Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository rsem
Name: rsem
Owner: jjohnson
Synopsis: RNA SEQ by Expectation Maximization
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly 
interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, 
variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95X credibility interval estimates for expression levels. 
For visualization,It can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate. Genomic-coordinate files 
can be visualized by both  UCSC Genome browser and Broad InstituteXs Integrative Genomics Viewer (IGV). 
Transcript-coordinate files can be visualized by IGV.
Clone this repository: hg clone
Type: unrestricted
Revision: 5:14267d364365
This revision can be installed: True
Times cloned / installed: 1635
Dependencies of this repository

Repository rsem_datatypes revision 77151afcd323 owned by jjohnson
Repository package_rsem_1_1_17 revision cd7f70d4c687 owned by jjohnson
Repository package_bowtie_1_0_0 revision 9fcaaedbbfd6 owned by iuc

Name Version Type
bowtie 1.0.0 package
rsem 1.1.17 package

Contents of this repository

Name Description Version Minimum Galaxy Version
1.1.17 any
RNA-Seq by Expectation-Maximization 1.1.17 any
extract transcript to gene map from trinity 1.1.17 any

RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis