| Previous changeset 7:fc1c7b6fb7b6 (2018-05-15) Next changeset 9:441103f02a11 (2018-05-16) |
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Commit message:
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty |
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modified:
genMutModel.xml |
| b |
| diff -r fc1c7b6fb7b6 -r dc383ecbf839 genMutModel.xml --- a/genMutModel.xml Tue May 15 18:12:29 2018 -0400 +++ b/genMutModel.xml Tue May 15 23:09:17 2018 -0400 |
| [ |
| @@ -14,7 +14,7 @@ #if $in_type.input_type == "built-in": && ln -s ${in_type.reference.fields.path} reference.fa #else: - && ln ${in_type.reference} reference.fa + && ln -s ${in_type.reference} reference.fa #end if && python2 $__tool_directory__/utilities/genMutModel.py -r reference.fa @@ -115,14 +115,14 @@ <outputs> <data format="txt" name="genMutModel_modelfile" - label="${os.path.splitext($mutation_file.name)}_genMutModel.p" + label="${os.path.splitext(str($mutation_file.name))[0]}_genMutModel.p" metadata_source="in_type.reference"> </data> <data format="simple" name="trinuc_file" from_work_dir="reference.fa.trinucCounts" - label="${os.path.splitext($mutation_file.name)}_trinucCounts.tsv" + label="${os.path.splitext(str($mutation_file.name))[0]}_trinucCounts.tsv" metadata_source="in_type.reference"> <filter>misc['save_trinuc']</filter> </data> |