| RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly
interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95X credibility interval estimates for expression levels. For visualization,It can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate. Genomic-coordinate files can be visualized by both UCSC Genome browser and Broad InstituteXs Integrative Genomics Viewer (IGV). Transcript-coordinate files can be visualized by IGV. http://deweylab.biostat.wisc.edu/rsem/README.html http://deweylab.biostat.wisc.edu/rsem/ |
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/rsem
| Name | Version | Type | |
|---|---|---|---|
| bowtie | 1.0.0 | package | |
| rsem | 1.1.17 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 1.1.17 | any | ||
| RNA-Seq by Expectation-Maximization | 1.1.17 | any | |
| extract transcript to gene map from trinity | 1.1.17 | any | |