annotate SMART/DiffExpAnal/listInputs.xml @ 18:94ab73e8a190

Uploaded
author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1 <tool id="listInputs" name="listInputs">
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2 <description>Give a list of input files from different conditions/groups for DESeq analysis, DESeq can then charge these input files from the given list.</description>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3 <command interpreter="perl"> listInputs.pl $inputFromGroup1 $inputFromGroup2 $output
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4 </command>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6 <inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7 <param name="inputFromGroup1" type="data" format="tabular" label="Please choose your file from group1."/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8 <param name="inputFromGroup2" type="data" format="tabular" label="Please choose your file from group2."/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
9 </inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11 <outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12 <data format="txt" name="output" label="listInputs Output"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13 </outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15 <help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16 This tool can facilate the the chargement for DESeq tool.
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17 Example:
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
18 From group1, we have input1.
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
19 From group2, we have input2.
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
20 This tool will give us a list like:
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
21 fileID=1 input1 group1
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
22 fileID=2 input2 group2
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
23 Where the value of fileID is unique for each input file.
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
24 </help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
25 </tool>