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Repository ceas
Name: ceas
Owner: pjbriggs
Synopsis: CEAS Cis-regulatory Element Annotation System
CEAS can be characterize genome-wide protein-DNA interaction patterns from ChIP-chip and ChIP-Seq of both sharp and broad binding factors.

This tool uses the version of CEAS included in the Cistrome package which can handle bigWig input, and includes a data manager to download or create the gene annotation table files.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/pjbriggs/ceas
Type: unrestricted
Revision: 4:cd6a48ffd093
This revision can be installed: True
Times cloned / installed: 602

Contents of this repository

Name Description Version Minimum Galaxy Version
Annotate intervals and scores with genome features 1.0.2-4 16.01
Fetch and install annotation databases for CEAS 0.0.1 16.01

Name Version Data Tables
ceas_fetch_annotations 0.0.1 ceas_annotations

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis