Mercurial > repos > yating-l > multi_fasta_glimmer_hmm

view tool_dependencies.xml @ 1:6618d16f276c draft

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planemo upload for repository https://github.com/remimarenco/multi_fasta_glimmerhmm.git commit 5594d470c65c83b5b620681db44b1975bd218581-dirty
author yating-l
date Mon, 01 May 2017 17:44:12 -0400
parents b07a805758cc
children ae0b24f726c3
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<?xml version="1.0"?>
<tool_dependency>
    <package name="glimmerhmm" version="3.0.4">
        <install version="1.0">
            <actions_group>
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>                       
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action> 
                    <action type="move_file" rename_to="glimmerhmm">
                        <source>$INSTALL_DIR/bin/glimmerhmm_linux_x86_64</source>
                        <destination>$INSTALL_DIR/bin</destination>
                    </action> 
                    <action type="set_environment">
                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    </action>  
                </actions>
            </actions_group>
         </install>
         <readme>GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). https://ccb.jhu.edu/software/glimmerhmm/</readme>
    </package>
    
</tool_dependency>