Mercurial > repos > vimalkumarvelayudhan > riboplot

view docs/installation.rst @ 19:6e3b13906b54

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Use packages from the test toolshed. Add bedtools dependency
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Fri, 28 Aug 2015 11:07:26 +0100
parents 628f82e72d72
children
line wrap: on
line source

============
Installation
============
At the command line::

    $ easy_install riboplot

Or, if you have virtualenvwrapper installed::

    $ mkvirtualenv riboplot
    $ pip install riboplot

.. note:: 

    RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. 
    
    This release of riboplot has been tested with bedtools version ``2.17.0``.

    On Ubuntu and derivatives, bedtools can be installed from the repositories using::

        sudo apt-get install bedtools