Mercurial > repos > vimalkumarvelayudhan > riboplot
view README.rst @ 28:60bbd8ebe314
Working install (virtualenv)
author | Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com> |
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date | Wed, 02 Sep 2015 14:25:18 +0100 |
parents | cff63cf0dea8 |
children | fb64b970da25 |
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======== RiboPlot ======== .. image:: https://img.shields.io/travis/vimalkumarvelayudhan/riboplot.svg :target: https://travis-ci.org/vimalkumarvelayudhan/riboplot .. image:: https://img.shields.io/pypi/v/riboplot.svg :target: https://pypi.python.org/pypi/riboplot RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format). There are two programs in the package: **riboplot** Plot and output read counts (csv) for a single transcript. **ribocount** Output read counts for all transcripts in an alignment. Free software: GPL license Documentation: https://riboplot.readthedocs.org Repository: https://github.com/vimalkumarvelayudhan/riboplot .. note:: RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. This release of riboplot has been tested with bedtools version ``2.17.0``. On Ubuntu and derivatives, bedtools can be installed from the repositories using:: sudo apt-get install bedtools