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view orthologs/ucsb_hamster/lib/wisecfg/pombe.gf @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
| author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
|---|---|
| date | Tue, 11 Mar 2014 12:19:13 -0700 |
| parents | |
| children |
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# Splice sites and intron regions information for GeneWise-21 # Fri May 15 13:20:38 IDT 1998 # Created by Mor Amitai (mor@compugen.co.il) # dataset : ~/ftp/pub/PomBase/temp/cds_cdna ~/ftp/pub/PomBase/temp/cds_ex # Consensi are read from top down. The value, for a sequence, # is the number in the line of the first consensus that # matches the sequence. # Note: the set of sequences that are represented by a consensus # are all the sequences that match this consensus and none of the # previous consensi # # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of # occurrences of each sequence in the database. # In case of a consensus this is the number of occurrences of sequences # that are represented by the consensus in the database divided by the # number of sequences that are represented by the consensus. # *stay_prob is the probability of the transition from the state to itself. # No_Spacer_Prob is the probability of transition from Pyrimidine directly # to 3SS (no spacer). type 5SS center 3 phase all begin consensus ---GTA-GT- 0.0869141 ---GT----- 0.000821553 end consensus type 5SS center 3 phase 0 begin consensus ---GTA-GT- 0.0371094 ---GT----- 0.000356523 end consensus type 5SS center 3 phase 1 begin consensus ---GTA-GT- 0.0292969 ---GT----- 0.000294519 end consensus type 5SS center 3 phase 2 begin consensus ---GT----- 0.000488281 end consensus type 5SS_codon phase all begin consensus AAA 1.864078 AAC 0.621359 AAG 6.524272 AAT 1.864078 AAN 2.71845 ACA 0.932039 ACC 0.310680 ACG 1.553398 ACT 0.932039 ACN 0.932039 AGA 1.553398 AGC 0.310680 AGG 1.553398 AGT 1.864078 AGN 1.32039 ATA 0.932039 ATC 0.621359 ATG 2.796117 ATT 1.553398 ATN 1.47573 ANA 1.32039 ANC 0.46602 ANG 3.1068 ANT 1.5534 ANN 1.61165 CAA 1.242718 CAC 0.310680 CAG 3.417476 CAT 0.621359 CAN 1.39806 CCA 0.310680 CCC 0.310680 CCG 0.621359 CCT 0.310680 CCN 0.38835 CGA 0.621359 CGC 0.310680 CGG 1.242718 CGT 0.310680 CGN 0.621359 CTA 0.310680 CTC 0.310680 CTG 1.864078 CTT 0.621359 CTN 0.776699 CNA 0.621359 CNC 0.31068 CNG 1.78641 CNT 0.46602 CNN 0.796117 GAA 0.310680 GAC 0.621359 GAG 3.106796 GAT 1.242718 GAN 1.32039 GCA 0.621359 GCC 0.621359 GCG 0.310680 GCT 0.621359 GCN 0.543689 GGA 0.310680 GGC 0.310680 GGG 0.310680 GGT 0.310680 GGN 0.31068 GTA 0.310680 GTC 0.310680 GTG 0.932039 GTT 0.310680 GTN 0.46602 GNA 0.38835 GNC 0.46602 GNG 1.16505 GNT 0.621359 GNN 0.660194 TAA 0.621359 TAC 0.932039 TAG 0.932039 TAT 0.621359 TAN 0.776699 TCA 0.621359 TCC 0.310680 TCG 0.621359 TCT 0.932039 TCN 0.621359 TGA 0.621359 TGC 0.621359 TGG 1.242718 TGT 0.621359 TGN 0.776699 TTA 0.621359 TTC 0.621359 TTG 3.106796 TTT 1.864078 TTN 1.5534 TNA 0.621359 TNC 0.621359 TNG 1.47573 TNT 1.00971 TNN 0.932039 NAA 1.00971 NAC 0.621359 NAG 3.49515 NAT 1.08738 NAN 1.5534 NCA 0.621359 NCC 0.38835 NCG 0.776699 NCT 0.699029 NCN 0.621359 NGA 0.776699 NGC 0.38835 NGG 1.08738 NGT 0.776699 NGN 0.757282 NTA 0.543689 NTC 0.46602 NTG 2.17476 NTT 1.08738 NTN 1.06796 NNA 0.737864 NNC 0.46602 NNG 1.8835 NNT 0.912621 NNN 1 end consensus type 5SS_codon phase 0 begin consensus AAA 0.512000 AAC 0.512000 AAG 6.144000 AAT 1.536000 AAN 2.176 ACA 1.024000 ACC 0.512000 ACG 0.512000 ACT 0.512000 ACN 0.64 AGA 0.512000 AGC 0.512000 AGG 1.536000 AGT 1.024000 AGN 0.896 ATA 0.512000 ATC 0.512000 ATG 2.048000 ATT 1.536000 ATN 1.152 ANA 0.64 ANC 0.512 ANG 2.56 ANT 1.152 ANN 1.216 CAA 1.024000 CAC 0.512000 CAG 4.608000 CAT 1.024000 CAN 1.792 CCA 0.512000 CCC 0.512000 CCG 1.024000 CCT 0.512000 CCN 0.64 CGA 0.512000 CGC 0.512000 CGG 1.024000 CGT 0.512000 CGN 0.64 CTA 0.512000 CTC 0.512000 CTG 1.536000 CTT 1.024000 CTN 0.896 CNA 0.64 CNC 0.512 CNG 2.048 CNT 0.768 CNN 0.992 GAA 0.512000 GAC 0.512000 GAG 4.096000 GAT 1.536000 GAN 1.664 GCA 1.024000 GCC 1.024000 GCG 0.512000 GCT 1.024000 GCN 0.896 GGA 0.512000 GGC 0.512000 GGG 0.512000 GGT 0.512000 GGN 0.512 GTA 0.512000 GTC 0.512000 GTG 1.536000 GTT 0.512000 GTN 0.768 GNA 0.64 GNC 0.64 GNG 1.664 GNT 0.896 GNN 0.96 TAA 0.512000 TAC 1.536000 TAG 0.512000 TAT 0.512000 TAN 0.768 TCA 0.512000 TCC 0.512000 TCG 0.512000 TCT 1.536000 TCN 0.768 TGA 0.512000 TGC 0.512000 TGG 0.512000 TGT 0.512000 TGN 0.512 TTA 1.024000 TTC 0.512000 TTG 2.048000 TTT 1.536000 TTN 1.28 TNA 0.64 TNC 0.768 TNG 0.896 TNT 1.024 TNN 0.832 NAA 0.64 NAC 0.768 NAG 3.84 NAT 1.152 NAN 1.6 NCA 0.768 NCC 0.64 NCG 0.64 NCT 0.896 NCN 0.736 NGA 0.512 NGC 0.512 NGG 0.896 NGT 0.64 NGN 0.64 NTA 0.64 NTC 0.512 NTG 1.792 NTT 1.152 NTN 1.024 NNA 0.64 NNC 0.608 NNG 1.792 NNT 0.96 NNN 1 end consensus type 5SS_codon phase 1 begin consensus AAA 1.699115 AAC 0.566372 AAG 3.964602 AAT 1.132743 AAN 1.84071 ACA 1.132743 ACC 0.566372 ACG 2.265487 ACT 1.699115 ACN 1.41593 AGA 1.132743 AGC 0.566372 AGG 1.699115 AGT 1.132743 AGN 1.13274 ATA 1.699115 ATC 1.132743 ATG 2.831858 ATT 1.699115 ATN 1.84071 ANA 1.41593 ANC 0.707965 ANG 2.69027 ANT 1.41593 ANN 1.55752 CAA 1.132743 CAC 0.566372 CAG 1.132743 CAT 0.566372 CAN 0.849557 CCA 0.566372 CCC 0.566372 CCG 0.566372 CCT 0.566372 CCN 0.566372 CGA 0.566372 CGC 0.566372 CGG 1.699115 CGT 0.566372 CGN 0.849558 CTA 0.566372 CTC 0.566372 CTG 2.265487 CTT 0.566372 CTN 0.991151 CNA 0.707965 CNC 0.566372 CNG 1.41593 CNT 0.566372 CNN 0.814159 GAA 0.566372 GAC 1.132743 GAG 1.699115 GAT 0.566372 GAN 0.99115 GCA 0.566372 GCC 0.566372 GCG 0.566372 GCT 0.566372 GCN 0.566372 GGA 0.566372 GGC 0.566372 GGG 0.566372 GGT 0.566372 GGN 0.566372 GTA 0.566372 GTC 0.566372 GTG 0.566372 GTT 0.566372 GTN 0.566372 GNA 0.566372 GNC 0.707965 GNG 0.849558 GNT 0.566372 GNN 0.672567 TAA 0.566372 TAC 0.566372 TAG 0.566372 TAT 1.132743 TAN 0.707965 TCA 0.566372 TCC 0.566372 TCG 0.566372 TCT 0.566372 TCN 0.566372 TGA 0.566372 TGC 0.566372 TGG 1.699115 TGT 0.566372 TGN 0.849558 TTA 0.566372 TTC 0.566372 TTG 3.964602 TTT 1.699115 TTN 1.69912 TNA 0.566372 TNC 0.566372 TNG 1.69912 TNT 0.99115 TNN 0.955752 NAA 0.99115 NAC 0.707965 NAG 1.84071 NAT 0.849557 NAN 1.09735 NCA 0.707965 NCC 0.566372 NCG 0.991151 NCT 0.849558 NCN 0.778761 NGA 0.707965 NGC 0.566372 NGG 1.41593 NGT 0.707965 NGN 0.849558 NTA 0.849558 NTC 0.707965 NTG 2.40708 NTT 1.13274 NTN 1.27434 NNA 0.814159 NNC 0.637168 NNG 1.66372 NNT 0.884956 NNN 1 end consensus type 5SS_codon phase 2 begin consensus AAA 2.666667 AAC 1.333333 AAG 2.666667 AAT 2.000000 AAN 2.16667 ACA 0.666667 ACC 0.666667 ACG 1.333333 ACT 0.666667 ACN 0.833334 AGA 2.666667 AGC 0.666667 AGG 0.666667 AGT 2.666667 AGN 1.66667 ATA 0.666667 ATC 0.666667 ATG 1.333333 ATT 0.666667 ATN 0.833334 ANA 1.66667 ANC 0.833333 ANG 1.5 ANT 1.5 ANN 1.375 CAA 1.333333 CAC 0.666667 CAG 1.333333 CAT 0.666667 CAN 1 CCA 0.666667 CCC 0.666667 CCG 0.666667 CCT 0.666667 CCN 0.666667 CGA 1.333333 CGC 0.666667 CGG 0.666667 CGT 0.666667 CGN 0.833333 CTA 0.666667 CTC 0.666667 CTG 0.666667 CTT 0.666667 CTN 0.666667 CNA 1 CNC 0.666667 CNG 0.833333 CNT 0.666667 CNN 0.791667 GAA 0.666667 GAC 0.666667 GAG 0.666667 GAT 1.333333 GAN 0.833334 GCA 0.666667 GCC 0.666667 GCG 0.666667 GCT 0.666667 GCN 0.666667 GGA 0.666667 GGC 0.666667 GGG 0.666667 GGT 0.666667 GGN 0.666667 GTA 0.666667 GTC 0.666667 GTG 0.666667 GTT 0.666667 GTN 0.666667 GNA 0.666667 GNC 0.666667 GNG 0.666667 GNT 0.833333 GNN 0.708334 TAA 1.333333 TAC 0.666667 TAG 2.000000 TAT 0.666667 TAN 1.16667 TCA 1.333333 TCC 0.666667 TCG 1.333333 TCT 0.666667 TCN 1 TGA 1.333333 TGC 1.333333 TGG 1.333333 TGT 1.333333 TGN 1.33333 TTA 0.666667 TTC 1.333333 TTG 0.666667 TTT 1.333333 TTN 1 TNA 1.16667 TNC 1 TNG 1.33333 TNT 1 TNN 1.125 NAA 1.5 NAC 0.833333 NAG 1.66667 NAT 1.16667 NAN 1.29167 NCA 0.833334 NCC 0.666667 NCG 1 NCT 0.666667 NCN 0.791667 NGA 1.5 NGC 0.833334 NGG 0.833334 NGT 1.33333 NGN 1.125 NTA 0.666667 NTC 0.833334 NTG 0.833333 NTT 0.833334 NTN 0.791667 NNA 1.125 NNC 0.791667 NNG 1.08333 NNT 1 NNN 1 end consensus type 3SS center 3 phase all begin consensus TAG--- 1.64062 -AG--- 0.229167 end consensus type 3SS center 3 phase 0 begin consensus TAG--- 0.765625 -AG--- 0.09375 end consensus type 3SS center 3 phase 1 begin consensus TAG--- 0.515625 -AG--- 0.0885417 end consensus type 3SS center 3 phase 2 begin consensus -AG--- 0.125 end consensus type 3SS_codon phase all begin consensus AAA 1.802817 AAC 1.502347 AAG 0.300469 AAT 1.802817 AAN 1.35211 ACA 0.300469 ACC 1.802817 ACG 0.300469 ACT 0.901408 ACN 0.826291 AGA 0.600939 AGC 0.300469 AGG 0.600939 AGT 1.502347 AGN 0.751173 ATA 1.502347 ATC 2.103286 ATG 1.502347 ATT 2.103286 ATN 1.80282 ANA 1.05164 ANC 1.42723 ANG 0.676056 ANT 1.57746 ANN 1.1831 CAA 2.103286 CAC 0.300469 CAG 0.300469 CAT 1.201878 CAN 0.976526 CCA 0.600939 CCC 0.600939 CCG 0.901408 CCT 0.600939 CCN 0.676056 CGA 0.300469 CGC 0.300469 CGG 0.300469 CGT 0.901408 CGN 0.450704 CTA 0.901408 CTC 0.600939 CTG 1.201878 CTT 1.201878 CTN 0.976526 CNA 0.976526 CNC 0.450704 CNG 0.676056 CNT 0.976526 CNN 0.769953 GAA 1.802817 GAC 0.300469 GAG 1.201878 GAT 2.403756 GAN 1.42723 GCA 0.901408 GCC 0.300469 GCG 1.201878 GCT 1.502347 GCN 0.976526 GGA 0.901408 GGC 0.600939 GGG 0.600939 GGT 1.201878 GGN 0.826291 GTA 1.201878 GTC 1.502347 GTG 0.600939 GTT 1.502347 GTN 1.20188 GNA 1.20188 GNC 0.676056 GNG 0.901408 GNT 1.65258 GNN 1.10798 TAA 0.600939 TAC 0.300469 TAG 0.300469 TAT 1.502347 TAN 0.676056 TCA 1.201878 TCC 0.901408 TCG 0.901408 TCT 1.201878 TCN 1.05164 TGA 0.300469 TGC 0.300469 TGG 0.901408 TGT 1.502347 TGN 0.751173 TTA 0.600939 TTC 0.600939 TTG 1.201878 TTT 2.704225 TTN 1.277 TNA 0.676056 TNC 0.525821 TNG 0.826291 TNT 1.7277 TNN 0.938967 NAA 1.57746 NAC 0.600939 NAG 0.525821 NAT 1.7277 NAN 1.10798 NCA 0.751173 NCC 0.901408 NCG 0.826291 NCT 1.05164 NCN 0.882629 NGA 0.525821 NGC 0.375587 NGG 0.600939 NGT 1.277 NGN 0.694835 NTA 1.05164 NTC 1.20188 NTG 1.12676 NTT 1.87793 NTN 1.31455 NNA 0.976526 NNC 0.769953 NNG 0.769953 NNT 1.48357 NNN 1 end consensus type 3SS_codon phase 0 begin consensus AAA 1.465649 AAC 1.465649 AAG 0.488550 AAT 1.954198 AAN 1.34351 ACA 0.488550 ACC 1.954198 ACG 0.488550 ACT 0.977099 ACN 0.977099 AGA 0.488550 AGC 0.488550 AGG 0.488550 AGT 1.954198 AGN 0.854962 ATA 1.465649 ATC 0.488550 ATG 0.977099 ATT 1.465649 ATN 1.09924 ANA 0.9771 ANC 1.09924 ANG 0.610687 ANT 1.58779 ANN 1.0687 CAA 2.931298 CAC 0.488550 CAG 0.488550 CAT 0.977099 CAN 1.22137 CCA 0.977099 CCC 0.488550 CCG 0.488550 CCT 0.977099 CCN 0.732824 CGA 0.488550 CGC 0.488550 CGG 0.488550 CGT 0.488550 CGN 0.48855 CTA 1.465649 CTC 0.977099 CTG 0.488550 CTT 0.977099 CTN 0.977099 CNA 1.46565 CNC 0.610687 CNG 0.48855 CNT 0.854962 CNN 0.854962 GAA 1.954198 GAC 0.488550 GAG 0.977099 GAT 2.931298 GAN 1.58779 GCA 0.977099 GCC 0.488550 GCG 0.977099 GCT 0.488550 GCN 0.732824 GGA 0.488550 GGC 0.977099 GGG 0.977099 GGT 1.465649 GGN 0.977099 GTA 1.465649 GTC 0.977099 GTG 0.488550 GTT 1.465649 GTN 1.09924 GNA 1.22137 GNC 0.732824 GNG 0.854962 GNT 1.58779 GNN 1.09924 TAA 0.488550 TAC 0.488550 TAG 0.488550 TAT 0.977099 TAN 0.610687 TCA 1.465649 TCC 1.465649 TCG 0.977099 TCT 1.954198 TCN 1.46565 TGA 0.488550 TGC 0.488550 TGG 0.977099 TGT 0.488550 TGN 0.610687 TTA 0.977099 TTC 0.488550 TTG 0.488550 TTT 2.931298 TTN 1.22137 TNA 0.854962 TNC 0.732825 TNG 0.732824 TNT 1.58779 TNN 0.977099 NAA 1.70992 NAC 0.732825 NAG 0.610687 NAT 1.70992 NAN 1.19084 NCA 0.977099 NCC 1.09924 NCG 0.732824 NCT 1.09924 NCN 0.977099 NGA 0.48855 NGC 0.610687 NGG 0.732824 NGT 1.09924 NGN 0.732825 NTA 1.34351 NTC 0.732824 NTG 0.610687 NTT 1.70992 NTN 1.09924 NNA 1.12977 NNC 0.793893 NNG 0.671756 NNT 1.40458 NNN 1 end consensus type 3SS_codon phase 1 begin consensus AAA 1.684211 AAC 1.122807 AAG 0.561404 AAT 1.684211 AAN 1.26316 ACA 0.561404 ACC 1.684211 ACG 0.561404 ACT 0.561404 ACN 0.842106 AGA 1.122807 AGC 0.561404 AGG 1.122807 AGT 0.561404 AGN 0.842106 ATA 1.122807 ATC 2.245614 ATG 2.245614 ATT 1.684211 ATN 1.82456 ANA 1.12281 ANC 1.40351 ANG 1.12281 ANT 1.12281 ANN 1.19298 CAA 0.561404 CAC 0.561404 CAG 0.561404 CAT 1.122807 CAN 0.701755 CCA 0.561404 CCC 0.561404 CCG 1.122807 CCT 0.561404 CCN 0.701755 CGA 0.561404 CGC 0.561404 CGG 0.561404 CGT 1.684211 CGN 0.842106 CTA 0.561404 CTC 0.561404 CTG 2.245614 CTT 1.684211 CTN 1.26316 CNA 0.561404 CNC 0.561404 CNG 1.12281 CNT 1.26316 CNN 0.877193 GAA 1.684211 GAC 0.561404 GAG 1.684211 GAT 1.122807 GAN 1.26316 GCA 1.122807 GCC 0.561404 GCG 0.561404 GCT 1.122807 GCN 0.842105 GGA 1.122807 GGC 0.561404 GGG 0.561404 GGT 1.122807 GGN 0.842105 GTA 1.122807 GTC 1.684211 GTG 1.122807 GTT 1.122807 GTN 1.26316 GNA 1.26316 GNC 0.842106 GNG 0.982457 GNT 1.12281 GNN 1.05263 TAA 0.561404 TAC 0.561404 TAG 0.561404 TAT 0.561404 TAN 0.561404 TCA 0.561404 TCC 0.561404 TCG 0.561404 TCT 0.561404 TCN 0.561404 TGA 0.561404 TGC 0.561404 TGG 1.122807 TGT 1.122807 TGN 0.842105 TTA 0.561404 TTC 1.122807 TTG 2.245614 TTT 2.245614 TTN 1.54386 TNA 0.561404 TNC 0.701755 TNG 1.12281 TNT 1.12281 TNN 0.877193 NAA 1.12281 NAC 0.701755 NAG 0.842106 NAT 1.12281 NAN 0.947369 NCA 0.701755 NCC 0.842106 NCG 0.701755 NCT 0.701755 NCN 0.736842 NGA 0.842106 NGC 0.561404 NGG 0.842105 NGT 1.12281 NGN 0.842106 NTA 0.842106 NTC 1.40351 NTG 1.96491 NTT 1.68421 NTN 1.47368 NNA 0.877193 NNC 0.877193 NNG 1.08772 NNT 1.15789 NNN 1 end consensus type 3SS_codon phase 2 begin consensus AAA 1.333333 AAC 1.333333 AAG 0.666667 AAT 0.666667 AAN 1 ACA 0.666667 ACC 0.666667 ACG 0.666667 ACT 1.333333 ACN 0.833334 AGA 0.666667 AGC 0.666667 AGG 0.666667 AGT 1.333333 AGN 0.833334 ATA 1.333333 ATC 2.666667 ATG 0.666667 ATT 2.000000 ATN 1.66667 ANA 1 ANC 1.33333 ANG 0.666667 ANT 1.33333 ANN 1.08333 CAA 1.333333 CAC 0.666667 CAG 0.666667 CAT 1.333333 CAN 1 CCA 0.666667 CCC 1.333333 CCG 1.333333 CCT 0.666667 CCN 1 CGA 0.666667 CGC 0.666667 CGG 0.666667 CGT 0.666667 CGN 0.666667 CTA 0.666667 CTC 0.666667 CTG 0.666667 CTT 0.666667 CTN 0.666667 CNA 0.833333 CNC 0.833333 CNG 0.833333 CNT 0.833333 CNN 0.833334 GAA 0.666667 GAC 0.666667 GAG 0.666667 GAT 1.333333 GAN 0.833334 GCA 0.666667 GCC 0.666667 GCG 2.000000 GCT 2.666667 GCN 1.5 GGA 1.333333 GGC 0.666667 GGG 0.666667 GGT 0.666667 GGN 0.833333 GTA 0.666667 GTC 1.333333 GTG 0.666667 GTT 1.333333 GTN 1 GNA 0.833334 GNC 0.833334 GNG 1 GNT 1.5 GNN 1.04167 TAA 1.333333 TAC 0.666667 TAG 0.666667 TAT 2.666667 TAN 1.33333 TCA 1.333333 TCC 0.666667 TCG 1.333333 TCT 0.666667 TCN 1 TGA 0.666667 TGC 0.666667 TGG 0.666667 TGT 2.666667 TGN 1.16667 TTA 0.666667 TTC 0.666667 TTG 0.666667 TTT 0.666667 TTN 0.666667 TNA 1 TNC 0.666667 TNG 0.833333 TNT 1.66667 TNN 1.04167 NAA 1.16667 NAC 0.833333 NAG 0.666667 NAT 1.5 NAN 1.04167 NCA 0.833334 NCC 0.833333 NCG 1.33333 NCT 1.33333 NCN 1.08333 NGA 0.833334 NGC 0.666667 NGG 0.666667 NGT 1.33333 NGN 0.875 NTA 0.833333 NTC 1.33333 NTG 0.666667 NTT 1.16667 NTN 1 NNA 0.916667 NNC 0.916667 NNG 0.833334 NNT 1.33333 NNN 1 end consensus type CDS phase all begin consensus AAA 2.386335 AAC 1.053160 AAG 1.564912 AAT 1.686987 AAN 1.67285 ACA 0.987639 ACC 0.645552 ACG 0.588997 ACT 1.051091 ACN 0.81832 AGA 1.264206 AGC 0.831769 AGG 0.727625 AGT 0.865564 AGN 0.922291 ATA 0.993847 ATC 1.040746 ATG 1.394558 ATT 1.851134 ATN 1.32007 ANA 1.40801 ANC 0.892807 ANG 1.06902 ANT 1.36369 ANN 1.18338 CAA 1.498701 CAC 0.575203 CAG 0.708314 CAT 0.951086 CAN 0.933326 CCA 0.795215 CCC 0.491751 CCG 0.455887 CCT 0.832459 CCN 0.643828 CGA 0.706935 CGC 0.368985 CGG 0.354502 CGT 0.741419 CGN 0.54296 CTA 0.836597 CTC 0.861426 CTG 0.917980 CTT 1.436629 CTN 1.01316 CNA 0.959362 CNC 0.574341 CNG 0.609171 CNT 0.990398 CNN 0.783318 GAA 1.682160 GAC 0.641414 GAG 0.823493 GAT 1.255930 GAN 1.10075 GCA 0.793146 GCC 0.515890 GCG 0.364847 GCT 0.964880 GCN 0.659691 GGA 0.946258 GGC 0.470370 GGG 0.352433 GGT 0.846942 GGN 0.654001 GTA 0.737281 GTC 0.688313 GTG 0.724867 GTT 1.275931 GTN 0.856598 GNA 1.03971 GNC 0.578997 GNG 0.56641 GNT 1.08592 GNN 0.81776 TAA 1.130406 TAC 0.999364 TAG 0.591066 TAT 1.385592 TAN 1.02661 TCA 1.159373 TCC 0.921429 TCG 0.764179 TCT 1.205582 TCN 1.01264 TGA 1.487666 TGC 0.967638 TGG 1.180064 TGT 0.966949 TGN 1.15058 TTA 1.538704 TTC 1.455251 TTG 1.566981 TTT 2.128391 TTN 1.67233 TNA 1.32904 TNC 1.08592 TNG 1.02557 TNT 1.42163 TNN 1.21554 NAA 1.6744 NAC 0.817285 NAG 0.921946 NAT 1.3199 NAN 1.18338 NCA 0.933843 NCC 0.643655 NCG 0.543477 NCT 1.0135 NCN 0.78362 NGA 1.10127 NGC 0.65969 NGG 0.653656 NGT 0.855218 NGN 0.817458 NTA 1.02661 NTC 1.01143 NTG 1.1511 NTT 1.67302 NTN 1.21554 NNA 1.18403 NNC 0.783016 NNG 0.817544 NNT 1.21541 NNN 1 end consensus type CDS phase 0 begin consensus AAA 2.488005 AAC 1.039424 AAG 1.727552 AAT 2.175971 AAN 1.85774 ACA 0.874108 ACC 0.690194 ACG 0.386426 ACT 1.630428 ACN 0.895289 AGA 0.702593 AGC 0.514546 AGG 0.276904 AGT 0.880307 AGN 0.593587 ATA 0.741855 ATC 0.721191 ATG 1.264667 ATT 2.516935 ATN 1.31116 ANA 1.20164 ANC 0.741339 ANG 0.913887 ANT 1.80091 ANN 1.16444 CAA 1.702754 CAC 0.394692 CAG 0.702593 CAT 1.045623 CAN 0.961415 CCA 0.774918 CCC 0.566207 CCG 0.258306 CCT 1.444448 CCN 0.76097 CGA 0.481483 CGC 0.421556 CGG 0.171515 CGT 1.318395 CGN 0.598237 CTA 0.506280 CTC 0.477350 CTG 0.343031 CTT 1.657292 CTN 0.745988 CNA 0.866359 CNC 0.464951 CNG 0.368861 CNT 1.36644 CNN 0.766653 GAA 2.884763 GAC 1.039424 GAG 1.504375 GAT 2.576862 GAN 2.00136 GCA 1.004294 GCC 0.745988 GCG 0.291369 GCT 1.905266 GCN 0.986729 GGA 1.049756 GGC 0.599270 GGG 0.264506 GGT 1.582900 GGN 0.874108 GTA 0.762520 GTC 0.750121 GTG 0.495948 GTT 2.006522 GTN 1.00378 GNA 1.42533 GNC 0.783701 GNG 0.639049 GNT 2.01789 GNN 1.21649 TAA 0.000000 TAC 0.770786 TAG 0.000000 TAT 1.477511 TAN 0.562074 TCA 1.024959 TCC 0.772852 TCG 0.415356 TCT 1.826741 TCN 1.00998 TGA 0.000000 TGC 0.322366 TGG 0.588938 TGT 0.485616 TGN 0.34923 TTA 1.630428 TTC 0.907171 TTG 1.450647 TTT 1.965193 TTN 1.48836 TNA 0.663847 TNC 0.693294 TNG 0.613735 TNT 1.43877 TNN 0.85241 NAA 1.76888 NAC 0.811082 NAG 0.98363 NAT 1.81899 NAN 1.34565 NCA 0.91957 NCC 0.69381 NCG 0.337864 NCT 1.70172 NCN 0.913241 NGA 0.558458 NGC 0.464434 NGG 0.325466 NGT 1.0668 NGN 0.603791 NTA 0.910271 NTC 0.713958 NTG 0.888573 NTT 2.03649 NTN 1.13732 NNA 1.03929 NNC 0.670821 NNG 0.633883 NNT 1.656 NNN 1 end consensus type CDS phase 1 begin consensus AAA 2.349249 AAC 1.177724 AAG 2.219080 AAT 1.330621 AAN 1.76917 ACA 1.167393 ACC 0.504148 ACG 0.816142 ACT 0.756223 ACN 0.810976 AGA 1.086812 AGC 0.979370 AGG 1.134334 AGT 0.735561 AGN 0.984019 ATA 1.694270 ATC 1.365747 ATG 2.539338 ATT 1.675674 ATN 1.81876 ANA 1.57443 ANC 1.00675 ANG 1.67722 ANT 1.12452 ANN 1.34573 CAA 1.200452 CAC 0.667377 CAG 1.028959 CAT 0.781017 CAN 0.919451 CCA 0.997966 CCC 0.456626 CCG 0.727296 CCT 0.595061 CCN 0.694237 CGA 0.435964 CGC 0.227280 CGG 0.378111 CGT 0.309927 CGN 0.337821 CTA 1.661211 CTC 1.413269 CTG 2.157094 CTT 1.576497 CTN 1.70202 CNA 1.0739 CNC 0.691138 CNG 1.07286 CNT 0.815626 CNN 0.913382 GAA 0.865730 GAC 0.384310 GAG 0.545472 GAT 0.440097 GAN 0.558902 GCA 0.615722 GCC 0.355383 GCG 0.475222 GCT 0.411170 GCN 0.464374 GGA 0.407038 GGC 0.245876 GGG 0.334722 GGT 0.314060 GGN 0.325424 GTA 1.076481 GTC 0.791348 GTG 1.504181 GTT 0.894657 GTN 1.06667 GNA 0.741243 GNC 0.444229 GNG 0.714899 GNT 0.514996 GNN 0.603842 TAA 1.140533 TAC 0.768620 TAG 0.964907 TAT 0.766554 TAN 0.910154 TCA 0.896723 TCC 0.595061 TCG 0.760355 TCT 0.603325 TCN 0.713866 TGA 1.037224 TGC 0.665311 TGG 1.208717 TGT 0.640517 TGN 0.887942 TTA 1.993866 TTC 1.686005 TTG 2.652978 TTT 1.812042 TTN 2.03622 TNA 1.26709 TNC 0.928749 TNG 1.39674 TNT 0.95561 TNN 1.13705 NAA 1.38899 NAC 0.749508 NAG 1.1896 NAT 0.829572 NAN 1.03942 NCA 0.919451 NCC 0.477804 NCG 0.694754 NCT 0.591445 NCN 0.670863 NGA 0.741759 NGC 0.529459 NGG 0.763971 NGT 0.500016 NGN 0.633801 NTA 1.60646 NTC 1.31409 NTG 2.2134 NTT 1.48972 NTN 1.65592 NNA 1.16416 NNC 0.767716 NNG 1.21543 NNT 0.852688 NNN 1 end consensus type CDS phase 2 begin consensus AAA 2.316265 AAC 0.942210 AAG 0.745916 AAT 1.551753 AAN 1.38904 ACA 0.921547 ACC 0.743850 ACG 0.566152 ACT 0.766578 ACN 0.749532 AGA 2.002195 AGC 1.002131 AGG 0.772777 AGT 0.981468 AGN 1.18964 ATA 0.545490 ATC 1.035191 ATG 0.378124 ATT 1.357526 ATN 0.829083 ANA 1.44637 ANC 0.930845 ANG 0.615742 ANT 1.16433 ANN 1.03932 CAA 1.591012 CAC 0.665332 CAG 0.394654 CAT 1.026926 CAN 0.919481 CCA 0.613676 CCC 0.454575 CCG 0.384322 CCT 0.458707 CCN 0.47782 CGA 1.204623 CGC 0.460774 CGG 0.516562 CGT 0.597146 CGN 0.694776 CTA 0.342997 CTC 0.694260 CTG 0.254149 CTT 1.074450 CTN 0.591464 CNA 0.938077 CNC 0.568735 CNG 0.387422 CNT 0.789307 CNN 0.670885 GAA 1.293472 GAC 0.502099 GAG 0.421515 GAT 0.750048 GAN 0.741783 GCA 0.760380 GCC 0.448376 GCG 0.330600 GCT 0.578550 GCN 0.529477 GGA 1.382321 GGC 0.568219 GGG 0.460774 GGT 0.644670 GGN 0.763996 GTA 0.373991 GTC 0.524827 GTG 0.175631 GTT 0.925680 GTN 0.500032 GNA 0.952541 GNC 0.51088 GNG 0.34713 GNT 0.724737 GNN 0.633822 TAA 2.248079 TAC 1.458772 TAG 0.807903 TAT 1.911280 TAN 1.60651 TCA 1.555886 TCC 1.396784 TCG 1.117841 TCT 1.186027 TCN 1.31413 TGA 3.421709 TGC 1.915413 TGG 1.741848 TGT 1.774908 TGN 2.21347 TTA 0.989733 TTC 1.770775 TTG 0.595080 TTT 2.603474 TTN 1.48977 TNA 2.05385 TNC 1.63544 TNG 1.06567 TNT 1.86892 TNN 1.65597 NAA 1.86221 NAC 0.892103 NAG 0.592497 NAT 1.31 NAN 1.1642 NCA 0.962872 NCC 0.760896 NCG 0.599729 NCT 0.747465 NCN 0.767741 NGA 2.00271 NGC 0.986634 NGG 0.87299 NGT 0.999548 NGN 1.21547 NTA 0.563053 NTC 1.00626 NTG 0.350746 NTT 1.49028 NTN 0.852586 NNA 1.34771 NNC 0.911474 NNG 0.603991 NNT 1.13682 NNN 1 end consensus type Intron_Corr_Term phase all 225.12 type Intron_Corr_Term phase 0 524.049 type Intron_Corr_Term phase 1 652.388 type Intron_Corr_Term phase 2 998.969 type Intron_emission begin consensus A 1.233115 C 0.595593 G 0.670399 T 1.500893 end consensus type Pyrimidine_emission begin consensus A 0.261549 C 0.869936 G 0.127932 T 2.740583 end consensus type Spacer_emission begin consensus A 1.495231 C 0.607484 G 0.513573 T 1.383712 end consensus type Intron_Stay_Prob 0.988929 type Central_Intron_Stay_Prob 0.983466 type Pyrimidine_Stay_Prob 0.904578 type No_Spacer_Prob 0.0743243 type Spacer_Stay_Prob 0.952081