Mercurial > repos > vimalkumarvelayudhan > riboplot
annotate docs/installation.rst @ 19:6e3b13906b54
Use packages from the test toolshed. Add bedtools dependency
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
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date | Fri, 28 Aug 2015 11:07:26 +0100 |
parents | 628f82e72d72 |
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3 | 1 ============ |
2 Installation | |
3 ============ | |
4 At the command line:: | |
5 | |
6 $ easy_install riboplot | |
7 | |
8 Or, if you have virtualenvwrapper installed:: | |
9 | |
10 $ mkvirtualenv riboplot | |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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11 $ pip install riboplot |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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12 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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13 .. note:: |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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14 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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15 RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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16 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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17 This release of riboplot has been tested with bedtools version ``2.17.0``. |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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18 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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19 On Ubuntu and derivatives, bedtools can be installed from the repositories using:: |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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20 |
628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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21 sudo apt-get install bedtools |