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Working install (virtualenv)
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Wed, 02 Sep 2015 14:25:18 +0100
parents cff63cf0dea8
children fb64b970da25
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========
RiboPlot
========

.. image:: https://img.shields.io/travis/vimalkumarvelayudhan/riboplot.svg
        :target: https://travis-ci.org/vimalkumarvelayudhan/riboplot

.. image:: https://img.shields.io/pypi/v/riboplot.svg
        :target: https://pypi.python.org/pypi/riboplot


RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

There are two programs in the package:

**riboplot**

    Plot and output read counts (csv) for a single transcript.

**ribocount**

    Output read counts for all transcripts in an alignment.

Free software: GPL license

Documentation: https://riboplot.readthedocs.org

Repository: https://github.com/vimalkumarvelayudhan/riboplot


.. note::

    RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. 

    This release of riboplot has been tested with bedtools version ``2.17.0``.

    On Ubuntu and derivatives, bedtools can be installed from the repositories using::

        sudo apt-get install bedtools