| Trinity represents a method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data https://github.com/trinityrnaseq/trinityrnaseq |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinity
| Name | Version | Type | |
|---|---|---|---|
| bowtie | 1.1.2 | package | |
| bowtie2 | 2.2.6 | package | |
| deseq2 | 1.10.0 | package | |
| edger | 3.12.0 | package | |
| express | 1.5.1 | package | |
| limma | 3.28.2 | package | |
| rsem | 1.2.28 | package | |
| samtools | 1.2 | package | |
| TRINITY_MEM_OPTIONS | set_environment | ||
| trinity | 2.1.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| for a de novo assembly of RNA-Seq data by Trinity | 2.1.1 | any | |
| using a Trinity assembly | 2.1.1.1 | any | |
| de novo assembly of RNA-Seq data | 2.1.1.1 | any | |
| for transcript quantification | 2.1.1 | any | |
| on a de novo assembly of RNA-Seq data | 2.1.1.1 | any | |