 98 CNT 0.46602 | |
| 99 CNN 0.796117 | |
| 100 GAA 0.310680 | |
| 101 GAC 0.621359 | |
| 102 GAG 3.106796 | |
| 103 GAT 1.242718 | |
| 104 GAN 1.32039 | |
| 105 GCA 0.621359 | |
| 106 GCC 0.621359 | |
| 107 GCG 0.310680 | |
| 108 GCT 0.621359 | |
| 109 GCN 0.543689 | |
| 110 GGA 0.310680 | |
| 111 GGC 0.310680 | |
| 112 GGG 0.310680 | |
| 113 GGT 0.310680 | |
| 114 GGN 0.31068 | |
| 115 GTA 0.310680 | |
| 116 GTC 0.310680 | |
| 117 GTG 0.932039 | |
| 118 GTT 0.310680 | |
| 119 GTN 0.46602 | |
| 120 GNA 0.38835 | |
| 121 GNC 0.46602 | |
| 122 GNG 1.16505 | |
| 123 GNT 0.621359 | |
| 124 GNN 0.660194 | |
| 125 TAA 0.621359 | |
| 126 TAC 0.932039 | |
| 127 TAG 0.932039 | |
| 128 TAT 0.621359 | |
| 129 TAN 0.776699 | |
| 130 TCA 0.621359 | |
| 131 TCC 0.310680 | |
| 132 TCG 0.621359 | |
| 133 TCT 0.932039 | |
| 134 TCN 0.621359 | |
| 135 TGA 0.621359 | |
| 136 TGC 0.621359 | |
| 137 TGG 1.242718 | |
| 138 TGT 0.621359 | |
| 139 TGN 0.776699 | |
| 140 TTA 0.621359 | |
| 141 TTC 0.621359 | |
| 142 TTG 3.106796 | |
| 143 TTT 1.864078 | |
| 144 TTN 1.5534 | |
| 145 TNA 0.621359 | |
| 146 TNC 0.621359 | |
| 147 TNG 1.47573 | |
| 148 TNT 1.00971 | |
| 149 TNN 0.932039 | |
| 150 NAA 1.00971 | |
| 151 NAC 0.621359 | |
| 152 NAG 3.49515 | |
| 153 NAT 1.08738 | |
| 154 NAN 1.5534 | |
| 155 NCA 0.621359 | |
| 156 NCC 0.38835 | |
| 157 NCG 0.776699 | |
| 158 NCT 0.699029 | |
| 159 NCN 0.621359 | |
| 160 NGA 0.776699 | |
| 161 NGC 0.38835 | |
| 162 NGG 1.08738 | |
| 163 NGT 0.776699 | |
| 164 NGN 0.757282 | |
| 165 NTA 0.543689 | |
| 166 NTC 0.46602 | |
| 167 NTG 2.17476 | |
| 168 NTT 1.08738 | |
| 169 NTN 1.06796 | |
| 170 NNA 0.737864 | |
| 171 NNC 0.46602 | |
| 172 NNG 1.8835 | |
| 173 NNT 0.912621 | |
| 174 NNN 1 | |
| 175 end consensus | |
| 176 type 5SS_codon | |
| 177 phase 0 | |
| 178 begin consensus | |
| 179 AAA 0.512000 | |
| 180 AAC 0.512000 | |
| 181 AAG 6.144000 | |
| 182 AAT 1.536000 | |
| 183 AAN 2.176 | |
| 184 ACA 1.024000 | |
| 185 ACC 0.512000 | |
| 186 ACG 0.512000 | |
| 187 ACT 0.512000 | |
| 188 ACN 0.64 | |
| 189 AGA 0.512000 | |
| 190 AGC 0.512000 | |
| 191 AGG 1.536000 | |
| 192 AGT 1.024000 | |
| 193 AGN 0.896 | |
| 194 ATA 0.512000 | |
| 195 ATC 0.512000 | |
| 196 ATG 2.048000 | |
| 197 ATT 1.536000 | |
| 198 ATN 1.152 | |
| 199 ANA 0.64 | |
| 200 ANC 0.512 | |
| 201 ANG 2.56 | |
| 202 ANT 1.152 | |
| 203 ANN 1.216 | |
| 204 CAA 1.024000 | |
| 205 CAC 0.512000 | |
| 206 CAG 4.608000 | |
| 207 CAT 1.024000 | |
| 208 CAN 1.792 | |
| 209 CCA 0.512000 | |
| 210 CCC 0.512000 | |
| 211 CCG 1.024000 | |
| 212 CCT 0.512000 | |
| 213 CCN 0.64 | |
| 214 CGA 0.512000 | |
| 215 CGC 0.512000 | |
| 216 CGG 1.024000 | |
| 217 CGT 0.512000 | |
| 218 CGN 0.64 | |
| 219 CTA 0.512000 | |
| 220 CTC 0.512000 | |
| 221 CTG 1.536000 | |
| 222 CTT 1.024000 | |
| 223 CTN 0.896 | |
| 224 CNA 0.64 | |
| 225 CNC 0.512 | |
| 226 CNG 2.048 | |
| 227 CNT 0.768 | |
| 228 CNN 0.992 | |
| 229 GAA 0.512000 | |
| 230 GAC 0.512000 | |
| 231 GAG 4.096000 | |
| 232 GAT 1.536000 | |
| 233 GAN 1.664 | |
| 234 GCA 1.024000 | |
| 235 GCC 1.024000 | |
| 236 GCG 0.512000 | |
| 237 GCT 1.024000 | |
| 238 GCN 0.896 | |
| 239 GGA 0.512000 | |
| 240 GGC 0.512000 | |
| 241 GGG 0.512000 | |
| 242 GGT 0.512000 | |
| 243 GGN 0.512 | |
| 244 GTA 0.512000 | |
| 245 GTC 0.512000 | |
| 246 GTG 1.536000 | |
| 247 GTT 0.512000 | |
| 248 GTN 0.768 | |
| 249 GNA 0.64 | |
| 250 GNC 0.64 | |
| 251 GNG 1.664 | |
| 252 GNT 0.896 | |
| 253 GNN 0.96 | |
| 254 TAA 0.512000 | |
| 255 TAC 1.536000 | |
| 256 TAG 0.512000 | |
| 257 TAT 0.512000 | |
| 258 TAN 0.768 | |
| 259 TCA 0.512000 | |
| 260 TCC 0.512000 | |
| 261 TCG 0.512000 | |
| 262 TCT 1.536000 | |
| 263 TCN 0.768 | |
| 264 TGA 0.512000 | |
| 265 TGC 0.512000 | |
| 266 TGG 0.512000 | |
| 267 TGT 0.512000 | |
| 268 TGN 0.512 | |
| 269 TTA 1.024000 | |
| 270 TTC 0.512000 | |
| 271 TTG 2.048000 | |
| 272 TTT 1.536000 | |
| 273 TTN 1.28 | |
| 274 TNA 0.64 | |
| 275 TNC 0.768 | |
| 276 TNG 0.896 | |
| 277 TNT 1.024 | |
| 278 TNN 0.832 | |
| 279 NAA 0.64 | |
| 280 NAC 0.768 | |
| 281 NAG 3.84 | |
| 282 NAT 1.152 | |
| 283 NAN 1.6 | |
| 284 NCA 0.768 | |
| 285 NCC 0.64 | |
| 286 NCG 0.64 | |
| 287 NCT 0.896 | |
| 288 NCN 0.736 | |
| 289 NGA 0.512 | |
| 290 NGC 0.512 | |
| 291 NGG 0.896 | |
| 292 NGT 0.64 | |
| 293 NGN 0.64 | |
| 294 NTA 0.64 | |
| 295 NTC 0.512 | |
| 296 NTG 1.792 | |
| 297 NTT 1.152 | |
| 298 NTN 1.024 | |
| 299 NNA 0.64 | |
| 300 NNC 0.608 | |
| 301 NNG 1.792 | |
| 302 NNT 0.96 | |
| 303 NNN 1 | |
| 304 end consensus | |
| 305 type 5SS_codon | |
| 306 phase 1 | |
| 307 begin consensus | |
| 308 AAA 1.699115 | |
| 309 AAC 0.566372 | |
| 310 AAG 3.964602 | |
| 311 AAT 1.132743 | |
| 312 AAN 1.84071 | |
| 313 ACA 1.132743 | |
| 314 ACC 0.566372 | |
| 315 ACG 2.265487 | |
| 316 ACT 1.699115 | |
| 317 ACN 1.41593 | |
| 318 AGA 1.132743 | |
| 319 AGC 0.566372 | |
| 320 AGG 1.699115 | |
| 321 AGT 1.132743 | |
| 322 AGN 1.13274 | |
| 323 ATA 1.699115 | |
| 324 ATC 1.132743 | |
| 325 ATG 2.831858 | |
| 326 ATT 1.699115 | |
| 327 ATN 1.84071 | |
| 328 ANA 1.41593 | |
| 329 ANC 0.707965 | |
| 330 ANG 2.69027 | |
| 331 ANT 1.41593 | |
| 332 ANN 1.55752 | |
| 333 CAA 1.132743 | |
| 334 CAC 0.566372 | |
| 335 CAG 1.132743 | |
| 336 CAT 0.566372 | |
| 337 CAN 0.849557 | |
| 338 CCA 0.566372 | |
| 339 CCC 0.566372 | |
| 340 CCG 0.566372 | |
| 341 CCT 0.566372 | |
| 342 CCN 0.566372 | |
| 343 CGA 0.566372 | |
| 344 CGC 0.566372 | |
| 345 CGG 1.699115 | |
| 346 CGT 0.566372 | |
| 347 CGN 0.849558 | |
| 348 CTA 0.566372 | |
| 349 CTC 0.566372 | |
| 350 CTG 2.265487 | |
| 351 CTT 0.566372 | |
| 352 CTN 0.991151 | |
| 353 CNA 0.707965 | |
| 354 CNC 0.566372 | |
| 355 CNG 1.41593 | |
| 356 CNT 0.566372 | |
| 357 CNN 0.814159 | |
| 358 GAA 0.566372 | |
| 359 GAC 1.132743 | |
| 360 GAG 1.699115 | |
| 361 GAT 0.566372 | |
| 362 GAN 0.99115 | |
| 363 GCA 0.566372 | |
| 364 GCC 0.566372 | |
| 365 GCG 0.566372 | |
| 366 GCT 0.566372 | |
| 367 GCN 0.566372 | |
| 368 GGA 0.566372 | |
| 369 GGC 0.566372 | |
| 370 GGG 0.566372 | |
| 371 GGT 0.566372 | |
| 372 GGN 0.566372 | |
| 373 GTA 0.566372 | |
| 374 GTC 0.566372 | |
| 375 GTG 0.566372 | |
| 376 GTT 0.566372 | |
| 377 GTN 0.566372 | |
| 378 GNA 0.566372 | |
| 379 GNC 0.707965 | |
| 380 GNG 0.849558 | |
| 381 GNT 0.566372 | |
| 382 GNN 0.672567 | |
| 383 TAA 0.566372 | |
| 384 TAC 0.566372 | |
| 385 TAG 0.566372 | |
| 386 TAT 1.132743 | |
| 387 TAN 0.707965 | |
| 388 TCA 0.566372 | |
| 389 TCC 0.566372 | |
| 390 TCG 0.566372 | |
| 391 TCT 0.566372 | |
| 392 TCN 0.566372 | |
| 393 TGA 0.566372 | |
| 394 TGC 0.566372 | |
| 395 TGG 1.699115 | |
| 396 TGT 0.566372 | |
| 397 TGN 0.849558 | |
| 398 TTA 0.566372 | |
| 399 TTC 0.566372 | |
| 400 TTG 3.964602 | |
| 401 TTT 1.699115 | |
| 402 TTN 1.69912 | |
| 403 TNA 0.566372 | |
| 404 TNC 0.566372 | |
| 405 TNG 1.69912 | |
| 406 TNT 0.99115 | |
| 407 TNN 0.955752 | |
| 408 NAA 0.99115 | |
| 409 NAC 0.707965 | |
| 410 NAG 1.84071 | |
| 411 NAT 0.849557 | |
| 412 NAN 1.09735 | |
| 413 NCA 0.707965 | |
| 414 NCC 0.566372 | |
| 415 NCG 0.991151 | |
| 416 NCT 0.849558 | |
| 417 NCN 0.778761 | |
| 418 NGA 0.707965 | |
| 419 NGC 0.566372 | |
| 420 NGG 1.41593 | |
| 421 NGT 0.707965 | |
| 422 NGN 0.849558 | |
| 423 NTA 0.849558 | |
| 424 NTC 0.707965 | |
| 425 NTG 2.40708 | |
| 426 NTT 1.13274 | |
| 427 NTN 1.27434 | |
| 428 NNA 0.814159 | |
| 429 NNC 0.637168 | |
| 430 NNG 1.66372 | |
| 431 NNT 0.884956 | |
| 432 NNN 1 | |
| 433 end consensus | |
| 434 type 5SS_codon | |
| 435 phase 2 | |
| 436 begin consensus | |
| 437 AAA 2.666667 | |
| 438 AAC 1.333333 | |
| 439 AAG 2.666667 | |
| 440 AAT 2.000000 | |
| 441 AAN 2.16667 | |
| 442 ACA 0.666667 | |
| 443 ACC 0.666667 | |
| 444 ACG 1.333333 | |
| 445 ACT 0.666667 | |
| 446 ACN 0.833334 | |
| 447 AGA 2.666667 | |
| 448 AGC 0.666667 | |
| 449 AGG 0.666667 | |
| 450 AGT 2.666667 | |
| 451 AGN 1.66667 | |
| 452 ATA 0.666667 | |
| 453 ATC 0.666667 | |
| 454 ATG 1.333333 | |
| 455 ATT 0.666667 | |
| 456 ATN 0.833334 | |
| 457 ANA 1.66667 | |
| 458 ANC 0.833333 | |
| 459 ANG 1.5 | |
| 460 ANT 1.5 | |
| 461 ANN 1.375 | |
| 462 CAA 1.333333 | |
| 463 CAC 0.666667 | |
| 464 CAG 1.333333 | |
| 465 CAT 0.666667 | |
| 466 CAN 1 | |
| 467 CCA 0.666667 | |
| 468 CCC 0.666667 | |
| 469 CCG 0.666667 | |
| 470 CCT 0.666667 | |
| 471 CCN 0.666667 | |
| 472 CGA 1.333333 | |
| 473 CGC 0.666667 | |
| 474 CGG 0.666667 | |
| 475 CGT 0.666667 | |
| 476 CGN 0.833333 | |
| 477 CTA 0.666667 | |
| 478 CTC 0.666667 | |
| 479 CTG 0.666667 | |
| 480 CTT 0.666667 | |
| 481 CTN 0.666667 | |
| 482 CNA 1 | |
| 483 CNC 0.666667 | |
| 484 CNG 0.833333 | |
| 485 CNT 0.666667 | |
| 486 CNN 0.791667 | |
| 487 GAA 0.666667 | |
| 488 GAC 0.666667 | |
| 489 GAG 0.666667 | |
| 490 GAT 1.333333 | |
| 491 GAN 0.833334 | |
| 492 GCA 0.666667 | |
| 493 GCC 0.666667 | |
| 494 GCG 0.666667 | |
| 495 GCT 0.666667 | |
| 496 GCN 0.666667 | |
| 497 GGA 0.666667 | |
| 498 GGC 0.666667 | |
| 499 GGG 0.666667 | |
| 500 GGT 0.666667 | |
| 501 GGN 0.666667 | |
| 502 GTA 0.666667 | |
| 503 GTC 0.666667 | |
| 504 GTG 0.666667 | |
| 505 GTT 0.666667 | |
| 506 GTN 0.666667 | |
| 507 GNA 0.666667 | |
| 508 GNC 0.666667 | |
| 509 GNG 0.666667 | |
| 510 GNT 0.833333 | |
| 511 GNN 0.708334 | |
| 512 TAA 1.333333 | |
| 513 TAC 0.666667 | |
| 514 TAG 2.000000 | |
| 515 TAT 0.666667 | |
| 516 TAN 1.16667 | |
| 517 TCA 1.333333 | |
| 518 TCC 0.666667 | |
| 519 TCG 1.333333 | |
| 520 TCT 0.666667 | |
| 521 TCN 1 | |
| 522 TGA 1.333333 | |
| 523 TGC 1.333333 | |
| 524 TGG 1.333333 | |
| 525 TGT 1.333333 | |
| 526 TGN 1.33333 | |
| 527 TTA 0.666667 | |
| 528 TTC 1.333333 | |
| 529 TTG 0.666667 | |
| 530 TTT 1.333333 | |
| 531 TTN 1 | |
| 532 TNA 1.16667 | |
| 533 TNC 1 | |
| 534 TNG 1.33333 | |
| 535 TNT 1 | |
| 536 TNN 1.125 | |
| 537 NAA 1.5 | |
| 538 NAC 0.833333 | |
| 539 NAG 1.66667 | |
| 540 NAT 1.16667 | |
| 541 NAN 1.29167 | |
| 542 NCA 0.833334 | |
| 543 NCC 0.666667 | |
| 544 NCG 1 | |
| 545 NCT 0.666667 | |
| 546 NCN 0.791667 | |
| 547 NGA 1.5 | |
| 548 NGC 0.833334 | |
| 549 NGG 0.833334 | |
| 550 NGT 1.33333 | |
| 551 NGN 1.125 | |
| 552 NTA 0.666667 | |
| 553 NTC 0.833334 | |
| 554 NTG 0.833333 | |
| 555 NTT 0.833334 | |
| 556 NTN 0.791667 | |
| 557 NNA 1.125 | |
| 558 NNC 0.791667 | |
| 559 NNG 1.08333 | |
| 560 NNT 1 | |
| 561 NNN 1 | |
| 562 end consensus | |
| 563 type 3SS | |
| 564 center 3 | |
| 565 phase all | |
| 566 begin consensus | |
| 567 TAG--- 1.64062 | |
| 568 -AG--- 0.229167 | |
| 569 end consensus | |
| 570 type 3SS | |
| 571 center 3 | |
| 572 phase 0 | |
| 573 begin consensus | |
| 574 TAG--- 0.765625 | |
| 575 -AG--- 0.09375 | |
| 576 end consensus | |
| 577 type 3SS | |
| 578 center 3 | |
| 579 phase 1 | |
| 580 begin consensus | |
| 581 TAG--- 0.515625 | |
| 582 -AG--- 0.0885417 | |
| 583 end consensus | |
| 584 type 3SS | |
| 585 center 3 | |
| 586 phase 2 | |
| 587 begin consensus | |
| 588 -AG--- 0.125 | |
| 589 end consensus | |
| 590 type 3SS_codon | |
| 591 phase all | |
| 592 begin consensus | |
| 593 AAA 1.802817 | |
| 594 AAC 1.502347 | |
| 595 AAG 0.300469 | |
| 596 AAT 1.802817 | |
| 597 AAN 1.35211 | |
| 598 ACA 0.300469 | |
| 599 ACC 1.802817 | |
| 600 ACG 0.300469 | |
| 601 ACT 0.901408 | |
| 602 ACN 0.826291 | |
| 603 AGA 0.600939 | |
| 604 AGC 0.300469 | |
| 605 AGG 0.600939 | |
| 606 AGT 1.502347 | |
| 607 AGN 0.751173 | |
| 608 ATA 1.502347 | |
| 609 ATC 2.103286 | |
| 610 ATG 1.502347 | |
| 611 ATT 2.103286 | |
| 612 ATN 1.80282 | |
| 613 ANA 1.05164 | |
| 614 ANC 1.42723 | |
| 615 ANG 0.676056 | |
| 616 ANT 1.57746 | |
| 617 ANN 1.1831 | |
| 618 CAA 2.103286 | |
| 619 CAC 0.300469 | |
| 620 CAG 0.300469 | |
| 621 CAT 1.201878 | |
| 622 CAN 0.976526 | |
| 623 CCA 0.600939 | |
| 624 CCC 0.600939 | |
| 625 CCG 0.901408 | |
| 626 CCT 0.600939 | |
| 627 CCN 0.676056 | |
| 628 CGA 0.300469 | |
| 629 CGC 0.300469 | |
| 630 CGG 0.300469 | |
| 631 CGT 0.901408 | |
| 632 CGN 0.450704 | |
| 633 CTA 0.901408 | |
| 634 CTC 0.600939 | |
| 635 CTG 1.201878 | |
| 636 CTT 1.201878 | |
| 637 CTN 0.976526 | |
| 638 CNA 0.976526 | |
| 639 CNC 0.450704 | |
| 640 CNG 0.676056 | |
| 641 CNT 0.976526 | |
| 642 CNN 0.769953 | |
| 643 GAA 1.802817 | |
| 644 GAC 0.300469 | |
| 645 GAG 1.201878 | |
| 646 GAT 2.403756 | |
| 647 GAN 1.42723 | |
| 648 GCA 0.901408 | |
| 649 GCC 0.300469 | |
| 650 GCG 1.201878 | |
| 651 GCT 1.502347 | |
| 652 GCN 0.976526 | |
| 653 GGA 0.901408 | |
| 654 GGC 0.600939 | |
| 655 GGG 0.600939 | |
| 656 GGT 1.201878 | |
| 657 GGN 0.826291 | |
| 658 GTA 1.201878 | |
| 659 GTC 1.502347 | |
| 660 GTG 0.600939 | |
| 661 GTT 1.502347 | |
| 662 GTN 1.20188 | |
| 663 GNA 1.20188 | |
| 664 GNC 0.676056 | |
| 665 GNG 0.901408 | |
| 666 GNT 1.65258 | |
| 667 GNN 1.10798 | |
| 668 TAA 0.600939 | |
| 669 TAC 0.300469 | |
| 670 TAG 0.300469 | |
| 671 TAT 1.502347 | |
| 672 TAN 0.676056 | |
| 673 TCA 1.201878 | |
| 674 TCC 0.901408 | |
| 675 TCG 0.901408 | |
| 676 TCT 1.201878 | |
| 677 TCN 1.05164 | |
| 678 TGA 0.300469 | |
| 679 TGC 0.300469 | |
| 680 TGG 0.901408 | |
| 681 TGT 1.502347 | |
| 682 TGN 0.751173 | |
| 683 TTA 0.600939 | |
| 684 TTC 0.600939 | |
| 685 TTG 1.201878 | |
| 686 TTT 2.704225 | |
| 687 TTN 1.277 | |
| 688 TNA 0.676056 | |
| 689 TNC 0.525821 | |
| 690 TNG 0.826291 | |
| 691 TNT 1.7277 | |
| 692 TNN 0.938967 | |
| 693 NAA 1.57746 | |
| 694 NAC 0.600939 | |
| 695 NAG 0.525821 | |
| 696 NAT 1.7277 | |
| 697 NAN 1.10798 | |
| 698 NCA 0.751173 | |
| 699 NCC 0.901408 | |
| 700 NCG 0.826291 | |
| 701 NCT 1.05164 | |
| 702 NCN 0.882629 | |
| 703 NGA 0.525821 | |
| 704 NGC 0.375587 | |
| 705 NGG 0.600939 | |
| 706 NGT 1.277 | |
| 707 NGN 0.694835 | |
| 708 NTA 1.05164 | |
| 709 NTC 1.20188 | |
| 710 NTG 1.12676 | |
| 711 NTT 1.87793 | |
| 712 NTN 1.31455 | |
| 713 NNA 0.976526 | |
| 714 NNC 0.769953 | |
| 715 NNG 0.769953 | |
| 716 NNT 1.48357 | |
| 717 NNN 1 | |
| 718 end consensus | |
| 719 type 3SS_codon | |
| 720 phase 0 | |
| 721 begin consensus | |
| 722 AAA 1.465649 | |
| 723 AAC 1.465649 | |
| 724 AAG 0.488550 | |
| 725 AAT 1.954198 | |
| 726 AAN 1.34351 | |
| 727 ACA 0.488550 | |
| 728 ACC 1.954198 | |
| 729 ACG 0.488550 | |
| 730 ACT 0.977099 | |
| 731 ACN 0.977099 | |
| 732 AGA 0.488550 | |
| 733 AGC 0.488550 | |
| 734 AGG 0.488550 | |
| 735 AGT 1.954198 | |
| 736 AGN 0.854962 | |
| 737 ATA 1.465649 | |
| 738 ATC 0.488550 | |
| 739 ATG 0.977099 | |
| 740 ATT 1.465649 | |
| 741 ATN 1.09924 | |
| 742 ANA 0.9771 | |
| 743 ANC 1.09924 | |
| 744 ANG 0.610687 | |
| 745 ANT 1.58779 | |
| 746 ANN 1.0687 | |
| 747 CAA 2.931298 | |
| 748 CAC 0.488550 | |
| 749 CAG 0.488550 | |
| 750 CAT 0.977099 | |
| 751 CAN 1.22137 | |
| 752 CCA 0.977099 | |
| 753 CCC 0.488550 | |
| 754 CCG 0.488550 | |
| 755 CCT 0.977099 | |
| 756 CCN 0.732824 | |
| 757 CGA 0.488550 | |
| 758 CGC 0.488550 | |
| 759 CGG 0.488550 | |
| 760 CGT 0.488550 | |
| 761 CGN 0.48855 | |
| 762 CTA 1.465649 | |
| 763 CTC 0.977099 | |
| 764 CTG 0.488550 | |
| 765 CTT 0.977099 | |
| 766 CTN 0.977099 | |
| 767 CNA 1.46565 | |
| 768 CNC 0.610687 | |
| 769 CNG 0.48855 | |
| 770 CNT 0.854962 | |
| 771 CNN 0.854962 | |
| 772 GAA 1.954198 | |
| 773 GAC 0.488550 | |
| 774 GAG 0.977099 | |
| 775 GAT 2.931298 | |
| 776 GAN 1.58779 | |
| 777 GCA 0.977099 | |
| 778 GCC 0.488550 | |
| 779 GCG 0.977099 | |
| 780 GCT 0.488550 | |
| 781 GCN 0.732824 | |
| 782 GGA 0.488550 | |
| 783 GGC 0.977099 | |
| 784 GGG 0.977099 | |
| 785 GGT 1.465649 | |
| 786 GGN 0.977099 | |
| 787 GTA 1.465649 | |
| 788 GTC 0.977099 | |
| 789 GTG 0.488550 | |
| 790 GTT 1.465649 | |
| 791 GTN 1.09924 | |
| 792 GNA 1.22137 | |
| 793 GNC 0.732824 | |
| 794 GNG 0.854962 | |
| 795 GNT 1.58779 | |
| 796 GNN 1.09924 | |
| 797 TAA 0.488550 | |
| 798 TAC 0.488550 | |
| 799 TAG 0.488550 | |
| 800 TAT 0.977099 | |
| 801 TAN 0.610687 | |
| 802 TCA 1.465649 | |
| 803 TCC 1.465649 | |
| 804 TCG 0.977099 | |
| 805 TCT 1.954198 | |
| 806 TCN 1.46565 | |
| 807 TGA 0.488550 | |
| 808 TGC 0.488550 | |
| 809 TGG 0.977099 | |
| 810 TGT 0.488550 | |
| 811 TGN 0.610687 | |
| 812 TTA 0.977099 | |
| 813 TTC 0.488550 | |
| 814 TTG 0.488550 | |
| 815 TTT 2.931298 | |
| 816 TTN 1.22137 | |
| 817 TNA 0.854962 | |
| 818 TNC 0.732825 | |
| 819 TNG 0.732824 | |
| 820 TNT 1.58779 | |
| 821 TNN 0.977099 | |
| 822 NAA 1.70992 | |
| 823 NAC 0.732825 | |
| 824 NAG 0.610687 | |
| 825 NAT 1.70992 | |
| 826 NAN 1.19084 | |
| 827 NCA 0.977099 | |
| 828 NCC 1.09924 | |
| 829 NCG 0.732824 | |
| 830 NCT 1.09924 | |
| 831 NCN 0.977099 | |
| 832 NGA 0.48855 | |
| 833 NGC 0.610687 | |
| 834 NGG 0.732824 | |
| 835 NGT 1.09924 | |
| 836 NGN 0.732825 | |
| 837 NTA 1.34351 | |
| 838 NTC 0.732824 | |
| 839 NTG 0.610687 | |
| 840 NTT 1.70992 | |
| 841 NTN 1.09924 | |
| 842 NNA 1.12977 | |
| 843 NNC 0.793893 | |
| 844 NNG 0.671756 | |
| 845 NNT 1.40458 | |
| 846 NNN 1 | |
| 847 end consensus | |
| 848 type 3SS_codon | |
| 849 phase 1 | |
| 850 begin consensus | |
| 851 AAA 1.684211 | |
| 852 AAC 1.122807 | |
| 853 AAG 0.561404 | |
| 854 AAT 1.684211 | |
| 855 AAN 1.26316 | |
| 856 ACA 0.561404 | |
| 857 ACC 1.684211 | |
| 858 ACG 0.561404 | |
| 859 ACT 0.561404 | |
| 860 ACN 0.842106 | |
| 861 AGA 1.122807 | |
| 862 AGC 0.561404 | |
| 863 AGG 1.122807 | |
| 864 AGT 0.561404 | |
| 865 AGN 0.842106 | |
| 866 ATA 1.122807 | |
| 867 ATC 2.245614 | |
| 868 ATG 2.245614 | |
| 869 ATT 1.684211 | |
| 870 ATN 1.82456 | |
| 871 ANA 1.12281 | |
| 872 ANC 1.40351 | |
| 873 ANG 1.12281 | |
| 874 ANT 1.12281 | |
| 875 ANN 1.19298 | |
| 876 CAA 0.561404 | |
| 877 CAC 0.561404 | |
| 878 CAG 0.561404 | |
| 879 CAT 1.122807 | |
| 880 CAN 0.701755 | |
| 881 CCA 0.561404 | |
| 882 CCC 0.561404 | |
| 883 CCG 1.122807 | |
| 884 CCT 0.561404 | |
| 885 CCN 0.701755 | |
| 886 CGA 0.561404 | |
| 887 CGC 0.561404 | |
| 888 CGG 0.561404 | |
| 889 CGT 1.684211 | |
| 890 CGN 0.842106 | |
| 891 CTA 0.561404 | |
| 892 CTC 0.561404 | |
| 893 CTG 2.245614 | |
| 894 CTT 1.684211 | |
| 895 CTN 1.26316 | |
| 896 CNA 0.561404 | |
| 897 CNC 0.561404 | |
| 898 CNG 1.12281 | |
| 899 CNT 1.26316 | |
| 900 CNN 0.877193 | |
| 901 GAA 1.684211 | |
| 902 GAC 0.561404 | |
| 903 GAG 1.684211 | |
| 904 GAT 1.122807 | |
| 905 GAN 1.26316 | |
| 906 GCA 1.122807 | |
| 907 GCC 0.561404 | |
| 908 GCG 0.561404 | |
| 909 GCT 1.122807 | |
| 910 GCN 0.842105 | |
| 911 GGA 1.122807 | |
| 912 GGC 0.561404 | |
| 913 GGG 0.561404 | |
| 914 GGT 1.122807 | |
| 915 GGN 0.842105 | |
| 916 GTA 1.122807 | |
| 917 GTC 1.684211 | |
| 918 GTG 1.122807 | |
| 919 GTT 1.122807 | |
| 920 GTN 1.26316 | |
| 921 GNA 1.26316 | |
| 922 GNC 0.842106 | |
| 923 GNG 0.982457 | |
| 924 GNT 1.12281 | |
| 925 GNN 1.05263 | |
| 926 TAA 0.561404 | |
| 927 TAC 0.561404 | |
| 928 TAG 0.561404 | |
| 929 TAT 0.561404 | |
| 930 TAN 0.561404 | |
| 931 TCA 0.561404 | |
| 932 TCC 0.561404 | |
| 933 TCG 0.561404 | |
| 934 TCT 0.561404 | |
| 935 TCN 0.561404 | |
| 936 TGA 0.561404 | |
| 937 TGC 0.561404 | |
| 938 TGG 1.122807 | |
| 939 TGT 1.122807 | |
| 940 TGN 0.842105 | |
| 941 TTA 0.561404 | |
| 942 TTC 1.122807 | |
| 943 TTG 2.245614 | |
| 944 TTT 2.245614 | |
| 945 TTN 1.54386 | |
| 946 TNA 0.561404 | |
| 947 TNC 0.701755 | |
| 948 TNG 1.12281 | |
| 949 TNT 1.12281 | |
| 950 TNN 0.877193 | |
| 951 NAA 1.12281 | |
| 952 NAC 0.701755 | |
| 953 NAG 0.842106 | |
| 954 NAT 1.12281 | |
| 955 NAN 0.947369 | |
| 956 NCA 0.701755 | |
| 957 NCC 0.842106 | |
| 958 NCG 0.701755 | |
| 959 NCT 0.701755 | |
| 960 NCN 0.736842 | |
| 961 NGA 0.842106 | |
| 962 NGC 0.561404 | |
| 963 NGG 0.842105 | |
| 964 NGT 1.12281 | |
| 965 NGN 0.842106 | |
| 966 NTA 0.842106 | |
| 967 NTC 1.40351 | |
| 968 NTG 1.96491 | |
| 969 NTT 1.68421 | |
| 970 NTN 1.47368 | |
| 971 NNA 0.877193 | |
| 972 NNC 0.877193 | |
| 973 NNG 1.08772 | |
| 974 NNT 1.15789 | |
| 975 NNN 1 | |
| 976 end consensus | |
| 977 type 3SS_codon | |
| 978 phase 2 | |
| 979 begin consensus | |
| 980 AAA 1.333333 | |
| 981 AAC 1.333333 | |
| 982 AAG 0.666667 | |
| 983 AAT 0.666667 | |
| 984 AAN 1 | |
| 985 ACA 0.666667 | |
| 986 ACC 0.666667 | |
| 987 ACG 0.666667 | |
| 988 ACT 1.333333 | |
| 989 ACN 0.833334 | |
| 990 AGA 0.666667 | |
| 991 AGC 0.666667 | |
| 992 AGG 0.666667 | |
| 993 AGT 1.333333 | |
| 994 AGN 0.833334 | |
| 995 ATA 1.333333 | |
| 996 ATC 2.666667 | |
| 997 ATG 0.666667 | |
| 998 ATT 2.000000 | |
| 999 ATN 1.66667 | |
| 1000 ANA 1 | |
| 1001 ANC 1.33333 | |
| 1002 ANG 0.666667 | |
| 1003 ANT 1.33333 | |
| 1004 ANN 1.08333 | |
| 1005 CAA 1.333333 | |
| 1006 CAC 0.666667 | |
| 1007 CAG 0.666667 | |
| 1008 CAT 1.333333 | |
| 1009 CAN 1 | |
| 1010 CCA 0.666667 | |
| 1011 CCC 1.333333 | |
| 1012 CCG 1.333333 | |
| 1013 CCT 0.666667 | |
| 1014 CCN 1 | |
| 1015 CGA 0.666667 | |
| 1016 CGC 0.666667 | |
| 1017 CGG 0.666667 | |
| 1018 CGT 0.666667 | |
| 1019 CGN 0.666667 | |
| 1020 CTA 0.666667 | |
| 1021 CTC 0.666667 | |
| 1022 CTG 0.666667 | |
| 1023 CTT 0.666667 | |
| 1024 CTN 0.666667 | |
| 1025 CNA 0.833333 | |
| 1026 CNC 0.833333 | |
| 1027 CNG 0.833333 | |
| 1028 CNT 0.833333 | |
| 1029 CNN 0.833334 | |
| 1030 GAA 0.666667 | |
| 1031 GAC 0.666667 | |
| 1032 GAG 0.666667 | |
| 1033 GAT 1.333333 | |
| 1034 GAN 0.833334 | |
| 1035 GCA 0.666667 | |
| 1036 GCC 0.666667 | |
| 1037 GCG 2.000000 | |
| 1038 GCT 2.666667 | |
| 1039 GCN 1.5 | |
| 1040 GGA 1.333333 | |
| 1041 GGC 0.666667 | |
| 1042 GGG 0.666667 | |
| 1043 GGT 0.666667 | |
| 1044 GGN 0.833333 | |
| 1045 GTA 0.666667 | |
| 1046 GTC 1.333333 | |
| 1047 GTG 0.666667 | |
| 1048 GTT 1.333333 | |
| 1049 GTN 1 | |
| 1050 GNA 0.833334 | |
| 1051 GNC 0.833334 | |
| 1052 GNG 1 | |
| 1053 GNT 1.5 | |
| 1054 GNN 1.04167 | |
| 1055 TAA 1.333333 | |
| 1056 TAC 0.666667 | |
| 1057 TAG 0.666667 | |
| 1058 TAT 2.666667 | |
| 1059 TAN 1.33333 | |
| 1060 TCA 1.333333 | |
| 1061 TCC 0.666667 | |
| 1062 TCG 1.333333 | |
| 1063 TCT 0.666667 | |
| 1064 TCN 1 | |
| 1065 TGA 0.666667 | |
| 1066 TGC 0.666667 | |
| 1067 TGG 0.666667 | |
| 1068 TGT 2.666667 | |
| 1069 TGN 1.16667 | |
| 1070 TTA 0.666667 | |
| 1071 TTC 0.666667 | |
| 1072 TTG 0.666667 | |
| 1073 TTT 0.666667 | |
| 1074 TTN 0.666667 | |
| 1075 TNA 1 | |
| 1076 TNC 0.666667 | |
| 1077 TNG 0.833333 | |
| 1078 TNT 1.66667 | |
| 1079 TNN 1.04167 | |
| 1080 NAA 1.16667 | |
| 1081 NAC 0.833333 | |
| 1082 NAG 0.666667 | |
| 1083 NAT 1.5 | |
| 1084 NAN 1.04167 | |
| 1085 NCA 0.833334 | |
| 1086 NCC 0.833333 | |
| 1087 NCG 1.33333 | |
| 1088 NCT 1.33333 | |
| 1089 NCN 1.08333 | |
| 1090 NGA 0.833334 | |
| 1091 NGC 0.666667 | |
| 1092 NGG 0.666667 | |
| 1093 NGT 1.33333 | |
| 1094 NGN 0.875 | |
| 1095 NTA 0.833333 | |
| 1096 NTC 1.33333 | |
| 1097 NTG 0.666667 | |
| 1098 NTT 1.16667 | |
| 1099 NTN 1 | |
| 1100 NNA 0.916667 | |
| 1101 NNC 0.916667 | |
| 1102 NNG 0.833334 | |
| 1103 NNT 1.33333 | |
| 1104 NNN 1 | |
| 1105 end consensus | |
| 1106 type CDS | |
| 1107 phase all | |
| 1108 begin consensus | |
| 1109 AAA 2.386335 | |
| 1110 AAC 1.053160 | |
| 1111 AAG 1.564912 | |
| 1112 AAT 1.686987 | |
| 1113 AAN 1.67285 | |
| 1114 ACA 0.987639 | |
| 1115 ACC 0.645552 | |
| 1116 ACG 0.588997 | |
| 1117 ACT 1.051091 | |
| 1118 ACN 0.81832 | |
| 1119 AGA 1.264206 | |
| 1120 AGC 0.831769 | |
| 1121 AGG 0.727625 | |
| 1122 AGT 0.865564 | |
| 1123 AGN 0.922291 | |
| 1124 ATA 0.993847 | |
| 1125 ATC 1.040746 | |
| 1126 ATG 1.394558 | |
| 1127 ATT 1.851134 | |
| 1128 ATN 1.32007 | |
| 1129 ANA 1.40801 | |
| 1130 ANC 0.892807 | |
| 1131 ANG 1.06902 | |
| 1132 ANT 1.36369 | |
| 1133 ANN 1.18338 | |
| 1134 CAA 1.498701 | |
| 1135 CAC 0.575203 | |
| 1136 CAG 0.708314 | |
| 1137 CAT 0.951086 | |
| 1138 CAN 0.933326 | |
| 1139 CCA 0.795215 | |
| 1140 CCC 0.491751 | |
| 1141 CCG 0.455887 | |
| 1142 CCT 0.832459 | |
| 1143 CCN 0.643828 | |
| 1144 CGA 0.706935 | |
| 1145 CGC 0.368985 | |
| 1146 CGG 0.354502 | |
| 1147 CGT 0.741419 | |
| 1148 CGN 0.54296 | |
| 1149 CTA 0.836597 | |
| 1150 CTC 0.861426 | |
| 1151 CTG 0.917980 | |
| 1152 CTT 1.436629 | |
| 1153 CTN 1.01316 | |
| 1154 CNA 0.959362 | |
| 1155 CNC 0.574341 | |
| 1156 CNG 0.609171 | |
| 1157 CNT 0.990398 | |
| 1158 CNN 0.783318 | |
| 1159 GAA 1.682160 | |
| 1160 GAC 0.641414 | |
| 1161 GAG 0.823493 | |
| 1162 GAT 1.255930 | |
| 1163 GAN 1.10075 | |
| 1164 GCA 0.793146 | |
| 1165 GCC 0.515890 | |
| 1166 GCG 0.364847 | |
| 1167 GCT 0.964880 | |
| 1168 GCN 0.659691 | |
| 1169 GGA 0.946258 | |
| 1170 GGC 0.470370 | |
| 1171 GGG 0.352433 | |
| 1172 GGT 0.846942 | |
| 1173 GGN 0.654001 | |
| 1174 GTA 0.737281 | |
| 1175 GTC 0.688313 | |
| 1176 GTG 0.724867 | |
| 1177 GTT 1.275931 | |
| 1178 GTN 0.856598 | |
| 1179 GNA 1.03971 | |
| 1180 GNC 0.578997 | |
| 1181 GNG 0.56641 | |
| 1182 GNT 1.08592 | |
| 1183 GNN 0.81776 | |
| 1184 TAA 1.130406 | |
| 1185 TAC 0.999364 | |
| 1186 TAG 0.591066 | |
| 1187 TAT 1.385592 | |
| 1188 TAN 1.02661 | |
| 1189 TCA 1.159373 | |
| 1190 TCC 0.921429 | |
| 1191 TCG 0.764179 | |
| 1192 TCT 1.205582 | |
| 1193 TCN 1.01264 | |
| 1194 TGA 1.487666 | |
| 1195 TGC 0.967638 | |
| 1196 TGG 1.180064 | |
| 1197 TGT 0.966949 | |
| 1198 TGN 1.15058 | |
| 1199 TTA 1.538704 | |
| 1200 TTC 1.455251 | |
| 1201 TTG 1.566981 | |
| 1202 TTT 2.128391 | |
| 1203 TTN 1.67233 | |
| 1204 TNA 1.32904 | |
| 1205 TNC 1.08592 | |
| 1206 TNG 1.02557 | |
| 1207 TNT 1.42163 | |
| 1208 TNN 1.21554 | |
| 1209 NAA 1.6744 | |
| 1210 NAC 0.817285 | |
| 1211 NAG 0.921946 | |
| 1212 NAT 1.3199 | |
| 1213 NAN 1.18338 | |
| 1214 NCA 0.933843 | |
| 1215 NCC 0.643655 | |
| 1216 NCG 0.543477 | |
| 1217 NCT 1.0135 | |
| 1218 NCN 0.78362 | |
| 1219 NGA 1.10127 | |
| 1220 NGC 0.65969 | |
| 1221 NGG 0.653656 | |
| 1222 NGT 0.855218 | |
| 1223 NGN 0.817458 | |
| 1224 NTA 1.02661 | |
| 1225 NTC 1.01143 | |
| 1226 NTG 1.1511 | |
| 1227 NTT 1.67302 | |
| 1228 NTN 1.21554 | |
| 1229 NNA 1.18403 | |
| 1230 NNC 0.783016 | |
| 1231 NNG 0.817544 | |
| 1232 NNT 1.21541 | |
| 1233 NNN 1 | |
| 1234 end consensus | |
| 1235 type CDS | |
| 1236 phase 0 | |
| 1237 begin consensus | |
| 1238 AAA 2.488005 | |
| 1239 AAC 1.039424 | |
| 1240 AAG 1.727552 | |
| 1241 AAT 2.175971 | |
| 1242 AAN 1.85774 | |
| 1243 ACA 0.874108 | |
| 1244 ACC 0.690194 | |
| 1245 ACG 0.386426 | |
| 1246 ACT 1.630428 | |
| 1247 ACN 0.895289 | |
| 1248 AGA 0.702593 | |
| 1249 AGC 0.514546 | |
| 1250 AGG 0.276904 | |
| 1251 AGT 0.880307 | |
| 1252 AGN 0.593587 | |
| 1253 ATA 0.741855 | |
| 1254 ATC 0.721191 | |
| 1255 ATG 1.264667 | |
| 1256 ATT 2.516935 | |
| 1257 ATN 1.31116 | |
| 1258 ANA 1.20164 | |
| 1259 ANC 0.741339 | |
| 1260 ANG 0.913887 | |
| 1261 ANT 1.80091 | |
| 1262 ANN 1.16444 | |
| 1263 CAA 1.702754 | |
| 1264 CAC 0.394692 | |
| 1265 CAG 0.702593 | |
| 1266 CAT 1.045623 | |
| 1267 CAN 0.961415 | |
| 1268 CCA 0.774918 | |
| 1269 CCC 0.566207 | |
| 1270 CCG 0.258306 | |
| 1271 CCT 1.444448 | |
| 1272 CCN 0.76097 | |
| 1273 CGA 0.481483 | |
| 1274 CGC 0.421556 | |
| 1275 CGG 0.171515 | |
| 1276 CGT 1.318395 | |
| 1277 CGN 0.598237 | |
| 1278 CTA 0.506280 | |
| 1279 CTC 0.477350 | |
| 1280 CTG 0.343031 | |
| 1281 CTT 1.657292 | |
| 1282 CTN 0.745988 | |
| 1283 CNA 0.866359 | |
| 1284 CNC 0.464951 | |
| 1285 CNG 0.368861 | |
| 1286 CNT 1.36644 | |
| 1287 CNN 0.766653 | |
| 1288 GAA 2.884763 | |
| 1289 GAC 1.039424 | |
| 1290 GAG 1.504375 | |
| 1291 GAT 2.576862 | |
| 1292 GAN 2.00136 | |
| 1293 GCA 1.004294 | |
| 1294 GCC 0.745988 | |
| 1295 GCG 0.291369 | |
| 1296 GCT 1.905266 | |
| 1297 GCN 0.986729 | |
| 1298 GGA 1.049756 | |
| 1299 GGC 0.599270 | |
| 1300 GGG 0.264506 | |
| 1301 GGT 1.582900 | |
| 1302 GGN 0.874108 | |
| 1303 GTA 0.762520 | |
| 1304 GTC 0.750121 | |
| 1305 GTG 0.495948 | |
| 1306 GTT 2.006522 | |
| 1307 GTN 1.00378 | |
| 1308 GNA 1.42533 | |
| 1309 GNC 0.783701 | |
| 1310 GNG 0.639049 | |
| 1311 GNT 2.01789 | |
| 1312 GNN 1.21649 | |
| 1313 TAA 0.000000 | |
| 1314 TAC 0.770786 | |
| 1315 TAG 0.000000 | |
| 1316 TAT 1.477511 | |
| 1317 TAN 0.562074 | |
| 1318 TCA 1.024959 | |
| 1319 TCC 0.772852 | |
| 1320 TCG 0.415356 | |
| 1321 TCT 1.826741 | |
| 1322 TCN 1.00998 | |
| 1323 TGA 0.000000 | |
| 1324 TGC 0.322366 | |
| 1325 TGG 0.588938 | |
| 1326 TGT 0.485616 | |
| 1327 TGN 0.34923 | |
| 1328 TTA 1.630428 | |
| 1329 TTC 0.907171 | |
| 1330 TTG 1.450647 | |
| 1331 TTT 1.965193 | |
| 1332 TTN 1.48836 | |
| 1333 TNA 0.663847 | |
| 1334 TNC 0.693294 | |
| 1335 TNG 0.613735 | |
| 1336 TNT 1.43877 | |
| 1337 TNN 0.85241 | |
| 1338 NAA 1.76888 | |
| 1339 NAC 0.811082 | |
| 1340 NAG 0.98363 | |
| 1341 NAT 1.81899 | |
| 1342 NAN 1.34565 | |
| 1343 NCA 0.91957 | |
| 1344 NCC 0.69381 | |
| 1345 NCG 0.337864 | |
| 1346 NCT 1.70172 | |
| 1347 NCN 0.913241 | |
| 1348 NGA 0.558458 | |
| 1349 NGC 0.464434 | |
| 1350 NGG 0.325466 | |
| 1351 NGT 1.0668 | |
| 1352 NGN 0.603791 | |
| 1353 NTA 0.910271 | |
| 1354 NTC 0.713958 | |
| 1355 NTG 0.888573 | |
| 1356 NTT 2.03649 | |
| 1357 NTN 1.13732 | |
| 1358 NNA 1.03929 | |
| 1359 NNC 0.670821 | |
| 1360 NNG 0.633883 | |
| 1361 NNT 1.656 | |
| 1362 NNN 1 | |
| 1363 end consensus | |
| 1364 type CDS | |
| 1365 phase 1 | |
| 1366 begin consensus | |
| 1367 AAA 2.349249 | |
| 1368 AAC 1.177724 | |
| 1369 AAG 2.219080 | |
| 1370 AAT 1.330621 | |
| 1371 AAN 1.76917 | |
| 1372 ACA 1.167393 | |
| 1373 ACC 0.504148 | |
| 1374 ACG 0.816142 | |
| 1375 ACT 0.756223 | |
| 1376 ACN 0.810976 | |
| 1377 AGA 1.086812 | |
| 1378 AGC 0.979370 | |
| 1379 AGG 1.134334 | |
| 1380 AGT 0.735561 | |
| 1381 AGN 0.984019 | |
| 1382 ATA 1.694270 | |
| 1383 ATC 1.365747 | |
| 1384 ATG 2.539338 | |
| 1385 ATT 1.675674 | |
| 1386 ATN 1.81876 | |
| 1387 ANA 1.57443 | |
| 1388 ANC 1.00675 | |
| 1389 ANG 1.67722 | |
| 1390 ANT 1.12452 | |
| 1391 ANN 1.34573 | |
| 1392 CAA 1.200452 | |
| 1393 CAC 0.667377 | |
| 1394 CAG 1.028959 | |
| 1395 CAT 0.781017 | |
| 1396 CAN 0.919451 | |
| 1397 CCA 0.997966 | |
| 1398 CCC 0.456626 | |
| 1399 CCG 0.727296 | |
| 1400 CCT 0.595061 | |
| 1401 CCN 0.694237 | |
| 1402 CGA 0.435964 | |
| 1403 CGC 0.227280 | |
| 1404 CGG 0.378111 | |
| 1405 CGT 0.309927 | |
| 1406 CGN 0.337821 | |
| 1407 CTA 1.661211 | |
| 1408 CTC 1.413269 | |
| 1409 CTG 2.157094 | |
| 1410 CTT 1.576497 | |
| 1411 CTN 1.70202 | |
| 1412 CNA 1.0739 | |
| 1413 CNC 0.691138 | |
| 1414 CNG 1.07286 | |
| 1415 CNT 0.815626 | |
| 1416 CNN 0.913382 | |
| 1417 GAA 0.865730 | |
| 1418 GAC 0.384310 | |
| 1419 GAG 0.545472 | |
| 1420 GAT 0.440097 | |
| 1421 GAN 0.558902 | |
| 1422 GCA 0.615722 | |
| 1423 GCC 0.355383 | |
| 1424 GCG 0.475222 | |
| 1425 GCT 0.411170 | |
| 1426 GCN 0.464374 | |
| 1427 GGA 0.407038 | |
| 1428 GGC 0.245876 | |
| 1429 GGG 0.334722 | |
| 1430 GGT 0.314060 | |
| 1431 GGN 0.325424 | |
| 1432 GTA 1.076481 | |
| 1433 GTC 0.791348 | |
| 1434 GTG 1.504181 | |
| 1435 GTT 0.894657 | |
| 1436 GTN 1.06667 | |
| 1437 GNA 0.741243 | |
| 1438 GNC 0.444229 | |
| 1439 GNG 0.714899 | |
| 1440 GNT 0.514996 | |
| 1441 GNN 0.603842 | |
| 1442 TAA 1.140533 | |
| 1443 TAC 0.768620 | |
| 1444 TAG 0.964907 | |
| 1445 TAT 0.766554 | |
| 1446 TAN 0.910154 | |
| 1447 TCA 0.896723 | |
| 1448 TCC 0.595061 | |
| 1449 TCG 0.760355 | |
| 1450 TCT 0.603325 | |
| 1451 TCN 0.713866 | |
| 1452 TGA 1.037224 | |
| 1453 TGC 0.665311 | |
| 1454 TGG 1.208717 | |
| 1455 TGT 0.640517 | |
| 1456 TGN 0.887942 | |
| 1457 TTA 1.993866 | |
| 1458 TTC 1.686005 | |
| 1459 TTG 2.652978 | |
| 1460 TTT 1.812042 | |
| 1461 TTN 2.03622 | |
| 1462 TNA 1.26709 | |
| 1463 TNC 0.928749 | |
| 1464 TNG 1.39674 | |
| 1465 TNT 0.95561 | |
| 1466 TNN 1.13705 | |
| 1467 NAA 1.38899 | |
| 1468 NAC 0.749508 | |
| 1469 NAG 1.1896 | |
| 1470 NAT 0.829572 | |
| 1471 NAN 1.03942 | |
| 1472 NCA 0.919451 | |
| 1473 NCC 0.477804 | |
| 1474 NCG 0.694754 | |
| 1475 NCT 0.591445 | |
| 1476 NCN 0.670863 | |
| 1477 NGA 0.741759 | |
| 1478 NGC 0.529459 | |
| 1479 NGG 0.763971 | |
| 1480 NGT 0.500016 | |
| 1481 NGN 0.633801 | |
| 1482 NTA 1.60646 | |
| 1483 NTC 1.31409 | |
| 1484 NTG 2.2134 | |
| 1485 NTT 1.48972 | |
| 1486 NTN 1.65592 | |
| 1487 NNA 1.16416 | |
| 1488 NNC 0.767716 | |
| 1489 NNG 1.21543 | |
| 1490 NNT 0.852688 | |
| 1491 NNN 1 | |
| 1492 end consensus | |
| 1493 type CDS | |
| 1494 phase 2 | |
| 1495 begin consensus | |
| 1496 AAA 2.316265 | |
| 1497 AAC 0.942210 | |
| 1498 AAG 0.745916 | |
| 1499 AAT 1.551753 | |
| 1500 AAN 1.38904 | |
| 1501 ACA 0.921547 | |
| 1502 ACC 0.743850 | |
| 1503 ACG 0.566152 | |
| 1504 ACT 0.766578 | |
| 1505 ACN 0.749532 | |
| 1506 AGA 2.002195 | |
| 1507 AGC 1.002131 | |
| 1508 AGG 0.772777 | |
| 1509 AGT 0.981468 | |
| 1510 AGN 1.18964 | |
| 1511 ATA 0.545490 | |
| 1512 ATC 1.035191 | |
| 1513 ATG 0.378124 | |
| 1514 ATT 1.357526 | |
| 1515 ATN 0.829083 | |
| 1516 ANA 1.44637 | |
| 1517 ANC 0.930845 | |
| 1518 ANG 0.615742 | |
| 1519 ANT 1.16433 | |
| 1520 ANN 1.03932 | |
| 1521 CAA 1.591012 | |
| 1522 CAC 0.665332 | |
| 1523 CAG 0.394654 | |
| 1524 CAT 1.026926 | |
| 1525 CAN 0.919481 | |
| 1526 CCA 0.613676 | |
| 1527 CCC 0.454575 | |
| 1528 CCG 0.384322 | |
| 1529 CCT 0.458707 | |
| 1530 CCN 0.47782 | |
| 1531 CGA 1.204623 | |
| 1532 CGC 0.460774 | |
| 1533 CGG 0.516562 | |
| 1534 CGT 0.597146 | |
| 1535 CGN 0.694776 | |
| 1536 CTA 0.342997 | |
| 1537 CTC 0.694260 | |
| 1538 CTG 0.254149 | |
| 1539 CTT 1.074450 | |
| 1540 CTN 0.591464 | |
| 1541 CNA 0.938077 | |
| 1542 CNC 0.568735 | |
| 1543 CNG 0.387422 | |
| 1544 CNT 0.789307 | |
| 1545 CNN 0.670885 | |
| 1546 GAA 1.293472 | |
| 1547 GAC 0.502099 | |
| 1548 GAG 0.421515 | |
| 1549 GAT 0.750048 | |
| 1550 GAN 0.741783 | |
| 1551 GCA 0.760380 | |
| 1552 GCC 0.448376 | |
| 1553 GCG 0.330600 | |
| 1554 GCT 0.578550 | |
| 1555 GCN 0.529477 | |
| 1556 GGA 1.382321 | |
| 1557 GGC 0.568219 | |
| 1558 GGG 0.460774 | |
| 1559 GGT 0.644670 | |
| 1560 GGN 0.763996 | |
| 1561 GTA 0.373991 | |
| 1562 GTC 0.524827 | |
| 1563 GTG 0.175631 | |
| 1564 GTT 0.925680 | |
| 1565 GTN 0.500032 | |
| 1566 GNA 0.952541 | |
| 1567 GNC 0.51088 | |
| 1568 GNG 0.34713 | |
| 1569 GNT 0.724737 | |
| 1570 GNN 0.633822 | |
| 1571 TAA 2.248079 | |
| 1572 TAC 1.458772 | |
| 1573 TAG 0.807903 | |
| 1574 TAT 1.911280 | |
| 1575 TAN 1.60651 | |
| 1576 TCA 1.555886 | |
| 1577 TCC 1.396784 | |
| 1578 TCG 1.117841 | |
| 1579 TCT 1.186027 | |
| 1580 TCN 1.31413 | |
| 1581 TGA 3.421709 | |
| 1582 TGC 1.915413 | |
| 1583 TGG 1.741848 | |
| 1584 TGT 1.774908 | |
| 1585 TGN 2.21347 | |
| 1586 TTA 0.989733 | |
| 1587 TTC 1.770775 | |
| 1588 TTG 0.595080 | |
| 1589 TTT 2.603474 | |
| 1590 TTN 1.48977 | |
| 1591 TNA 2.05385 | |
| 1592 TNC 1.63544 | |
| 1593 TNG 1.06567 | |
| 1594 TNT 1.86892 | |
| 1595 TNN 1.65597 | |
| 1596 NAA 1.86221 | |
| 1597 NAC 0.892103 | |
| 1598 NAG 0.592497 | |
| 1599 NAT 1.31 | |
| 1600 NAN 1.1642 | |
| 1601 NCA 0.962872 | |
| 1602 NCC 0.760896 | |
| 1603 NCG 0.599729 | |
| 1604 NCT 0.747465 | |
| 1605 NCN 0.767741 | |
| 1606 NGA 2.00271 | |
| 1607 NGC 0.986634 | |
| 1608 NGG 0.87299 | |
| 1609 NGT 0.999548 | |
| 1610 NGN 1.21547 | |
| 1611 NTA 0.563053 | |
| 1612 NTC 1.00626 | |
| 1613 NTG 0.350746 | |
| 1614 NTT 1.49028 | |
| 1615 NTN 0.852586 | |
| 1616 NNA 1.34771 | |
| 1617 NNC 0.911474 | |
| 1618 NNG 0.603991 | |
| 1619 NNT 1.13682 | |
| 1620 NNN 1 | |
| 1621 end consensus | |
| 1622 type Intron_Corr_Term | |
| 1623 phase all | |
| 1624 225.12 | |
| 1625 type Intron_Corr_Term | |
| 1626 phase 0 | |
| 1627 524.049 | |
| 1628 type Intron_Corr_Term | |
| 1629 phase 1 | |
| 1630 652.388 | |
| 1631 type Intron_Corr_Term | |
| 1632 phase 2 | |
| 1633 998.969 | |
| 1634 type Intron_emission | |
| 1635 begin consensus | |
| 1636 A 1.233115 | |
| 1637 C 0.595593 | |
| 1638 G 0.670399 | |
| 1639 T 1.500893 | |
| 1640 end consensus | |
| 1641 type Pyrimidine_emission | |
| 1642 begin consensus | |
| 1643 A 0.261549 | |
| 1644 C 0.869936 | |
| 1645 G 0.127932 | |
| 1646 T 2.740583 | |
| 1647 end consensus | |
| 1648 type Spacer_emission | |
| 1649 begin consensus | |
| 1650 A 1.495231 | |
| 1651 C 0.607484 | |
| 1652 G 0.513573 | |
| 1653 T 1.383712 | |
| 1654 end consensus | |
| 1655 type Intron_Stay_Prob | |
| 1656 0.988929 | |
| 1657 type Central_Intron_Stay_Prob | |
| 1658 0.983466 | |
| 1659 type Pyrimidine_Stay_Prob | |
| 1660 0.904578 | |
| 1661 type No_Spacer_Prob | |
| 1662 0.0743243 | |
| 1663 type Spacer_Stay_Prob | |
| 1664 0.952081 |