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|
| Name |
Description |
Version |
Minimum Galaxy Version |
|
|
Report CpG rich areas |
5.0.0.1 |
16.01 |
|
|
Predicts potentially antigenic regions of a protein sequence, using the method of Kolaskar and Tongaonkar. |
5.0.0.1 |
16.01 |
|
|
Plots isochores in large DNA sequences |
5.0.0.1 |
16.01 |
|
|
Back translate a protein sequence |
6.6.0 |
16.01 |
|
|
Reports CpG rich region |
5.0.0.1 |
16.01 |
|
|
Bending and curvature plot in B-DNA |
5.0.0 |
16.01 |
|
|
Type in a short new sequence |
5.0.0 |
16.01 |
|
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Replace or delete sequence sections |
5.0.0 |
16.01 |
|
|
Removes carriage return from ASCII files |
5.0.0 |
16.01 |
|
|
Calculates the twisting in a B-DNA sequence |
5.0.0 |
16.01 |
|
|
Exclude a set of sequences and write out the remaining ones |
5.0.0 |
16.01 |
|
|
CAI codon adaptation index |
5.0.0 |
16.01 |
|
|
Writes one sequence from a multiple set of sequences |
5.0.0.1 |
16.01 |
|
|
CAI codon adaptation index using custom codon usage file |
5.0.0 |
16.01 |
|
|
Displays protein hydropathy |
5.0.0.1 |
16.01 |
|
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Create a chaos game representation plot for a sequence |
5.0.0 |
16.01 |
|
|
Find protein sequence regions with a biased composition |
5.0.0.1 |
16.01 |
|
|
Protein charge plot |
5.0.0.1 |
16.01 |
|
|
Looks for inverted repeats in a nucleotide sequence |
5.0.0.1 |
16.01 |
|
|
Reports STOP codons and ORF statistics of a protein |
5.0.0.1 |
16.01 |
|
|
Insert one sequence into another |
5.0.0.1 |
16.01 |
|
|
Codon usage statistics |
5.0.0 |
16.01 |
|
|
Search a protein sequence with a motif |
5.0.0 |
16.01 |
|
|
Draws circular maps of DNA constructs |
5.0.0 |
16.01 |
|
|
Predicts coiled coil regions |
5.0.0.1 |
16.01 |
|
|
Codon usage table comparison |
5.0.0 |
16.01 |
|
|
Plots simple amino acid properties in parallel |
5.0.0.1 |
16.01 |
|
|
Extract CDS, mRNA and translations from feature tables |
5.0.0 |
16.01 |
|
|
Displays proteins as a helical net |
5.0.0 |
16.01 |
|
|
Count composition of dimer/trimer/etc words in a sequence |
5.0.0.1 |
16.01 |
|
|
Protein statistics |
5.0.0 |
16.01 |
|
|
Plot CpG rich areas |
5.0.0 |
16.01 |
|
|
Shows protein sequences as helices |
5.0.0.1 |
16.01 |
|
|
Reports all CpG rich regions |
5.0.0.1 |
16.01 |
|
|
Displays protein hydropathy |
5.0.0.1 |
16.01 |
|
|
Create a codon usage table |
5.0.0 |
16.01 |
|
|
Displays protein hydropathy of a set of sequences |
5.0.0.1 |
16.01 |
|
|
Removes a specified section from a sequence |
5.0.0.1 |
16.01 |
|
|
Plot quality of conservation of a sequence alignment |
5.0.0.1 |
16.01 |
|
|
Calculates DNA RNA/DNA melting temperature |
5.0.0.1 |
16.01 |
|
|
Plot potential open reading frames |
5.0.0 |
16.01 |
|
|
Removes gap characters from sequences |
5.0.0 |
16.01 |
|
|
Displays all-against-all dotplots of a set of sequences |
5.0.0.1 |
16.01 |
|
|
Alter the name or description of a sequence |
5.0.0 |
16.01 |
|
|
Regular expression search of a protein sequence |
5.0.0 |
16.01 |
|
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Find differences between nearly identical sequences |
5.0.0.1 |
16.01 |
|
|
Displays aligned sequences, with colouring and boxing |
5.0.0.1 |
16.01 |
|
|
Protein proteolytic enzyme or reagent cleavage digest |
5.0.0 |
16.01 |
|
|
Output sequence with translated ranges |
5.0.0.1 |
16.01 |
|
|
Displays a thresholded dotplot of two sequences |
5.0.0.1 |
16.01 |
|
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Searches DNA sequences for matches with primer pairs |
5.0.0.1 |
16.01 |
|
|
Non-overlapping wordmatch dotplot of two sequences |
5.0.0.1 |
16.01 |
|
|
Reverse and complement a sequence |
5.0.0 |
16.01 |
|
|
Displays a wordmatch dotplot of two sequences |
5.0.0.1 |
16.01 |
|
|
All-against-all comparison of a set of sequences |
5.0.0.1 |
16.01 |
|
|
Regular expression search of a nucleotide sequence |
5.0.0 |
16.01 |
|
|
Reads and writes sequences |
5.0.0 |
16.01 |
|
|
Finds DNA inverted repeats |
5.0.0.1 |
16.01 |
|
|
Show features of a sequence |
5.0.0.1 |
16.01 |
|
|
Finds PEST motifs as potential proteolytic cleavage sites |
5.0.0.1 |
16.01 |
|
|
Draws linear maps of DNA constructs |
5.0.0.1 |
16.01 |
|
|
Finds tandem repeats |
5.0.0.1 |
16.01 |
|
|
Shuffles a set of sequences maintaining composition |
5.0.0.1 |
16.01 |
|
|
Align EST and genomic DNA sequences |
5.0.0.1 |
16.01 |
|
|
Reports protein signal cleavage sites |
5.0.0.1 |
16.01 |
|
|
Looks for tandem repeats in a nucleotide sequence |
5.0.0.1 |
16.01 |
|
|
Mutate sequence beyond all recognition |
5.0.0.1 |
16.01 |
|
|
Extract features from a sequence |
5.0.0.1 |
16.01 |
|
|
Finds siRNA duplexes in mRNA |
5.0.0 |
16.01 |
|
|
Extract regions from a sequence |
5.0.0 |
16.01 |
|
|
Display a DNA sequence with 6-frame translation and ORFs |
5.0.0+galaxy2 |
16.01 |
|
|
Residue/base frequency table or plot |
5.0.0.1 |
16.01 |
|
|
Reads and writes sequences, skipping first few |
5.0.0.1 |
16.01 |
|
|
Nucleic acid pattern search |
5.0.2 |
16.01 |
|
|
Split a sequence into (overlapping) smaller sequences |
5.0.0.1 |
16.01 |
|
|
Protein pattern search |
5.0.0.1 |
16.01 |
|
|
Match large sequences against one or more other sequences |
5.0.0.1 |
16.01 |
|
|
Protein pattern search after translation |
5.0.0.1 |
16.01 |
|
|
Synonymous codon usage Gribskov statistic plot |
5.0.0.1 |
16.01 |
|
|
Predicts protein secondary structure |
5.0.0 |
16.01 |
|
|
Fickett TESTCODE statistic to identify protein-coding DNA |
5.0.0.1 |
16.01 |
|
|
Calculates fractional GC content of nucleic acid sequences |
5.0.0 |
16.01 |
|
|
Search sequence documentation. Slow, use SRS and Entrez! |
5.0.0 |
16.01 |
|
|
Finds and extracts open reading frames (ORFs) |
5.0.0.1 |
16.01 |
|
|
Needleman-Wunsch global alignment |
5.0.0.1 |
16.01 |
|
|
Report nucleic acid binding motifs |
5.0.0.1 |
16.01 |
|
|
Displays membrane spanning regions |
5.0.0 |
16.01 |
|
|
Hydrophobic moment calculation |
5.0.0.1 |
16.01 |
|
|
Align nucleic coding regions given the aligned proteins |
5.0.0 |
16.01 |
|
|
Calculates the isoelectric point of a protein |
5.0.0.1 |
16.01 |
|
|
Translate nucleic acid sequences |
5.0.0 |
16.01 |
|
|
Displays some simple information about sequences |
5.0.0 |
16.01 |
|
|
Finds MAR/SAR sites in nucleic sequences |
5.0.0 |
16.01 |
|
|
Trim poly-A tails off EST sequences |
5.0.0.1 |
16.01 |
|
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Mask off features of a sequence |
5.0.0 |
16.01 |
|
|
Trim ambiguous bits off the ends of sequences |
5.0.0.1 |
16.01 |
|
|
Mask off regions of a sequence |
5.0.0 |
16.01 |
|
|
Finds neighbouring pairs of features in sequences |
5.0.0.1 |
16.01 |
|
|
Finds the best local alignments between two sequences |
5.0.0.1 |
16.01 |
|
|
Reads sequence fragments and builds one sequence |
5.0.0 |
16.01 |
|
|
Merge two large overlapping nucleic acid sequences |
5.0.0.1 |
16.01 |
|
|
Strips out DNA between a pair of vector sequences |
5.0.0.1 |
16.01 |
|
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Merge two overlapping nucleic acid sequences |
5.0.0.1 |
16.01 |
|
|
Smith-Waterman local alignment |
5.0.0.1 |
16.01 |
|
|
Wobble base plot |
5.0.0.1 |
16.01 |
|
|
Counts words of a specified size in a DNA sequence |
5.0.0.1 |
16.01 |
|
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Finds all exact matches of a given size between 2 sequences |
5.0.0.1 |
16.01 |