| Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/variant_analyzer
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Extracts all tags that carry a mutation in the duplex consensus sequence (DCS) | 1.0.1 | 19.01 | |
| Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies | 1.0.1 | 19.01 | |
| Looks for reads with mutation at known positions and calculates frequencies and stats. | 1.0.1 | 19.01 | |