|DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM
or CRAM format), produces pileup image tensors from them, classifies each tensor using
a convolutional neural network, and finally reports the results in a standard VCF or gVCF file.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/deepvariant
|Minimum Galaxy Version
|deep learning-based variant caller