Mercurial > repos > ulfschaefer > phe_samtools_mpileup

changeset 11:714a4c13d64c draft

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Uploaded
author ulfschaefer
date Mon, 21 Dec 2015 10:17:56 -0500
parents f78ed0f61f52
children c3f2ecec9fb8
files phe_samtools_mpileup.xml
diffstat 1 files changed, 5 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/phe_samtools_mpileup.xml	Mon Dec 21 10:17:45 2015 -0500
+++ b/phe_samtools_mpileup.xml	Mon Dec 21 10:17:56 2015 -0500
@@ -4,6 +4,11 @@
       <requirement type="package" version="1.1">samtools</requirement>
       <requirement type="package" version="1.3">bcftools</requirement>
   </requirements>
+  <stdio>
+    <!-- Assume anything other than zero is an error -->
+    <exit_code range="1:" />
+    <exit_code range=":-1" />
+  </stdio>
   <command interpreter="bash">
     phe_samtools_mpileup.sh $input_bam $ref_file $outvcf
   </command>