Repository miniasm
Name: miniasm
Owner: erasmus-medical-center
Synopsis: Miniasm - Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Content homepage: https://github.com/lh3/miniasm
Development repository: https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/miniasm
Link to this repository: https://toolshed.g2.bx.psu.edu/view/erasmus-medical-center/miniasm/f0a2f5a9b637
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/erasmus-medical-center/miniasm
Type: unrestricted
Revision: 1:f0a2f5a9b637
This revision can be installed: True
Times cloned / installed: 181

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Ultrafast de novo assembly for long noisy reads 0.2.0 16.01

Categories
Assembly - Tools for working with assemblies