Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository disco
Name: disco
Owner: iuc
Synopsis: DISCO is a overlap-layout-consensus (OLC) metagenome assembler
DISCO, Distributed Co-assembly of Overlap graphs, is a multi-threaded and multi-process
distributed memory overlap-layout-consensus (OLC) metagenome assembler capable of
assembling various types of Illumina Reads
Content homepage: http://disco.omicsbio.org/
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/disco
Type: unrestricted
Revision: 2:dfefaf2bab95
This revision can be installed: True
Times cloned / installed: 497

Repository README files - may contain important installation or license information

DISCO memory usage

By default, this tool is configured to limit the memory consumption to 4G. You might need to lower this limit if the machine(s) executing the jobs have less memory available. If you have a lot of reads to assemble and a machine with enough memory, you can increase it.

In both cases, you can set the DISCO_MAX_MEMORY environmental variable in the destination section of the job_conf.xml file:

<?xml version="1.0"?>
<!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
<job_conf>
    <plugins>
        <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
    </plugins>
    <handlers>
        <handler id="main"/>
    </handlers>
    <destinations>
        <destination id="local" runner="local">
            <env id="DISCO_MAX_MEMORY">4</env>
        </destination>
    </destinations>
</job_conf>

Contents of this repository

Name Description Version Minimum Galaxy Version
to assemble metagenomics data using an overlap-layout-consensus (OLC) approach 1.2.1 20.01

Categories
Metagenomics - Tools enabling the study of metagenomes
Assembly - Tools for working with assemblies