Mercurial > repos > ufz > omero_get_id

changeset 1:ae07ea142e0f draft

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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/omero commit d69e684236ce5d36a09e84f1eae6d8c98ed7499b
author ufz
date Tue, 29 Oct 2024 06:59:40 +0000
parents c23735b45a4a
children c7b2650718fe
files macros.xml omero_get_id.xml
diffstat 2 files changed, 18 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Oct 22 11:53:30 2024 +0000
+++ b/macros.xml	Tue Oct 29 06:59:40 2024 +0000
@@ -44,4 +44,13 @@
 }
         ]]></configfile>
     </xml>
+
+    <token name="@SECURITY_DISCLAIMER@">
+    **OMERO-suite Security Diclaimer:** To utilize the OMERO tools, the user must trust Galaxy instances.
+    The configuration file, which contains your OMERO password and username, is stored in the job working directory.
+    This directory only exists during the runtime of the job and should only be accessible by the system user that runs the job.
+    However, please be aware that your username and password may be exposed to users with administrative rights.
+    We are working on increasing the security of the OMERO suite
+    </token>
+
 </macros>
\ No newline at end of file
--- a/omero_get_id.xml	Tue Oct 22 11:53:30 2024 +0000
+++ b/omero_get_id.xml	Tue Oct 29 06:59:40 2024 +0000
@@ -162,15 +162,23 @@
 
 Tool to fetch project, dataset, images, annotations, tags, table and ROIs IDs user defined OMERO.server.
 
-Options:
+**Options**:
+
 Project -> Project IDs present in the OMERO.server
+
 Dataset -> Dataset IDs present in a specific Project or in the server
+
 Image -> Image IDs present in a specific Dataset or Project or Well or Plate or in the server
+
 Annotation (Key-Value Pairs) -> Annotation IDs linked to an Image or Dataset or Project or Well or Plate
+
 Tag -> Tag IDs linked to an Image or Dataset or Project or Well or Plate
+
 ROI -> ROI IDs linked to an Image
+
 Table -> Table linked to an Image or Dataset or Project or Well or Plate
 
+@SECURITY_DISCLAIMER@
     </help>
     <citations>
         <citation type="doi">10.1038/nmeth.1896</citation>