Mercurial > repos > yating-l > multi_fasta_glimmer_hmm
view tool_dependencies.xml @ 0:b07a805758cc draft
planemo upload for repository https://github.com/remimarenco/multi_fasta_glimmerhmm.git commit 1245031a7d52c922c86f33ebfd0f20eb9ddf84ac-dirty
author | yating-l |
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date | Mon, 01 May 2017 15:29:33 -0400 |
parents | |
children | 6618d16f276c |
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<?xml version="1.0"?> <tool_dependency> <package name="glimmerhmm" version="3.0.4"> <install version="1.0"> <actions_group> <actions architecture="x86_64" os="linux"> <action type="download_by_url">ftp://ccb.jhu.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.4.tar.gz</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR</destination_directory> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> </action> <action type="shell_command"> mv $INSTALL_DIR/bin/glimmerhmm_linux_x86_64 $INSTALL_DIR/bin/glimmerhmm </action> </actions> </actions_group> </install> <readme>GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). https://ccb.jhu.edu/software/glimmerhmm/</readme> </package> </tool_dependency>