| Previous changeset 2:6fd16fad465d (2018-08-06) Next changeset 4:2b093007fab9 (2021-11-21) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinotate commit 7d7285e1c16a9058178a51c804409319e6685454" |
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modified:
test-data/trinotate_annotation_report.xls test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls trinotate.xml |
| b |
| diff -r 6fd16fad465d -r 4383070d29ed test-data/trinotate_annotation_report.xls --- a/test-data/trinotate_annotation_report.xls Mon Aug 06 06:52:04 2018 -0400 +++ b/test-data/trinotate_annotation_report.xls Fri Aug 14 16:54:16 2020 -0400 |
| [ |
| b'@@ -1,249 +1,249 @@\n-#gene_id\ttranscript_id\tsprot_Top_BLASTX_hit\tRNAMMER\tprot_id\tprot_coords\tsprot_Top_BLASTP_hit\tPfam\tSignalP\tTmHMM\teggnog\tKegg\tgene_ontology_blast\tgene_ontology_pfam\ttranscript\tpeptide\n-TRINITY_DN596_c0_g1\tTRINITY_DN596_c0_g1_i1\tYB92_SCHPO^YB92_SCHPO^Q:102-1910,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN596_c0_g1_i1|m.607\t102-1913[+]\tYB92_SCHPO^YB92_SCHPO^Q:1-603,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPBC1E8.02\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\t.\t.\t.\n-TRINITY_DN549_c0_g1\tTRINITY_DN549_c0_g1_i1\tGAA1_SCHPO^GAA1_SCHPO^Q:2-1363,H:121-574^100%ID^E:0^RecName: Full=GPI transamidase component gaa1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN549_c0_g1_i1|m.608\t2-1387[+]\tGAA1_SCHPO^GAA1_SCHPO^Q:1-461,H:121-581^100%ID^E:0^RecName: Full=GPI transamidase component gaa1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\tExpAA=140.37^PredHel=6^Topology=i247-269o284-302i309-331o346-368i381-403o428-450i\t.\tKEGG:spo:SPAC1002.11`KO:K05289\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0042765^cellular_component^GPI-anchor transamidase complex`GO:0016255^biological_process^attachment of GPI anchor to protein\t.\t.\t.\n-TRINITY_DN594_c0_g1\tTRINITY_DN594_c0_g1_i1\tERG27_SCHPO^ERG27_SCHPO^Q:1275-349,H:46-338^94.82%ID^E:0^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN594_c0_g1_i1|m.612\t346-1275[-]\tERG27_SCHPO^ERG27_SCHPO^Q:1-309,H:46-338^94.82%ID^E:0^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPBC1709.07`KO:K09827\tGO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0005811^cellular_component^lipid droplet`GO:0005741^cellular_component^mitochondrial outer membrane`GO:0000253^molecular_function^3-keto sterol reductase activity`GO:0006696^biological_process^ergosterol biosynthetic process\t.\t.\t.\n-TRINITY_DN594_c0_g2\tTRINITY_DN594_c0_g2_i1\tERG27_SCHPO^ERG27_SCHPO^Q:1207-680,H:46-205^90.91%ID^E:2e-141^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`ERG27_SCHPO^ERG27_SCHPO^Q:681-349,H:228-338^100%ID^E:2e-141^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN594_c0_g2_i1|m.614\t346-651[-]\tERG27_SCHPO^ERG27_SCHPO^Q:1-101,H:238-338^100%ID^E:7e-68^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPBC1709.07`KO:K09827\tGO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0005811^cellular_component^lipid droplet`GO:0005741^cellular_component^mit'..b'ycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPAC890.06`KO:K14312\tGO:0005737^cellular_component^cytoplasm`GO:0005635^cellular_component^nuclear envelope`GO:0005643^cellular_component^nuclear pore`GO:0044611^cellular_component^nuclear pore inner ring`GO:0017056^molecular_function^structural constituent of nuclear pore`GO:0006606^biological_process^protein import into nucleus`GO:0036228^biological_process^protein localization to nuclear inner membrane`GO:0006405^biological_process^RNA export from nucleus`GO:0006407^biological_process^rRNA export from nucleus`GO:0000972^biological_process^transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery\tGO:0005737^cellular_component^cytoplasm`GO:0005635^cellular_component^nuclear envelope`GO:0005643^cellular_component^nuclear pore`GO:0044611^cellular_component^nuclear pore inner ring`GO:0017056^molecular_function^structural constituent of nuclear pore`GO:0006606^biological_process^protein import into nucleus`GO:0036228^biological_process^protein localization to nuclear inner membrane`GO:0006405^biological_process^RNA export from nucleus`GO:0006407^biological_process^rRNA export from nucleus`GO:0000972^biological_process^transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery\t.\t.\t.\n+TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8862\t1057-1950[-]\tRNG3_SCHPO^RNG3_SCHPO^Q:1-297,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.04c`KO:K21991\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\t.\t.\t.\n+TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8863\t2-619[+]\tYCS3_SCHPO^YCS3_SCHPO^Q:17-205,H:1-189^100%ID^E:3e-137^RecName: Full=Uncharacterized calcium-binding protein C613.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.03\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005788^cellular_component^endoplasmic reticulum lumen`GO:0005793^cellular_component^endoplasmic reticulum-Golgi intermediate compartment`GO:0005794^cellular_component^Golgi apparatus`GO:0005796^cellular_component^Golgi lumen`GO:0005509^molecular_function^calcium ion binding\t.\t.\t.\n' |
| b |
| diff -r 6fd16fad465d -r 4383070d29ed test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls --- a/test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls Mon Aug 06 06:52:04 2018 -0400 +++ b/test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls Fri Aug 14 16:54:16 2020 -0400 |
| [ |
| b'@@ -1,249 +1,249 @@\n-#gene_id\ttranscript_id\tsprot_Top_BLASTX_hit\tRNAMMER\tprot_id\tprot_coords\tsprot_Top_BLASTP_hit\tPfam\tSignalP\tTmHMM\teggnog\tKegg\tgene_ontology_blast\tgene_ontology_pfam\ttranscript\tpeptide\n-TRINITY_DN596_c0_g1\tTRINITY_DN596_c0_g1_i1\tYB92_SCHPO^YB92_SCHPO^Q:102-1910,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN596_c0_g1_i1|m.607\t102-1913[+]\tYB92_SCHPO^YB92_SCHPO^Q:1-603,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPBC1E8.02\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\t.\tTGTGATTCGTGCCGCTCAACATTTCTTCAAGTGATTCCTAACATTGCTGTACATTCTCTTGAAAAGCGTTTTAACCTTTTCAATTCTGAAACTTGTAAAGAATGTCAGAGTATCGTATTCGAGTGACAACTGTGGACCAGAAGGTTGGTATTTTTCAAGTTCCTAGGACAAAAACGGTTTTAGAATTAAAGGAACTGATTGCTGTAACATTTGAAGCTCCTGCAGATCGATTAAAGTTGATTCACGCTGGTCGTGTATTGAGGAATGAAACTCCCCTCGAGGAAATTTTGCATGACGCTACTGATCTGGTCACTTTTCATCTTGTAATTGCGGTTTTTAATTCTACAAGCACAACCTTGCCATCAGCGACATCATCTTCTGTTCCTCAAAGTAGGACCAGCGAATTATCATCGACTAATTCAATTCCAACTCCTCGAATCACCAGTTTGAACCCGGAAGAATTGTCAAGACGTGAACGTGCCCAACGTTTATTACAGACATACAACAGTTTCCATGGATCTGGCTTAGGAGGACTTTTTCCAAACATACACCGGGAACTAGAAAGTCACGGATTTTCATTGCCAACCCATGAGCAATCATCACCCGTTGCTGAATCTCTGGATAATTCGGTATCGTCTGCTTTATCTCCACATTTGGAAACGCTGCGTCGCCGCAATCTCAGTATTCATCATCAACATATACAAGCTCACGAAATGGCACAAGAGTCCTTGGAGACCAGAAATCCAGGAAACATTTCTTCCTCGAGTGCTCCTTTAGCTAGTGATCAATCCCCGACTGTATCATCTAACCATATCCATGCATCCGGTAATTTGGCTTTAGGATCAAATTCGGGGTTAAATCCACGAAGCCCTAATTCTTTTTCTTCCCCATTGGACAATCCTGCACTTCATACTGTTGACTCAACCAACGTCAATGGTTCGCTTTCACCTCTATCAAATTCTTCATCTATCAATCAAGTTCACCAAAATGAAACTCATGGTTCTACCATCTCAGTACCTAACCCGAACTTAAGTCAAATGGGCCCTTCACACTCTTCTTCTGTGCCCTCAAATCTGTCACCAAATCCTGCCCAAAATGAAAATCCTAGTACAACCTCTATTCCATCAATAAATAATCAACCATTCCCGTCTGGTCTTTCTGCTTCTAACTCTAATTTTGCCTCTTCCTCGTTTATCCCTCAGAGCGTTCCGCAACTATTGCCTATATATTATCAAACTATCTTTTACAACGGTAACTATTATTTACAGCAGCTCCCATCTGCATCGCCTCCCACTATGTTTCGAGATCACTCATTTGCTCCTTTAGTTTCCCCTTCTATTGTTTCTCCGTATGGTGTTTTAGAAAATGAAGAAACTGGCGAATGTGCCTTTTTGTTTTCACCAAATGCCTCCCAACCCCATTTTCAGCCGAGAGCCCCCACGTTTGGCATTCCACGAAATGTGAGATCCCTCTTCACCTTACCGTTCTTCCATACTATCCGTAATATTGAGAGACATTTCCGATTATTTATTCGTTTAGCCCTGTTTTGTGTATTAACGACTTATAATGTTTCTCTCTCACAAACAATTTTGCTAACATCTATAATGTCTGTTGTGTTTTTGTTACAGACCGGTGCTCTAGCTCCATTCATCAATGACAATCCACTCATCCAGTCTGGTATGCGTCATATTCGTAATCTTCAAGATGAATACCGGCGGCGTCGAAACCGAACGGCTCAAAGAGTAGTTGAAATTCCTAATGAGACACAGACTGAAGATGAACAAGATGGTACAAATACGCCGGATAATAGGGCTGACGCTGAAGAACGCGAACTAACTCGAAGTCAAAGAATATACCGGACGGTAGTAAGAACCATAGTTGCCTTCGCATTAAGCTTTGTACCTCGAGCGTAACATTTTTTTCTTAAAAACAAAAGTGATAATATAGCTGTAAAGTCATTTTTCATTACTAATTAGAAATATTGTCTAAGCTTGCTATTAATAAAAGAGTTCTAGCTAGACTAAATTTTGACAGTGTCGAAATATCATTCCAAGGTACCCCATCAGATTAACAAATTTATAA\tMSEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTFHLVIAVFNSTSTTLPSATSSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIHRELESHGFSLPTHEQSSPVAESLDNSVSSALSPHLETLRRRNLSIHHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVSSNHIHASGNLALGSNSGLNPRSPNSFSSPLDNPALHTVDSTNVNGSLSPLSNSSSINQVHQNETHGSTISVPNPNLSQMGPSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPFPSGLSASNSNFASSSFIPQSVPQLLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAPLVSPSIVSPYGVLENEETGECAFLFSPNASQPHFQPRAPTFGIPRNVRSLFTLPFFHTIRNIERHFRLFIRLALFCVLTTYNVSLSQTILLTSIMSVVFLLQTGALAPFINDNPLIQSGMRHIRNLQDEYRRRRNRTAQRVVEIPNETQTEDEQDGTNTPDNRADAEERELTRSQRIYRTVVRTIVAFALSFVPRA*\n-TRINITY_DN549_c0_g1\tTRINITY_DN549_c0_g1_i1\tGAA1_SCHPO^GAA1_SCHPO^Q:2-1363,H:121-574^100%ID^E:0^RecName: Full=GPI transamidase compone'..b'TTAGTAAATATACTATGAGGAGCCACACTGATAAGAATTTTCGCTAATGCAAAAGCCGCATTCGAATCCTGGGTTTGGATAAAACATTGTCTAGTAAGGAATTTCAATGCACCTATTTGTACTAGCTTGCGACGTGCCAGCTTGTAATTAGCCATGTGTACAAGTATCATTGCTAATAACCCGTTTAGGCTATTATAGTGCTTGGCCGCTGAAAAGAGTTTTGAC\tSKLFSAAKHYNSLNGLLAMILVHMANYKLARRKLVQIGALKFLTRQCFIQTQDSNAAFALAKILISVAPHSIFTKAFPSNRAIHPMSKLLSTNSADTEYPILLGKFEVLLALTNLASHDEESRQAIVQECWRELDELIIETNPLIQRATTELINNLSLSPYCLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLAACGILVQITSVDEGCKKILSLQNDFNYIVRMLTDQDEGIQHRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQAALKELQHEALVMIDSRLQGSK*\n+TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8863\t2-619[+]\tYCS3_SCHPO^YCS3_SCHPO^Q:17-205,H:1-189^100%ID^E:3e-137^RecName: Full=Uncharacterized calcium-binding protein C613.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.03\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005788^cellular_component^endoplasmic reticulum lumen`GO:0005793^cellular_component^endoplasmic reticulum-Golgi intermediate compartment`GO:0005794^cellular_component^Golgi apparatus`GO:0005796^cellular_component^Golgi lumen`GO:0005509^molecular_function^calcium ion binding\t.\tAGAACTTGACCGCAGCGCACATCAACTACACCTTGAGGCAATTCAAAATATGAAGTTTTCTACCGTAGGGTTTTTGTTTTCAACAATTTTATTCAAAAGTGCGTTTGCAGGATGGATGGATACACACATGAAAGATGAACATCACATTGATAAGTACACAGATGAATCTTTTTTTCGTCTTCACGATTTAGGAAAAAAGGGATACTGGTCAGATCAAGATATACTTAGTTTATATGGATTATTTGAAAATGATGAGGTCCCATTCGTCAAAAAGAATGAGGTTTTGGTTGATGTTCTAAAAAAATGCGATCCATCGGGCAATCGCCGGATAACACTTGATGAATTTCTTGCATTTCGTAAAAATGGAGGAGAGTTAACGGATTTTGGATTTCCAGGGCACCATGGTGATGAGGAAGAGGAATTTGAAATGCATCATGTGGAAAAATATCACCCAGCTGGCCTCGATGAACCAGATGAAAACTGGAATCATCCTGAAGATATCGAACATTTTCAAAAACACGATGAGATATTTCATGGTGATAAGAAACCTGAGGAACGACGCAAACATTTTGTAAAATACAATAATATCCCTGACAAGTATCGTCGTGTGAGCATTTAAATTTTCCCATTGATAGATTTACTTGCTTCTCCTTGGGACGTTTTATTTTTATTTTTATTTTTCCGTTTATTTTTGGATTGTCGTGTTCCGATATATATCCGTGTTTACAAACAATAGCTTCAACATTTTTGAACGGGTCCTTCCAATACTAATGCCATATCTTATTTCTTTGTCAATACAAAATCACTTTTGTTCGTTAAACTCATTTTGGTTTGCAGATATTATCATATTCTTACCAATTATACATACACTCACAATTTGTTTTACATTTCCGCTCCCTTCTTCAATAAGCTGATTGCTTATAAAAAATCAAACATTCATATGATTCAAGTTCAAATATTATCATCTGAAAACTGACAAGTTCCATTCATTACTATATTAATATCATTTATTCGTTAAACCGATATCATTAAAAATGGAAAATTAAAGAAATCAATTCATTTGCTTCCTTGAAGTCTAGAGTCGATCATAACGAGAGCTTCATGTTGAAGCTCTTTAAGTGCAGCTTGCTTAGTAATATAAGTGCGTAATGTTTCAACAGCCTTTGGTGTTTTTATGAACTTGTTAAATATTTCTTGATCTTTGGAATATACGATATTGCATATGCAAACTAATCCACGATGTTGAATTCCTTCATCTTGGTCGGTTAACATTCTGACTATGTAGTTAAAATCGTTCTGGAGACTTAAAATTTTCTTGCACCCTTCATCAACACTAGTAATTTGAACAAGAATTCCGCATGCTGCTAATCTCGTGGGAGTGTCTTCGGTATCTGAGAGTGCTAGTACAATGTGTAAACGAGTATTTTCAAAATCCGAGTCCTTGTCTCCTATAAACTTAATTAAGCAATAAGGTGATAAAGAAAGGTTGTTAATAAGTTCCGTGGTTGCCCTCTGAATTAAAGGATTTGTTTCTATAATTAGTTCATCCAATTCTCTCCAACATTCTTGAACTATGGCTTGCCGACTTTCTTCATCATGTGAAGCAAGATTTGTTAGCGCAAGTAACACTTCAAATTTCCCCAAGAGAATTGGATACTCAGTATCAGCAGAATTAGTACTTAGTAACTTTGACATAGGATGAATTGCTCGGTTCGATGGAAACGCCTTAGTAAATATACTATGAGGAGCCACACTGATAAGAATTTTCGCTAATGCAAAAGCCGCATTCGAATCCTGGGTTTGGATAAAACATTGTCTAGTAAGGAATTTCAATGCACCTATTTGTACTAGCTTGCGACGTGCCAGCTTGTAATTAGCCATGTGTACAAGTATCATTGCTAATAACCCGTTTAGGCTATTATAGTGCTTGGCCGCTGAAAAGAGTTTTGAC\tELDRSAHQLHLEAIQNMKFSTVGFLFSTILFKSAFAGWMDTHMKDEHHIDKYTDESFFRLHDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEVLVDVLKKCDPSGNRRITLDEFLAFRKNGGELTDFGFPGHHGDEEEEFEMHHVEKYHPAGLDEPDENWNHPEDIEHFQKHDEIFHGDKKPEERRKHFVKYNNIPDKYRRVSI*\n' |
| b |
| diff -r 6fd16fad465d -r 4383070d29ed trinotate.xml --- a/trinotate.xml Mon Aug 06 06:52:04 2018 -0400 +++ b/trinotate.xml Fri Aug 14 16:54:16 2020 -0400 |
| [ |
| @@ -1,16 +1,14 @@ -<tool id="trinotate" name="Trinotate" version="3.1.1"> +<tool id="trinotate" name="Trinotate" version="3.2.1"> <requirements> - <requirement type="package" version="3.1.1">trinotate</requirement> + <requirement type="package" version="3.2.1">trinotate</requirement> <requirement type="package" version="1.18">gnu-wget</requirement> </requirements> <stdio> <exit_code range="1:" /> </stdio> - <version_command> - <![CDATA[ - Trinotate version 3.1.1 - ]]> - </version_command> + <version_command><![CDATA[ + Trinotate version 3.2.1 + ]]></version_command> <command><![CDATA[ #if str($cond_download.select_download) == "yes": @@ -96,7 +94,6 @@ <param name="tmhmm" ftype="tabular" value="tmhmm.out" /> <param name="signalp" ftype="tabular" value="signalp.out" /> <output name="trinotate_out" file="trinotate_annotation_report.xls" /> - <output name="trinotate_out" file="trinotate_annotation_report.xls" /> </test> <test> <param name="trinity" ftype="fasta" value="Trinity.fasta" /> |