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Repository gemini_lof_sieve
Owner: iuc
Synopsis: Wrapper for the gemini tool suite: GEMINI lof_sieve
The intent of GEMINI (GEnome MINIing) is to provide a simple, flexible, and powerful framework for exploring genetic variation for
personal and medical genetics. GEMINI is unique in that it integrates genetic variation (from VCF files) with a wealth of genome
annotations into a unified database framework. Using this integrated database as the analysis framework, we aim to leverage the
expressive power of SQL for data analysis, while attempting to overcome the fundamental challenges associated with using databases for
very large (e.g. 1,000,000 variants times 1,000 samples yields one billion genotypes) datasets. In addition, by defining sample
relationships with a PED file, GEMINI allows one to explore and test for variants that meet specific inheritance models (e.g.,
recessive, dominant, etc.).
Type: unrestricted
Revision: 3:90021fffff70
This revision can be installed: True
Times cloned / installed: 647
Dependencies of this repository

Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository data_manager_gemini_database_downloader revision 172815da3d41 owned by iuc
Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc

Name Version Type
gemini 0.18.1 package
tabix 0.2.6 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Filter LoF variants by transcript position and type 16.01

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data