Mercurial > repos > artbio > mutational_patterns
changeset 0:924c527fb379 draft
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/mutational_patterns commit e1f3ca871f13569401f41a5af9d0e281bf372540"
| author | artbio |
|---|---|
| date | Sun, 13 Sep 2020 18:40:29 +0000 |
| parents | |
| children | 921c1f55481d |
| files | mutational_patterns.R mutational_patterns.xml test-data/EGF037F.vcf test-data/EGF089.vcf test-data/EGF167.vcf test-data/levels.tab test-data/output.pdf |
| diffstat | 7 files changed, 13411 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mutational_patterns.R Sun Sep 13 18:40:29 2020 +0000 @@ -0,0 +1,126 @@ +# load packages that are provided in the conda env +options( show.error.messages=F, + error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } ) +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") +warnings() +library(optparse) +library(rjson) +library(MutationalPatterns) +library(ggplot2) + +# Arguments +option_list = list( + make_option( + "--inputs", + default = NA, + type = 'character', + help = "json formatted dictionary of datasets and their paths" + ), + make_option( + "--genome", + default = NA, + type = 'character', + help = "genome name in the BSgenome bioconductor package" + ), + make_option( + "--levels", + default = NA, + type = 'character', + help = "path to the tab separated file describing the levels in function of datasets" + ), + make_option( + "--signum", + default = 2, + type = 'integer', + help = "selects the N most significant signatures in samples to express mutational patterns" + ), + make_option( + "--output", + default = NA, + type = 'character', + help = "path to output dataset" + ) +) + +opt = parse_args(OptionParser(option_list = option_list), + args = commandArgs(trailingOnly = TRUE)) + +json_dict <- opt$inputs +parser <- newJSONParser() +parser$addData(json_dict) +fileslist <- parser$getObject() +vcf_files <- attr(fileslist, "names") +sample_names <- unname(unlist(fileslist)) +pdf(opt$output, paper = "special", width = 11.69, height = 11.69) +ref_genome <- opt$genome +library(ref_genome, character.only = TRUE) + +# Load the VCF files into a GRangesList: +vcfs <- read_vcfs_as_granges(vcf_files, sample_names, ref_genome) +levels_table <- read.delim(opt$levels, header=FALSE, col.names=c("sample_name","level")) +vcf_table <- data.frame(path=vcf_files, sample_name=sample_names) +metadata_table <- merge(vcf_table, levels_table, by.x=2, by.y=1) +levels <- metadata_table$level +muts = mutations_from_vcf(vcfs[[1]]) +types = mut_type(vcfs[[1]]) +context = mut_context(vcfs[[1]], ref_genome) +type_context = type_context(vcfs[[1]], ref_genome) +type_occurrences <- mut_type_occurrences(vcfs, ref_genome) +# p1 <- plot_spectrum(type_occurrences) +# p2 <- plot_spectrum(type_occurrences, CT = TRUE) +# p3 <- plot_spectrum(type_occurrences, CT = TRUE, legend = FALSE) +# +# plot(p2) +# p4 <- plot_spectrum(type_occurrences, by = levels, CT = TRUE, legend = TRUE) +# palette <- c("pink", "orange", "blue", "lightblue", "green", "red", "purple") +# p5 <- plot_spectrum(type_occurrences, CT=TRUE, legend=TRUE, colors=palette) +# +# plot(p4) +mut_mat <- mut_matrix(vcf_list = vcfs, ref_genome = ref_genome) +# plot_96_profile(mut_mat[,1:length(as.data.frame(mut_mat))], condensed = TRUE) +mut_mat <- mut_mat + 0.0001 +# library("NMF") +# estimate <- nmf(mut_mat, rank=2:5, method="brunet", nrun=100, seed=123456) +# plot(estimate) +# nmf_res <- extract_signatures(mut_mat, rank = 4, nrun = 100) +# colnames(nmf_res$signatures) <- c("Signature A", "Signature B", "Signature C", "Signature D") +# rownames(nmf_res$contribution) <- c("Signature A", "Signature B", "Signature C", "Signature D") +# plot_96_profile(nmf_res$signatures, condensed = TRUE) +sp_url <- paste("https://cancer.sanger.ac.uk/cancergenome/assets/", "signatures_probabilities.txt", sep = "") +cancer_signatures = read.table(sp_url, sep = "\t", header = TRUE) +new_order = match(row.names(mut_mat), cancer_signatures$Somatic.Mutation.Type) +cancer_signatures = cancer_signatures[as.vector(new_order),] +row.names(cancer_signatures) = cancer_signatures$Somatic.Mutation.Type +cancer_signatures = as.matrix(cancer_signatures[,4:33]) +# plot_96_profile(cancer_signatures, condensed = TRUE, ymax = 0.3) +hclust_cosmic = cluster_signatures(cancer_signatures, method = "average") +cosmic_order = colnames(cancer_signatures)[hclust_cosmic$order] +# plot(hclust_cosmic) +cos_sim(mut_mat[,1], cancer_signatures[,1]) +cos_sim_samples_signatures = cos_sim_matrix(mut_mat, cancer_signatures) +plot_cosine_heatmap(cos_sim_samples_signatures, col_order = cosmic_order, cluster_rows = TRUE) +fit_res <- fit_to_signatures(mut_mat, cancer_signatures) +threshold <- tail(sort(unlist(rowSums(fit_res$contribution), use.names = FALSE)), opt$signum)[1] +select <- which(rowSums(fit_res$contribution) >= threshold) # ensure opt$signum best signatures in samples are retained, the others discarded +plot_contribution(fit_res$contribution[select,], cancer_signatures[,select], coord_flip = T, mode = "absolute") +plot_contribution(fit_res$contribution[select,], cancer_signatures[,select], coord_flip = T, mode = "relative") +plot_contribution_heatmap(fit_res$contribution, cluster_samples = TRUE, method = "complete") + + +sig5data <- as.data.frame(t(head(fit_res$contribution[select,]))) +colnames(sig5data) <- gsub("nature", "", colnames(sig5data)) +sig5data_percents <- sig5data / (apply(sig5data,1,sum)) * 100 +sig5data_percents$sample <- rownames(sig5data_percents) +library(reshape2) +melted_sig5data_percents <-melt(data=sig5data_percents) +melted_sig5data_percents$label <- sub("Sig.", "", melted_sig5data_percents$variable) +melted_sig5data_percents$pos <- cumsum(melted_sig5data_percents$value) - melted_sig5data_percents$value/2 +ggplot(melted_sig5data_percents, aes(x="", y=value, group=variable, fill=variable)) + + geom_bar(width = 1, stat = "identity") + + geom_text(aes(label = label), position = position_stack(vjust = 0.5), color="black", size=3) + + coord_polar("y", start=0) + facet_wrap(~ sample) + + labs(x="", y="Samples", fill = "Signatures (Cosmic_v2,March 2015)") + + theme(axis.text = element_blank(), + axis.ticks = element_blank(), + panel.grid = element_blank()) +dev.off()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mutational_patterns.xml Sun Sep 13 18:40:29 2020 +0000 @@ -0,0 +1,106 @@ +<tool id="mutational_patterns" name="Analyse Mutational Patters/Signatures" version="2.0.0_galaxy_1"> + <description>from genomic variations in vcf files</description> + <requirements> + <requirement type="package" version="2.0.0=r40_0">bioconductor-mutationalpatterns</requirement> + <requirement type="package" version="1.6.6=r40h6115d3f_1">r-optparse</requirement> + <requirement type="package" version="0.2.20=r40h0357c0b_1002">r-rjson</requirement> + <requirement type="package" version="0.21.0=r40h0357c0b_1004">r-nmf</requirement> + <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg38</requirement> + <requirement type="package" version="0.99.1=r40_4">bioconductor-bsgenome.hsapiens.1000genomes.hs37d5</requirement> + <requirement type="package" version="1.4.3=r40_0">bioconductor-bsgenome.hsapiens.ucsc.hg19</requirement> + <requirement type="package" version="1.3.1000=r40_4">bioconductor-bsgenome.hsapiens.ncbi.grch38</requirement> + <!-- install bioconda genomes + bioconductor-bsgenome.mmusculus.ucsc.mm9 + bioconductor-bsgenome.mmusculus.ucsc.mm10 --> + </requirements> + <stdio> + <exit_code range="1:" level="fatal" description="Tool exception" /> + </stdio> + + <command detect_errors="exit_code"><![CDATA[ +#import json +#import os +Rscript $__tool_directory__/mutational_patterns.R + --inputs + #set $filename_to_element_identifiers = {} + #for $sample in $vcfs: + $filename_to_element_identifiers.__setitem__(str($sample), $sample.element_identifier) + #end for + '#echo json.dumps(filename_to_element_identifiers)#' + --genome '$genome' + --levels '$levels' + --signum '$signum' + --output '$output' + +]]></command> + <inputs> + <param name="vcfs" type="data_collection" format="vcf" label="VCF file(s) collection" multiple="true"/> + <param name="genome" type="select" label="Reference Genome"> + <option value="BSgenome.Hsapiens.1000genomes.hs37d5">BSgenome.Hsapiens.1000genomes.hs37d5</option> + <option value="BSgenome.Hsapiens.NCBI.GRCh38">BSgenome.Hsapiens.NCBI.GRCh38</option> + <option value="BSgenome.Hsapiens.UCSC.hg19">BSgenome.Hsapiens.UCSC.hg19</option> + <option value="BSgenome.Hsapiens.UCSC.hg38" selected="true">BSgenome.Hsapiens.UCSC.hg38</option> + <!--<option value="BSgenome.Mmusculus.UCSC.mm10">BSgenome.Mmusculus.UCSC.mm10</option> + <option value="BSgenome.Mmusculus.UCSC.mm9">BSgenome.Mmusculus.UCSC.mm9</option>--> + </param> + <param name="levels" type="data" format="tabular" + label="A two-column tab-separated file describing levels attributed to each sample name" + help="Tip: the sample name list in the vcf collection can be obtained using + the IUC Galaxy tool 'Extract element identifiers of a list collection' <br> + example:<br> + sample1 female<br> + sample2 female<br> + sample3 male<br> + sample4 female<br> + sample5 male<br> + sample5 male" /> + <param name="signum" type="integer" value="2" min="2" max="30" + label="selects the N most significant signatures in samples to express mutational patterns" + help="an integer between 2 and 30 signature types from cosmic"/> + + </inputs> + <outputs> + <data name="output" format="pdf" label="Mutational Patterns/Signatures" /> + </outputs> + <tests> + <test> + <param name="vcfs"> + <collection type="list"> + <element name="1" value="EGF167.vcf"/> + <element name="2" value="EGF089.vcf"/> + <element name="3" value="EGF037F.vcf"/> + </collection> + </param> + <param name="genome" value="BSgenome.Hsapiens.UCSC.hg38"/> + <param name="levels" value="levels.tab" ftype="tabular"/> + <param name="signum" value="3" /> + <output name="output" file="output.pdf" compare="sim_size" ftype="pdf"/> + </test> + </tests> + <help> + +**What it does** + +Takes as inputs + +* a collection of n vcf files corresponding to n samples. +* a tabular table describing the correspondance of sample names to levels (tissues, ages, sexes, etc.) +* the number of cosmic signatures to decompose mutational patterns of samples + + +This tool returns a pdf file with the visualisation : + +* the Cosine similarity of samples when decomposed over the 30 signatures of cosmic +* the absolute contribution of the n most contributing cosmic signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* the relative contribution of the n most contributing cosmic signatures in the samples mutational patterns (to be set by the user, between 2 and 30) +* a clustering of the samples with respect to the relative contribution of their cosmic signatures +* pie charts of the samples displaying for each sample the relative contribution of the n most contributing cosmic signatures in their mutational pattern + + + </help> + <citations> + <citation type="doi">10.18129/B9.bioc.MutationalPatterns</citation> + <citation type="doi">10.1186/s13073-018-0539-0</citation> + <citation type="doi">10.1038/nature12477</citation> + </citations> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/EGF037F.vcf Sun Sep 13 18:40:29 2020 +0000 @@ -0,0 +1,4331 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 184576 . G A 0 PASS DP=93;GPV=1;SPV=0.019075;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:6,3:30,6 +chr1 269371 . A G 0 PASS DP=109;GPV=1;SPV=0.01875;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:21,3:19,5 +chr1 283183 . C G 0 PASS DP=118;GPV=1;SPV=0.0053658;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:21,8:22,2 +chr1 738332 . C T 0 PASS DP=104;GPV=1;SPV=0.043011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:33,8:3,1 +chr1 738586 . G A 0 PASS DP=161;GPV=1;SPV=9.9539e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:25,5:32,8 +chr1 738733 . T C 0 PASS DP=123;GPV=1;SPV=0.016466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:20,5:25,3 +chr1 1028545 . A G 0 PASS DP=32;GPV=1;SPV=0.043159;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,2:5,1 +chr1 1573439 . A G 0 PASS DP=31;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,1:0,1 +chr1 2071063 . C T 0 PASS DP=72;GPV=1;SPV=0.011351;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,1:4,5 +chr1 2342857 . AT A 0 PASS DP=55;GPV=1;SPV=0.044297;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:6,2:12,3 +chr1 2671870 . C A 0 PASS DP=196;GPV=1;SPV=0.00012417;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,3:5,2 +chr1 2672087 . G A 0 PASS DP=97;GPV=1;SPV=0.0012127;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,2:8,3 +chr1 3927491 . G A 0 PASS DP=42;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,6:4,3:4,3 +chr1 4079275 . G A 0 PASS DP=67;GPV=1;SPV=1.6102e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,9:8,6 +chr1 4173876 . G A 0 PASS DP=53;GPV=1;SPV=0.0022746;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:11,8:10,2 +chr1 4318436 . T TA 0 PASS DP=34;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:8,1:6,3 +chr1 4530714 . A C 0 PASS DP=55;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:5,2:2,1:3,1 +chr1 5796213 . C A 0 PASS DP=42;GPV=1;SPV=0.084408;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:8,2:8,1 +chr1 6641377 . CAA C 0 PASS DP=36;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,7:7,6:7,1 +chr1 6926438 . C CTCTTTCTT 0 PASS DP=49;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,7:1,1:11,6 +chr1 7913728 . GTT G 0 PASS DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,1:5,3 +chr1 8574368 . G A 0 PASS DP=25;GPV=1;SPV=0.017149;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:1,1:5,7 +chr1 8852528 . AAAAGAAAG A 0 PASS DP=37;GPV=1;SPV=0.0087276;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,5:7,4 +chr1 11854533 . G A 0 PASS DP=29;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:1,1:3,1 +chr1 12897156 . G A 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr1 12939075 . A G 0 PASS DP=41;GPV=1;SPV=0.026469;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:5,1:9,6 +chr1 13046693 . C A 0 PASS DP=35;GPV=1;SPV=0.021584;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,1:5,3 +chr1 13150128 . C G 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2 +chr1 13155510 . C T 0 PASS DP=36;GPV=1;SPV=0.013014;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:3,2:7,5 +chr1 13369851 . G A 0 PASS DP=72;GPV=1;SPV=0.018596;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:18,4:9,3 +chr1 16164067 . A T 0 PASS DP=50;GPV=1;SPV=0.020191;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,10:8,5:8,5 +chr1 16536071 . G A 0 PASS DP=384;GPV=1;SPV=0.044443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:148,19:78,12:70,7 +chr1 16550749 . C A 0 PASS DP=78;GPV=1;SPV=0.044689;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:22,6:15,6 +chr1 16560810 . C T 0 PASS DP=253;GPV=1;SPV=0.048505;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:96,16:48,9:48,7 +chr1 16564382 . G C 0 PASS DP=354;GPV=1;SPV=0.030816;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:140,16:104,6:36,10 +chr1 16571744 . C T 0 PASS DP=211;GPV=1;SPV=0.018301;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:86,17:47,8:39,9 +chr1 16571771 . G A 0 PASS DP=217;GPV=1;SPV=0.045999;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:92,17:45,9:47,8 +chr1 16576444 . G C 0 PASS DP=201;GPV=1;SPV=0.031308;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:80,15:31,3:49,12 +chr1 16577822 . T C 0 PASS DP=176;GPV=1;SPV=0.025445;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:24,5:36,9 +chr1 16599312 . C T 0 PASS DP=217;GPV=1;SPV=0.037127;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:50,5:37,11 +chr1 16601408 . T C 0 PASS DP=213;GPV=1;SPV=0.042617;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:79,18:31,4:48,14 +chr1 16603496 . C T 0 PASS DP=208;GPV=1;SPV=0.037802;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:85,15:47,8:38,7 +chr1 16618314 . G C 0 PASS DP=198;GPV=1;SPV=0.014024;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:86,16:38,6:48,10 +chr1 16624325 . G A 0 PASS DP=354;GPV=1;SPV=0.023677;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:126,26:59,14:67,12 +chr1 16628633 . A G 0 PASS DP=246;GPV=1;SPV=0.042221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:95,20:51,10:44,10 +chr1 16656288 . G C 0 PASS DP=185;GPV=1;SPV=0.007124;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:64,19:31,13:33,6 +chr1 16674958 . A G 0 PASS DP=164;GPV=1;SPV=0.014272;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:71,10:39,9:32,1 +chr1 16708815 . C G 0 PASS DP=86;GPV=1;SPV=0.0043049;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:12,11:17,5 +chr1 16733054 . C T 0 PASS DP=269;GPV=1;SPV=0.039538;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:108,18:44,8:64,10 +chr1 16756749 . A G 0 PASS DP=201;GPV=1;SPV=0.045414;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:89,15:43,9:46,6 +chr1 16795485 . T C 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:7,2:0,5 +chr1 17257031 . CA C 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,5:0,1 +chr1 18014818 . A T 0 PASS DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:19,2:9,4 +chr1 19019158 . A T 0 PASS DP=68;GPV=1;SPV=1.2113e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,19:5,11:11,8 +chr1 19410476 . G A 0 PASS DP=56;GPV=1;SPV=6.5658e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,3:7,6 +chr1 19611469 . A ATTT 0 PASS DP=37;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,4:7,3:4,1 +chr1 22555088 . G A 0 PASS DP=43;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:2,1:5,1 +chr1 22992252 . CA C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr1 23826355 . TTGG T 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2 +chr1 23881611 . C T 0 PASS DP=45;GPV=1;SPV=0.00061448;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,3:3,3 +chr1 23979057 . G GT 0 PASS DP=32;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:3,8:4,1 +chr1 24049441 . T A 0 PASS DP=25;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:3,1:4,1 +chr1 24196805 . T G 0 PASS DP=18;GPV=1;SPV=0.00761;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:1,3:1,4 +chr1 25464338 . CTT C 0 PASS DP=22;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:1,3:4,1 +chr1 27454650 . T A 0 PASS DP=64;GPV=1;SPV=0.00011345;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,4:5,5 +chr1 28262621 . C CAAAAAAAA 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr1 28540810 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.0055741;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,6:3,1 +chr1 30054513 . A G 0 PASS DP=51;GPV=1;SPV=0.043924;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,4:8,2 +chr1 30480962 . ATGTGTGTG A 0 PASS DP=31;GPV=1;SPV=0.0059154;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:4,5:0,1 +chr1 31255828 . C CA 0 PASS DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,1:10,3 +chr1 36962640 . A AAG 0 PASS DP=37;GPV=1;SPV=0.00074257;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,5:3,4 +chr1 37702951 . C CA 0 PASS DP=38;GPV=1;SPV=0.022117;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,5:8,3 +chr1 40922013 . G GT 0 PASS DP=81;GPV=1;SPV=1.223e-06;SS=2;SSC=59;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,6:8,6 +chr1 40998789 . T C 0 PASS DP=58;GPV=1;SPV=3.2959e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,3:9,10 +chr1 42355597 . A AAAAAAAAT 0 PASS DP=35;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,7:2,2:5,5 +chr1 42819170 . C CGT 0 PASS DP=41;GPV=1;SPV=0.026067;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,3:2,2 +chr1 42922001 . A C 0 PASS DP=45;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,2:4,1:3,1 +chr1 43117234 . G C 0 PASS DP=60;GPV=1;SPV=0.030658;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:7,3:15,1 +chr1 43461485 . C CTCTCTTTCTCTT 0 PASS DP=38;GPV=1;SPV=0.0077055;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,4:5,2 +chr1 43817407 . T C 0 PASS DP=33;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:0,1:6,1 +chr1 45774703 . G A 0 PASS DP=28;GPV=1;SPV=0.017094;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1 +chr1 47097820 . A AT 0 PASS DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1 +chr1 48980718 . AATATATATATATATATATATATATATATATAT A 0 PASS DP=19;GPV=1;SPV=0.0077399;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,2:1,4 +chr1 49370145 . TTA T 0 PASS DP=54;GPV=1;SPV=0.0080525;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,5:10,4 +chr1 49972516 . G A 0 PASS DP=65;GPV=1;SPV=1.9869e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:11,10:10,6 +chr1 50729058 . A T 0 PASS DP=32;GPV=1;SPV=0.04741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:8,2:5,6 +chr1 51081004 . G C 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1 +chr1 52093630 . C CA 0 PASS DP=33;GPV=1;SPV=0.035721;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1 +chr1 52266405 . TAAA T 0 PASS DP=30;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:2,2:1,3 +chr1 52964214 . C CT 0 PASS DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,5:8,3 +chr1 55273567 . G A 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,2:5,2 +chr1 56723946 . G A 0 PASS DP=69;GPV=1;SPV=0.00051333;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,3:8,5 +chr1 57768175 . T TAA 0 PASS DP=21;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,5:1,4:0,1 +chr1 68047321 . C T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,6:9,2 +chr1 68213451 . CA C 0 PASS DP=36;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:12,3:5,2 +chr1 68982123 . C T 0 PASS DP=53;GPV=1;SPV=6.6326e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,2:6,7 +chr1 70297287 . A G 0 PASS DP=16;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr1 70647900 . TAC T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2 +chr1 70981312 . CTTCCTTTCTTCTTTCTTTCTTTCTTTCTTTCTTTCT C 0 PASS DP=30;GPV=1;SPV=0.17679;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:2,2:14,2 +chr1 71155378 . C A 0 PASS DP=69;GPV=1;SPV=0.00022877;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:11,6:13,5 +chr1 75302112 . G GTT 0 PASS DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:6,3:0,1 +chr1 76669544 . T TTTTTTTTA 0 PASS DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,6:7,4 +chr1 77304407 . TTTC T 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr1 78238004 . C A 0 PASS DP=22;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1 +chr1 78690904 . C CT 0 PASS DP=26;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,10:1,6:2,4 +chr1 79201821 . A AGGAGGAGGAGGAGGAGGAGGG 0 PASS DP=31;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:4,3:6,1 +chr1 79959408 . C T 0 PASS DP=72;GPV=1;SPV=4.6582e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:10,7:10,7 +chr1 83303544 . C CAAA 0 PASS DP=18;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,6:0,3:1,3 +chr1 83359203 . G T 0 PASS DP=16;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:1,2:2,1 +chr1 84311332 . T TAA 0 PASS DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:6,5:4,1 +chr1 85296311 . C CT 0 PASS DP=20;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,3:1,3 +chr1 85536978 . TATATATAC T 0 PASS DP=36;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,2:5,4 +chr1 86200361 . C CAAAAA 0 PASS DP=19;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,4:0,0 +chr1 88097222 . G A 0 PASS DP=50;GPV=1;SPV=0.0007761;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:3,2:10,5 +chr1 89653369 . A G 0 PASS DP=70;GPV=1;SPV=2.4236e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:13,6:3,10 +chr1 90406935 . A T 0 PASS DP=50;GPV=1;SPV=0.065063;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,6:12,3 +chr1 91144703 . G A 0 PASS DP=67;GPV=1;SPV=5.0341e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:7,9:7,9 +chr1 91364001 . T TATGGAGGGGAACACATTGGGAC 0 PASS DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr1 92507111 . G A 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chr1 92814250 . A ATT 0 PASS DP=32;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:8,4:5,3 +chr1 93998713 . A ATTTAT 0 PASS DP=53;GPV=1;SPV=0.019226;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,7:8,2 +chr1 94295709 . A ATC 0 PASS DP=31;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:7,3:5,1 +chr1 95074345 . TC T 0 PASS DP=39;GPV=1;SPV=0.016596;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,3:9,1 +chr1 96005255 . T A 0 PASS DP=31;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,3:4,2:1,1 +chr1 96140608 . CT C 0 PASS DP=18;GPV=1;SPV=0.040043;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:1,4:0,1 +chr1 97362616 . C T 0 PASS DP=67;GPV=1;SPV=0.0003089;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:12,5:13,7 +chr1 97904795 . G GTAT 0 PASS DP=50;GPV=1;SPV=0.00019093;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,5:6,5 +chr1 98348089 . CT C 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,3:3,2 +chr1 100159600 . C T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr1 100358293 . C T 0 PASS DP=65;GPV=1;SPV=6.1031e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,4:8,7 +chr1 102966708 . C G 0 PASS DP=51;GPV=1;SPV=0.031813;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:4,2:6,2 +chr1 104873363 . GGAAAA G 0 PASS DP=28;GPV=1;SPV=0.0081269;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:2,4:2,1 +chr1 105426794 . G A 0 PASS DP=62;GPV=1;SPV=0.049127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,3:11,1 +chr1 105746932 . T G 0 PASS DP=54;GPV=1;SPV=0.00065827;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:12,7:8,5 +chr1 106712000 . A T 0 PASS DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,2:6,3 +chr1 106812711 . A G 0 PASS DP=37;GPV=1;SPV=0.00076161;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,6:4,5 +chr1 107049529 . GGTT G 0 PASS DP=26;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:1,3:7,2 +chr1 108523875 . TATATATATG T 0 PASS DP=29;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,1:6,3 +chr1 108771460 . AATAT A 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr1 108772352 . A ATATC 0 PASS DP=31;GPV=1;SPV=0.015732;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr1 108954010 . C CA 0 PASS DP=34;GPV=1;SPV=0.014656;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:7,6:6,2 +chr1 109852477 . G A 0 PASS DP=56;GPV=1;SPV=0.00073537;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,5:8,2 +chr1 111062544 . T A 0 PASS DP=48;GPV=1;SPV=5.5082e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,4:4,5 +chr1 111227411 . G T 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1 +chr1 111615829 . CA C 0 PASS DP=38;GPV=1;SPV=0.010926;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,4:4,3 +chr1 111908435 . C T 0 PASS DP=63;GPV=1;SPV=3.1845e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:10,10:7,6 +chr1 112474079 . A G 0 PASS DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:2,3:5,8 +chr1 112484222 . T TATATATACAC 0 PASS DP=39;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,5:7,2:2,3 +chr1 113509914 . C T 0 PASS DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:12,8:4,1 +chr1 113584966 . C CAATTT 0 PASS DP=27;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,2:8,2 +chr1 114205271 . ATATATGTGAT A 0 PASS DP=36;GPV=1;SPV=0.15966;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:5,2:12,1 +chr1 115791931 . T A 0 PASS DP=57;GPV=1;SPV=0.00012315;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:4,2:9,6 +chr1 115792300 . GTAGTA G 0 PASS DP=42;GPV=1;SPV=0.020719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:4,1:4,5 +chr1 116770414 . G GGAGAGAGA 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,4:6,1 +chr1 117127034 . T TC 0 PASS DP=47;GPV=1;SPV=0.022163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:1,1:10,6 +chr1 118576067 . C G 0 PASS DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,1:3,5 +chr1 119265512 . CA C 0 PASS DP=35;GPV=1;SPV=0.011129;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr1 119500265 . C T 0 PASS DP=32;GPV=1;SPV=0.011012;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,6:4,1 +chr1 120187664 . G A 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,3:6,4 +chr1 120456434 . A G 0 PASS DP=49;GPV=1;SPV=0.0039871;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:8,3:6,9 +chr1 120458978 . C G 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr1 120999034 . T G 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,1:6,3 +chr1 121016463 . C T 0 PASS DP=62;GPV=1;SPV=0.036704;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,1:16,3 +chr1 121049803 . T C 0 PASS DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,1:14,4 +chr1 121447300 . A T 0 PASS DP=51;GPV=1;SPV=1.0919e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:7,8:5,5 +chr1 121741553 . G C 0 PASS DP=26;GPV=1;SPV=0.028284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,2:3,5 +chr1 122138830 . T C 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr1 122284147 . C T 0 PASS DP=89;GPV=1;SPV=0.001014;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,2:17,11 +chr1 122333339 . G C 0 PASS DP=77;GPV=1;SPV=0.03926;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:19,6:11,2 +chr1 122382656 . C G 0 PASS DP=239;GPV=1;SPV=0.03683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:109,20:37,2:72,18 +chr1 122404413 . G T 0 PASS DP=124;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:47,5:4,1 +chr1 123755350 . T C 0 PASS DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chr1 124819577 . A T 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,2:6,4 +chr1 124862955 . G A 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,1:4,4 +chr1 124924067 . C T 0 PASS DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:5,2:2,1 +chr1 124935455 . G C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr1 125141871 . TTTC T 0 PASS DP=92;GPV=1;SPV=0.018195;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:15,4:17,8 +chr1 143194701 . C T 0 PASS DP=198;GPV=1;SPV=0.042501;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:85,13:31,11:54,2 +chr1 143234677 . G A 0 PASS DP=168;GPV=1;SPV=0.0080857;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:7,2:67,7 +chr1 143262456 . G A 0 PASS DP=5138;GPV=1;SPV=0.049301;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2584:2270,265:755,71:1515,194 +chr1 143393078 . T C 0 PASS DP=29;GPV=1;SPV=0.013894;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr1 144031996 . GTT G 0 PASS DP=36;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,3:11,3 +chr1 144500177 . C T 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr1 144569911 . CTGTGTG C 0 PASS DP=38;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:2,2:1,4 +chr1 144772388 . C A 0 PASS DP=59;GPV=1;SPV=0.020233;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:4,4:12,4 +chr1 145129856 . G C 0 PASS DP=65;GPV=1;SPV=2.728e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,5:9,10 +chr1 145259810 . C CAACATCA 0 PASS DP=62;GPV=1;SPV=0.018191;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,2:8,4 +chr1 145986946 . C CA 0 PASS DP=27;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:4,15:2,13:2,2 +chr1 146136588 . C A 0 PASS DP=36;GPV=1;SPV=0.089257;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4 +chr1 146740554 . G A 0 PASS DP=37;GPV=1;SPV=0.0052707;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,2:5,6 +chr1 147608330 . C CTTTT 0 PASS DP=25;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1 +chr1 148560207 . C G 0 PASS DP=126;GPV=1;SPV=0.023176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:37,6:21,2 +chr1 148838480 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 149080154 . C G 0 PASS DP=125;GPV=1;SPV=0.045884;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,10:22,1:32,9 +chr1 150453034 . CT C 0 PASS DP=42;GPV=1;SPV=0.010243;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:9,6:4,2 +chr1 152234092 . T G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3 +chr1 152234093 . A T 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,1:7,3 +chr1 152234095 . AGT A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr1 153917795 . G T 0 PASS DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,3:9,3 +chr1 154024688 . A AT 0 PASS DP=25;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,8:0,3:2,5 +chr1 154032950 . GAAGAAAAGAA G 0 PASS DP=19;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:1,4:1,3 +chr1 155348913 . C T 0 PASS DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,3:2,2:2,1 +chr1 155422303 . A AT 0 PASS DP=35;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4 +chr1 156930100 . T TC 0 PASS DP=27;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:2,7:4,2 +chr1 157349714 . CT C 0 PASS DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:0,1:8,4 +chr1 157618389 . T C 0 PASS DP=55;GPV=1;SPV=0.0044113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:9,4:14,5 +chr1 157712211 . C CT 0 PASS DP=27;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:4,5:2,1 +chr1 159075613 . G T 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,3:8,1 +chr1 160735894 . A T 0 PASS DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:3,5:5,5 +chr1 160918153 . AT A 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,2:13,3 +chr1 161064827 . GAAAGAGAA G 0 PASS DP=36;GPV=1;SPV=0.048962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:9,2:2,3 +chr1 161423322 . TG T 0 PASS DP=31;GPV=1;SPV=0.13793;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:6,2:7,1 +chr1 161569065 . G A 0 PASS DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3 +chr1 161600163 . T C 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,3:2,3 +chr1 161658875 . T A 0 PASS DP=89;GPV=1;SPV=0.038053;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:19,8:14,1 +chr1 164065177 . C T 0 PASS DP=64;GPV=1;SPV=0.049522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,1:15,3 +chr1 165581230 . A ACACATG 0 PASS DP=59;GPV=1;SPV=0.013457;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:17,7:8,5 +chr1 167200851 . CA C 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,2:2,2 +chr1 168110527 . A C 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,3:2,1 +chr1 168110531 . AG A 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr1 168933831 . C CTT 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr1 169075433 . A AATATATATATATATATATAT 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr1 169342576 . GTA G 0 PASS DP=33;GPV=1;SPV=0.034205;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr1 170854867 . A G 0 PASS DP=56;GPV=1;SPV=5.5032e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:9,7:4,6 +chr1 171100237 . G C 0 PASS DP=50;GPV=1;SPV=0.0001432;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,10:8,2 +chr1 171577770 . C CATA 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:7,6:0,2 +chr1 173340323 . TAC T 0 PASS DP=48;GPV=1;SPV=0.0070433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,10:4,8:1,2 +chr1 173834744 . T TC 0 PASS DP=22;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,2:1,3 +chr1 174069508 . A AT 0 PASS DP=33;GPV=1;SPV=0.0099416;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1 +chr1 174349588 . AC A 0 PASS DP=38;GPV=1;SPV=0.13514;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:11,2:6,1 +chr1 174634305 . A C 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,5:12,4 +chr1 175547605 . G C 0 PASS DP=42;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:9,3:4,1 +chr1 176122139 . C CA 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,5:3,2 +chr1 177110790 . A T 0 PASS DP=66;GPV=1;SPV=7.8832e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,8:12,3 +chr1 177402840 . G A 0 PASS DP=53;GPV=1;SPV=0.13137;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,1:14,4 +chr1 178006272 . A T 0 PASS DP=53;GPV=1;SPV=0.08111;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,2:8,2 +chr1 178076750 . C CT 0 PASS DP=39;GPV=1;SPV=0.011728;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,7:6,3 +chr1 178574225 . C CTGTG 0 PASS DP=56;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr1 178695883 . T C 0 PASS DP=36;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,4:10,1:7,3 +chr1 178975705 . A G 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr1 179335015 . CA C 0 PASS DP=28;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,6:4,5:0,1 +chr1 179462679 . T C 0 PASS DP=56;GPV=1;SPV=3.5908e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,6:10,7 +chr1 180350023 . C T 0 PASS DP=27;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,3:3,1:0,2 +chr1 180613394 . GT G 0 PASS DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,4:7,6 +chr1 183773015 . CAAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,4:2,2 +chr1 184275120 . G A 0 PASS DP=46;GPV=1;SPV=0.010777;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,2:6,4 +chr1 187288570 . T C 0 PASS DP=70;GPV=1;SPV=2.5724e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,6:10,9 +chr1 188474530 . C CA 0 PASS DP=36;GPV=1;SPV=0.0074494;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:6,5:5,2 +chr1 188886337 . CTCTT C 0 PASS DP=50;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,8:4,2:8,6 +chr1 189686809 . A G 0 PASS DP=42;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,4:9,1:6,3 +chr1 191617509 . A C 0 PASS DP=50;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,3:14,1 +chr1 194698876 . G A 0 PASS DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3 +chr1 194895616 . G T 0 PASS DP=57;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,4:3,2:3,2 +chr1 195451267 . T C 0 PASS DP=57;GPV=1;SPV=0.019281;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1 +chr1 195742125 . G A 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2 +chr1 196759540 . C T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,3:9,1 +chr1 197793654 . AAG A 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr1 198440146 . C T 0 PASS DP=43;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,5:7,1:6,4 +chr1 201800444 . T TA 0 PASS DP=70;GPV=1;SPV=1.0913e-06;SS=2;SSC=59;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:10,8:9,9 +chr1 204146286 . A AAGCTC 0 PASS DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,2:8,5 +chr1 205193870 . C CA 0 PASS DP=36;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:12,4:4,1 +chr1 207796693 . T C 0 PASS DP=39;GPV=1;SPV=0.034056;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,7:4,2:2,5 +chr1 208200577 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,4:2,2 +chr1 210799575 . C A 0 PASS DP=57;GPV=1;SPV=0.0027818;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:7,3:10,3 +chr1 211196099 . C CAAAA 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,4:6,2 +chr1 211496361 . C CT 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr1 211622573 . CT C 0 PASS DP=51;GPV=1;SPV=0.022724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:6,2:3,2 +chr1 212248907 . GA G 0 PASS DP=29;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,9:3,1 +chr1 215463441 . G A 0 PASS DP=52;GPV=1;SPV=1.1679e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:2,2:8,8 +chr1 216245470 . T TGAGAGAGA 0 PASS DP=28;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:5,2:1,4 +chr1 217141024 . G A 0 PASS DP=59;GPV=1;SPV=0.064844;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,3:13,2 +chr1 218798280 . CT C 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,4:2,3 +chr1 219409446 . A T 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,3:8,2 +chr1 219589948 . G T 0 PASS DP=69;GPV=1;SPV=0.0049862;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,4:12,3 +chr1 222488807 . G A 0 PASS DP=98;GPV=1;SPV=0.044218;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:21,6:17,3 +chr1 222595802 . T C 0 PASS DP=42;GPV=1;SPV=0.0036482;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,9:3,1:3,8 +chr1 223050053 . CTT C 0 PASS DP=29;GPV=1;SPV=0.00072464;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:4,7:2,2 +chr1 223439757 . T C 0 PASS DP=33;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:3,3:6,2 +chr1 224102822 . A G 0 PASS DP=43;GPV=1;SPV=0.024795;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chr1 227315955 . C CAAAAA 0 PASS DP=32;GPV=1;SPV=0.016809;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:9,5:2,1 +chr1 230038404 . A AAAGAAAG 0 PASS DP=51;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:13,1:11,3 +chr1 230156233 . A AAG 0 PASS DP=29;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,3:3,2 +chr1 232271499 . A ATCTCTCTCTCTCTC 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,1:8,3 +chr1 232759266 . CTT C 0 PASS DP=43;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,7:6,2:4,5 +chr1 234780250 . T C 0 PASS DP=190;GPV=1;SPV=0.0024028;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:70,20:39,8:31,12 +chr1 235217432 . A G 0 PASS DP=51;GPV=1;SPV=0.025971;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,4:9,3 +chr1 235217437 . C CATATACATACATACACTCACAT 0 PASS DP=50;GPV=1;SPV=0.0022188;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,7:3,5:6,2 +chr1 235220795 . T G 0 PASS DP=61;GPV=1;SPV=0.0015078;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:8,3:11,4 +chr1 235924960 . CACACACAT C 0 PASS DP=22;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,2:1,2 +chr1 236390941 . G GTTATTATTATTATTATTA 0 PASS DP=26;GPV=1;SPV=0.004257;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,9:3,5:1,4 +chr1 238891518 . C T 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:8,2:16,3 +chr1 239249557 . T TTTTATTTATTTATTTATTTA 0 PASS DP=29;GPV=1;SPV=0.002122;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2 +chr1 239933754 . GAAAGAAAGAAAGAA G 0 PASS DP=27;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:6,5:0,1 +chr1 240479086 . TA T 0 PASS DP=27;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,6:2,5:1,1 +chr1 240812437 . C CTT 0 PASS DP=38;GPV=1;SPV=0.016795;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:7,6:4,1 +chr1 241235918 . G A 0 PASS DP=46;GPV=1;SPV=0.071698;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,2:10,3 +chr1 241705558 . TA T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chr1 241960337 . A AT 0 PASS DP=53;GPV=1;SPV=0.024029;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,6:10,4 +chr1 243854312 . GTTTT G 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,1:6,4 +chr1 243972195 . T TC 0 PASS DP=35;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:2,4:5,2 +chr1 245103006 . A G 0 PASS DP=58;GPV=1;SPV=0.016411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,1:7,7 +chr1 245192248 . G A 0 PASS DP=47;GPV=1;SPV=0.0025268;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,4:6,2 +chr1 245299320 . GTT G 0 PASS DP=30;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:8,2:2,2 +chr1 246535521 . A ATTTTCTTTTTTTTTTTC 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2 +chr1 246619881 . ACT A 0 PASS DP=42;GPV=1;SPV=0.07108;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:4,1:11,2 +chr1 247837462 . AAAAAG A 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,4:9,3 +chr1 248354980 . GAATT G 0 PASS DP=47;GPV=1;SPV=0.010107;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,3:8,2 +chr10 862256 . T TAA 0 PASS DP=21;GPV=1;SPV=0.0090299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,2:1,2 +chr10 940012 . AT A 0 PASS DP=40;GPV=1;SPV=0.013021;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3 +chr10 1010151 . C T 0 PASS DP=58;GPV=1;SPV=0.041156;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:10,1:14,6 +chr10 1015706 . T C 0 PASS DP=26;GPV=1;SPV=0.032107;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,3:2,2 +chr10 1015709 . A G 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2 +chr10 1015710 . C G 0 PASS DP=25;GPV=1;SPV=0.03913;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,3:1,2 +chr10 1992884 . C T 0 PASS DP=54;GPV=1;SPV=8.0714e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,8:7,3 +chr10 2029107 . A T 0 PASS DP=46;GPV=1;SPV=0.015873;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,4:8,4 +chr10 2350964 . G A 0 PASS DP=59;GPV=1;SPV=0.038561;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,3:12,1 +chr10 2510784 . C T 0 PASS DP=45;GPV=1;SPV=0.032518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr10 2511571 . G A 0 PASS DP=43;GPV=1;SPV=0.012445;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,4:6,6 +chr10 2511572 . T TA 0 PASS DP=42;GPV=1;SPV=0.00534;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,10:6,4:6,6 +chr10 2536476 . T C 0 PASS DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,2:9,2 +chr10 2561419 . C T 0 PASS DP=68;GPV=1;SPV=3.7015e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:9,8:5,10 +chr10 3252001 . T A 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr10 3457411 . C T 0 PASS DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,1:2,5 +chr10 3771027 . TTC T 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:10,3:4,7 +chr10 4209012 . C CAGAGAG 0 PASS DP=30;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:2,5:2,1 +chr10 4665375 . C CAA 0 PASS DP=39;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,13:3,11:1,2 +chr10 4738997 . AT A 0 PASS DP=41;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:2,2:1,1:1,1 +chr10 5304010 . C A 0 PASS DP=61;GPV=1;SPV=0.078413;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chr10 6093178 . T C 0 PASS DP=49;GPV=1;SPV=0.016464;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:6,3:14,3 +chr10 8332995 . CCTCTT C 0 PASS DP=25;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3 +chr10 11497411 . C CA 0 PASS DP=40;GPV=1;SPV=0.01463;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:7,6:4,2 +chr10 11711365 . AAAATAAATAAAT A 0 PASS DP=33;GPV=1;SPV=0.010062;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,3:4,4 +chr10 12281275 . T TA 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,2:9,2 +chr10 14008162 . C CTGTGTGTGTGTG 0 PASS DP=29;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:3,3:2,1 +chr10 15329629 . A T 0 PASS DP=48;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:0,1:1,1 +chr10 16546145 . G C 0 PASS DP=59;GPV=1;SPV=5.4215e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:6,7:8,12 +chr10 17223725 . G A 0 PASS DP=66;GPV=1;SPV=3.5134e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:4,4:11,12 +chr10 17628955 . C T 0 PASS DP=50;GPV=1;SPV=0.0063217;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,1:7,8 +chr10 18634768 . CA C 0 PASS DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,1:7,5 +chr10 19088536 . CT C 0 PASS DP=33;GPV=1;SPV=0.0019118;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,5:4,2 +chr10 19237572 . ATATAATTATAATTATATAATTATATAAT A 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr10 19292894 . A C 0 PASS DP=30;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,3:3,1:3,2 +chr10 19447041 . AACACACACACACACACACACATACACAGACAC A 0 PASS DP=30;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,4:6,2 +chr10 20072481 . CAAAG C 0 PASS DP=33;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,7:2,1 +chr10 21316823 . A AT 0 PASS DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:8,6:9,2 +chr10 21968504 . C CT 0 PASS DP=41;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,5:8,3 +chr10 22716451 . A C 0 PASS DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:12,3:6,4 +chr10 23212778 . T TGA 0 PASS DP=37;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,9:3,7:4,2 +chr10 24449324 . AT A 0 PASS DP=62;GPV=1;SPV=0.042266;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,3:7,2 +chr10 24924710 . G GA 0 PASS DP=46;GPV=1;SPV=0.023752;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr10 25303385 . C A 0 PASS DP=52;GPV=1;SPV=0.0088503;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3 +chr10 27685443 . ATTTT A 0 PASS DP=31;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,5:4,1 +chr10 27923993 . A AGG 0 PASS DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,6:6,2 +chr10 28325998 . T G 0 PASS DP=30;GPV=1;SPV=0.0046299;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:0,2:7,9 +chr10 28325999 . C A 0 PASS DP=31;GPV=1;SPV=0.0033618;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:1,4:6,9 +chr10 28902067 . ATATT A 0 PASS DP=55;GPV=1;SPV=0.01858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,5:10,6 +chr10 29268495 . C T 0 PASS DP=59;GPV=1;SPV=0.0098662;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:17,3:8,4 +chr10 29902732 . T TTATATA 0 PASS DP=20;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,2:2,3 +chr10 31562426 . C T 0 PASS DP=48;GPV=1;SPV=0.0041401;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,3:9,5 +chr10 32828458 . AGAAGAAGAG A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr10 33077355 . G A 0 PASS DP=28;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,3:3,2:2,1 +chr10 34383705 . T G 0 PASS DP=41;GPV=1;SPV=0.082759;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:4,1:3,1 +chr10 34573738 . C A 0 PASS DP=34;GPV=1;SPV=0.012097;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,1:5,3 +chr10 35587354 . GTCTCTCTCTCTCTCTCTC G 0 PASS DP=34;GPV=1;SPV=0.0056638;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:5,6:4,2 +chr10 35652253 . CCCTT C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4 +chr10 37030816 . ATTTTTTTTTTTTTT A 0 PASS DP=21;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr10 37641011 . G T 0 PASS DP=52;GPV=1;SPV=5.8393e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,6:5,5 +chr10 38129304 . T TAAAA 0 PASS DP=42;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:8,9:5,2 +chr10 38177616 . C CTT 0 PASS DP=28;GPV=1;SPV=0.00028986;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,4:2,5 +chr10 38270480 . C CAA 0 PASS DP=51;GPV=1;SPV=0.034379;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:4,3:14,3 +chr10 38460833 . GT G 0 PASS DP=75;GPV=1;SPV=0.031786;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,6:16,2 +chr10 38528482 . T A 0 PASS DP=197;GPV=1;SPV=0.02621;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:57,8:23,4:34,4 +chr10 38636396 . T C 0 PASS DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:18,3:18,1 +chr10 38661131 . T C 0 PASS DP=99;GPV=1;SPV=0.019409;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:29,10:11,5 +chr10 38679100 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,10:3,8:4,2 +chr10 38869089 . G T 0 PASS DP=47;GPV=1;SPV=0.037959;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,4:7,3:4,1 +chr10 38969052 . A ATAATT 0 PASS DP=76;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,5:13,2:21,3 +chr10 39276187 . G T 0 PASS DP=57;GPV=1;SPV=0.0013091;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:7,4:10,3 +chr10 41311337 . G A 0 PASS DP=66;GPV=1;SPV=0.015183;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:10,2:14,8 +chr10 41498724 . A G 0 PASS DP=205;GPV=1;SPV=0.0055633;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:71,10:60,8:11,2 +chr10 41498775 . G T 0 PASS DP=263;GPV=1;SPV=0.01217;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:106,12:77,7:29,5 +chr10 41584224 . A T 0 PASS DP=477;GPV=1;SPV=0.0064468;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:229:199,30:145,22:54,8 +chr10 41588208 . G A 0 PASS DP=58;GPV=1;SPV=0.026691;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,2:8,4 +chr10 41589576 . C T 0 PASS DP=128;GPV=1;SPV=0.041092;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:4,4:46,3 +chr10 41883926 . G C 0 PASS DP=77;GPV=1;SPV=0.006408;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,1:7,7 +chr10 41904677 . TTGGAA T 0 PASS DP=163;GPV=1;SPV=0.004862;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:25,5:32,11 +chr10 41913976 . C A 0 PASS DP=222;GPV=1;SPV=0.02271;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:33,14:53,4 +chr10 42070560 . C T 0 PASS DP=7830;GPV=1;SPV=0.025336;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:3811:3377,416:3054,375:323,41 +chr10 42130201 . C G 0 PASS DP=467;GPV=1;SPV=0.01108;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:208,25:74,8:134,17 +chr10 42157887 . G A 0 PASS DP=117;GPV=1;SPV=0.043444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,11:32,7:18,4 +chr10 42157986 . CAT C 0 PASS DP=209;GPV=1;SPV=0.048686;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:91,16:57,12:34,4 +chr10 42315581 . C T 0 PASS DP=41;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,3:0,1:0,2 +chr10 42772046 . GGC G 0 PASS DP=38;GPV=1;SPV=1.4316e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:7,9:0,4 +chr10 42968800 . TCAAAGACTATGATCATTTTTAAG T 0 PASS DP=59;GPV=1;SPV=0.0022404;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:12,4:5,2 +chr10 42968825 . T C 0 PASS DP=64;GPV=1;SPV=0.0023621;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:10,4:9,2 +chr10 45836143 . T C 0 PASS DP=70;GPV=1;SPV=0.02714;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,7:14,1 +chr10 46363734 . G T 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr10 46601432 . C T 0 PASS DP=58;GPV=1;SPV=0.021449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,4:10,1 +chr10 46786273 . C T 0 PASS DP=61;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,1:13,3 +chr10 46786415 . T C 0 PASS DP=76;GPV=1;SPV=0.0053319;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,11:14,6:12,5 +chr10 48300206 . T A 0 PASS DP=44;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:2,1:1,1 +chr10 48920722 . C G 0 PASS DP=66;GPV=1;SPV=0.00030577;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,6:11,4 +chr10 48953335 . A T 0 PASS DP=41;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:15,4:4,1 +chr10 49104962 . CAG C 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,8:3,2 +chr10 49682597 . G A 0 PASS DP=29;GPV=1;SPV=0.0001999;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,4:2,5 +chr10 50116473 . G A 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,3:3,2 +chr10 50164442 . C T 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr10 50748900 . T G 0 PASS DP=53;GPV=1;SPV=0.036288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3 +chr10 51156323 . A ACACACACACACACACACC 0 PASS DP=41;GPV=1;SPV=0.0053105;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1 +chr10 52939279 . G A 0 PASS DP=58;GPV=1;SPV=0.025045;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr10 55084458 . G A 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,4:4,1 +chr10 55192730 . T G 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,3:8,1 +chr10 55418614 . G T 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,6:8,6 +chr10 55537439 . T G 0 PASS DP=68;GPV=1;SPV=0.017193;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:19,3:8,5 +chr10 55894485 . G T 0 PASS DP=56;GPV=1;SPV=0.00063544;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,8:12,4 +chr10 56911826 . C A 0 PASS DP=59;GPV=1;SPV=7.2622e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,7:8,7 +chr10 57270463 . C CA 0 PASS DP=35;GPV=1;SPV=0.017674;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:8,3:2,2 +chr10 57509335 . C CT 0 PASS DP=25;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,6:0,3:0,3 +chr10 58946152 . G A 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,2:14,3 +chr10 59748091 . G GT 0 PASS DP=40;GPV=1;SPV=0.015939;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:13,6:3,1 +chr10 61048481 . C T 0 PASS DP=56;GPV=1;SPV=0.00034257;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:13,5:8,10 +chr10 62430253 . GT G 0 PASS DP=32;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,3:3,2 +chr10 63031554 . T A 0 PASS DP=44;GPV=1;SPV=0.00026061;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,5:5,5 +chr10 63314956 . G GT 0 PASS DP=34;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,6:1,1 +chr10 63742380 . A T 0 PASS DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:17,3:4,3 +chr10 64077470 . T G 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr10 64530430 . A ATG 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,6:4,1 +chr10 65555929 . C CAAAAAAAA 0 PASS DP=35;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:4,5:4,1 +chr10 66157510 . G T 0 PASS DP=63;GPV=1;SPV=0.19426;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,5:12,4:16,1 +chr10 66346234 . TATATATATATATAGAGAGAGAGAGAGAG T 0 PASS DP=28;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,4:1,1 +chr10 66767456 . C CAA 0 PASS DP=38;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,7:4,1 +chr10 67420280 . AT A 0 PASS DP=70;GPV=1;SPV=0.00036759;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:11,7:16,5 +chr10 67762186 . A C 0 PASS DP=34;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,2:1,1:2,1 +chr10 69539382 . A AGAAGAGGAAGAG 0 PASS DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,2:0,2 +chr10 71926124 . T TTG 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,2:9,2 +chr10 72448151 . C G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr10 74011165 . CA C 0 PASS DP=29;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1 +chr10 74961333 . A T 0 PASS DP=53;GPV=1;SPV=0.00043265;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,6:5,4 +chr10 76077992 . ATTTTTTT A 0 PASS DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:7,3:5,3 +chr10 76627257 . AGTGTGTGTGTGTGT A 0 PASS DP=27;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:2,3:4,1 +chr10 77171402 . T C 0 PASS DP=34;GPV=1;SPV=0.2364;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,1:6,4 +chr10 77324940 . ACTCTCTCTCT A 0 PASS DP=35;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:10,3:3,2 +chr10 78148347 . T TC 0 PASS DP=57;GPV=1;SPV=0.0013435;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:9,1:10,7 +chr10 78759385 . G A 0 PASS DP=23;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,2:6,2:0,0 +chr10 79700446 . T C 0 PASS DP=74;GPV=1;SPV=0.048408;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,6:10,3 +chr10 79773554 . AT A 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,1:9,3 +chr10 80032868 . T TAAA 0 PASS DP=30;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:3,1:0,1 +chr10 80041722 . G A 0 PASS DP=22;GPV=1;SPV=0.0047619;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,6:0,2:0,4 +chr10 80534827 . A G 0 PASS DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,3:1,1 +chr10 81510195 . C CT 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:4,5:6,3 +chr10 82109581 . A G 0 PASS DP=40;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,3:4,2:2,1 +chr10 83040096 . C T 0 PASS DP=45;GPV=1;SPV=0.00042856;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,4:3,3 +chr10 84157895 . A G 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,2:5,6 +chr10 85120251 . C CT 0 PASS DP=35;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:5,2:4,2 +chr10 86340312 . G T 0 PASS DP=65;GPV=1;SPV=0.00014662;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,5:8,4 +chr10 87203329 . A ATGTGTGTG 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:7,8:2,1 +chr10 87239603 . G T 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr10 87592174 . A G 0 PASS DP=44;GPV=1;SPV=0.035604;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,2:9,4 +chr10 92098160 . TAAAAAAAAAAAAA T 0 PASS DP=24;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1 +chr10 92966287 . T A 0 PASS DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,1:8,4 +chr10 93188392 . TG T 0 PASS DP=57;GPV=1;SPV=0.0036233;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,6:7,6 +chr10 93693518 . TATATATATACACC T 0 PASS DP=35;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr10 94530854 . CT C 0 PASS DP=22;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,3:1,2 +chr10 95041787 . CAAAAA C 0 PASS DP=28;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,7:3,1 +chr10 97700201 . G A 0 PASS DP=69;GPV=1;SPV=0.085385;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,3:18,1 +chr10 97700202 . C G 0 PASS DP=73;GPV=1;SPV=0.056634;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,2:20,3 +chr10 97700203 . A G 0 PASS DP=69;GPV=1;SPV=0.051231;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:15,2:19,3 +chr10 99198067 . C CA 0 PASS DP=33;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:8,8:6,2 +chr10 99401166 . C A 0 PASS DP=59;GPV=1;SPV=2.4155e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,7:6,5 +chr10 99600898 . TC T 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,3:13,1 +chr10 99825071 . T G 0 PASS DP=59;GPV=1;SPV=0.046347;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,1:9,5 +chr10 100694253 . C A 0 PASS DP=51;GPV=1;SPV=3.2757e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,7:6,5 +chr10 101429504 . T TC 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr10 102476042 . G GTT 0 PASS DP=37;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:8,4:6,1 +chr10 102476051 . G T 0 PASS DP=41;GPV=1;SPV=0.00014085;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:5,6:5,7 +chr10 102476052 . G T 0 PASS DP=40;GPV=1;SPV=9.186e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,16:5,8:4,8 +chr10 103265250 . AAAAG A 0 PASS DP=37;GPV=1;SPV=0.0027776;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,4:4,5 +chr10 105454819 . C CTA 0 PASS DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:4,2:0,0 +chr10 105672567 . C CTTT 0 PASS DP=23;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,6:2,4:0,2 +chr10 105782821 . CTT C 0 PASS DP=23;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,4:1,1 +chr10 105825981 . C T 0 PASS DP=45;GPV=1;SPV=2.5102e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:5,6:1,4 +chr10 106774426 . A AGT 0 PASS DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,2:13,4 +chr10 106994063 . C CA 0 PASS DP=31;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:9,6:1,1 +chr10 108584901 . G A 0 PASS DP=57;GPV=1;SPV=0.00045891;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:8,6:12,5 +chr10 109346489 . A AT 0 PASS DP=55;GPV=1;SPV=0.0336;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:8,3:12,1 +chr10 109533268 . T TAA 0 PASS DP=39;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,10:2,7:4,3 +chr10 109742465 . C CA 0 PASS DP=43;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:9,7:7,1 +chr10 111192642 . G GA 0 PASS DP=33;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,5:2,3 +chr10 111342364 . C T 0 PASS DP=56;GPV=1;SPV=2.0246e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,19:8,7:9,12 +chr10 112744459 . C CT 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,3:6,6 +chr10 115000596 . A AAGAG 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,1:4,3 +chr10 115515318 . C CTT 0 PASS DP=33;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:0,5:3,3 +chr10 115661890 . G T 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr10 118879687 . A AAGAAAGAAAGAAAGAG 0 PASS DP=38;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:0,5:0,2:0,3 +chr10 118924791 . G A 0 PASS DP=49;GPV=1;SPV=0.026941;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,2:12,4 +chr10 120990546 . G GTT 0 PASS DP=22;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,3:2,2 +chr10 121200757 . T TA 0 PASS DP=45;GPV=1;SPV=0.00544;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,9:7,2 +chr10 121385846 . C CAA 0 PASS DP=18;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:1,4:1,1 +chr10 123094546 . C G 0 PASS DP=50;GPV=1;SPV=4.2836e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,6:4,6 +chr10 124912341 . CT C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:5,2:2,2 +chr10 125889586 . G C 0 PASS DP=122;GPV=1;SPV=0.0019405;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:54,9:43,8:11,1 +chr10 128205910 . G C 0 PASS DP=60;GPV=1;SPV=1.5174e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,5:5,5 +chr10 128219388 . C T 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,2:4,2 +chr10 128430438 . C T 0 PASS DP=77;GPV=1;SPV=1.8089e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:13,11:10,6 +chr10 128924462 . C CTATCATCTATCT 0 PASS DP=40;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,8:4,2:2,6 +chr10 129736461 . C A 0 PASS DP=44;GPV=1;SPV=0.004671;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:4,6:9,3 +chr10 129736462 . C T 0 PASS DP=46;GPV=1;SPV=0.0054795;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,7:10,3 +chr10 129736463 . G T 0 PASS DP=45;GPV=1;SPV=0.0068797;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:5,7:10,3 +chr10 130655022 . CAG C 0 PASS DP=24;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,3:2,2 +chr10 132218551 . G A 0 PASS DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,4:11,1 +chr10 132268768 . CCTGT C 0 PASS DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chr10 132548792 . C CT 0 PASS DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr10 133011539 . AGTGTGTGATGTGTGTTAGC A 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2 +chr10 133658890 . C T 0 PASS DP=199;GPV=1;SPV=0.010381;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:81,19:48,11:33,8 +chr11 194825 . A G 0 PASS DP=25;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,3:9,1 +chr11 1681722 . C A 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:3,5:8,1 +chr11 1681723 . C A 0 PASS DP=35;GPV=1;SPV=0.015843;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,5:6,1 +chr11 1874014 . G C 0 PASS DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,2:2,3 +chr11 3204328 . G GCAGGCACC 0 PASS DP=44;GPV=1;SPV=0.027558;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:12,5:8,2 +chr11 3702326 . CT C 0 PASS DP=44;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,6:2,2:5,4 +chr11 4229359 . C G 0 PASS DP=51;GPV=1;SPV=0.0053956;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:10,4:5,7 +chr11 4318596 . T A 0 PASS DP=97;GPV=1;SPV=0.031452;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:21,2:24,13 +chr11 4322328 . G T 0 PASS DP=105;GPV=1;SPV=0.043254;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:21,7:23,1 +chr11 4360623 . G GA 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,2:12,2 +chr11 4453530 . ATTTTTTTTTTTT A 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2 +chr11 6989150 . C CA 0 PASS DP=34;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:6,4:4,1 +chr11 7745587 . C A 0 PASS DP=57;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:1,3:0,0:1,3 +chr11 8979905 . C CT 0 PASS DP=31;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,3:7,4 +chr11 12608045 . CA C 0 PASS DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,7:3,1 +chr11 13020278 . C CAAA 0 PASS DP=29;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,5:4,1 +chr11 15814860 . A G 0 PASS DP=49;GPV=1;SPV=7.0087e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:7,7:3,5 +chr11 16177623 . C A 0 PASS DP=54;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,2:2,1:3,1 +chr11 17317974 . C CT 0 PASS DP=28;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,2:5,3 +chr11 18076632 . AAAG A 0 PASS DP=28;GPV=1;SPV=0.047343;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,2:3,2 +chr11 19036353 . G A 0 PASS DP=51;GPV=1;SPV=0.0022441;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:8,7:7,9 +chr11 19709546 . CAA C 0 PASS DP=33;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:4,4:3,2 +chr11 19861261 . G A 0 PASS DP=61;GPV=1;SPV=0.01632;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,1:14,5 +chr11 21185293 . CTT C 0 PASS DP=28;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:2,2:1,2 +chr11 22978993 . T C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr11 23077020 . TAGATATGAAACATCTGTACACTGAATAGTATAAAACA T 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,3:13,1 +chr11 23723103 . A G 0 PASS DP=36;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,4:2,3:3,1 +chr11 24122300 . T A 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,3:10,1 +chr11 25136860 . T C 0 PASS DP=78;GPV=1;SPV=0.00011229;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:16,10:14,4 +chr11 25635713 . C G 0 PASS DP=51;GPV=1;SPV=0.016747;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,4:11,6 +chr11 25642808 . G A 0 PASS DP=40;GPV=1;SPV=0.00048101;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,18:5,9:4,9 +chr11 27463067 . C CA 0 PASS DP=27;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:1,5:3,1 +chr11 28236433 . G T 0 PASS DP=50;GPV=1;SPV=0.00052187;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,5:6,4 +chr11 28287156 . ATG A 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:3,6:0,1 +chr11 29179215 . CT C 0 PASS DP=44;GPV=1;SPV=0.0013136;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr11 29506307 . G T 0 PASS DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:9,5:8,8 +chr11 31283971 . C CCT 0 PASS DP=32;GPV=1;SPV=0.0059539;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:3,7:5,7 +chr11 31840982 . CCTTTCTTT C 0 PASS DP=34;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:1,1:7,4 +chr11 32421397 . G T 0 PASS DP=64;GPV=1;SPV=9.8512e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:11,6:7,8 +chr11 32522513 . T TCTTA 0 PASS DP=22;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:0,0:5,4 +chr11 32581434 . C CGT 0 PASS DP=36;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:2,6:2,3 +chr11 33186819 . AT A 0 PASS DP=29;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr11 34520272 . GT G 0 PASS DP=45;GPV=1;SPV=0.037022;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:8,5:10,3 +chr11 34520276 . T G 0 PASS DP=44;GPV=1;SPV=0.031869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:5,5:12,3 +chr11 34926224 . G A 0 PASS DP=59;GPV=1;SPV=0.00048775;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4 +chr11 36209353 . CTT C 0 PASS DP=26;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1 +chr11 36797793 . A AT 0 PASS DP=30;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,4:6,1 +chr11 37022094 . C T 0 PASS DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,1:14,4 +chr11 37035328 . C CTT 0 PASS DP=29;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:0,7:0,6:0,1 +chr11 37347904 . A G 0 PASS DP=34;GPV=1;SPV=0.029433;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chr11 37347998 . ATG A 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chr11 37744880 . A G 0 PASS DP=160;GPV=1;SPV=0.034292;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:66,13:36,7:30,6 +chr11 37941477 . T C 0 PASS DP=48;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,4:2,3:0,1 +chr11 39296506 . A AT 0 PASS DP=56;GPV=1;SPV=2.1371e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:13,11:4,7 +chr11 39574955 . T A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr11 40476116 . T A 0 PASS DP=54;GPV=1;SPV=0.000837;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,4:9,6 +chr11 40978118 . A T 0 PASS DP=68;GPV=1;SPV=6.3944e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,8:6,5 +chr11 41523661 . CATTG C 0 PASS DP=46;GPV=1;SPV=0.0068131;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,5:11,6 +chr11 41561930 . T TAA 0 PASS DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1 +chr11 43157285 . C T 0 PASS DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,6:8,6 +chr11 43831167 . T C 0 PASS DP=68;GPV=1;SPV=1.3876e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:7,7:12,11 +chr11 44509830 . G A 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr11 45105884 . C T 0 PASS DP=71;GPV=1;SPV=0.00061695;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:8,2:21,10 +chr11 45813586 . G GTT 0 PASS DP=40;GPV=1;SPV=0.030583;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1 +chr11 46630568 . C CTTTT 0 PASS DP=23;GPV=1;SPV=0.038921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,4:2,1 +chr11 46765599 . CTT C 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr11 47824052 . T C 0 PASS DP=19;GPV=1;SPV=0.12384;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:4,2:3,1 +chr11 49885748 . A G 0 PASS DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:13,2:7,7 +chr11 50171655 . C G 0 PASS DP=63;GPV=1;SPV=8.4617e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:7,9:13,3 +chr11 51252751 . T G 0 PASS DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:3,1:27,3 +chr11 51253776 . G T 0 PASS DP=119;GPV=1;SPV=0.036743;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:36,3:13,3 +chr11 51598715 . T C 0 PASS DP=214;GPV=1;SPV=0.020114;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:84,14:33,6:51,8 +chr11 51920154 . C G 0 PASS DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:19,6:7,1 +chr11 52497199 . G T 0 PASS DP=52;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:20,4:2,0 +chr11 53000384 . A T 0 PASS DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:16,5:11,1 +chr11 53000388 . C T 0 PASS DP=54;GPV=1;SPV=0.063676;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,1:7,4 +chr11 53300757 . C G 0 PASS DP=98;GPV=1;SPV=0.024789;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:17,1:20,7 +chr11 53594324 . C T 0 PASS DP=67;GPV=1;SPV=0.013782;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,4:6,4 +chr11 53598678 . G T 0 PASS DP=102;GPV=1;SPV=0.0015682;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,18:19,8:20,10 +chr11 54400380 . A G 0 PASS DP=105;GPV=1;SPV=0.01321;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,7:21,5:30,2 +chr11 54400735 . T G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr11 54400754 . T C 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr11 54401959 . TG T 0 PASS DP=91;GPV=1;SPV=0.030542;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:34,4:12,2 +chr11 54418755 . A G 0 PASS DP=465;GPV=1;SPV=0.049731;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:215:190,25:89,15:101,10 +chr11 54528315 . T C 0 PASS DP=70;GPV=1;SPV=0.089706;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:11,3:24,1 +chr11 55549822 . A G 0 PASS DP=60;GPV=1;SPV=6.2662e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:7,5:10,6 +chr11 55978381 . TAAAAAAAAAAAAAAAAA T 0 PASS DP=25;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:3,3:5,3 +chr11 57121117 . G GT 0 PASS DP=55;GPV=1;SPV=0.0036768;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:9,4:5,1 +chr11 58010671 . T C 0 PASS DP=40;GPV=1;SPV=0.033264;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,1:5,5 +chr11 58427783 . G C 0 PASS DP=70;GPV=1;SPV=0.00018235;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:14,7:13,7 +chr11 58436136 . CA C 0 PASS DP=35;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,4:3,1 +chr11 59106681 . G GCCGCCAGCGCGCGGCTC 0 PASS DP=22;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,3:4,3 +chr11 60865847 . TTTTC T 0 PASS DP=23;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,2:3,6 +chr11 62279222 . C T 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr11 63191686 . T C 0 PASS DP=61;GPV=1;SPV=0.0025127;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:12,7:9,12 +chr11 63483785 . ATATATATATATATATGTATATAT A 0 PASS DP=25;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:2,4:3,3 +chr11 63526790 . A G 0 PASS DP=68;GPV=1;SPV=1.1878e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:5,8:13,4 +chr11 63734734 . A AACACAC 0 PASS DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,1:6,6 +chr11 64271296 . T A 0 PASS DP=22;GPV=1;SPV=0.0075758;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,6:0,4:0,2 +chr11 65513703 . A G 0 PASS DP=46;GPV=1;SPV=3.2742e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:2,4:3,7 +chr11 65762828 . C A 0 PASS DP=52;GPV=1;SPV=0.019226;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,4:7,5 +chr11 67923129 . G T 0 PASS DP=79;GPV=1;SPV=0.019344;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:17,7:16,1 +chr11 68490423 . G A 0 PASS DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,6:7,5 +chr11 68861507 . A G 0 PASS DP=55;GPV=1;SPV=0.012958;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,3:8,4 +chr11 71673775 . A G 0 PASS DP=29;GPV=1;SPV=0.010572;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,3:5,3 +chr11 71755076 . A T 0 PASS DP=64;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,4:12,1 +chr11 72049585 . T A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr11 73943269 . GT G 0 PASS DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,3:1,2 +chr11 74987890 . TTTTTTTTC T 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:1,4:2,4 +chr11 77171385 . C T 0 PASS DP=77;GPV=1;SPV=1.8905e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,5:11,8 +chr11 79616351 . T C 0 PASS DP=54;GPV=1;SPV=8.9618e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,8:7,7 +chr11 82112555 . C CTG 0 PASS DP=49;GPV=1;SPV=0.030499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:7,3:4,3 +chr11 82588774 . A C 0 PASS DP=38;GPV=1;SPV=0.032243;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1 +chr11 82651015 . TAGAGAATCCAAACTGCAACACATCTCAGGCAGCAAATGAGA T 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr11 83511087 . G GACACACACACACACAC 0 PASS DP=25;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:6,2:2,2 +chr11 84106954 . AAGAG A 0 PASS DP=34;GPV=1;SPV=0.078947;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:2,1:2,1 +chr11 85787701 . CT C 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,4:8,4 +chr11 88174640 . AAC A 0 PASS DP=49;GPV=1;SPV=0.025437;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,5:8,1 +chr11 88657202 . T C 0 PASS DP=57;GPV=1;SPV=3.5161e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,9:7,6 +chr11 89316563 . C T 0 PASS DP=41;GPV=1;SPV=0.028792;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,1:2,5 +chr11 89515369 . T G 0 PASS DP=46;GPV=1;SPV=7.554e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,7:4,5 +chr11 89667996 . A G 0 PASS DP=75;GPV=1;SPV=0.003388;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:13,6:15,1 +chr11 89716988 . C CTA 0 PASS DP=54;GPV=1;SPV=0.0035849;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:6,11:10,3 +chr11 89899896 . T A 0 PASS DP=104;GPV=1;SPV=3.8932e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:20,11:18,2 +chr11 90186730 . T A 0 PASS DP=42;GPV=1;SPV=0.00058349;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:4,3:4,9 +chr11 90568520 . G T 0 PASS DP=45;GPV=1;SPV=0.037185;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,6:5,3:4,3 +chr11 90616126 . TGGTTGGCA T 0 PASS DP=36;GPV=1;SPV=0.025519;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,4:3,2 +chr11 90616137 . A ACCCT 0 PASS DP=35;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr11 91336805 . CATATATATAT C 0 PASS DP=26;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:5,2:1,3 +chr11 92223783 . CCTCTCT C 0 PASS DP=46;GPV=1;SPV=0.043019;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr11 93490106 . G A 0 PASS DP=54;GPV=1;SPV=0.0068571;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:9,3:10,3 +chr11 94237566 . G A 0 PASS DP=516;GPV=1;SPV=0.032943;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:255:216,39:107,23:109,16 +chr11 94330670 . TC T 0 PASS DP=43;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,2:6,4 +chr11 94330675 . A T 0 PASS DP=41;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,3:3,3 +chr11 94612316 . T G 0 PASS DP=52;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:2,2:1,1:1,1 +chr11 94753306 . CT C 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr11 96558489 . C T 0 PASS DP=65;GPV=1;SPV=0.00014072;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:15,6:8,7 +chr11 96585172 . A AT 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr11 97596417 . A T 0 PASS DP=61;GPV=1;SPV=0.00039828;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:13,3:6,6 +chr11 98107766 . G C 0 PASS DP=58;GPV=1;SPV=2.1926e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,6:7,4 +chr11 98248416 . GTT G 0 PASS DP=36;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,9:2,7:3,2 +chr11 98761483 . CT C 0 PASS DP=23;GPV=1;SPV=0.0064996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:1,5:3,4 +chr11 99185885 . T A 0 PASS DP=42;GPV=1;SPV=0.0011156;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,5:5,4 +chr11 101263877 . GTATATA G 0 PASS DP=53;GPV=1;SPV=0.10966;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2 +chr11 101263885 . A G 0 PASS DP=48;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,2:8,2 +chr11 101263887 . A G 0 PASS DP=49;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,2:8,2 +chr11 101283303 . A ATTAAC 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:10,4:14,4 +chr11 101283304 . C T 0 PASS DP=66;GPV=1;SPV=0.00054466;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:9,5:13,4 +chr11 101283308 . T TTG 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:10,4:14,4 +chr11 101374333 . CT C 0 PASS DP=44;GPV=1;SPV=0.028437;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:12,3:10,6 +chr11 101600388 . G A 0 PASS DP=58;GPV=1;SPV=0.0036217;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:9,4:15,5 +chr11 101865140 . A AACAC 0 PASS DP=44;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,7:5,4:1,3 +chr11 103188222 . A G 0 PASS DP=59;GPV=1;SPV=1.9366e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:8,4:3,11 +chr11 103842758 . C CA 0 PASS DP=46;GPV=1;SPV=0.023174;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,7:10,6:10,1 +chr11 104811359 . T C 0 PASS DP=44;GPV=1;SPV=0.027005;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,8:7,7:8,1 +chr11 105161948 . GA G 0 PASS DP=26;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,1:1,3 +chr11 105491173 . TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC T 0 PASS DP=17;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:1,2:2,2 +chr11 105516595 . A C 0 PASS DP=45;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,2:4,1:2,1 +chr11 105965792 . C A 0 PASS DP=61;GPV=1;SPV=0.00049183;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:2,6:19,4 +chr11 107837525 . T TAAAA 0 PASS DP=36;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,7:6,1 +chr11 111005139 . A ATGTG 0 PASS DP=23;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:3,4:0,0 +chr11 111696514 . C T 0 PASS DP=63;GPV=1;SPV=0.00013202;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:13,5:4,4 +chr11 112273035 . TTTCCTTC T 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,2:8,3 +chr11 112645955 . CAA C 0 PASS DP=35;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,4:2,1 +chr11 113195495 . ATT A 0 PASS DP=25;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:4,1:3,3 +chr11 113507905 . GCTCT G 0 PASS DP=28;GPV=1;SPV=0.00074848;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:3,8:0,1 +chr11 113973294 . CA C 0 PASS DP=35;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,10:3,5:3,5 +chr11 114557652 . T C 0 PASS DP=30;GPV=1;SPV=0.39286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,3:5,1:4,2 +chr11 115080381 . ACAC A 0 PASS DP=47;GPV=1;SPV=0.16035;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:23,3:14,2:9,1 +chr11 116969289 . CA C 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:1,7:2,1 +chr11 117264897 . C G 0 PASS DP=57;GPV=1;SPV=4.0511e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:5,6:10,11 +chr11 119657739 . A AAATAATAAT 0 PASS DP=27;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,3:4,1:3,2 +chr11 120328678 . A AGTGTGT 0 PASS DP=29;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,3:1,2:3,1 +chr11 122859629 . A G 0 PASS DP=57;GPV=1;SPV=0.00034731;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:14,4:3,5 +chr11 124433397 . ATG A 0 PASS DP=38;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:4,5:3,2 +chr11 125189421 . G A 0 PASS DP=18;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,3:3,2:1,1 +chr11 125866611 . T G 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,2:2,3 +chr11 126707783 . A T 0 PASS DP=45;GPV=1;SPV=2.8326e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,19:3,10:6,9 +chr11 129693712 . A G 0 PASS DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,3:1,3:0,0 +chr11 130641107 . CTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.0063246;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,5:1,3 +chr11 131680604 . C T 0 PASS DP=113;GPV=1;SPV=0.014972;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,5:15,4:20,1 +chr11 131733467 . C T 0 PASS DP=46;GPV=1;SPV=0.17314;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:9,2:19,3 +chr11 132521000 . C A 0 PASS DP=58;GPV=1;SPV=0.0093079;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,1:10,5 +chr12 707613 . TTC T 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr12 1440600 . TTGTGTG T 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,2:4,2 +chr12 1516164 . C CTT 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:5,3:4,1 +chr12 2545212 . A AT 0 PASS DP=29;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:3,5:0,3 +chr12 2883075 . A AAAAAAAAACAAC 0 PASS DP=28;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:3,2:3,5 +chr12 3666358 . T C 0 PASS DP=34;GPV=1;SPV=0.091388;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,6:7,5:8,1 +chr12 6156091 . CT C 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,4:0,2 +chr12 6591707 . A T 0 PASS DP=69;GPV=1;SPV=2.5948e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,3:10,11 +chr12 6617994 . G GACACACACAC 0 PASS DP=46;GPV=1;SPV=0.027154;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:8,1:8,4 +chr12 7483843 . T A 0 PASS DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr12 7682835 . C CT 0 PASS DP=19;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,5:0,4:0,1 +chr12 7883267 . T C 0 PASS DP=25;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:4,1:2,5 +chr12 9301106 . C T 0 PASS DP=89;GPV=1;SPV=0.048396;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:23,7:14,1 +chr12 9428531 . T C 0 PASS DP=61;GPV=1;SPV=0.028561;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,1:12,4 +chr12 9431081 . C T 0 PASS DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,3:9,4 +chr12 9442266 . T A 0 PASS DP=38;GPV=1;SPV=0.16084;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,4:13,1 +chr12 9444361 . C T 0 PASS DP=57;GPV=1;SPV=0.017231;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,4:5,3 +chr12 9463271 . A T 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr12 11302137 . C T 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr12 11302264 . C T 0 PASS DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr12 14280488 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:2,5:4,1 +chr12 14481935 . G A 0 PASS DP=55;GPV=1;SPV=0.037091;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr12 14481936 . C T 0 PASS DP=54;GPV=1;SPV=0.04;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr12 14949106 . T C 0 PASS DP=39;GPV=1;SPV=0.0051219;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:7,9:5,4 +chr12 15681305 . G GTAA 0 PASS DP=40;GPV=1;SPV=0.0079383;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,5:5,3 +chr12 15901861 . A C 0 PASS DP=32;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,2:0,1:1,1 +chr12 17997427 . C T 0 PASS DP=61;GPV=1;SPV=9.1903e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,20:7,4:6,16 +chr12 18517031 . C CT 0 PASS DP=51;GPV=1;SPV=0.02677;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,4:8,4 +chr12 19084009 . C T 0 PASS DP=49;GPV=1;SPV=1.1033e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:5,9:7,6 +chr12 21396055 . T G 0 PASS DP=55;GPV=1;SPV=3.1465e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:6,8:7,7 +chr12 21926363 . G T 0 PASS DP=64;GPV=1;SPV=8.6637e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,2:6,8 +chr12 21982167 . C T 0 PASS DP=63;GPV=1;SPV=0.06037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:8,2:20,2 +chr12 22432849 . G T 0 PASS DP=43;GPV=1;SPV=0.010774;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,4:12,4 +chr12 22432855 . T G 0 PASS DP=44;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,8:6,5:10,3 +chr12 24075277 . T TA 0 PASS DP=22;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr12 25224183 . TA T 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,5:3,3 +chr12 25225290 . A T 0 PASS DP=25;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,4:1,3:0,1 +chr12 25271961 . A ATGTGTGTG 0 PASS DP=37;GPV=1;SPV=0.0032306;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,11:4,8:1,3 +chr12 26232934 . T TA 0 PASS DP=26;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:3,7:0,2 +chr12 26568011 . T TATATA 0 PASS DP=25;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:2,1:0,1 +chr12 26591083 . A C 0 PASS DP=17;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:1,1:4,1 +chr12 28605811 . G T 0 PASS DP=46;GPV=1;SPV=0.00028966;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,4:7,4 +chr12 28932263 . AAG A 0 PASS DP=42;GPV=1;SPV=0.0058287;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:4,3:7,2 +chr12 28980001 . A T 0 PASS DP=45;GPV=1;SPV=5.6087e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:1,10:0,6:1,4 +chr12 29081657 . GGTGTGT G 0 PASS DP=26;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:1,5:5,4 +chr12 30658876 . C CT 0 PASS DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,4:2,2 +chr12 30790062 . T C 0 PASS DP=39;GPV=1;SPV=0.028751;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:12,6:6,3 +chr12 31070300 . A ATTTTTTTTTTT 0 PASS DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:1,2:13,3 +chr12 31183168 . A AAATG 0 PASS DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr12 31741127 . G T 0 PASS DP=28;GPV=1;SPV=0.011071;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,7:4,4 +chr12 31890534 . T C 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1 +chr12 32005286 . A ATATG 0 PASS DP=31;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:3,5:8,2 +chr12 32659204 . A G 0 PASS DP=76;GPV=1;SPV=5.8035e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:16,6:8,10 +chr12 33360524 . GT G 0 PASS DP=45;GPV=1;SPV=0.0041497;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,4:8,4 +chr12 33412362 . T C 0 PASS DP=57;GPV=1;SPV=0.0026972;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,7:8,7 +chr12 33836693 . G A 0 PASS DP=47;GPV=1;SPV=0.0018489;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,1:8,6 +chr12 34334877 . A T 0 PASS DP=61;GPV=1;SPV=0.019962;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:8,1:16,4 +chr12 34778762 . G T 0 PASS DP=50;GPV=1;SPV=0.022623;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:3,1:13,5 +chr12 34897599 . C T 0 PASS DP=105;GPV=1;SPV=0.024618;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:38,10:0,1 +chr12 34899863 . T G 0 PASS DP=70;GPV=1;SPV=0.029889;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr12 34945692 . G C 0 PASS DP=101;GPV=1;SPV=0.026239;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:8,4:26,6 +chr12 35078228 . G A 0 PASS DP=69;GPV=1;SPV=0.02537;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:20,7:6,2 +chr12 35186013 . A G 0 PASS DP=32;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:1,2:8,4 +chr12 35346780 . C T 0 PASS DP=48;GPV=1;SPV=0.14084;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:26,4:0,0 +chr12 35780582 . T A 0 PASS DP=143;GPV=1;SPV=0.029253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:63,9:35,8:28,1 +chr12 35780597 . A T 0 PASS DP=135;GPV=1;SPV=0.0032527;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:45,19:26,11:19,8 +chr12 36311802 . C A 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,3:13,2 +chr12 36311803 . C A 0 PASS DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2 +chr12 36464687 . T A 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 36721677 . G C 0 PASS DP=61;GPV=1;SPV=0.068908;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:26,4:2,0 +chr12 36885604 . G C 0 PASS DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr12 36941010 . G C 0 PASS DP=81;GPV=1;SPV=0.017934;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:25,8:7,2 +chr12 36941239 . A G 0 PASS DP=118;GPV=1;SPV=0.015193;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:27,4:27,2 +chr12 36991443 . G T 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:10,3:2,1 +chr12 37247184 . T G 0 PASS DP=27;GPV=1;SPV=0.032647;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,4:3,6 +chr12 37263826 . C A 0 PASS DP=37;GPV=1;SPV=5.5832e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:3,5:4,5 +chr12 37263827 . T A 0 PASS DP=37;GPV=1;SPV=2.299e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,5:3,5 +chr12 37441936 . T C 0 PASS DP=81;GPV=1;SPV=0.016312;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,8:18,3 +chr12 38561510 . A AT 0 PASS DP=30;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,8:0,3:2,5 +chr12 38894658 . ACTCTCTCTCTCTCT A 0 PASS DP=29;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:2,5:3,2 +chr12 39325498 . A ATTTTTT 0 PASS DP=33;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,2:6,4 +chr12 39925030 . A ATTT 0 PASS DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:0,5:3,1 +chr12 40630542 . TTTCTTTC T 0 PASS DP=41;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,6:7,5:4,1 +chr12 40706002 . C A 0 PASS DP=62;GPV=1;SPV=0.026404;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,4:18,2 +chr12 41571376 . TCACA T 0 PASS DP=26;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:5,1:1,5 +chr12 43615239 . G GTTT 0 PASS DP=33;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,8:1,5:1,3 +chr12 43741568 . C T 0 PASS DP=56;GPV=1;SPV=0.0054545;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,2:11,4 +chr12 43958795 . C CT 0 PASS DP=48;GPV=1;SPV=0.029609;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,4:8,6 +chr12 44311797 . G GTA 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2 +chr12 45435714 . A G 0 PASS DP=65;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:1,1:0,1 +chr12 47354714 . T TATAG 0 PASS DP=32;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,10:1,4:2,6 +chr12 48912437 . C CAAAAA 0 PASS DP=33;GPV=1;SPV=0.091388;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:8,5:7,1 +chr12 49036478 . AT A 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,2:4,2 +chr12 49787094 . A AT 0 PASS DP=35;GPV=1;SPV=0.019118;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1 +chr12 51424037 . C CA 0 PASS DP=20;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:2,4:0,1 +chr12 53162338 . C T 0 PASS DP=46;GPV=1;SPV=0.024686;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:6,7:13,8 +chr12 55067453 . T C 0 PASS DP=42;GPV=1;SPV=0.015459;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,6:9,2 +chr12 55898651 . T A 0 PASS DP=30;GPV=1;SPV=0.030651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,3:8,2 +chr12 58054993 . G A 0 PASS DP=31;GPV=1;SPV=0.01458;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,5:3,4 +chr12 58378552 . CA C 0 PASS DP=48;GPV=1;SPV=0.00057702;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,6:9,5 +chr12 58696750 . C T 0 PASS DP=69;GPV=1;SPV=2.3275e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,10:10,10 +chr12 58856895 . G T 0 PASS DP=72;GPV=1;SPV=1.173e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:9,8:11,9 +chr12 59883789 . A G 0 PASS DP=56;GPV=1;SPV=1.3208e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,10:5,3 +chr12 60869682 . TTTCCTTCCTTCCTTCCTTCCTTCC T 0 PASS DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:7,1:11,4 +chr12 60869725 . C T 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5 +chr12 63674050 . G A 0 PASS DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,6:7,6 +chr12 64040804 . G T 0 PASS DP=61;GPV=1;SPV=0.0020355;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,4:9,3 +chr12 64366214 . C T 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chr12 64676467 . CTTT C 0 PASS DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:1,3:6,1 +chr12 65738517 . T TTCTCTC 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,4:4,1 +chr12 66497260 . A T 0 PASS DP=46;GPV=1;SPV=0.00053433;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chr12 67380425 . C A 0 PASS DP=33;GPV=1;SPV=0.018404;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,2:5,3 +chr12 67380512 . TA T 0 PASS DP=36;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,6:3,4 +chr12 67678215 . A AAAAAAAAAAAAGTTCTC 0 PASS DP=50;GPV=1;SPV=0.0058074;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:10,3:4,7 +chr12 68632146 . G T 0 PASS DP=27;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:4,1:1,1 +chr12 69995387 . GTT G 0 PASS DP=21;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr12 70564842 . TA T 0 PASS DP=46;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:4,6:7,1 +chr12 71216197 . C CACACACAG 0 PASS DP=49;GPV=1;SPV=0.00017491;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:10,8:3,2 +chr12 76723001 . GTATATA G 0 PASS DP=19;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,2:2,2 +chr12 77043362 . T C 0 PASS DP=49;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,6:9,5 +chr12 79179028 . A C 0 PASS DP=25;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:2,1:5,1 +chr12 81007094 . A G 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:18,3:5,2 +chr12 81007095 . G T 0 PASS DP=52;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:17,2:4,3 +chr12 81954178 . G A 0 PASS DP=57;GPV=1;SPV=1.062e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:2,5:7,9 +chr12 83586957 . A G 0 PASS DP=66;GPV=1;SPV=0.048357;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,7:10,1 +chr12 83837218 . C A 0 PASS DP=63;GPV=1;SPV=0.013982;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:7,4:16,1 +chr12 85354446 . C T 0 PASS DP=63;GPV=1;SPV=0.00027927;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:13,5:4,3 +chr12 92151443 . C CA 0 PASS DP=49;GPV=1;SPV=0.00518;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,7:4,4 +chr12 93365275 . CT C 0 PASS DP=33;GPV=1;SPV=0.0098985;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,4:4,2 +chr12 93463255 . C CTT 0 PASS DP=24;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:1,8:5,1 +chr12 93492513 . G A 0 PASS DP=59;GPV=1;SPV=0.00020271;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:10,8:12,8 +chr12 94040342 . G T 0 PASS DP=37;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,5:2,1:4,4 +chr12 94986642 . AC A 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,4:6,4 +chr12 95101681 . C CT 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,2:2,2 +chr12 95654770 . T A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr12 96453881 . GATATATATATATATATATATAT G 0 PASS DP=26;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,7:1,6:1,1 +chr12 97335973 . G A 0 PASS DP=30;GPV=1;SPV=0.017028;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:2,3:4,3 +chr12 97598862 . G A 0 PASS DP=65;GPV=1;SPV=2.244e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:8,10:6,6 +chr12 98257900 . G A 0 PASS DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1 +chr12 99761065 . C CAA 0 PASS DP=31;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,4:3,4 +chr12 99864079 . C CA 0 PASS DP=22;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,3:0,1 +chr12 100364047 . C CAA 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:8,5:2,1 +chr12 101948762 . T TACACACAC 0 PASS DP=33;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,6:7,3:1,3 +chr12 102476410 . T TGAGAGAGAGAGA 0 PASS DP=35;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,6:2,2 +chr12 103085541 . AT A 0 PASS DP=63;GPV=1;SPV=2.2309e-07;SS=2;SSC=66;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,17:8,8:5,9 +chr12 103166076 . A AGAAGGAAG 0 PASS DP=49;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:13,3:3,5 +chr12 103619755 . CG C 0 PASS DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4 +chr12 103974988 . AAAAAAG A 0 PASS DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,7:8,3 +chr12 104001705 . A AT 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr12 104267707 . T C 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 104454404 . AAC A 0 PASS DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3 +chr12 104454411 . C A 0 PASS DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,2:14,2 +chr12 105100364 . CTCTTT C 0 PASS DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:4,1:12,5 +chr12 106054475 . G T 0 PASS DP=52;GPV=1;SPV=0.00086916;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:3,4:11,3 +chr12 107205546 . C CTT 0 PASS DP=26;GPV=1;SPV=0.0076174;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,9:0,7:1,2 +chr12 107944897 . G A 0 PASS DP=57;GPV=1;SPV=0.016363;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:11,1:13,5 +chr12 108096721 . C T 0 PASS DP=68;GPV=1;SPV=8.1433e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,18:11,8:4,10 +chr12 109572411 . A AT 0 PASS DP=34;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1 +chr12 113488953 . CCTTTCTTTCTTTCTTT C 0 PASS DP=40;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:0,2:10,5 +chr12 113785755 . C A 0 PASS DP=67;GPV=1;SPV=0.00017884;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,5:8,5 +chr12 115281918 . T A 0 PASS DP=56;GPV=1;SPV=0.034112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,5:12,1 +chr12 115394477 . A AATGG 0 PASS DP=44;GPV=1;SPV=0.070897;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:7,3:13,2 +chr12 116566616 . T TAAA 0 PASS DP=29;GPV=1;SPV=0.057118;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:5,4:8,2 +chr12 117041342 . T C 0 PASS DP=55;GPV=1;SPV=0.0079418;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,2:8,4 +chr12 117629414 . T A 0 PASS DP=63;GPV=1;SPV=3.4873e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,5:8,6 +chr12 118888779 . T C 0 PASS DP=56;GPV=1;SPV=0.032688;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,2:11,5 +chr12 119317335 . C CT 0 PASS DP=36;GPV=1;SPV=0.033431;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:6,5:9,1 +chr12 121966423 . G T 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,2:2,3 +chr12 122016764 . C A 0 PASS DP=63;GPV=1;SPV=0.0011083;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:14,5:7,3 +chr12 122427208 . A G 0 PASS DP=34;GPV=1;SPV=0.021584;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:8,3:2,1 +chr12 122427209 . T C 0 PASS DP=31;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:6,3:1,1 +chr12 123756307 . CT C 0 PASS DP=34;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,9:2,1 +chr12 125617344 . CT C 0 PASS DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,3:3,2 +chr12 125656013 . G GA 0 PASS DP=50;GPV=1;SPV=0.029893;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,4:10,2 +chr12 127444530 . A AAT 0 PASS DP=44;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,2:8,3 +chr12 127736409 . CT C 0 PASS DP=28;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr12 128090909 . G C 0 PASS DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,3:11,3 +chr12 128295003 . G A 0 PASS DP=50;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:9,2:10,4 +chr12 128988629 . T C 0 PASS DP=21;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,4:1,1:0,3 +chr12 129187809 . C T 0 PASS DP=80;GPV=1;SPV=6.9059e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:12,12:12,7 +chr12 129521915 . AT A 0 PASS DP=56;GPV=1;SPV=0.0030216;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,4:10,4 +chr12 129525226 . GT G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr12 129877174 . T A 0 PASS DP=40;GPV=1;SPV=0.080744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,1:12,4 +chr12 130050276 . C T 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:3,1:11,6 +chr12 130441414 . A C 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,3:7,1 +chr12 131150300 . AT A 0 PASS DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:8,1:14,5 +chr12 131419456 . C G 0 PASS DP=67;GPV=1;SPV=9.2359e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:2,10:10,8 +chr12 132381475 . A G 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr12 132391135 . G A 0 PASS DP=69;GPV=1;SPV=0.0010975;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:15,3:6,4 +chr12 132919379 . CT C 0 PASS DP=28;GPV=1;SPV=0.018803;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,1:5,3 +chr13 18172309 . TAGAATGAA T 0 PASS DP=222;GPV=1;SPV=0.029173;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:102,13:48,4:54,9 +chr13 18172325 . T A 0 PASS DP=223;GPV=1;SPV=0.011983;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:93,13:39,4:54,9 +chr13 18172326 . A T 0 PASS DP=225;GPV=1;SPV=0.024745;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:97,12:43,3:54,9 +chr13 18172327 . T A 0 PASS DP=217;GPV=1;SPV=0.022597;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:89,13:42,4:47,9 +chr13 18172333 . T TTTTCATTC 0 PASS DP=223;GPV=1;SPV=0.041149;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:93,12:37,3:56,9 +chr13 18197090 . G A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,3:7,1 +chr13 18206038 . CAA C 0 PASS DP=71;GPV=1;SPV=0.032687;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,8:13,7:7,1 +chr13 18271449 . G C 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1 +chr13 18531171 . AGCAAACACCCCACAGCATGG A 0 PASS DP=74;GPV=1;SPV=0.029793;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,4:9,5 +chr13 18545200 . A G 0 PASS DP=76;GPV=1;SPV=0.019855;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,8:16,2 +chr13 18808933 . G T 0 PASS DP=79;GPV=1;SPV=0.043261;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,4:13,1 +chr13 19048992 . G A 0 PASS DP=80;GPV=1;SPV=2.8359e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:8,10:13,7 +chr13 19290200 . A AT 0 PASS DP=57;GPV=1;SPV=0.0029061;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,11:14,4:6,7 +chr13 20148253 . CT C 0 PASS DP=21;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,4:2,1 +chr13 21050147 . G GATAGATAGATAGATACATACATAC 0 PASS DP=48;GPV=1;SPV=0.031261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,6:7,3:8,3 +chr13 21853573 . T A 0 PASS DP=44;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,3:1,2:1,1 +chr13 22478011 . G T 0 PASS DP=53;GPV=1;SPV=0.00027241;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,5:9,5 +chr13 22512021 . C CAA 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,5:5,1 +chr13 22713588 . G A 0 PASS DP=69;GPV=1;SPV=0.0317;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2 +chr13 24697639 . CAA C 0 PASS DP=27;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,5:3,3:4,2 +chr13 25160257 . C CT 0 PASS DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,8:6,1 +chr13 25717440 . C A 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:2,6:4,2 +chr13 25751273 . G T 0 PASS DP=52;GPV=1;SPV=0.0003248;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:9,6:9,7 +chr13 26485192 . AG A 0 PASS DP=33;GPV=1;SPV=0.0084353;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3 +chr13 26907752 . A T 0 PASS DP=71;GPV=1;SPV=0.006277;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:19,3:10,4 +chr13 28034119 . A ATCATAT 0 PASS DP=48;GPV=1;SPV=0.0033296;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,5:7,2 +chr13 28034406 . G A 0 PASS DP=63;GPV=1;SPV=0.0016051;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,2:11,5 +chr13 28037847 . CG C 0 PASS DP=60;GPV=1;SPV=0.00086768;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,5:9,3 +chr13 28085343 . CAAAAA C 0 PASS DP=35;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:4,7:2,1 +chr13 28745358 . G A 0 PASS DP=51;GPV=1;SPV=0.00077001;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,6:6,2 +chr13 28931190 . G A 0 PASS DP=72;GPV=1;SPV=0.031154;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,1:18,4 +chr13 30523150 . C A 0 PASS DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,6:8,7 +chr13 31817645 . A G 0 PASS DP=52;GPV=1;SPV=1.3103e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,5:6,7 +chr13 32541676 . C CT 0 PASS DP=28;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,5:4,2 +chr13 32637218 . A AATAAGGGT 0 PASS DP=23;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,5:0,2:0,3 +chr13 33181267 . T TACACAC 0 PASS DP=33;GPV=1;SPV=0.021709;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,11:2,6:0,5 +chr13 33209457 . C CTTTTT 0 PASS DP=45;GPV=1;SPV=0.0005812;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,9:7,2 +chr13 34971819 . C CT 0 PASS DP=44;GPV=1;SPV=0.00071076;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2 +chr13 35813730 . C CT 0 PASS DP=29;GPV=1;SPV=0.013043;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1 +chr13 35967635 . G A 0 PASS DP=57;GPV=1;SPV=0.0013435;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:8,3:11,5 +chr13 37153528 . C T 0 PASS DP=40;GPV=1;SPV=0.026299;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:5,1:12,5 +chr13 37153529 . C G 0 PASS DP=36;GPV=1;SPV=0.027859;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:3,1:12,5 +chr13 37301190 . C CT 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr13 37309075 . CT C 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr13 37753581 . G A 0 PASS DP=41;GPV=1;SPV=0.012033;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,4:5,2 +chr13 37989356 . T TAGATAGATAGATAGATAGATAGAC 0 PASS DP=46;GPV=1;SPV=0.004158;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:6,2:8,6 +chr13 41076269 . AT A 0 PASS DP=38;GPV=1;SPV=0.18479;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:10,3:7,2 +chr13 42206975 . T TTTTCTTTC 0 PASS DP=45;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,3:14,2 +chr13 42881605 . C CTGTG 0 PASS DP=39;GPV=1;SPV=0.036102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,2:6,5 +chr13 43690259 . A T 0 PASS DP=41;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:1,2:0,0:1,2 +chr13 45211673 . C T 0 PASS DP=47;GPV=1;SPV=0.024817;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:12,2:10,5 +chr13 46788054 . G GT 0 PASS DP=63;GPV=1;SPV=0.016895;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:9,2:15,3 +chr13 48847500 . T C 0 PASS DP=25;GPV=1;SPV=0.0082418;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,3:2,1 +chr13 52256869 . T G 0 PASS DP=51;GPV=1;SPV=0.00019163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:14,8:2,4 +chr13 52519790 . C T 0 PASS DP=85;GPV=1;SPV=0.046691;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:19,3:12,2 +chr13 53000431 . C CT 0 PASS DP=50;GPV=1;SPV=0.056049;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:14,4:10,1 +chr13 53177159 . CA C 0 PASS DP=65;GPV=1;SPV=8.5151e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:11,12:9,5 +chr13 53232170 . ATCTC A 0 PASS DP=46;GPV=1;SPV=0.014585;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1 +chr13 54011938 . C T 0 PASS DP=51;GPV=1;SPV=0.0004157;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5 +chr13 55704368 . GTA G 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,4:5,2 +chr13 55704462 . A C 0 PASS DP=26;GPV=1;SPV=0.034533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:2,2:3,3 +chr13 56885075 . TTATATA T 0 PASS DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr13 57140339 . G A 0 PASS DP=98;GPV=1;SPV=0.021978;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:29,13:11,2 +chr13 57218442 . G T 0 PASS DP=63;GPV=1;SPV=0.0029833;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,5:18,4 +chr13 57395150 . C T 0 PASS DP=25;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:1,3:5,1 +chr13 57612097 . T G 0 PASS DP=49;GPV=1;SPV=0.12484;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:11,1:11,2 +chr13 57693315 . C CAT 0 PASS DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,5:4,2 +chr13 57983872 . G T 0 PASS DP=47;GPV=1;SPV=0.0034395;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,4:11,4 +chr13 58418567 . T TA 0 PASS DP=55;GPV=1;SPV=0.00010896;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,6:7,5 +chr13 58624833 . CAA C 0 PASS DP=19;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr13 60084015 . T C 0 PASS DP=50;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,4:3,3:4,1 +chr13 60941018 . G T 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,2:12,2 +chr13 62814203 . A AGT 0 PASS DP=42;GPV=1;SPV=0.010053;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,4:5,5 +chr13 64231639 . T A 0 PASS DP=27;GPV=1;SPV=2.7919e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:3,13:1,10:2,3 +chr13 68338318 . C A 0 PASS DP=61;GPV=1;SPV=0.0004629;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:14,6:8,5 +chr13 68610689 . C G 0 PASS DP=52;GPV=1;SPV=0.002076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,4:8,4 +chr13 69149741 . C CA 0 PASS DP=40;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:7,8:2,1 +chr13 69157963 . C T 0 PASS DP=51;GPV=1;SPV=3.1e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:8,4:4,14 +chr13 69412498 . ATTT A 0 PASS DP=20;GPV=1;SPV=0.0022624;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,1:1,5 +chr13 69863387 . C CAAAAGAGGATCCTAGAAGAAGACTAGGCACCAGT 0 PASS DP=37;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:10,3:8,1 +chr13 70218558 . AT A 0 PASS DP=55;GPV=1;SPV=2.4722e-08;SS=2;SSC=76;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,16:4,9:4,7 +chr13 71783965 . A T 0 PASS DP=41;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,3:1,2:0,1 +chr13 72153116 . A G 0 PASS DP=57;GPV=1;SPV=1.172e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:9,12:4,4 +chr13 72358634 . C A 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,2:4,7 +chr13 72990213 . CA C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr13 73108638 . A ATC 0 PASS DP=63;GPV=1;SPV=0.068908;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:12,2:16,2 +chr13 73915307 . T G 0 PASS DP=52;GPV=1;SPV=4.5491e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,19:8,11:5,8 +chr13 74436978 . AT A 0 PASS DP=51;GPV=1;SPV=0.383;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,4:10,3:6,1 +chr13 75687821 . A C 0 PASS DP=47;GPV=1;SPV=0.0013031;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:5,10:7,5 +chr13 76942709 . A G 0 PASS DP=55;GPV=1;SPV=0.00017947;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:7,7:10,4 +chr13 77704093 . A C 0 PASS DP=114;GPV=1;SPV=0.033883;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:55,11:29,7:26,4 +chr13 78665322 . A C 0 PASS DP=19;GPV=1;SPV=0.083333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,2:0,1:1,1 +chr13 81904389 . T A 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,1:11,3 +chr13 82169368 . G A 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,2:3,3 +chr13 82458884 . T TA 0 PASS DP=49;GPV=1;SPV=0.0016308;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:12,6:4,2 +chr13 85227345 . T A 0 PASS DP=55;GPV=1;SPV=0.0010272;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,4:7,6 +chr13 85333993 . T G 0 PASS DP=44;GPV=1;SPV=0.0026298;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:3,4:9,2 +chr13 85922076 . A G 0 PASS DP=59;GPV=1;SPV=0.00013428;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,5:5,5 +chr13 86063548 . C T 0 PASS DP=44;GPV=1;SPV=0.00070165;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,5:5,4 +chr13 86498492 . G T 0 PASS DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr13 87124262 . G A 0 PASS DP=38;GPV=1;SPV=0.0067244;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,3:3,3 +chr13 88200508 . C A 0 PASS DP=28;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr13 91746505 . A T 0 PASS DP=65;GPV=1;SPV=0.060769;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:19,3:14,2 +chr13 92930628 . TATATATTCCAGATATAA T 0 PASS DP=45;GPV=1;SPV=0.0043101;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:8,3:6,4 +chr13 93376776 . CT C 0 PASS DP=45;GPV=1;SPV=0.00056132;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,6:6,3 +chr13 93667735 . G GTTTTTTTTTT 0 PASS DP=39;GPV=1;SPV=0.089257;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:11,4:7,1 +chr13 93905097 . A AG 0 PASS DP=28;GPV=1;SPV=0.0025519;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,10:2,7:2,3 +chr13 94088595 . A G 0 PASS DP=21;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,2:0,0 +chr13 94288946 . GATAGATAT G 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr13 94585799 . CA C 0 PASS DP=39;GPV=1;SPV=0.0051416;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,6:5,4 +chr13 96105006 . G A 0 PASS DP=39;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:6,3:4,1 +chr13 97790091 . A G 0 PASS DP=54;GPV=1;SPV=0.00030733;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,4:8,4 +chr13 97852692 . G A 0 PASS DP=35;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:8,2:7,2 +chr13 97860642 . CA C 0 PASS DP=27;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,7:3,6:1,1 +chr13 99414007 . T TACACACAC 0 PASS DP=38;GPV=1;SPV=0.011679;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:4,5:7,3 +chr13 100463335 . GGT G 0 PASS DP=35;GPV=1;SPV=0.0080645;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,3:4,1 +chr13 101362815 . C T 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:10,3:6,8 +chr13 102189022 . GAAGA G 0 PASS DP=47;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,4:8,3:6,1 +chr13 103563902 . G T 0 PASS DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:10,9:9,6 +chr13 104490654 . G A 0 PASS DP=55;GPV=1;SPV=3.0818e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:8,5:3,7 +chr13 105089164 . ATATATTTATATATATGTGTATACATATATGTATATATT A 0 PASS DP=32;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,5:4,2:4,3 +chr13 105684597 . G A 0 PASS DP=54;GPV=1;SPV=0.086656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,3:13,1 +chr13 105788377 . C T 0 PASS DP=70;GPV=1;SPV=3.3475e-10;SS=2;SSC=94;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,21:3,5:8,16 +chr13 106472885 . A G 0 PASS DP=51;GPV=1;SPV=0.029272;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,3:12,1 +chr13 107911166 . G A 0 PASS DP=50;GPV=1;SPV=0.00091327;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,6:9,2 +chr13 108348447 . CTCTCTCTG C 0 PASS DP=51;GPV=1;SPV=0.0033365;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:6,6:8,5 +chr13 108425575 . G C 0 PASS DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:14,7:15,5 +chr13 109330635 . C A 0 PASS DP=64;GPV=1;SPV=0.0004259;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,7:7,3 +chr13 110497503 . C T 0 PASS DP=35;GPV=1;SPV=0.0094538;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr13 110894963 . T A 0 PASS DP=51;GPV=1;SPV=4.2116e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:9,8:5,5 +chr13 112333425 . C T 0 PASS DP=73;GPV=1;SPV=3.2072e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:13,11:7,9 +chr13 113547177 . C T 0 PASS DP=58;GPV=1;SPV=0.0018932;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:8,4:14,5 +chr13 113940556 . A G 0 PASS DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,1:5,2 +chr14 18275552 . T G 0 PASS DP=40;GPV=1;SPV=0.0010797;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,4:7,7 +chr14 18659364 . T A 0 PASS DP=139;GPV=1;SPV=0.025834;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:52,14:32,8:20,6 +chr14 18661329 . C T 0 PASS DP=157;GPV=1;SPV=0.031534;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:67,19:22,5:45,14 +chr14 18927932 . A G 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr14 19002747 . C T 0 PASS DP=229;GPV=1;SPV=0.029561;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:87,18:40,10:47,8 +chr14 19058704 . A T 0 PASS DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:12,3:20,2 +chr14 19058850 . C A 0 PASS DP=101;GPV=1;SPV=0.037114;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:15,4:26,4 +chr14 19059168 . T A 0 PASS DP=119;GPV=1;SPV=0.042542;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:36,8:17,3 +chr14 19074202 . T A 0 PASS DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,2:12,2 +chr14 19126082 . T G 0 PASS DP=105;GPV=1;SPV=0.041077;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:19,8:18,3 +chr14 19161348 . AG A 0 PASS DP=169;GPV=1;SPV=0.033162;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:68,16:31,9:37,7 +chr14 19170300 . C CTCTA 0 PASS DP=132;GPV=1;SPV=0.0043066;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:60,9:25,7:35,2 +chr14 19176820 . T G 0 PASS DP=143;GPV=1;SPV=0.0055223;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:30,8:28,8 +chr14 19241644 . G A 0 PASS DP=112;GPV=1;SPV=0.014214;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:21,4:23,1 +chr14 19267795 . C T 0 PASS DP=124;GPV=1;SPV=0.00055263;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:29,5:22,5 +chr14 19276455 . C T 0 PASS DP=83;GPV=1;SPV=0.032961;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:20,4:12,2 +chr14 19363580 . A G 0 PASS DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2 +chr14 19371982 . T C 0 PASS DP=183;GPV=1;SPV=0.012376;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:70,17:33,6:37,11 +chr14 19380912 . G A 0 PASS DP=95;GPV=1;SPV=0.049837;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:22,7:18,6 +chr14 19391950 . C T 0 PASS DP=22;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr14 19433678 . G A 0 PASS DP=33;GPV=1;SPV=0.0088061;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,5:2,2 +chr14 19475827 . T TA 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,2:7,2 +chr14 19666234 . C T 0 PASS DP=158;GPV=1;SPV=0.043643;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:62,13:31,10:31,3 +chr14 19678523 . T C 0 PASS DP=130;GPV=1;SPV=0.03683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:26,3:28,3 +chr14 19716664 . CTTTTT C 0 PASS DP=24;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1 +chr14 19780669 . C T 0 PASS DP=118;GPV=1;SPV=0.0093558;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:19,4:24,9 +chr14 20352568 . T G 0 PASS DP=35;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:4,3:2,2 +chr14 23422586 . TCTTTCTTTCTCTC T 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2 +chr14 24088803 . AT A 0 PASS DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,2:6,6 +chr14 24206345 . A G 0 PASS DP=69;GPV=1;SPV=1.0256e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:11,10:8,8 +chr14 25232587 . T TCTCC 0 PASS DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,1:3,3 +chr14 27961347 . C CT 0 PASS DP=62;GPV=1;SPV=0.056405;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,3:12,1 +chr14 28674553 . G A 0 PASS DP=50;GPV=1;SPV=0.0029061;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,7:8,4 +chr14 30361142 . C A 0 PASS DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,6:9,4 +chr14 30532663 . CTTTT C 0 PASS DP=18;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:2,4:1,1 +chr14 31937328 . G A 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr14 32462901 . C CA 0 PASS DP=24;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr14 32687408 . C A 0 PASS DP=32;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,2:3,1:4,1 +chr14 33087171 . T TA 0 PASS DP=44;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:5,1:13,3 +chr14 34643055 . AT A 0 PASS DP=44;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:1,1:3,1 +chr14 35240294 . C CTTT 0 PASS DP=19;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:3,2:0,0 +chr14 36798902 . A AAG 0 PASS DP=39;GPV=1;SPV=0.018018;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:4,6:5,1 +chr14 40019808 . T TCACACA 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,5:6,4 +chr14 41167237 . G A 0 PASS DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,4:7,3 +chr14 41175901 . G A 0 PASS DP=63;GPV=1;SPV=1.9448e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:7,3:10,9 +chr14 41243449 . A T 0 PASS DP=53;GPV=1;SPV=0.00010136;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:9,5:6,6 +chr14 41808408 . A G 0 PASS DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:4,2:0,0 +chr14 42051447 . T C 0 PASS DP=31;GPV=1;SPV=0.009581;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,6:9,2 +chr14 42070911 . TTCTCTCTCTC T 0 PASS DP=35;GPV=1;SPV=0.0055972;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:3,6:4,3 +chr14 42159445 . C CTTTCTTTCT 0 PASS DP=29;GPV=1;SPV=0.055556;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1 +chr14 45416861 . C A 0 PASS DP=56;GPV=1;SPV=0.002243;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,2:3,3 +chr14 48315922 . G A 0 PASS DP=53;GPV=1;SPV=0.0001844;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:6,8:8,1 +chr14 50122391 . C CT 0 PASS DP=20;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,5:2,1 +chr14 51144228 . C CAT 0 PASS DP=24;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:3,1:1,1 +chr14 52656711 . CA C 0 PASS DP=30;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,4:3,4 +chr14 52786059 . C CT 0 PASS DP=23;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:2,4:0,2 +chr14 54862379 . CT C 0 PASS DP=24;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:4,2:0,0 +chr14 56705573 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.0024876;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,13:8,11:4,2 +chr14 56935197 . TTCTTTTCTTTC T 0 PASS DP=58;GPV=1;SPV=0.0025247;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:4,6:15,10 +chr14 58962926 . C CTA 0 PASS DP=37;GPV=1;SPV=0.26049;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:12,2:9,1 +chr14 59175182 . TA T 0 PASS DP=57;GPV=1;SPV=0.0069576;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:11,4:9,5 +chr14 61746397 . T C 0 PASS DP=38;GPV=1;SPV=0.019737;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,3:2,5 +chr14 61938026 . A AACACACACACACACAC 0 PASS DP=27;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:4,6:2,2 +chr14 62908782 . AT A 0 PASS DP=19;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:4,2:1,2 +chr14 64428107 . T G 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,1:3,4 +chr14 64657457 . TG T 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,1:3,6 +chr14 64785351 . GAA G 0 PASS DP=39;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr14 65123077 . C CT 0 PASS DP=22;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,5:3,1 +chr14 65810255 . ATTTGGCTCCC A 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,3:6,4 +chr14 66154886 . G GATAGAT 0 PASS DP=46;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,4:6,3 +chr14 69102591 . G GACACACACACACACAC 0 PASS DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:3,3:1,3 +chr14 69776603 . A G 0 PASS DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,3:12,1 +chr14 70860105 . C T 0 PASS DP=37;GPV=1;SPV=0.018691;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,6:1,4:6,2 +chr14 71263275 . CT C 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,4:6,5 +chr14 71590042 . AAAATATAT A 0 PASS DP=29;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,3:4,2 +chr14 72990689 . CTT C 0 PASS DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,1:2,3 +chr14 73045353 . AT A 0 PASS DP=23;GPV=1;SPV=0.0049438;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:3,3:0,3 +chr14 76333418 . TATC T 0 PASS DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,5:0,1 +chr14 76333425 . T TG 0 PASS DP=35;GPV=1;SPV=0.00054683;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:8,5:0,3 +chr14 76799906 . GA G 0 PASS DP=26;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,7:4,1 +chr14 78550538 . AAAC A 0 PASS DP=55;GPV=1;SPV=1.0239e-06;SS=2;SSC=59;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:7,5:4,9 +chr14 79064707 . TATTTTTCATAATTACCC T 0 PASS DP=38;GPV=1;SPV=0.0092138;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,1:4,6 +chr14 79064727 . A G 0 PASS DP=38;GPV=1;SPV=0.0092138;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,2:4,5 +chr14 79064735 . A G 0 PASS DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,2:4,4 +chr14 79064737 . ATG A 0 PASS DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,2:4,5 +chr14 80996590 . G C 0 PASS DP=60;GPV=1;SPV=0.021791;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,2:12,2 +chr14 81265647 . G GTAATAATAATAATAATAATAA 0 PASS DP=39;GPV=1;SPV=0.008413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,7:3,5:1,2 +chr14 81593003 . TTCTC T 0 PASS DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2 +chr14 81599517 . G GTTTTTC 0 PASS DP=45;GPV=1;SPV=0.0001418;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,3:3,4 +chr14 81645964 . ATT A 0 PASS DP=19;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,6:1,1 +chr14 83882802 . C T 0 PASS DP=60;GPV=1;SPV=0.018159;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr14 84641209 . C T 0 PASS DP=54;GPV=1;SPV=0.0041266;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,11:8,2:8,9 +chr14 84814695 . C T 0 PASS DP=21;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:0,0:4,3 +chr14 84870460 . G GT 0 PASS DP=44;GPV=1;SPV=0.0036228;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:13,6:3,3 +chr14 85361378 . C T 0 PASS DP=53;GPV=1;SPV=3.2748e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,7:6,4 +chr14 87516712 . GC G 0 PASS DP=63;GPV=1;SPV=3.5057e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:13,8:5,10 +chr14 87606497 . G A 0 PASS DP=68;GPV=1;SPV=1.5334e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:17,21:11,8:6,13 +chr14 87781407 . C T 0 PASS DP=71;GPV=1;SPV=1.1265e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:7,8:9,9 +chr14 88755840 . T A 0 PASS DP=54;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,12:8,5:5,7 +chr14 90126531 . CTTG C 0 PASS DP=46;GPV=1;SPV=0.037638;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,4:8,5 +chr14 91318917 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,5:4,1 +chr14 91519138 . A T 0 PASS DP=43;GPV=1;SPV=0.083004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,2:5,1:0,1 +chr14 91915686 . C CA 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr14 92767689 . CT C 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,3:4,1 +chr14 93234186 . AT A 0 PASS DP=30;GPV=1;SPV=0.0017181;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,8:2,7:0,1 +chr14 93452375 . ATT A 0 PASS DP=42;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:9,2:4,2 +chr14 94540842 . T TTCTC 0 PASS DP=24;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:1,4:2,2 +chr14 94648586 . C CT 0 PASS DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,3:1,1 +chr14 94897018 . C A 0 PASS DP=57;GPV=1;SPV=0.0042869;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,6:12,3 +chr14 95610788 . AAG A 0 PASS DP=34;GPV=1;SPV=0.039737;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,1:3,4 +chr14 95766412 . A AT 0 PASS DP=39;GPV=1;SPV=0.0012644;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,4:5,3 +chr14 98014124 . CCTTTCTTTCT C 0 PASS DP=28;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:0,0:14,4 +chr14 98115803 . A AT 0 PASS DP=41;GPV=1;SPV=0.014742;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,5:7,2 +chr14 98155143 . TATAGAG T 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:3,7:8,2 +chr14 98234881 . TGATAGATAGATGATAGATA T 0 PASS DP=53;GPV=1;SPV=0.043209;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,8:9,4:9,4 +chr14 98234915 . TA T 0 PASS DP=51;GPV=1;SPV=0.0052029;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,12:8,7:7,5 +chr14 99410862 . G A 0 PASS DP=47;GPV=1;SPV=9.9525e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,5:4,7 +chr14 99826105 . AT A 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chr14 100198742 . C CA 0 PASS DP=32;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:3,4:4,1 +chr14 100931842 . TATATATA T 0 PASS DP=28;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:1,3:0,2:1,1 +chr14 104204478 . A G 0 PASS DP=24;GPV=1;SPV=0.0032734;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,7:1,2:2,5 +chr14 105654000 . G C 0 PASS DP=61;GPV=1;SPV=0.013714;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,5:8,4 +chr14 105736712 . C T 0 PASS DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:2,2:12,4 +chr14 105736981 . T C 0 PASS DP=49;GPV=1;SPV=0.037012;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:13,5:6,2 +chr14 105749983 . C T 0 PASS DP=80;GPV=1;SPV=0.047874;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:21,5:7,3 +chr14 105755579 . G A 0 PASS DP=79;GPV=1;SPV=0.047169;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,2:16,7 +chr14 106327993 . C G 0 PASS DP=183;GPV=1;SPV=0.0082929;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:72,17:39,13:33,4 +chr14 106351142 . CT C 0 PASS DP=173;GPV=1;SPV=0.013419;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:68,18:39,7:29,11 +chr15 18366043 . G A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,1:9,3 +chr15 18566117 . A G 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:27,4:0,0 +chr15 19222180 . G C 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr15 19563637 . T C 0 PASS DP=872;GPV=1;SPV=0.00095602;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:413:366,46:182,40:184,6 +chr15 19835775 . G A 0 PASS DP=25;GPV=1;SPV=2.6922e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,11:1,3:0,8 +chr15 19902524 . A C 0 PASS DP=105;GPV=1;SPV=0.038854;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,8:10,1:28,7 +chr15 19925830 . C A 0 PASS DP=162;GPV=1;SPV=0.022371;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:64,15:17,6:47,9 +chr15 20115657 . T G 0 PASS DP=75;GPV=1;SPV=0.03557;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,6:15,4 +chr15 20119707 . G A 0 PASS DP=82;GPV=1;SPV=0.035271;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:10,3:22,3 +chr15 20120551 . ACAAG A 0 PASS DP=100;GPV=1;SPV=0.03948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:29,5:12,1 +chr15 20256614 . C T 0 PASS DP=202;GPV=1;SPV=0.01383;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:30,12:44,8 +chr15 20272696 . C A 0 PASS DP=254;GPV=1;SPV=0.001875;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:100,25:58,10:42,15 +chr15 20284725 . T A 0 PASS DP=193;GPV=1;SPV=0.023429;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:73,18:35,13:38,5 +chr15 20289416 . T C 0 PASS DP=201;GPV=1;SPV=0.020621;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,17:35,8:42,9 +chr15 20290883 . G C 0 PASS DP=229;GPV=1;SPV=0.035787;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:92,21:39,7:53,14 +chr15 20291056 . A G 0 PASS DP=175;GPV=1;SPV=0.045569;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:71,15:38,7:33,8 +chr15 20295526 . C A 0 PASS DP=265;GPV=1;SPV=0.0046454;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:106,19:46,6:60,13 +chr15 20304167 . C A 0 PASS DP=314;GPV=1;SPV=0.047629;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:126,21:59,14:67,7 +chr15 20309845 . TGAG T 0 PASS DP=136;GPV=1;SPV=0.026602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:36,5:36,5 +chr15 20309922 . TGATGA T 0 PASS DP=142;GPV=1;SPV=0.020878;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:28,8:26,5 +chr15 20338110 . A G 0 PASS DP=173;GPV=1;SPV=0.046849;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:66,15:29,12:37,3 +chr15 20357686 . G A 0 PASS DP=281;GPV=1;SPV=0.036447;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:105,20:65,11:40,9 +chr15 20370348 . AATTGAGTTCTC A 0 PASS DP=182;GPV=1;SPV=0.036478;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:80,16:39,7:41,9 +chr15 20372213 . C T 0 PASS DP=184;GPV=1;SPV=0.019044;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:71,16:45,7:26,9 +chr15 20393186 . A AT 0 PASS DP=186;GPV=1;SPV=0.025654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:38,4:32,6 +chr15 20415832 . T C 0 PASS DP=190;GPV=1;SPV=0.0087716;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:64,16:28,8:36,8 +chr15 20555222 . GTATATGTGTAAATA G 0 PASS DP=84;GPV=1;SPV=0.029438;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:21,5:13,4 +chr15 20586743 . C CT 0 PASS DP=63;GPV=1;SPV=0.034134;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:9,6:13,4 +chr15 20644036 . A G 0 PASS DP=174;GPV=1;SPV=0.047122;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:73,14:42,8:31,6 +chr15 20665834 . C CAA 0 PASS DP=175;GPV=1;SPV=0.0028234;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:34,9:37,10 +chr15 20741316 . C CAAAAA 0 PASS DP=19;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr15 21248951 . A T 0 PASS DP=63;GPV=1;SPV=0.047338;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:3,4:22,2 +chr15 21278485 . A G 0 PASS DP=175;GPV=1;SPV=0.033668;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:69,17:38,10:31,7 +chr15 21285805 . C T 0 PASS DP=181;GPV=1;SPV=0.045959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:72,16:40,7:32,9 +chr15 21291652 . G A 0 PASS DP=170;GPV=1;SPV=0.0045101;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:62,21:27,9:35,12 +chr15 21465543 . A G 0 PASS DP=112;GPV=1;SPV=0.016976;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:29,7:18,3 +chr15 21516684 . GC G 0 PASS DP=78;GPV=1;SPV=0.031256;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:19,6:14,4 +chr15 21540209 . T TA 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr15 21577313 . G C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,2:5,2 +chr15 21620069 . A T 0 PASS DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,5:10,1 +chr15 21835845 . G A 0 PASS DP=36;GPV=1;SPV=0.0057417;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:6,7:1,1 +chr15 21944626 . G A 0 PASS DP=93;GPV=1;SPV=0.008578;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:15,6:20,7 +chr15 22286257 . G GTAGGAATTATGTATTCTGT 0 PASS DP=116;GPV=1;SPV=0.046919;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,8:25,6:24,2 +chr15 22361138 . G A 0 PASS DP=76;GPV=1;SPV=0.03461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,3:15,7 +chr15 22422114 . T G 0 PASS DP=144;GPV=1;SPV=0.047443;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:60,9:29,6:31,3 +chr15 22443264 . G C 0 PASS DP=65;GPV=1;SPV=0.047789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:8,3:18,3 +chr15 23196478 . G T 0 PASS DP=106;GPV=1;SPV=0.0029389;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:27,5:18,3 +chr15 23356879 . G A 0 PASS DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:14,5:2,1 +chr15 23440678 . ATCT A 0 PASS DP=55;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,2:6,7 +chr15 23487784 . A AAC 0 PASS DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:3,3:0,2 +chr15 23864016 . G A 0 PASS DP=55;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:15,5:12,1 +chr15 24264280 . C T 0 PASS DP=60;GPV=1;SPV=2.0129e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:9,10:4,3 +chr15 24509453 . C A 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,4:14,1 +chr15 25999667 . C T 0 PASS DP=22;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:0,2:4,2 +chr15 27138743 . A G 0 PASS DP=64;GPV=1;SPV=1.7114e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:3,9:15,11 +chr15 27918089 . AT A 0 PASS DP=33;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:5,3:5,3 +chr15 28377531 . C T 0 PASS DP=20;GPV=1;SPV=0.0081269;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,4:3,1 +chr15 28488115 . AAG A 0 PASS DP=46;GPV=1;SPV=0.14691;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,2:21,3 +chr15 28518992 . A G 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr15 28545571 . T TGG 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr15 28589129 . C G 0 PASS DP=69;GPV=1;SPV=0.040413;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:12,6:16,3 +chr15 28589899 . C A 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,4:12,2 +chr15 28598282 . A T 0 PASS DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr15 29294729 . G A 0 PASS DP=60;GPV=1;SPV=3.8821e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,4:7,9 +chr15 29527891 . G T 0 PASS DP=54;GPV=1;SPV=0.00022196;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:9,5:7,5 +chr15 29587138 . CGT C 0 PASS DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr15 30442318 . A T 0 PASS DP=80;GPV=1;SPV=0.013504;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:11,2:19,3 +chr15 30998088 . C CAAAAAAAA 0 PASS DP=37;GPV=1;SPV=0.0091688;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:1,7:2,1 +chr15 32562048 . CA C 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,6:4,3 +chr15 32848149 . C A 0 PASS DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,5:13,3 +chr15 33224691 . C T 0 PASS DP=46;GPV=1;SPV=0.047958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,4:8,2 +chr15 33317307 . T C 0 PASS DP=48;GPV=1;SPV=2.4108e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:3,9:4,5 +chr15 35397859 . T TTATA 0 PASS DP=39;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,5:8,2:8,3 +chr15 35727930 . G GCGTGCGCGCGCGCACACA 0 PASS DP=45;GPV=1;SPV=0.011637;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,8:9,6 +chr15 35971864 . G A 0 PASS DP=59;GPV=1;SPV=0.00047821;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,8:12,2 +chr15 36930202 . T TA 0 PASS DP=48;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:11,3:9,5 +chr15 37695262 . T TTC 0 PASS DP=30;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:5,2:1,2 +chr15 37893878 . G T 0 PASS DP=56;GPV=1;SPV=2.706e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:9,7:5,10 +chr15 38282343 . ATG A 0 PASS DP=47;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,4:5,1:7,3 +chr15 39744820 . C T 0 PASS DP=33;GPV=1;SPV=0.0059696;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,2:4,6 +chr15 40573020 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,3:2,1 +chr15 41960670 . A AT 0 PASS DP=29;GPV=1;SPV=0.0010995;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chr15 43117519 . C T 0 PASS DP=58;GPV=1;SPV=3.6255e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:5,5:5,8 +chr15 43628891 . C T 0 PASS DP=62;GPV=1;SPV=0.001514;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:8,11:8,2 +chr15 44962347 . A AT 0 PASS DP=41;GPV=1;SPV=0.15499;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:10,2:7,3 +chr15 47772357 . C CGT 0 PASS DP=33;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:1,3:3,2 +chr15 49616645 . A C 0 PASS DP=39;GPV=1;SPV=0.0023473;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,3:4,6 +chr15 50629859 . C CT 0 PASS DP=19;GPV=1;SPV=0.0012626;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,7:0,4:0,3 +chr15 50762735 . C CT 0 PASS DP=32;GPV=1;SPV=0.014912;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr15 53729496 . C A 0 PASS DP=46;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr15 55210195 . G GTATA 0 PASS DP=35;GPV=1;SPV=0.013455;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,1:4,4 +chr15 55210208 . C CAT 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr15 55262545 . G GA 0 PASS DP=26;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,3:0,3 +chr15 55822490 . ACT A 0 PASS DP=40;GPV=1;SPV=0.031374;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:9,4:5,3 +chr15 56484874 . T TG 0 PASS DP=53;GPV=1;SPV=0.0077143;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:8,4:11,2 +chr15 57123996 . TC T 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,1:6,3 +chr15 59592718 . GTTT G 0 PASS DP=23;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,3:3,1 +chr15 59658155 . CAA C 0 PASS DP=22;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:3,3:2,1 +chr15 59740539 . T C 0 PASS DP=49;GPV=1;SPV=0.048504;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3 +chr15 60037718 . G GACACAC 0 PASS DP=34;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,9:4,7:1,2 +chr15 60668964 . C A 0 PASS DP=51;GPV=1;SPV=0.022618;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,4:10,1 +chr15 61008651 . G A 0 PASS DP=64;GPV=1;SPV=4.363e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,6:9,7 +chr15 61778569 . AAAGGAAGGAAGG A 0 PASS DP=32;GPV=1;SPV=0.0017499;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,8:4,4:1,4 +chr15 62282875 . G A 0 PASS DP=61;GPV=1;SPV=7.0453e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:8,4:8,6 +chr15 63932164 . T TAA 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,3:6,2 +chr15 64002916 . CTGTG C 0 PASS DP=31;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,7:3,6:2,1 +chr15 65160621 . TCTCA T 0 PASS DP=31;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:2,3:8,5 +chr15 66596799 . C CT 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,2:4,2 +chr15 68235593 . T A 0 PASS DP=23;GPV=1;SPV=0.125;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:4,2:0,0 +chr15 68402842 . A G 0 PASS DP=57;GPV=1;SPV=2.1392e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,7:4,3 +chr15 69260252 . GT G 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr15 69810400 . AACACAC A 0 PASS DP=38;GPV=1;SPV=0.00036978;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:7,7:1,6 +chr15 69993318 . GAAAGAGAC G 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr15 70364401 . A AT 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chr15 72482839 . C CT 0 PASS DP=37;GPV=1;SPV=0.015907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:2,5:8,2 +chr15 72660853 . G A 0 PASS DP=20;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,4:0,1 +chr15 74303679 . C T 0 PASS DP=87;GPV=1;SPV=3.5745e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:19,9:11,4 +chr15 74939066 . C CAAAAAAAAA 0 PASS DP=32;GPV=1;SPV=0.036707;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,2:5,2 +chr15 75266350 . G A 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:0,0:19,4 +chr15 75376695 . A C 0 PASS DP=45;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,2:1,1:6,1 +chr15 75481742 . G T 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr15 75491402 . C CA 0 PASS DP=40;GPV=1;SPV=0.019042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:12,6:2,4 +chr15 75528695 . AT A 0 PASS DP=42;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,15:4,7:3,8 +chr15 75615594 . A AT 0 PASS DP=26;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,4:4,1 +chr15 75782577 . C T 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,2:10,2 +chr15 76249435 . A ATC 0 PASS DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,4:4,7 +chr15 77277556 . G A 0 PASS DP=66;GPV=1;SPV=1.8785e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:10,7:6,7 +chr15 77497684 . T A 0 PASS DP=36;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,7:1,4:0,3 +chr15 77528920 . G GT 0 PASS DP=54;GPV=1;SPV=0.007251;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,7:8,2 +chr15 78386955 . G GTTTTTT 0 PASS DP=38;GPV=1;SPV=0.0020026;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:7,9:3,3 +chr15 78877113 . ATTTT A 0 PASS DP=31;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:5,5:1,2 +chr15 79847669 . CA C 0 PASS DP=24;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:4,8:2,1 +chr15 80832324 . G C 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr15 81356253 . A G 0 PASS DP=55;GPV=1;SPV=1.7201e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:7,9:4,4 +chr15 81878296 . T TCTCTCTCTCTCC 0 PASS DP=21;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:1,1:2,4 +chr15 82383908 . T A 0 PASS DP=30;GPV=1;SPV=0.025565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,2:5,3 +chr15 82483047 . G C 0 PASS DP=41;GPV=1;SPV=0.018356;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,1:6,6 +chr15 82497785 . C CAA 0 PASS DP=43;GPV=1;SPV=0.0018936;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,6:4,5:3,1 +chr15 83393258 . CT C 0 PASS DP=50;GPV=1;SPV=0.014488;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:15,5:5,1 +chr15 84765535 . G GT 0 PASS DP=58;GPV=1;SPV=0.029874;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:6,4:11,1 +chr15 85251985 . CT C 0 PASS DP=45;GPV=1;SPV=0.031261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,3:7,3 +chr15 85252017 . G A 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,3:11,3 +chr15 85841979 . CT C 0 PASS DP=31;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:1,7:5,1 +chr15 85844597 . CAA C 0 PASS DP=24;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:2,3:3,3 +chr15 85989649 . C CA 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,5:7,1 +chr15 86553517 . C T 0 PASS DP=69;GPV=1;SPV=4.8252e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:12,6:9,11 +chr15 88474552 . T TC 0 PASS DP=61;GPV=1;SPV=0.03699;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:13,4:7,3 +chr15 88923804 . C CAAAAACA 0 PASS DP=54;GPV=1;SPV=0.042412;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:7,2:8,2 +chr15 88966785 . T TTGTTTTATTTTTTGTTTG 0 PASS DP=44;GPV=1;SPV=0.0045015;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,3:6,5 +chr15 89944102 . C CA 0 PASS DP=26;GPV=1;SPV=0.0026087;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,5:3,2 +chr15 90496306 . CTTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr15 91337841 . A ATTTTTTT 0 PASS DP=25;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:1,3:2,2 +chr15 91871753 . TG T 0 PASS DP=31;GPV=1;SPV=0.0067841;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:3,6:5,5 +chr15 93100836 . CTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=23;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:3,4:0,0 +chr15 93978594 . TTC T 0 PASS DP=26;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:0,3:7,4 +chr15 96477154 . T TATTATATATATATATATATATAA 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,2:7,3 +chr15 96554807 . C T 0 PASS DP=32;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,4:0,0:1,4 +chr15 98381629 . C CA 0 PASS DP=52;GPV=1;SPV=0.01454;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,2:9,4 +chr15 100467152 . G T 0 PASS DP=46;GPV=1;SPV=0.024548;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,1:6,4 +chr15 101860790 . G C 0 PASS DP=65;GPV=1;SPV=0.00032976;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:13,5:12,8 +chr15 101954372 . G A 0 PASS DP=63;GPV=1;SPV=0.0020073;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:4,5:13,8 +chr16 1250930 . C CAA 0 PASS DP=38;GPV=1;SPV=0.0074932;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,6:4,1 +chr16 4774608 . C T 0 PASS DP=36;GPV=1;SPV=0.013362;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,3:6,3 +chr16 6416298 . G A 0 PASS DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,2:6,4 +chr16 6664339 . G T 0 PASS DP=58;GPV=1;SPV=0.012279;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:14,6:13,2 +chr16 6798990 . G A 0 PASS DP=53;GPV=1;SPV=0.018514;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3 +chr16 7112644 . G C 0 PASS DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1 +chr16 7120821 . ATG A 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,2:12,2 +chr16 7203667 . A G 0 PASS DP=50;GPV=1;SPV=0.041061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:13,2:6,8 +chr16 9830480 . CA C 0 PASS DP=30;GPV=1;SPV=0.00088417;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr16 10380850 . CT C 0 PASS DP=55;GPV=1;SPV=0.036143;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,1:13,5 +chr16 10439049 . C CAA 0 PASS DP=29;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,5:2,3:2,2 +chr16 12062377 . A AAAAT 0 PASS DP=53;GPV=1;SPV=0.011613;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:5,7:12,3 +chr16 13622488 . CTG C 0 PASS DP=32;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:11,1:4,3 +chr16 14928709 . G C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr16 14982188 . T G 0 PASS DP=141;GPV=1;SPV=0.022391;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:38,3:22,4 +chr16 15103660 . C T 0 PASS DP=40;GPV=1;SPV=0.013238;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,1:5,7 +chr16 15202829 . G A 0 PASS DP=61;GPV=1;SPV=0.007006;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,4:12,5 +chr16 16134625 . C CT 0 PASS DP=19;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr16 16160628 . CAA C 0 PASS DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,4:2,1 +chr16 16444695 . C T 0 PASS DP=49;GPV=1;SPV=0.0033619;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,3:8,6 +chr16 16447974 . C T 0 PASS DP=63;GPV=1;SPV=0.046007;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1 +chr16 16550592 . A ATTT 0 PASS DP=48;GPV=1;SPV=0.0025265;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,2:7,7 +chr16 16720265 . T TTG 0 PASS DP=46;GPV=1;SPV=0.0062751;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,7:7,4 +chr16 16829613 . ATTTTTTT A 0 PASS DP=36;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,3:1,4 +chr16 17204966 . CAA C 0 PASS DP=37;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr16 17643997 . C A 0 PASS DP=41;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,4:3,2:6,2 +chr16 17916004 . C T 0 PASS DP=71;GPV=1;SPV=1.5771e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:9,9:13,5 +chr16 18181093 . G C 0 PASS DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,3:18,1 +chr16 18237898 . C G 0 PASS DP=70;GPV=1;SPV=0.037749;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:18,4:9,2 +chr16 18963513 . ATG A 0 PASS DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,5:10,2 +chr16 18963517 . T A 0 PASS DP=33;GPV=1;SPV=0.0072303;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,5:6,1 +chr16 20138748 . GTTTTTTT G 0 PASS DP=25;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:2,5:5,3 +chr16 21155621 . CAA C 0 PASS DP=32;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:3,4:3,2 +chr16 21675063 . GTCTT G 0 PASS DP=41;GPV=1;SPV=0.00047718;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,11:2,4:3,7 +chr16 22681401 . CA C 0 PASS DP=69;GPV=1;SPV=0.010119;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:16,4:11,2 +chr16 22824558 . A G 0 PASS DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:4,3:11,3 +chr16 23020660 . CTTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.0011576;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:3,13:0,7:3,6 +chr16 25746742 . G A 0 PASS DP=49;GPV=1;SPV=0.0010337;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,7:6,7 +chr16 25993949 . CGTGTGT C 0 PASS DP=31;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,6:4,1 +chr16 26005732 . GA G 0 PASS DP=51;GPV=1;SPV=0.00054483;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,8:7,4 +chr16 26238514 . T C 0 PASS DP=43;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,4:1,2:5,2 +chr16 26417291 . A C 0 PASS DP=33;GPV=1;SPV=0.0779;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:7,5:10,3 +chr16 26464372 . C T 0 PASS DP=53;GPV=1;SPV=0.00022959;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,2:8,6 +chr16 26653957 . C CTTTT 0 PASS DP=31;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:3,4:0,1 +chr16 27000580 . CTTTT C 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,3:2,1 +chr16 28361764 . G A 0 PASS DP=44;GPV=1;SPV=0.011858;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,15:0,4:4,11 +chr16 28424469 . G A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr16 28738180 . G A 0 PASS DP=58;GPV=1;SPV=0.016411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,6:5,2 +chr16 28739478 . C G 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,0:9,4 +chr16 29054144 . C A 0 PASS DP=70;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:20,3:6,3 +chr16 29445775 . G A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr16 30016057 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:2,1:5,1 +chr16 30267081 . T G 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr16 30466462 . T C 0 PASS DP=25;GPV=1;SPV=0.046407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,4:2,2 +chr16 30789230 . C CA 0 PASS DP=32;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,3:3,1 +chr16 30817175 . A AT 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,4:5,3 +chr16 31013407 . C T 0 PASS DP=31;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,2:0,1:1,1 +chr16 31149092 . C T 0 PASS DP=50;GPV=1;SPV=6.8881e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:5,15:3,11:2,4 +chr16 31247659 . C T 0 PASS DP=45;GPV=1;SPV=0.012394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:8,3:9,3 +chr16 31382130 . G A 0 PASS DP=56;GPV=1;SPV=3.1132e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,6:7,6 +chr16 31757826 . ATAGG A 0 PASS DP=44;GPV=1;SPV=0.0073773;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,2:7,7 +chr16 32096815 . T A 0 PASS DP=144;GPV=1;SPV=0.0057363;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:55,19:15,6:40,13 +chr16 32107256 . G A 0 PASS DP=181;GPV=1;SPV=0.0095044;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:75,14:17,10:58,4 +chr16 32107271 . C A 0 PASS DP=170;GPV=1;SPV=0.0068574;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:15,9:56,4 +chr16 32159292 . A G 0 PASS DP=29;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2 +chr16 32217275 . T G 0 PASS DP=46;GPV=1;SPV=0.0034214;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:11,7:3,3 +chr16 32258018 . A T 0 PASS DP=34;GPV=1;SPV=0.010674;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,1:8,3 +chr16 32298407 . A G 0 PASS DP=110;GPV=1;SPV=0.014476;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:23,11:19,5 +chr16 32328266 . C A 0 PASS DP=89;GPV=1;SPV=0.039273;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:19,5:14,6 +chr16 32812945 . C A 0 PASS DP=100;GPV=1;SPV=0.03082;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:24,3:15,3 +chr16 32829994 . C T 0 PASS DP=102;GPV=1;SPV=0.020896;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:24,2:21,6 +chr16 32830026 . G C 0 PASS DP=114;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:23,4:26,6 +chr16 32837836 . G C 0 PASS DP=217;GPV=1;SPV=0.0063265;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:95,23:68,20:27,3 +chr16 32891234 . CT C 0 PASS DP=40;GPV=1;SPV=0.0032243;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr16 33026241 . C T 0 PASS DP=165;GPV=1;SPV=0.038966;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:65,10:43,8:22,2 +chr16 33029546 . G A 0 PASS DP=123;GPV=1;SPV=0.0042381;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:18,2:27,4 +chr16 33581695 . C CT 0 PASS DP=62;GPV=1;SPV=0.040599;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,4:10,5 +chr16 33591570 . C T 0 PASS DP=97;GPV=1;SPV=0.012155;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:12,6:21,6 +chr16 33728041 . A ATTAAT 0 PASS DP=71;GPV=1;SPV=0.020116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:12,8:14,1 +chr16 34586236 . T C 0 PASS DP=1574;GPV=1;SPV=0.018905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:794:688,106:55,9:633,97 +chr16 34591720 . T TC 0 PASS DP=868;GPV=1;SPV=0.017863;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:408:121,24:64,12:57,12 +chr16 35979167 . A G 0 PASS DP=52;GPV=1;SPV=1.9714e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:4,5:5,11 +chr16 36241585 . C T 0 PASS DP=68;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:13,9:10,5 +chr16 36515521 . G C 0 PASS DP=44;GPV=1;SPV=0.012544;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:15,5:3,2 +chr16 36671635 . A G 0 PASS DP=19;GPV=1;SPV=0.11538;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:6,4:0,0 +chr16 37862493 . T A 0 PASS DP=66;GPV=1;SPV=0.0058227;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:9,10:11,2 +chr16 38129102 . T A 0 PASS DP=87;GPV=1;SPV=0.041058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:25,3:11,1 +chr16 46456668 . C A 0 PASS DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,3:8,2 +chr16 46468062 . T G 0 PASS DP=63;GPV=1;SPV=3.5767e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:9,9:6,4 +chr16 48316323 . C CTT 0 PASS DP=23;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:4,5:2,1 +chr16 48527040 . A G 0 PASS DP=66;GPV=1;SPV=0.035909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,4:17,2 +chr16 48579679 . C CA 0 PASS DP=48;GPV=1;SPV=0.015379;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,4:8,1 +chr16 48927307 . G T 0 PASS DP=60;GPV=1;SPV=0.00039851;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,4:12,6 +chr16 49688095 . A G 0 PASS DP=33;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:0,1:1,1 +chr16 51046768 . CAA C 0 PASS DP=21;GPV=1;SPV=0.002838;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,6:2,1 +chr16 52105557 . A C 0 PASS DP=62;GPV=1;SPV=0.00065661;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:13,1:6,7 +chr16 54410785 . T C 0 PASS DP=42;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,1:0,1 +chr16 54833298 . G GACACACACAC 0 PASS DP=26;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,6:0,3:0,3 +chr16 55426518 . G GCTCTCTCT 0 PASS DP=37;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:6,5:3,1 +chr16 57362879 . C CA 0 PASS DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:10,2:16,3 +chr16 57877100 . T TA 0 PASS DP=24;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1 +chr16 59738855 . C CA 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,3:4,1 +chr16 60446188 . CAA C 0 PASS DP=33;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr16 60506800 . A T 0 PASS DP=77;GPV=1;SPV=0.0052479;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:15,5:16,2 +chr16 60819181 . C A 0 PASS DP=58;GPV=1;SPV=0.022389;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,2:14,4 +chr16 60866253 . T TA 0 PASS DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,6:6,1 +chr16 63238833 . AAAGG A 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr16 63342623 . C T 0 PASS DP=50;GPV=1;SPV=3.4337e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,7:4,3 +chr16 63831399 . C A 0 PASS DP=33;GPV=1;SPV=0.014934;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,4:6,3 +chr16 64104330 . T C 0 PASS DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr16 64721892 . T C 0 PASS DP=58;GPV=1;SPV=0.00016168;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,5:11,5 +chr16 65555993 . G C 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr16 65687577 . C T 0 PASS DP=62;GPV=1;SPV=1.1154e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,18:10,9:3,9 +chr16 68283590 . AAG A 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,3:17,1 +chr16 68735645 . A T 0 PASS DP=19;GPV=1;SPV=0.06993;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:1,1:2,2 +chr16 68811396 . CA C 0 PASS DP=34;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,4:3,2 +chr16 69005788 . CA C 0 PASS DP=33;GPV=1;SPV=0.0027337;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:8,6:2,5 +chr16 70120931 . CTT C 0 PASS DP=28;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:0,2:4,2 +chr16 70174691 . G C 0 PASS DP=93;GPV=1;SPV=0.046823;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:16,7:18,3 +chr16 71736551 . ATTATTTAT A 0 PASS DP=33;GPV=1;SPV=0.037055;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,3:6,2 +chr16 72554038 . C CA 0 PASS DP=30;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,3:6,2 +chr16 72822795 . GT G 0 PASS DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:2,7:2,2 +chr16 73233108 . C CA 0 PASS DP=34;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,10:2,8:4,2 +chr16 73890254 . A C 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chr16 74395530 . CT C 0 PASS DP=60;GPV=1;SPV=0.022661;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:13,6:8,1 +chr16 74838044 . ATATATATG A 0 PASS DP=37;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,4:2,4 +chr16 75050776 . C T 0 PASS DP=30;GPV=1;SPV=0.00022655;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:1,3:5,10 +chr16 75354641 . A C 0 PASS DP=74;GPV=1;SPV=1.7137e-11;SS=2;SSC=107;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:11,25:7,12:4,13 +chr16 76589820 . C T 0 PASS DP=42;GPV=1;SPV=0.00037668;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,8:7,1 +chr16 77100673 . T A 0 PASS DP=56;GPV=1;SPV=0.13182;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:15,2:11,1 +chr16 77153592 . C A 0 PASS DP=63;GPV=1;SPV=0.001026;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:13,7:11,3 +chr16 77420002 . T TAAAAA 0 PASS DP=27;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:3,2:8,3 +chr16 78301290 . T C 0 PASS DP=62;GPV=1;SPV=2.6735e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,8:11,8 +chr16 79655414 . T A 0 PASS DP=38;GPV=1;SPV=0.015417;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:1,3:8,1 +chr16 79995164 . C CT 0 PASS DP=29;GPV=1;SPV=0.0024526;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,7:2,4:2,3 +chr16 81191374 . A ATT 0 PASS DP=42;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:1,4:11,4 +chr16 81414860 . A AGTGTGT 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chr16 81568039 . G GTGTGT 0 PASS DP=29;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:3,5:0,2 +chr16 82899775 . C T 0 PASS DP=63;GPV=1;SPV=0.087902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,1:16,3 +chr16 83007824 . C CAA 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,3:6,2 +chr16 83971093 . C CA 0 PASS DP=43;GPV=1;SPV=0.027339;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:8,2:6,2 +chr16 84697678 . TATATATATATATATATATATATATATATATG T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr16 84787898 . T TA 0 PASS DP=38;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:9,7:4,1 +chr16 85100004 . C A 0 PASS DP=53;GPV=1;SPV=0.0045922;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:11,7:6,7 +chr16 87187298 . G T 0 PASS DP=31;GPV=1;SPV=0.091248;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,1:6,4 +chr16 88115662 . C T 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1 +chr16 88314100 . C G 0 PASS DP=43;GPV=1;SPV=0.0054356;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,7:5,1 +chr16 88521081 . GATTA G 0 PASS DP=28;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:4,2:0,0 +chr16 88521088 . T A 0 PASS DP=28;GPV=1;SPV=0.10989;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,2:3,2:0,0 +chr16 88677238 . A C 0 PASS DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,3:9,5 +chr16 90136987 . T A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr16 90209815 . T C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,1:3,3 +chr17 321603 . C T 0 PASS DP=58;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,5:15,3:9,2 +chr17 548434 . A T 0 PASS DP=57;GPV=1;SPV=0.032347;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,2:10,6 +chr17 643543 . A C 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3 +chr17 662873 . C G 0 PASS DP=39;GPV=1;SPV=0.013487;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:7,5:3,1 +chr17 942786 . T C 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chr17 1164351 . T C 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,4:2,3 +chr17 1328160 . T C 0 PASS DP=37;GPV=1;SPV=0.011294;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,5:7,2 +chr17 1328161 . G C 0 PASS DP=39;GPV=1;SPV=0.011088;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,5:8,2 +chr17 1656561 . T C 0 PASS DP=51;GPV=1;SPV=0.0092196;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,7:13,2 +chr17 2090184 . A C 0 PASS DP=41;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,2:1,1:2,1 +chr17 2487323 . C T 0 PASS DP=60;GPV=1;SPV=0.00056474;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,6:12,5 +chr17 3327672 . C G 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,4:5,2 +chr17 3645859 . CA C 0 PASS DP=42;GPV=1;SPV=0.014023;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,7:4,3 +chr17 3756220 . TG T 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:1,3:5,2 +chr17 4394807 . C T 0 PASS DP=34;GPV=1;SPV=0.13043;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:1,1:6,1 +chr17 4570600 . G C 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,2:3,3 +chr17 4578810 . C T 0 PASS DP=68;GPV=1;SPV=7.3211e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,6:11,9 +chr17 5240636 . C T 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr17 5420125 . G T 0 PASS DP=61;GPV=1;SPV=6.1831e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:12,10:8,4 +chr17 5552084 . CTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:1,2:2,2 +chr17 6662001 . ATATTT A 0 PASS DP=45;GPV=1;SPV=0.034418;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:2,3:10,3 +chr17 9106467 . C T 0 PASS DP=30;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,5:2,2:2,3 +chr17 9195209 . C T 0 PASS DP=32;GPV=1;SPV=0.0099416;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:0,3:9,2 +chr17 10153519 . CA C 0 PASS DP=22;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:4,4:1,2 +chr17 10323784 . A G 0 PASS DP=18;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:1,1:3,1 +chr17 11366816 . G T 0 PASS DP=65;GPV=1;SPV=0.010971;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,3:14,3 +chr17 11422051 . C T 0 PASS DP=64;GPV=1;SPV=3.7248e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,20:11,12:5,8 +chr17 11762306 . G T 0 PASS DP=67;GPV=1;SPV=0.019518;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:18,3:12,3 +chr17 11845265 . TTG T 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,2:6,4 +chr17 14375018 . T A 0 PASS DP=53;GPV=1;SPV=0.0031185;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,4:9,3 +chr17 16328600 . ATATATATATAT A 0 PASS DP=20;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,2:0,0:0,2 +chr17 16422760 . G A 0 PASS DP=72;GPV=1;SPV=0.0017851;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:9,3:15,4 +chr17 17708429 . T C 0 PASS DP=46;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,4:7,3:7,1 +chr17 18492068 . C T 0 PASS DP=23;GPV=1;SPV=0.0017458;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:2,4:0,2 +chr17 18862802 . T C 0 PASS DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,2:6,4 +chr17 19565577 . CT C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr17 20330767 . A G 0 PASS DP=83;GPV=1;SPV=0.039686;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:8,1:21,4 +chr17 20470693 . T A 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr17 20815219 . A ATT 0 PASS DP=34;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:3,5:1,3 +chr17 21048746 . C T 0 PASS DP=46;GPV=1;SPV=0.00041746;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:1,10:9,5 +chr17 21648749 . A AT 0 PASS DP=98;GPV=1;SPV=0.0028141;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:16,8:15,6 +chr17 21712856 . C A 0 PASS DP=67;GPV=1;SPV=0.04855;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,9:13,1 +chr17 21723268 . C A 0 PASS DP=87;GPV=1;SPV=0.019206;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:23,8:14,3 +chr17 21740034 . A G 0 PASS DP=132;GPV=1;SPV=1.3924e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:57,18:25,11:32,7 +chr17 22198061 . AT A 0 PASS DP=52;GPV=1;SPV=0.00026518;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:10,8:5,3 +chr17 22217042 . AAACAAG A 0 PASS DP=44;GPV=1;SPV=0.0204;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:12,6:5,4 +chr17 22384676 . G T 0 PASS DP=155;GPV=1;SPV=0.043277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:55,14:8,1:47,13 +chr17 22391591 . C G 0 PASS DP=56;GPV=1;SPV=0.024109;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,3:6,1 +chr17 26717800 . C G 0 PASS DP=555;GPV=1;SPV=0.033702;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:234,27:109,14:125,13 +chr17 26722452 . G A 0 PASS DP=180;GPV=1;SPV=0.011266;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:73,12:45,8:28,4 +chr17 26763941 . C T 0 PASS DP=94;GPV=1;SPV=0.015084;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,8:21,4:17,4 +chr17 26767603 . A C 0 PASS DP=218;GPV=1;SPV=0.020548;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:88,18:56,14:32,4 +chr17 26951309 . T C 0 PASS DP=229;GPV=1;SPV=0.014823;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:98,13:63,11:35,2 +chr17 26955229 . G A 0 PASS DP=186;GPV=1;SPV=0.042553;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:72,17:28,4:44,13 +chr17 26959916 . T G 0 PASS DP=156;GPV=1;SPV=0.03106;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:65,8:31,5:34,3 +chr17 26983562 . G C 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2 +chr17 27162354 . A G 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr17 27470016 . G A 0 PASS DP=50;GPV=1;SPV=0.046386;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,4:12,1 +chr17 28118620 . C A 0 PASS DP=65;GPV=1;SPV=9.4646e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:5,8:9,10 +chr17 28225289 . T TAA 0 PASS DP=44;GPV=1;SPV=0.069102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:13,5:5,1 +chr17 29970637 . G GACACACAC 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,3:7,2 +chr17 30015759 . CT C 0 PASS DP=36;GPV=1;SPV=0.025944;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,6:4,1 +chr17 31675970 . G C 0 PASS DP=32;GPV=1;SPV=0.018499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,2:5,3 +chr17 31675974 . G A 0 PASS DP=27;GPV=1;SPV=0.0086957;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,3:4,3 +chr17 32248071 . CT C 0 PASS DP=26;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,1:1,4 +chr17 33464540 . C CTCTT 0 PASS DP=31;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:3,1:7,3 +chr17 33634710 . CTT C 0 PASS DP=43;GPV=1;SPV=0.0035698;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,7:2,6:4,1 +chr17 34120743 . T C 0 PASS DP=30;GPV=1;SPV=0.015182;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:5,1:0,4 +chr17 35437787 . TGCTTGCA T 0 PASS DP=45;GPV=1;SPV=0.00068054;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,14:6,9:4,5 +chr17 36185264 . A G 0 PASS DP=202;GPV=1;SPV=0.0029013;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:82,18:41,8:41,10 +chr17 36238037 . CA C 0 PASS DP=122;GPV=1;SPV=0.047806;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:29,7:21,4 +chr17 36887234 . G A 0 PASS DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:6,6:12,6 +chr17 36912504 . A G 0 PASS DP=42;GPV=1;SPV=0.053471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2 +chr17 37022153 . A T 0 PASS DP=60;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,6:7,2:8,4 +chr17 37766921 . TCACACACACACACA T 0 PASS DP=34;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:3,7:1,2 +chr17 37766937 . A T 0 PASS DP=33;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr17 38258518 . A T 0 PASS DP=61;GPV=1;SPV=0.024863;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,8:11,2 +chr17 38832576 . C CT 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,4:4,5 +chr17 40275261 . AC A 0 PASS DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:1,4:6,2 +chr17 40837042 . GT G 0 PASS DP=20;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,7:1,5:1,2 +chr17 43569855 . T TTTTCTTTCTTTCTTTCTTTC 0 PASS DP=30;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:0,2:7,2 +chr17 45609919 . G A 0 PASS DP=85;GPV=1;SPV=0.04235;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:10,3:18,6 +chr17 45625576 . T TC 0 PASS DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chr17 46495135 . A G 0 PASS DP=72;GPV=1;SPV=0.04252;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:7,1:17,7 +chr17 46844305 . C CTT 0 PASS DP=22;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:1,3:0,2 +chr17 49173863 . TGAGCTTTATG T 0 PASS DP=38;GPV=1;SPV=0.0011868;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:5,5:2,6 +chr17 49232226 . G GA 0 PASS DP=20;GPV=1;SPV=0.039683;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,3:0,1 +chr17 50030081 . C CT 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,4:3,1 +chr17 50083723 . C CA 0 PASS DP=26;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,2:4,4 +chr17 50360571 . C CT 0 PASS DP=45;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,10:9,9:4,1 +chr17 50524739 . A T 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr17 51080260 . G C 0 PASS DP=39;GPV=1;SPV=0.00020919;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,2:4,6 +chr17 52816391 . C T 0 PASS DP=35;GPV=1;SPV=0.020833;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,6:8,2 +chr17 53327791 . C A 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,1:5,4 +chr17 54246168 . G A 0 PASS DP=53;GPV=1;SPV=0.0062691;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:3,5:10,5 +chr17 54246177 . T TGTG 0 PASS DP=51;GPV=1;SPV=0.0033479;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:3,4:8,6 +chr17 54401303 . G A 0 PASS DP=65;GPV=1;SPV=0.0010255;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,4:10,6 +chr17 54576215 . T TTGTG 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,2:8,3 +chr17 54576700 . CT C 0 PASS DP=44;GPV=1;SPV=0.0035488;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:7,6:7,6 +chr17 54891017 . A AACACACACACACAC 0 PASS DP=40;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,10:3,6:0,4 +chr17 58026563 . T C 0 PASS DP=60;GPV=1;SPV=1.4524e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:4,7:7,8 +chr17 58710500 . C CA 0 PASS DP=39;GPV=1;SPV=0.049766;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1 +chr17 59250613 . C CAA 0 PASS DP=39;GPV=1;SPV=0.019548;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,7:5,4:5,3 +chr17 60019439 . G A 0 PASS DP=89;GPV=1;SPV=0.013871;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:14,2:20,3 +chr17 60244029 . G GT 0 PASS DP=20;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:2,1:3,1 +chr17 61535757 . C CTT 0 PASS DP=29;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:1,8:2,1 +chr17 61577447 . T C 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,2:4,5 +chr17 62039586 . GA G 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:6,6:1,1 +chr17 62342287 . GT G 0 PASS DP=42;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:7,5:4,1 +chr17 65341016 . A AAAAAACAAAAAC 0 PASS DP=44;GPV=1;SPV=0.031815;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:12,5:4,2 +chr17 66407338 . G A 0 PASS DP=51;GPV=1;SPV=0.00088893;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,6:12,6 +chr17 67329141 . AT A 0 PASS DP=25;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chr17 68379421 . A ATT 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr17 68499368 . A AAG 0 PASS DP=28;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,9:0,7:2,2 +chr17 71468127 . G A 0 PASS DP=58;GPV=1;SPV=0.0067708;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:14,5:9,2 +chr17 71608301 . C CTATA 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,1:2,3 +chr17 77048303 . A T 0 PASS DP=46;GPV=1;SPV=0.0014835;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:4,2:10,6 +chr17 77647415 . T C 0 PASS DP=45;GPV=1;SPV=0.020538;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr17 79463487 . G A 0 PASS DP=20;GPV=1;SPV=0.042892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:3,1:1,2 +chr17 79463493 . G GCCACCT 0 PASS DP=20;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:4,1:1,1 +chr17 80416714 . T C 0 PASS DP=28;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:0,1:7,1 +chr17 82122432 . T G 0 PASS DP=63;GPV=1;SPV=0.030827;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4 +chr17 82212393 . C T 0 PASS DP=35;GPV=1;SPV=0.036419;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:6,3:6,2 +chr18 113178 . A AAAT 0 PASS DP=24;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:4,5:1,1 +chr18 178004 . G GTGTT 0 PASS DP=60;GPV=1;SPV=0.00071601;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:7,9:7,5 +chr18 700916 . A G 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1 +chr18 889514 . CAAAA C 0 PASS DP=35;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:7,5:3,4 +chr18 915781 . CT C 0 PASS DP=27;GPV=1;SPV=0.0072464;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:6,4:2,3 +chr18 2384404 . G A 0 PASS DP=28;GPV=1;SPV=0.016425;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:0,5:7,8 +chr18 2621263 . G A 0 PASS DP=33;GPV=1;SPV=0.027438;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,4:4,1 +chr18 2621264 . A AG 0 PASS DP=34;GPV=1;SPV=0.023764;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,4:4,1 +chr18 3343041 . G A 0 PASS DP=43;GPV=1;SPV=0.16126;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,5:9,4:4,1 +chr18 3923133 . C CA 0 PASS DP=29;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:6,7:2,1 +chr18 4066348 . A AAAAT 0 PASS DP=52;GPV=1;SPV=0.0001352;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:5,4:8,5 +chr18 4548393 . CT C 0 PASS DP=23;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,3:2,2 +chr18 4781352 . CA C 0 PASS DP=52;GPV=1;SPV=0.0019836;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,11:6,9:3,2 +chr18 5324617 . A ACAACAT 0 PASS DP=32;GPV=1;SPV=0.006391;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,3:5,2 +chr18 5949713 . G A 0 PASS DP=47;GPV=1;SPV=0.02027;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,3:9,4 +chr18 6446370 . GAC G 0 PASS DP=34;GPV=1;SPV=0.021903;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,5:4,1 +chr18 7236433 . C CT 0 PASS DP=34;GPV=1;SPV=0.0036999;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,6:1,1 +chr18 8725790 . C CT 0 PASS DP=28;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,5:0,1:0,4 +chr18 8838752 . C T 0 PASS DP=69;GPV=1;SPV=2.8089e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,20:7,8:8,12 +chr18 9480414 . A AT 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,5:7,4 +chr18 10604917 . A G 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr18 10757193 . G A 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:4,8:2,2 +chr18 11646123 . T C 0 PASS DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:21,3:10,4 +chr18 11646124 . G A 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:21,3:12,3 +chr18 11813263 . G A 0 PASS DP=29;GPV=1;SPV=0.030289;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,2:5,3 +chr18 12214347 . G A 0 PASS DP=65;GPV=1;SPV=0.022419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,1:9,7 +chr18 13591434 . G C 0 PASS DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:13,1:15,3 +chr18 13904655 . A AACAGGT 0 PASS DP=48;GPV=1;SPV=0.023962;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,3:6,4 +chr18 13904663 . C CCAAAACAGTAA 0 PASS DP=54;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:11,4:8,5 +chr18 14547291 . C T 0 PASS DP=72;GPV=1;SPV=0.038345;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:10,2:18,4 +chr18 15174876 . A T 0 PASS DP=78;GPV=1;SPV=0.057873;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:14,2:26,3 +chr18 15371534 . G A 0 PASS DP=67;GPV=1;SPV=9.1439e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,5:13,7 +chr18 15406854 . C A 0 PASS DP=166;GPV=1;SPV=0.023607;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:72,11:50,6:22,5 +chr18 15406877 . T C 0 PASS DP=197;GPV=1;SPV=0.03962;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:93,11:67,5:26,6 +chr18 15410625 . C T 0 PASS DP=139;GPV=1;SPV=0.0062788;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:43,15:8,3:35,12 +chr18 15467492 . C T 0 PASS DP=137;GPV=1;SPV=0.0066392;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:21,2:35,9 +chr18 15482975 . T A 0 PASS DP=88;GPV=1;SPV=0.043831;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,6:7,2:26,4 +chr18 15492794 . T G 0 PASS DP=150;GPV=1;SPV=0.049961;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:64,11:57,9:7,2 +chr18 15492959 . C G 0 PASS DP=253;GPV=1;SPV=0.017499;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:123,18:68,8:55,10 +chr18 15513931 . A T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr18 15534382 . G C 0 PASS DP=61;GPV=1;SPV=0.0053311;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:2,4:19,2 +chr18 15551751 . T C 0 PASS DP=230;GPV=1;SPV=0.0022736;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:95,23:59,13:36,10 +chr18 15551816 . C T 0 PASS DP=378;GPV=1;SPV=0.049575;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:155,25:58,21:97,4 +chr18 15585070 . G C 0 PASS DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,3:8,2 +chr18 15625476 . T A 0 PASS DP=48;GPV=1;SPV=0.045508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:0,0:19,4 +chr18 15654737 . T G 0 PASS DP=72;GPV=1;SPV=0.04252;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:8,7:16,1 +chr18 15776941 . G A 0 PASS DP=104;GPV=1;SPV=0.035565;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:21,9:22,4 +chr18 15872075 . T G 0 PASS DP=117;GPV=1;SPV=0.018432;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:50,10:10,1:40,9 +chr18 15968013 . A G 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr18 16465131 . C A 0 PASS DP=142;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:39,7:9,2 +chr18 16524963 . C G 0 PASS DP=114;GPV=1;SPV=0.040632;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:18,7:25,5 +chr18 16645020 . C T 0 PASS DP=194;GPV=1;SPV=0.022836;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:71,14:32,9:39,5 +chr18 17355884 . A T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr18 18949466 . G A 0 PASS DP=77;GPV=1;SPV=0.060779;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:23,3:12,1 +chr18 19117525 . C T 0 PASS DP=102;GPV=1;SPV=0.032677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:11,8:19,1 +chr18 19257442 . G A 0 PASS DP=26;GPV=1;SPV=0.0019155;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chr18 19288468 . T A 0 PASS DP=188;GPV=1;SPV=0.040476;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:84,16:48,7:36,9 +chr18 19397234 . A T 0 PASS DP=77;GPV=1;SPV=0.043004;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:3,2:31,5 +chr18 20810329 . C T 0 PASS DP=29;GPV=1;SPV=0.035721;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr18 21030198 . T C 0 PASS DP=61;GPV=1;SPV=2.199e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:10,7:5,8 +chr18 21613854 . C CA 0 PASS DP=34;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:5,5:5,2 +chr18 21983286 . C CA 0 PASS DP=37;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:4,3:7,5 +chr18 22232356 . C A 0 PASS DP=77;GPV=1;SPV=0.054545;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,2:14,2 +chr18 22243972 . G A 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:5,4:13,8 +chr18 23616122 . CCGTA C 0 PASS DP=107;GPV=1;SPV=0.022833;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:23,7:20,4 +chr18 24748641 . TTTCC T 0 PASS DP=29;GPV=1;SPV=0.0091533;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:0,1:6,5 +chr18 26007125 . A ATTTTGCTTATACTTCTCAGT 0 PASS DP=43;GPV=1;SPV=0.026903;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,5:9,2 +chr18 26256819 . C CT 0 PASS DP=41;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:2,13:0,5:2,8 +chr18 26365002 . CT C 0 PASS DP=24;GPV=1;SPV=0.0060573;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:3,6:1,1 +chr18 27155104 . AAAG A 0 PASS DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,3:6,3 +chr18 27219843 . CATATATAT C 0 PASS DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,2:1,1:3,1 +chr18 27860667 . CTT C 0 PASS DP=26;GPV=1;SPV=0.0045249;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:1,3:2,3 +chr18 28271054 . G GTTATTGTATTC 0 PASS DP=42;GPV=1;SPV=0.017056;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:3,2:7,5 +chr18 28271056 . C A 0 PASS DP=40;GPV=1;SPV=0.018018;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:3,1:6,6 +chr18 29512143 . ATATT A 0 PASS DP=63;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,5:10,4 +chr18 29512159 . T TATTA 0 PASS DP=66;GPV=1;SPV=0.021619;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,5:11,3 +chr18 29910419 . A G 0 PASS DP=66;GPV=1;SPV=6.1797e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,9:9,3 +chr18 30478041 . AGTG A 0 PASS DP=56;GPV=1;SPV=0.019244;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3 +chr18 30854728 . C CA 0 PASS DP=51;GPV=1;SPV=0.0029895;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2 +chr18 31290492 . G T 0 PASS DP=45;GPV=1;SPV=0.011302;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,6:10,3 +chr18 32153722 . CA C 0 PASS DP=23;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,4:0,0 +chr18 32904389 . G C 0 PASS DP=60;GPV=1;SPV=0.017995;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:7,1:16,4 +chr18 33306606 . T TTA 0 PASS DP=51;GPV=1;SPV=0.010488;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:11,4:6,8 +chr18 33926231 . G A 0 PASS DP=53;GPV=1;SPV=5.0681e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:6,3:5,9 +chr18 36132817 . C CT 0 PASS DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,2:7,2 +chr18 36264616 . C T 0 PASS DP=49;GPV=1;SPV=0.00064637;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5 +chr18 36270711 . C CA 0 PASS DP=26;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1 +chr18 37709472 . T A 0 PASS DP=27;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,1:4,3 +chr18 39135912 . C T 0 PASS DP=67;GPV=1;SPV=3.6575e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:11,10:10,3 +chr18 39324724 . C CAT 0 PASS DP=40;GPV=1;SPV=0.0069323;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,8:2,4:2,4 +chr18 39379704 . A T 0 PASS DP=60;GPV=1;SPV=0.046464;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3 +chr18 40557893 . CTTT C 0 PASS DP=17;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:3,1:1,1 +chr18 40844667 . G T 0 PASS DP=70;GPV=1;SPV=0.079534;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:28,2:10,3 +chr18 41863748 . T TGA 0 PASS DP=23;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,6:1,5:0,1 +chr18 43949741 . C A 0 PASS DP=55;GPV=1;SPV=0.00028843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,4:7,6 +chr18 43970339 . G GT 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2 +chr18 44214083 . G C 0 PASS DP=49;GPV=1;SPV=0.0074932;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,7:9,5:3,2 +chr18 45422642 . G T 0 PASS DP=49;GPV=1;SPV=0.00057266;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,2:5,4 +chr18 47076820 . T C 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,2:11,2 +chr18 47419530 . T TA 0 PASS DP=39;GPV=1;SPV=0.0005667;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:4,5:6,4 +chr18 48510744 . C CAT 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr18 49292592 . GAAAAAAAAAAAAAA G 0 PASS DP=17;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr18 49463562 . CA C 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr18 49508668 . C CAAAA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:10,4:0,0 +chr18 49592974 . C T 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,1:3,5 +chr18 50180234 . C T 0 PASS DP=68;GPV=1;SPV=0.00042047;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:10,4:10,4 +chr18 50361668 . T C 0 PASS DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,1:7,6 +chr18 50531157 . G A 0 PASS DP=52;GPV=1;SPV=0.00012397;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:5,3:9,7 +chr18 50552615 . T G 0 PASS DP=57;GPV=1;SPV=0.00029607;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,3:9,8 +chr18 51296831 . C T 0 PASS DP=60;GPV=1;SPV=0.0016775;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:15,5:6,3 +chr18 52012995 . A ATGTGTGTGTGTGTGTG 0 PASS DP=34;GPV=1;SPV=0.011037;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:3,4:2,2 +chr18 52753534 . G A 0 PASS DP=78;GPV=1;SPV=0.0011694;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,4:14,6 +chr18 53699817 . C T 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2 +chr18 57035014 . C T 0 PASS DP=61;GPV=1;SPV=5.8903e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,3:11,7 +chr18 57549425 . A T 0 PASS DP=62;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:15,6:7,3 +chr18 58920735 . CGTGT C 0 PASS DP=27;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,4:2,2 +chr18 59390178 . A ATATATTATATTATAT 0 PASS DP=25;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:5,2:1,2 +chr18 59882953 . C CATTTATTT 0 PASS DP=47;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,8:3,4:10,4 +chr18 62581837 . T C 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:10,3:4,1 +chr18 62924678 . A G 0 PASS DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr18 63839578 . AT A 0 PASS DP=37;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,7:4,2:7,5 +chr18 64680435 . A C 0 PASS DP=48;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,3:2,2:2,1 +chr18 64709340 . T C 0 PASS DP=41;GPV=1;SPV=0.10773;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,3:13,2 +chr18 65283293 . A G 0 PASS DP=51;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,5:1,1:6,4 +chr18 65573943 . G A 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1 +chr18 67365587 . C CAA 0 PASS DP=41;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,5:6,4:2,1 +chr18 67990258 . C G 0 PASS DP=57;GPV=1;SPV=0.009946;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,3:10,4 +chr18 68096305 . T TTTTC 0 PASS DP=39;GPV=1;SPV=0.00026221;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,12:3,4:4,8 +chr18 69606759 . T A 0 PASS DP=43;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:4,1:1,1 +chr18 70391030 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,1:3,3 +chr18 71415223 . A AT 0 PASS DP=36;GPV=1;SPV=0.0060362;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,5:5,2 +chr18 71568521 . T C 0 PASS DP=46;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2 +chr18 72700416 . C CTCTATATA 0 PASS DP=24;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:2,2:4,2 +chr18 73201687 . T TC 0 PASS DP=23;GPV=1;SPV=0.0037594;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:3,4:0,4 +chr18 73206219 . G GACACATGC 0 PASS DP=39;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,8:5,1 +chr18 74195852 . ATATATATATGTG A 0 PASS DP=19;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,2:0,0:3,2 +chr18 74514554 . T C 0 PASS DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr18 76312063 . C T 0 PASS DP=67;GPV=1;SPV=3.4018e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,6:11,4 +chr18 76377715 . A ATTTTTTT 0 PASS DP=29;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr18 77234747 . C T 0 PASS DP=71;GPV=1;SPV=0.00020046;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:14,8:9,2 +chr18 78513550 . A G 0 PASS DP=81;GPV=1;SPV=0.0050014;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:10,1:19,5 +chr18 78695069 . A C 0 PASS DP=45;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,3:4,1:1,2 +chr18 79341508 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr18 79820402 . C A 0 PASS DP=59;GPV=1;SPV=5.1966e-11;SS=2;SSC=102;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:5,18:3,11:2,7 +chr19 161053 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1 +chr19 376227 . A G 0 PASS DP=66;GPV=1;SPV=3.1572e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,19:5,11:6,8 +chr19 513703 . A T 0 PASS DP=25;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr19 844020 . G A 0 PASS DP=62;GPV=1;SPV=0.001393;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:10,8:7,7 +chr19 1164423 . G C 0 PASS DP=21;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:1,1:4,1 +chr19 1164524 . CAGG C 0 PASS DP=19;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:1,2:2,3 +chr19 3475636 . T C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr19 3651055 . G GTTT 0 PASS DP=39;GPV=1;SPV=0.013514;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:12,5:3,2 +chr19 3674167 . A ACT 0 PASS DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:14,5:10,3 +chr19 4753332 . G GA 0 PASS DP=28;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:5,4:0,1 +chr19 5265174 . G A 0 PASS DP=68;GPV=1;SPV=8.8195e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,2:7,9 +chr19 5357533 . C T 0 PASS DP=56;GPV=1;SPV=2.4214e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:4,7:7,5 +chr19 5518389 . A G 0 PASS DP=57;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:11,4:10,2:1,2 +chr19 7458296 . T TA 0 PASS DP=39;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:8,3:11,1 +chr19 8440982 . GTTTTT G 0 PASS DP=21;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,3:2,1 +chr19 8720253 . T C 0 PASS DP=22;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,3:1,1:5,2 +chr19 8977752 . C T 0 PASS DP=56;GPV=1;SPV=0.0041454;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,1:11,5 +chr19 9014031 . G T 0 PASS DP=48;GPV=1;SPV=1.4124e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:4,7:5,3 +chr19 10075340 . C CA 0 PASS DP=37;GPV=1;SPV=0.012138;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:4,2:5,2 +chr19 10589212 . AT A 0 PASS DP=50;GPV=1;SPV=0.00011933;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,6:7,5 +chr19 12278316 . G A 0 PASS DP=48;GPV=1;SPV=0.00029659;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,4:6,5 +chr19 13416277 . A AT 0 PASS DP=43;GPV=1;SPV=0.0081556;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,6:7,3 +chr19 13443338 . ATTTTAT A 0 PASS DP=53;GPV=1;SPV=0.0042025;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:8,9:8,3 +chr19 13747881 . G A 0 PASS DP=83;GPV=1;SPV=2.9635e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:15,6:14,8 +chr19 14730455 . CCTCT C 0 PASS DP=39;GPV=1;SPV=0.03094;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:5,3:12,3 +chr19 15038635 . C T 0 PASS DP=57;GPV=1;SPV=0.037847;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,1:9,3 +chr19 16450477 . C CT 0 PASS DP=27;GPV=1;SPV=0.01204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,3:2,2 +chr19 16472433 . T C 0 PASS DP=54;GPV=1;SPV=0.018925;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chr19 19398485 . G A 0 PASS DP=36;GPV=1;SPV=0.0015417;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:1,2:7,4 +chr19 21307163 . A T 0 PASS DP=62;GPV=1;SPV=0.014432;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,6:13,5:6,1 +chr19 21611259 . T G 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,1:5,7 +chr19 22445435 . T C 0 PASS DP=62;GPV=1;SPV=2.454e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:8,8:9,10 +chr19 22448089 . T C 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:23,3:5,3 +chr19 22698657 . CTTTTTTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,5:4,2 +chr19 23964406 . G A 0 PASS DP=48;GPV=1;SPV=0.015726;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,3:10,1 +chr19 24389137 . C A 0 PASS DP=132;GPV=1;SPV=0.0064764;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:52,6:23,4:29,2 +chr19 24437013 . A T 0 PASS DP=116;GPV=1;SPV=0.020145;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:31,4:13,6 +chr19 27958087 . T TGATA 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:15,4:6,2 +chr19 29095436 . C T 0 PASS DP=33;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,3:0,1:6,2 +chr19 29494823 . A G 0 PASS DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0 +chr19 29901399 . A T 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr19 31009586 . G A 0 PASS DP=62;GPV=1;SPV=4.7869e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:10,7:10,7 +chr19 32128553 . G A 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,1:4,3 +chr19 32318146 . G C 0 PASS DP=32;GPV=1;SPV=0.0017334;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:6,5:3,9 +chr19 32318147 . T C 0 PASS DP=29;GPV=1;SPV=0.00097094;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:4,5:3,7 +chr19 32351419 . C CTG 0 PASS DP=24;GPV=1;SPV=0.011696;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:4,3:0,1 +chr19 32940266 . C T 0 PASS DP=32;GPV=1;SPV=0.018485;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:0,3:10,8 +chr19 33023784 . C CA 0 PASS DP=20;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:4,3:1,1 +chr19 34101461 . C CA 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3 +chr19 36190991 . CA C 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,5:4,1 +chr19 36268999 . C G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr19 36301999 . C G 0 PASS DP=20;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,3:6,3:0,0 +chr19 37268114 . T A 0 PASS DP=69;GPV=1;SPV=0.0036749;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:8,3:11,8 +chr19 37290068 . C G 0 PASS DP=58;GPV=1;SPV=0.074163;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,0:27,4 +chr19 37493362 . TA T 0 PASS DP=49;GPV=1;SPV=0.0022813;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:6,5:12,4 +chr19 38258689 . T G 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,1:4,3 +chr19 38450773 . C CAATAAATAAATA 0 PASS DP=51;GPV=1;SPV=0.0088972;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2 +chr19 40158875 . C T 0 PASS DP=65;GPV=1;SPV=0.00069047;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,4:7,3 +chr19 40773433 . CA C 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr19 41457272 . A G 0 PASS DP=39;GPV=1;SPV=0.0066591;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,3:4,6 +chr19 45594061 . AAAAT A 0 PASS DP=26;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:3,2:6,2 +chr19 46047138 . C A 0 PASS DP=50;GPV=1;SPV=1.9406e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:3,5:6,4 +chr19 46877250 . A C 0 PASS DP=34;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:1,1:4,1 +chr19 47338275 . TA T 0 PASS DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,2:7,2 +chr19 47922878 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr19 48582961 . T A 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,1:6,5 +chr19 49182090 . ATCTG A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr19 50074720 . C T 0 PASS DP=66;GPV=1;SPV=0.0018313;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,1:8,7 +chr19 50099771 . G A 0 PASS DP=195;GPV=1;SPV=0.038131;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:91,13:40,5:51,8 +chr19 50528408 . G A 0 PASS DP=59;GPV=1;SPV=0.115;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,3:18,2 +chr19 50907404 . CTT C 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:1,2:3,3 +chr19 51425068 . CA C 0 PASS DP=18;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,6:1,4:1,2 +chr19 51782180 . G A 0 PASS DP=59;GPV=1;SPV=0.032881;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:7,2:10,4 +chr19 52761920 . G GAA 0 PASS DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,4:0,0 +chr19 52954040 . C CAAAA 0 PASS DP=32;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:4,9:3,1 +chr19 53286939 . AT A 0 PASS DP=38;GPV=1;SPV=0.0059828;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,4:5,1 +chr19 53366094 . G C 0 PASS DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:2,7:10,3 +chr19 53674343 . T C 0 PASS DP=63;GPV=1;SPV=0.0010146;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:11,7:15,5 +chr19 53946591 . T A 0 PASS DP=22;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:2,1:5,1 +chr19 54246406 . T A 0 PASS DP=24;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:3,1:4,1 +chr19 54986556 . C CTT 0 PASS DP=41;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,7:9,5:3,2 +chr19 55409461 . A C 0 PASS DP=37;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,2:0,0:0,2 +chr19 55983465 . A C 0 PASS DP=31;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:2,1:2,1 +chr19 56962067 . CACAGACACACAG C 0 PASS DP=40;GPV=1;SPV=0.0016986;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,8:3,3 +chr2 389235 . A G 0 PASS DP=36;GPV=1;SPV=0.15966;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:9,2:8,1 +chr2 442407 . G A 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,2:5,2 +chr2 442420 . C CGT 0 PASS DP=35;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:6,2:8,4 +chr2 570393 . G GAAGAAGA 0 PASS DP=44;GPV=1;SPV=0.0038106;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,12:8,9:3,3 +chr2 582563 . G A 0 PASS DP=45;GPV=1;SPV=0.0032805;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:8,15:6,4 +chr2 582950 . A AGGC 0 PASS DP=38;GPV=1;SPV=0.1958;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,1:9,4 +chr2 582951 . C G 0 PASS DP=45;GPV=1;SPV=0.084231;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:15,2:11,6 +chr2 1072531 . A T 0 PASS DP=58;GPV=1;SPV=0.0011582;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:10,4:9,4 +chr2 1139826 . CAAAA C 0 PASS DP=32;GPV=1;SPV=0.037732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:6,6:2,1 +chr2 1244695 . CAAAA C 0 PASS DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,8:7,7:4,1 +chr2 1255895 . A T 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr2 1272706 . C T 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr2 3269281 . G C 0 PASS DP=31;GPV=1;SPV=0.0040496;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:0,3:7,6 +chr2 3530806 . G A 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr2 3590439 . T C 0 PASS DP=48;GPV=1;SPV=0.0249;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:2,2:14,2 +chr2 4318394 . G A 0 PASS DP=77;GPV=1;SPV=4.1953e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:16,7:11,7 +chr2 5198986 . A G 0 PASS DP=50;GPV=1;SPV=0.1463;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,5:12,1 +chr2 5895511 . G T 0 PASS DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,3:21,1 +chr2 6063499 . G A 0 PASS DP=67;GPV=1;SPV=0.0022018;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:16,7:11,2 +chr2 6078180 . G T 0 PASS DP=59;GPV=1;SPV=0.010614;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:18,5:9,3 +chr2 6253208 . A ATATATACACG 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,3:6,3 +chr2 6270012 . CAA C 0 PASS DP=38;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:8,4:5,11 +chr2 9113395 . C CAT 0 PASS DP=61;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:11,2:16,2 +chr2 9254236 . AAT A 0 PASS DP=35;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,4:7,3 +chr2 9828022 . G A 0 PASS DP=41;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,4:0,1:14,3 +chr2 10607750 . T TTTATTATTATTATTATTATTATTA 0 PASS DP=38;GPV=1;SPV=0.061437;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:8,5:12,4 +chr2 11142713 . A ATT 0 PASS DP=27;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,7:0,5:2,2 +chr2 11334510 . CA C 0 PASS DP=51;GPV=1;SPV=0.014047;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:14,10:4,3 +chr2 11607637 . T C 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1 +chr2 11814512 . A ATG 0 PASS DP=65;GPV=1;SPV=0.0079023;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,12:20,10:10,2 +chr2 11902372 . C CTT 0 PASS DP=33;GPV=1;SPV=0.0031331;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr2 12814596 . A AAAAAAG 0 PASS DP=49;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,9:0,4:3,5 +chr2 13826601 . C T 0 PASS DP=60;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1 +chr2 14070832 . A T 0 PASS DP=64;GPV=1;SPV=0.012658;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:20,5:13,5 +chr2 14253010 . CTGTGTGTGTGTGTGTGTG C 0 PASS DP=44;GPV=1;SPV=0.0040496;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:3,3:4,6 +chr2 14516681 . TAAAAAAA T 0 PASS DP=43;GPV=1;SPV=0.018839;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr2 14686910 . GAC G 0 PASS DP=31;GPV=1;SPV=0.001935;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,11:2,8:2,3 +chr2 15857076 . C CAA 0 PASS DP=56;GPV=1;SPV=0.034476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,12:13,8:7,4 +chr2 16039566 . T TTC 0 PASS DP=22;GPV=1;SPV=0.012821;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:0,1:3,4 +chr2 16884742 . A T 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3 +chr2 17018732 . C CAA 0 PASS DP=57;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,11:7,8:5,3 +chr2 17138814 . C A 0 PASS DP=55;GPV=1;SPV=0.029832;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:11,8:4,4:7,4 +chr2 17778199 . T C 0 PASS DP=40;GPV=1;SPV=0.003803;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:5,7:7,5 +chr2 18289119 . A AAGAGAGAGAGAGAGAGAG 0 PASS DP=49;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,7:7,6:2,1 +chr2 18970585 . T C 0 PASS DP=45;GPV=1;SPV=0.0068026;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:4,14:2,9:2,5 +chr2 19548692 . C T 0 PASS DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,5:12,1 +chr2 20374483 . C CAA 0 PASS DP=43;GPV=1;SPV=0.077118;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,13:10,10:11,3 +chr2 20710610 . A G 0 PASS DP=41;GPV=1;SPV=0.03942;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,7:8,1 +chr2 20971929 . C CAAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:16,3:5,1 +chr2 21437292 . A T 0 PASS DP=81;GPV=1;SPV=0.0021615;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:16,6:18,3 +chr2 22532172 . T TTA 0 PASS DP=33;GPV=1;SPV=0.055341;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,6:3,3:5,3 +chr2 22743862 . T C 0 PASS DP=32;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:6,4:3,3 +chr2 24155524 . TATATATA T 0 PASS DP=21;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:0,0:2,2 +chr2 24443841 . T C 0 PASS DP=57;GPV=1;SPV=8.275e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,20:5,11:4,9 +chr2 24939079 . CA C 0 PASS DP=43;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,2:11,2 +chr2 25496842 . C CA 0 PASS DP=42;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,10:6,6:5,4 +chr2 25672203 . CAAAA C 0 PASS DP=31;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,7:2,6:5,1 +chr2 26654811 . TGA T 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,1:12,4 +chr2 26906186 . C CT 0 PASS DP=36;GPV=1;SPV=0.073366;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,5:8,3 +chr2 28076473 . T TTTAG 0 PASS DP=64;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,14:13,8:11,6 +chr2 28258615 . C T 0 PASS DP=25;GPV=1;SPV=0.088235;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,1:4,3 +chr2 28373407 . A C 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,3:4,5 +chr2 28541184 . AT A 0 PASS DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,3:17,1 +chr2 29085657 . TAAA T 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:2,3:9,2 +chr2 30319656 . G A 0 PASS DP=46;GPV=1;SPV=0.0010154;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,5:7,9 +chr2 31725693 . C T 0 PASS DP=79;GPV=1;SPV=0.00027662;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:15,10:17,3 +chr2 31803289 . TAA T 0 PASS DP=60;GPV=1;SPV=0.0034858;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:15,16:6,3 +chr2 32555914 . C CA 0 PASS DP=42;GPV=1;SPV=0.02531;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,11:13,9:3,2 +chr2 34028109 . C A 0 PASS DP=86;GPV=1;SPV=0.033799;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:26,5:18,1 +chr2 34109266 . A T 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,2:6,2 +chr2 34741971 . T TA 0 PASS DP=57;GPV=1;SPV=0.025434;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:13,3:15,4 +chr2 34741975 . A AT 0 PASS DP=54;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,7:10,3:11,4 +chr2 35499194 . G A 0 PASS DP=83;GPV=1;SPV=0.0077613;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:24,5:12,2 +chr2 36342606 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:4,5:7,5 +chr2 36546763 . ATTT A 0 PASS DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,11:1,9:6,2 +chr2 36609232 . CAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:3,11:4,4 +chr2 37309848 . A C 0 PASS DP=44;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,2:5,1:1,1 +chr2 37396940 . T TA 0 PASS DP=53;GPV=1;SPV=0.011309;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:10,5:10,1 +chr2 39226477 . A T 0 PASS DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,3:12,1 +chr2 39686963 . ATGTGTGTGTG A 0 PASS DP=32;GPV=1;SPV=0.0096894;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:2,5:5,1 +chr2 39721985 . CA C 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:8,8:2,1 +chr2 39773575 . AT A 0 PASS DP=47;GPV=1;SPV=0.060413;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,5:11,3:6,2 +chr2 40252939 . G GTACATA 0 PASS DP=37;GPV=1;SPV=0.011671;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:3,5:10,1 +chr2 40997315 . C T 0 PASS DP=61;GPV=1;SPV=0.069027;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,5:14,3:17,2 +chr2 41045911 . C CGAATGAATGAAT 0 PASS DP=61;GPV=1;SPV=0.063369;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,2:20,3 +chr2 41171427 . C G 0 PASS DP=66;GPV=1;SPV=0.023879;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,6:8,5:6,1 +chr2 42009802 . C T 0 PASS DP=81;GPV=1;SPV=0.00059684;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:19,7:12,3 +chr2 44063689 . AT A 0 PASS DP=25;GPV=1;SPV=0.15826;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:11,3:6,2:5,1 +chr2 44301738 . C CAA 0 PASS DP=37;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:10,5:1,1 +chr2 44310681 . AGTT A 0 PASS DP=32;GPV=1;SPV=0.0005858;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:1,5:7,6 +chr2 44315653 . C CAA 0 PASS DP=19;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,6:1,4:1,2 +chr2 44437838 . C CA 0 PASS DP=37;GPV=1;SPV=0.015694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr2 45310277 . C T 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr2 46340130 . C T 0 PASS DP=57;GPV=1;SPV=0.00011639;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,4:8,7 +chr2 46427374 . T A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr2 48089443 . A C 0 PASS DP=40;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,4:4,3:5,1 +chr2 48878004 . A ATTCTTTCTTTCT 0 PASS DP=52;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,4:7,2:11,2 +chr2 49309311 . C G 0 PASS DP=47;GPV=1;SPV=5.6253e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,8:4,4 +chr2 49753142 . A G 0 PASS DP=50;GPV=1;SPV=0.0020146;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:12,3:5,5 +chr2 50596863 . C CTT 0 PASS DP=23;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:0,3:4,1 +chr2 50601071 . C CA 0 PASS DP=62;GPV=1;SPV=0.00034047;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,5:5,4 +chr2 51458304 . C T 0 PASS DP=47;GPV=1;SPV=0.0050687;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,4:10,5 +chr2 51924536 . G A 0 PASS DP=60;GPV=1;SPV=4.0043e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:9,9:5,10 +chr2 53870320 . A G 0 PASS DP=50;GPV=1;SPV=0.0027568;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:13,3:6,6 +chr2 54682411 . C CTT 0 PASS DP=27;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:0,2:2,2 +chr2 56864191 . G A 0 PASS DP=66;GPV=1;SPV=3.4255e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:13,12:4,2 +chr2 57006910 . TATATATATATATATATAAACCTGTTATATATATAAAAC T 0 PASS DP=38;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:4,4:8,4 +chr2 57063466 . A T 0 PASS DP=57;GPV=1;SPV=5.7929e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:5,5:6,9 +chr2 57547942 . A AAAAG 0 PASS DP=29;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:6,4:0,1 +chr2 57732451 . C A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,1:9,3 +chr2 59848883 . CA C 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr2 61007769 . C CAA 0 PASS DP=38;GPV=1;SPV=0.0027397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,10:4,9:5,1 +chr2 63615727 . T A 0 PASS DP=34;GPV=1;SPV=0.0017612;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,5:5,4 +chr2 64550677 . GCACACACACACACACA G 0 PASS DP=34;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:8,5:1,2 +chr2 65552580 . C T 0 PASS DP=30;GPV=1;SPV=0.030303;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,4:1,3:1,1 +chr2 66410622 . T C 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,2:9,2 +chr2 66575383 . CTCTG C 0 PASS DP=51;GPV=1;SPV=0.01121;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr2 67473955 . CTT C 0 PASS DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:3,3:2,3 +chr2 67773641 . C A 0 PASS DP=20;GPV=1;SPV=0.028846;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:4,1:0,4 +chr2 68802407 . CA C 0 PASS DP=27;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:4,7:1,1 +chr2 70361237 . CT C 0 PASS DP=23;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,5:3,2 +chr2 71094258 . ATT A 0 PASS DP=27;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:5,4:1,3 +chr2 71540059 . T C 0 PASS DP=49;GPV=1;SPV=0.00063642;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,5:7,4 +chr2 72881088 . AT A 0 PASS DP=48;GPV=1;SPV=0.0062317;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,6:4,2 +chr2 77526486 . C CA 0 PASS DP=34;GPV=1;SPV=0.0013098;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,9:3,8:0,1 +chr2 78176814 . G GA 0 PASS DP=58;GPV=1;SPV=0.00049333;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:4,6:11,4 +chr2 78289265 . ATTTTATTATTATTATTATTTT A 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:5,3:13,4 +chr2 78400872 . CAA C 0 PASS DP=28;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,8:1,7:2,1 +chr2 79072702 . G A 0 PASS DP=54;GPV=1;SPV=4.6927e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:7,9:5,4 +chr2 79411292 . C G 0 PASS DP=62;GPV=1;SPV=0.0024076;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,4:13,3 +chr2 79589914 . A G 0 PASS DP=51;GPV=1;SPV=0.0014731;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,6:6,1 +chr2 80813512 . G GT 0 PASS DP=60;GPV=1;SPV=1.9105e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:13,13:6,5 +chr2 80953114 . A G 0 PASS DP=58;GPV=1;SPV=6.2645e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,4:7,6 +chr2 81926246 . G A 0 PASS DP=66;GPV=1;SPV=8.4415e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,7:5,2 +chr2 83190122 . G GTT 0 PASS DP=35;GPV=1;SPV=0.0033;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,5:5,4 +chr2 83341502 . T A 0 PASS DP=26;GPV=1;SPV=0.01093;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:5,6:1,4 +chr2 84334411 . C CA 0 PASS DP=42;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:12,5:3,3 +chr2 85000311 . G C 0 PASS DP=56;GPV=1;SPV=0.00034177;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,19:4,11:11,8 +chr2 85041762 . T A 0 PASS DP=27;GPV=1;SPV=0.017168;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,3:2,1 +chr2 85408338 . T TCACACACACA 0 PASS DP=40;GPV=1;SPV=0.0044859;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,2:5,5 +chr2 85686432 . CA C 0 PASS DP=59;GPV=1;SPV=0.023721;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,2:14,3 +chr2 87430689 . AAGCC A 0 PASS DP=147;GPV=1;SPV=0.038661;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:56,14:29,10:27,4 +chr2 87563860 . C G 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,3:7,2 +chr2 87599153 . CGTT C 0 PASS DP=32;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:1,3:8,3 +chr2 88044863 . A AT 0 PASS DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,8:1,3:3,5 +chr2 88463363 . G C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr2 89094821 . CA C 0 PASS DP=19;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:4,3:0,1 +chr2 89532659 . G A 0 PASS DP=26;GPV=1;SPV=0.015103;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,3:2,4 +chr2 89540417 . T A 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr2 89667558 . T A 0 PASS DP=126;GPV=1;SPV=0.016207;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:21,7:29,4 +chr2 89775125 . C T 0 PASS DP=54;GPV=1;SPV=0.13783;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,2:18,3 +chr2 90321280 . T C 0 PASS DP=80;GPV=1;SPV=0.013504;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,1:12,4 +chr2 90336867 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr2 90372920 . G A 0 PASS DP=68;GPV=1;SPV=0.0096525;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,9:15,5 +chr2 91442904 . ATTTTTCCCGCCGCGGC A 0 PASS DP=53;GPV=1;SPV=0.01202;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:3,2:12,4 +chr2 91504286 . T C 0 PASS DP=52;GPV=1;SPV=0.003665;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:11,1:5,5 +chr2 91521743 . T G 0 PASS DP=54;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,3:10,1 +chr2 91527918 . G GC 0 PASS DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,3:10,3 +chr2 91638781 . A G 0 PASS DP=103;GPV=1;SPV=0.020164;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:3,2:35,10 +chr2 91884370 . A C 0 PASS DP=130;GPV=1;SPV=0.015979;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:25,10:22,3 +chr2 91892630 . T C 0 PASS DP=223;GPV=1;SPV=0.027012;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:93,20:40,10:53,10 +chr2 91964214 . C A 0 PASS DP=69;GPV=1;SPV=0.044775;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,5:8,2 +chr2 92057665 . G A 0 PASS DP=112;GPV=1;SPV=0.013788;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:26,5:21,3 +chr2 92097267 . T C 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,1:14,3 +chr2 92198924 . G C 0 PASS DP=141;GPV=1;SPV=0.0079465;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:58,13:47,10:11,3 +chr2 92294266 . G C 0 PASS DP=69;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:3,2:27,3 +chr2 92353052 . G T 0 PASS DP=201;GPV=1;SPV=0.0084739;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:67,17:56,11:11,6 +chr2 92353193 . T A 0 PASS DP=325;GPV=1;SPV=0.015908;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:111,25:40,8:71,17 +chr2 92353271 . A G 0 PASS DP=220;GPV=1;SPV=0.014112;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:83,17:25,6:58,11 +chr2 92402812 . T A 0 PASS DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1 +chr2 92480710 . G T 0 PASS DP=81;GPV=1;SPV=0.05493;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:5,3:31,1 +chr2 92624123 . T A 0 PASS DP=512;GPV=1;SPV=0.015203;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:224:201,23:113,19:88,4 +chr2 92629390 . G T 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:0,0:29,4 +chr2 92637488 . T C 0 PASS DP=89;GPV=1;SPV=0.03743;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:21,3:15,1 +chr2 92673300 . C T 0 PASS DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:14,4:8,1 +chr2 92686008 . C T 0 PASS DP=83;GPV=1;SPV=0.0218;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,7:19,2 +chr2 92830576 . G T 0 PASS DP=274;GPV=1;SPV=0.030827;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:107,24:89,20:18,4 +chr2 92864893 . G C 0 PASS DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr2 92912300 . C G 0 PASS DP=115;GPV=1;SPV=0.044421;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:45,7:36,6:9,1 +chr2 93006447 . C A 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,1:16,3 +chr2 93009734 . A T 0 PASS DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1 +chr2 93026707 . A C 0 PASS DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr2 93138864 . T A 0 PASS DP=124;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:13,1:38,5 +chr2 93312713 . C A 0 PASS DP=106;GPV=1;SPV=0.012965;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:34,12:3,2 +chr2 93395646 . A G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr2 93473993 . G A 0 PASS DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:0,0:28,4 +chr2 93510620 . T A 0 PASS DP=135;GPV=1;SPV=0.041814;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:36,3:19,12 +chr2 93678439 . T C 0 PASS DP=93;GPV=1;SPV=0.045658;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:24,8:14,2 +chr2 93700638 . T G 0 PASS DP=60;GPV=1;SPV=0.0023241;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:12,7:4,3 +chr2 93996189 . C G 0 PASS DP=36;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr2 94143190 . T C 0 PASS DP=55;GPV=1;SPV=0.012732;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,2:9,5 +chr2 94271787 . T G 0 PASS DP=181;GPV=1;SPV=0.00074329;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:68,22:39,17:29,5 +chr2 94743299 . C T 0 PASS DP=54;GPV=1;SPV=1.4739e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:4,2:7,8 +chr2 97250532 . AG A 0 PASS DP=30;GPV=1;SPV=0.066411;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:3,1:9,3 +chr2 97260377 . T C 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,1:6,4 +chr2 100552186 . G T 0 PASS DP=30;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:3,10:0,4:3,6 +chr2 101530358 . CATATATACCCATACATATATACACATACAT C 0 PASS DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,2:5,2 +chr2 102563794 . TGA T 0 PASS DP=38;GPV=1;SPV=0.0023462;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:2,4:5,5 +chr2 103963608 . CT C 0 PASS DP=23;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr2 104278393 . G A 0 PASS DP=65;GPV=1;SPV=8.9498e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:11,7:8,8 +chr2 105562853 . C CAA 0 PASS DP=27;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:5,5:1,2 +chr2 106422542 . C T 0 PASS DP=65;GPV=1;SPV=0.0092954;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,5:8,2 +chr2 106467439 . G A 0 PASS DP=30;GPV=1;SPV=0.02609;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,1:6,3 +chr2 107447361 . A C 0 PASS DP=40;GPV=1;SPV=0.10714;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:1,1:0,1 +chr2 107852252 . A C 0 PASS DP=38;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,2:2,1:1,1 +chr2 108275816 . G A 0 PASS DP=39;GPV=1;SPV=0.012719;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr2 108508724 . C T 0 PASS DP=45;GPV=1;SPV=0.042059;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3 +chr2 110361374 . C T 0 PASS DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,4:16,2 +chr2 110623400 . C A 0 PASS DP=84;GPV=1;SPV=0.027025;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:15,3:14,8 +chr2 111180004 . C CT 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,3:3,1 +chr2 111613863 . A G 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr2 112184685 . G A 0 PASS DP=42;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,3:12,1 +chr2 114364103 . C A 0 PASS DP=47;GPV=1;SPV=0.00048241;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:9,7:7,6 +chr2 114396545 . TTTC T 0 PASS DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:4,1:6,3 +chr2 115391550 . G A 0 PASS DP=52;GPV=1;SPV=0.065377;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:10,3:16,2 +chr2 115698085 . G A 0 PASS DP=57;GPV=1;SPV=6.1268e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:10,6:8,8 +chr2 116917336 . A T 0 PASS DP=49;GPV=1;SPV=0.0081305;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,3:8,2 +chr2 118188323 . G GCACACACA 0 PASS DP=35;GPV=1;SPV=0.013595;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,7:5,4:0,3 +chr2 118302808 . ATATATG A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,3:13,1 +chr2 118964887 . C CAA 0 PASS DP=40;GPV=1;SPV=0.04394;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1 +chr2 119557958 . CA C 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:5,7:0,2 +chr2 121122457 . C CT 0 PASS DP=48;GPV=1;SPV=0.010459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,5:9,2 +chr2 121706815 . CA C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1 +chr2 122421266 . G A 0 PASS DP=57;GPV=1;SPV=0.00019952;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,5:9,7 +chr2 122432981 . G GTGTGTGTGTGTC 0 PASS DP=50;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:9,5:7,3 +chr2 126407992 . G C 0 PASS DP=30;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,8:7,7:1,1 +chr2 126677527 . G A 0 PASS DP=41;GPV=1;SPV=0.0094148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,7:2,3 +chr2 127829056 . G A 0 PASS DP=68;GPV=1;SPV=2.7627e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:13,8:6,8 +chr2 128268025 . G GT 0 PASS DP=65;GPV=1;SPV=0.047789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:8,2:18,4 +chr2 128511430 . G A 0 PASS DP=54;GPV=1;SPV=8.9236e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:6,6:6,12 +chr2 130590444 . G A 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr2 130627652 . C G 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,3:11,1 +chr2 130896509 . G A 0 PASS DP=59;GPV=1;SPV=3.3518e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:9,8:2,6 +chr2 131174999 . G T 0 PASS DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,3:14,1 +chr2 131776392 . C T 0 PASS DP=70;GPV=1;SPV=0.072031;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,3:21,1 +chr2 131895749 . G C 0 PASS DP=55;GPV=1;SPV=0.0040793;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,6:0,4:0,2 +chr2 132048949 . GTTTCTTTCTTTCTTTC G 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr2 132100118 . G T 0 PASS DP=62;GPV=1;SPV=0.03112;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:11,3:16,2 +chr2 132221353 . A C 0 PASS DP=27;GPV=1;SPV=0.15556;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:7,1:5,2 +chr2 132363166 . G A 0 PASS DP=193;GPV=1;SPV=0.0023838;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:81,15:32,7:49,8 +chr2 132925561 . CA C 0 PASS DP=34;GPV=1;SPV=0.0083426;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,7:1,1 +chr2 133139482 . G T 0 PASS DP=65;GPV=1;SPV=0.06044;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,3:14,1 +chr2 133461101 . A G 0 PASS DP=46;GPV=1;SPV=3.4067e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:5,4:4,10 +chr2 134381383 . T A 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr2 135496384 . TA T 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr2 136689368 . AAT A 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:21,3:9,1 +chr2 137566490 . A G 0 PASS DP=55;GPV=1;SPV=1.7548e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:8,10:5,7 +chr2 138807016 . T TATTATTGA 0 PASS DP=54;GPV=1;SPV=9.3853e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,11:6,2 +chr2 139150839 . G GGAGA 0 PASS DP=24;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:10,4:0,0 +chr2 139366710 . A G 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,5:6,4 +chr2 140228126 . C CA 0 PASS DP=39;GPV=1;SPV=0.0075865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,2:5,3 +chr2 140228127 . C T 0 PASS DP=37;GPV=1;SPV=0.047794;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,3:5,2:5,1 +chr2 140303012 . C CAT 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:5,6:0,2 +chr2 142411798 . ATATATG A 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,1:7,3 +chr2 143166001 . A AGAAAGAAAGAAGGAAG 0 PASS DP=29;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,3:4,1 +chr2 143270022 . G T 0 PASS DP=65;GPV=1;SPV=3.5037e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,5:8,7 +chr2 143421802 . G A 0 PASS DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:3,2:6,2 +chr2 143430177 . C CT 0 PASS DP=34;GPV=1;SPV=0.0006993;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:1,8:0,3:1,5 +chr2 143861440 . G A 0 PASS DP=49;GPV=1;SPV=0.079204;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:16,3:11,3 +chr2 144522848 . G A 0 PASS DP=63;GPV=1;SPV=0.0037466;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:13,3:4,2 +chr2 148308484 . GTTCT G 0 PASS DP=27;GPV=1;SPV=0.056741;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,5:6,2 +chr2 148345476 . T TAC 0 PASS DP=39;GPV=1;SPV=0.023109;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr2 148816631 . T C 0 PASS DP=50;GPV=1;SPV=0.025076;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:13,2:7,3 +chr2 149328067 . CAAA C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr2 150278593 . A C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:0,1:1,1 +chr2 151113079 . CA C 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,2:12,2 +chr2 151498891 . T TAAAA 0 PASS DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:7,7:12,6 +chr2 152146271 . C CA 0 PASS DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr2 153357566 . G C 0 PASS DP=56;GPV=1;SPV=9.5438e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:10,10:5,5 +chr2 155917648 . G T 0 PASS DP=59;GPV=1;SPV=0.0030549;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:16,5:10,6 +chr2 156917624 . C A 0 PASS DP=52;GPV=1;SPV=0.077483;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,3:14,2 +chr2 157442473 . A C 0 PASS DP=54;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:0,2:0,1:0,1 +chr2 157500730 . A G 0 PASS DP=40;GPV=1;SPV=0.12981;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:5,4:6,1 +chr2 160349553 . A AAG 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,5:3,1 +chr2 161109807 . G A 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,2:20,2 +chr2 163323047 . GT G 0 PASS DP=37;GPV=1;SPV=0.0023627;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,7:7,2 +chr2 163518074 . A C 0 PASS DP=43;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:1,3:1,1:0,2 +chr2 163994673 . C CT 0 PASS DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3 +chr2 165735010 . C G 0 PASS DP=29;GPV=1;SPV=0.0019452;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr2 165788466 . GGTGT G 0 PASS DP=36;GPV=1;SPV=0.024328;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,4:4,2 +chr2 166287394 . TA T 0 PASS DP=56;GPV=1;SPV=0.0061831;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:10,3:5,8 +chr2 167492810 . G A 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,5:11,4 +chr2 167899291 . C CAAAA 0 PASS DP=44;GPV=1;SPV=0.023173;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:10,3:1,1 +chr2 168004732 . CA C 0 PASS DP=36;GPV=1;SPV=0.0038917;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,8:3,1 +chr2 169099120 . A G 0 PASS DP=54;GPV=1;SPV=3.3787e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:6,9:9,4 +chr2 169826106 . C CAAAA 0 PASS DP=25;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,4:6,1 +chr2 171477453 . A ATT 0 PASS DP=70;GPV=1;SPV=0.0040779;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,10:8,8:14,2 +chr2 174807446 . CTGTGTGTG C 0 PASS DP=43;GPV=1;SPV=0.049486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,3:5,2 +chr2 179521353 . G GTTT 0 PASS DP=27;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:3,4:3,2 +chr2 180451237 . AT A 0 PASS DP=66;GPV=1;SPV=3.9986e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,5:7,5 +chr2 181490456 . T A 0 PASS DP=45;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:0,2:0,0:0,2 +chr2 183029460 . C CA 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:14,2:6,2 +chr2 183454423 . G A 0 PASS DP=66;GPV=1;SPV=6.0898e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:8,7:10,7 +chr2 184798006 . A ATG 0 PASS DP=39;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,6:6,4:6,2 +chr2 185010375 . T C 0 PASS DP=58;GPV=1;SPV=0.011595;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:8,2:12,3 +chr2 185865358 . T C 0 PASS DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,4:13,1 +chr2 185865552 . G A 0 PASS DP=57;GPV=1;SPV=0.0063654;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:10,5:14,3 +chr2 188055136 . C CAA 0 PASS DP=39;GPV=1;SPV=0.031681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:10,9:4,2 +chr2 188093579 . A G 0 PASS DP=59;GPV=1;SPV=3.1777e-10;SS=2;SSC=94;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,20:3,6:4,14 +chr2 188333244 . T TA 0 PASS DP=48;GPV=1;SPV=0.0065287;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,5:9,2 +chr2 188353549 . C A 0 PASS DP=58;GPV=1;SPV=0.00081536;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,4:8,3 +chr2 190040492 . C A 0 PASS DP=63;GPV=1;SPV=0.0060836;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:10,1:15,6 +chr2 191383494 . G GTATATA 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr2 191517028 . G C 0 PASS DP=66;GPV=1;SPV=0.00054114;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:6,5:14,3 +chr2 192882338 . C A 0 PASS DP=63;GPV=1;SPV=8.8646e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,8:8,5 +chr2 194369635 . C CTATATATA 0 PASS DP=26;GPV=1;SPV=0.00029138;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:0,7:0,6:0,1 +chr2 196622718 . G C 0 PASS DP=75;GPV=1;SPV=4.7298e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:8,9:9,5 +chr2 197440209 . A ATGTG 0 PASS DP=36;GPV=1;SPV=0.0036697;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,5:3,3 +chr2 199788419 . G A 0 PASS DP=67;GPV=1;SPV=1.6711e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,6:7,5 +chr2 201805450 . C CA 0 PASS DP=24;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,4:6,4:0,0 +chr2 201947222 . G GTT 0 PASS DP=42;GPV=1;SPV=0.012719;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:8,5:1,2 +chr2 201959350 . C CCACA 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,6:5,4 +chr2 201962210 . CAA C 0 PASS DP=19;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:3,4:0,0 +chr2 204986101 . C CA 0 PASS DP=32;GPV=1;SPV=0.0014993;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:6,7:1,1 +chr2 205842354 . CTCTTT C 0 PASS DP=20;GPV=1;SPV=0.003612;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4 +chr2 205912237 . A AGATGGATG 0 PASS DP=48;GPV=1;SPV=9.294e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:1,2:5,8 +chr2 208772093 . C CTTT 0 PASS DP=24;GPV=1;SPV=0.002331;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:0,7:0,5:0,2 +chr2 213276117 . T C 0 PASS DP=56;GPV=1;SPV=1.2748e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,20:5,10:4,10 +chr2 213643067 . A G 0 PASS DP=28;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:0,1:2,1 +chr2 213852516 . G A 0 PASS DP=51;GPV=1;SPV=0.0016986;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,6:6,2 +chr2 213876321 . G A 0 PASS DP=32;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,3:1,1:5,2 +chr2 215677637 . AC A 0 PASS DP=25;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:2,3:3,2 +chr2 216577470 . TTC T 0 PASS DP=39;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,5:5,3 +chr2 219934644 . G A 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,1:6,3 +chr2 220020588 . C CA 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,2:9,2 +chr2 220861515 . GCACA G 0 PASS DP=43;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:8,6:1,2 +chr2 223931690 . T C 0 PASS DP=48;GPV=1;SPV=0.044913;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:12,2:2,4 +chr2 224137290 . ATGCC A 0 PASS DP=46;GPV=1;SPV=0.0050177;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,3:6,5 +chr2 225181939 . T A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr2 226214446 . C CTG 0 PASS DP=48;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,12:5,8:4,4 +chr2 227073870 . C T 0 PASS DP=66;GPV=1;SPV=4.6376e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:8,8:8,9 +chr2 227728521 . C A 0 PASS DP=49;GPV=1;SPV=0.002854;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,4:8,3 +chr2 228955072 . G T 0 PASS DP=47;GPV=1;SPV=0.0038981;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,2:5,5 +chr2 229125972 . C A 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,2:14,2 +chr2 229904416 . C CA 0 PASS DP=27;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:7,1:1,3 +chr2 231829139 . G A 0 PASS DP=23;GPV=1;SPV=0.047431;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr2 231838616 . G C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,1:0,1 +chr2 231842471 . T G 0 PASS DP=51;GPV=1;SPV=0.03845;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:1,0:18,4 +chr2 232438095 . T TA 0 PASS DP=57;GPV=1;SPV=0.00077529;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,6:10,9 +chr2 232836391 . T TATAA 0 PASS DP=22;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:3,4:0,1 +chr2 233562326 . C A 0 PASS DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:14,5:10,1 +chr2 233597605 . T A 0 PASS DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:9,5:17,8 +chr2 234183880 . AAG A 0 PASS DP=34;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:6,4:0,2 +chr2 235032595 . G C 0 PASS DP=73;GPV=1;SPV=4.0078e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:7,6:9,12 +chr2 235878221 . G A 0 PASS DP=73;GPV=1;SPV=0.0022131;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,2:9,4 +chr2 236120317 . C T 0 PASS DP=61;GPV=1;SPV=5.5438e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,6:8,6 +chr2 237771302 . C CA 0 PASS DP=39;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,7:4,1 +chr2 238110240 . T A 0 PASS DP=66;GPV=1;SPV=0.033846;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:9,2:12,3 +chr2 238745493 . GCAGTGAGGAACC G 0 PASS DP=53;GPV=1;SPV=2.0845e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:4,5:6,4 +chr2 239121000 . C CT 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:5,9:3,2 +chr2 239865914 . CACACAGAT C 0 PASS DP=42;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:7,1:13,3 +chr2 241993180 . T C 0 PASS DP=43;GPV=1;SPV=0.00011443;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,11:3,8:3,3 +chr2 241993185 . T C 0 PASS DP=44;GPV=1;SPV=0.00020869;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:3,8:4,3 +chr2 242088472 . C G 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr2 242183069 . C G 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr20 1504776 . C CGTGTGTGT 0 PASS DP=42;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:11,5:7,2 +chr20 5026045 . T C 0 PASS DP=28;GPV=1;SPV=0.012836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2 +chr20 6109902 . C CAA 0 PASS DP=39;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,10:3,8:3,2 +chr20 7194105 . A T 0 PASS DP=56;GPV=1;SPV=1.0613e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:8,8:6,5 +chr20 7273506 . C T 0 PASS DP=47;GPV=1;SPV=0.0010258;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:7,6:9,4 +chr20 7647654 . C T 0 PASS DP=62;GPV=1;SPV=0.0011821;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:17,5:8,6 +chr20 7773988 . AT A 0 PASS DP=44;GPV=1;SPV=0.025088;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,4:6,2 +chr20 7909383 . A ATG 0 PASS DP=31;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:7,4:1,1 +chr20 8744616 . T TAAATA 0 PASS DP=32;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:5,1:2,5 +chr20 9824389 . TA T 0 PASS DP=54;GPV=1;SPV=0.0015015;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,4:9,4 +chr20 10028303 . A C 0 PASS DP=40;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,4:10,2:7,2 +chr20 11374566 . TTA T 0 PASS DP=42;GPV=1;SPV=0.042738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,2:4,3 +chr20 11769171 . CTT C 0 PASS DP=25;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,6:3,3:0,3 +chr20 13305200 . A T 0 PASS DP=52;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,2:6,1:0,1 +chr20 14095330 . G A 0 PASS DP=60;GPV=1;SPV=8.3837e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:7,11:9,3 +chr20 14130552 . A G 0 PASS DP=58;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3 +chr20 14176992 . A AG 0 PASS DP=51;GPV=1;SPV=0.01551;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr20 14222821 . A G 0 PASS DP=40;GPV=1;SPV=0.0021008;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,4:1,4:0,0 +chr20 17161170 . CA C 0 PASS DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,7:7,2 +chr20 19024244 . A AAAAG 0 PASS DP=27;GPV=1;SPV=0.026006;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:2,3:3,1 +chr20 19920825 . AC A 0 PASS DP=53;GPV=1;SPV=8.5276e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,6:4,2 +chr20 19923129 . G A 0 PASS DP=76;GPV=1;SPV=3.4821e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:16,10:7,6 +chr20 19958531 . G T 0 PASS DP=51;GPV=1;SPV=0.0001635;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,3:7,6 +chr20 21166148 . A AT 0 PASS DP=42;GPV=1;SPV=0.0057786;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:2,6:9,5 +chr20 21721607 . CATAT C 0 PASS DP=20;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,4:1,1 +chr20 22082360 . C T 0 PASS DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:2,3:12,2 +chr20 22743815 . A T 0 PASS DP=47;GPV=1;SPV=0.032371;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:12,4:4,2 +chr20 23277049 . G GCACACACACA 0 PASS DP=44;GPV=1;SPV=0.004671;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,4:5,5 +chr20 23864601 . T C 0 PASS DP=58;GPV=1;SPV=0.0311;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:16,3:9,2 +chr20 24432255 . A C 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr20 25427869 . A AT 0 PASS DP=38;GPV=1;SPV=0.0045922;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,4:5,5 +chr20 26450344 . C A 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,3:1,1 +chr20 26483655 . C T 0 PASS DP=57;GPV=1;SPV=0.0066919;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:9,4:10,8 +chr20 26489609 . A T 0 PASS DP=292;GPV=1;SPV=0.042754;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:112,23:93,21:19,2 +chr20 26523728 . G A 0 PASS DP=141;GPV=1;SPV=0.040347;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:65,9:0,1:65,8 +chr20 26523764 . A T 0 PASS DP=115;GPV=1;SPV=0.028719;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:0,2:50,5 +chr20 26523770 . AC A 0 PASS DP=110;GPV=1;SPV=0.018897;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:52,6:1,1:51,5 +chr20 27161450 . G C 0 PASS DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:8,1:20,3 +chr20 28178113 . G T 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr20 28613576 . T A 0 PASS DP=135;GPV=1;SPV=0.029814;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:23,4:27,3 +chr20 28624728 . C T 0 PASS DP=93;GPV=1;SPV=0.032947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:18,4:25,1 +chr20 28804568 . A G 0 PASS DP=174;GPV=1;SPV=0.022182;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:65,15:43,13:22,2 +chr20 28808514 . T C 0 PASS DP=195;GPV=1;SPV=0.029038;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:80,11:33,7:47,4 +chr20 28819540 . A C 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr20 28823977 . A G 0 PASS DP=131;GPV=1;SPV=0.035515;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:27,10:25,5 +chr20 28868737 . T G 0 PASS DP=320;GPV=1;SPV=0.04665;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:143,24:99,21:44,3 +chr20 28900698 . A T 0 PASS DP=188;GPV=1;SPV=0.017497;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:84,12:50,8:34,4 +chr20 28910124 . A G 0 PASS DP=246;GPV=1;SPV=0.044993;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,19:53,17:36,2 +chr20 28946744 . G A 0 PASS DP=121;GPV=1;SPV=0.028607;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:31,5:21,4 +chr20 28956255 . C A 0 PASS DP=178;GPV=1;SPV=0.025065;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:66,16:32,9:34,7 +chr20 29058370 . TC T 0 PASS DP=172;GPV=1;SPV=0.009142;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:65,20:28,12:37,8 +chr20 29072135 . TAAAAG T 0 PASS DP=277;GPV=1;SPV=0.025898;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:116,19:52,4:64,15 +chr20 29083045 . C T 0 PASS DP=199;GPV=1;SPV=0.023393;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:82,21:67,16:15,5 +chr20 29227596 . CTGAG C 0 PASS DP=144;GPV=1;SPV=0.012619;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,14:22,8:28,6 +chr20 29227616 . G A 0 PASS DP=164;GPV=1;SPV=0.016958;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:26,9:29,6 +chr20 29310538 . CTT C 0 PASS DP=66;GPV=1;SPV=0.028273;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr20 29330052 . G A 0 PASS DP=279;GPV=1;SPV=0.027918;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:110,23:61,13:49,10 +chr20 29447351 . TG T 0 PASS DP=61;GPV=1;SPV=0.011252;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:15,8:8,5 +chr20 29512679 . C T 0 PASS DP=309;GPV=1;SPV=0.017757;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:115,23:46,8:69,15 +chr20 29521390 . G T 0 PASS DP=108;GPV=1;SPV=0.014524;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:26,5:15,6 +chr20 29657971 . T TGAA 0 PASS DP=48;GPV=1;SPV=0.005254;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5 +chr20 29657980 . G GGTGT 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr20 29796452 . C A 0 PASS DP=52;GPV=1;SPV=1.7307e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,9:7,6 +chr20 29942876 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr20 29956722 . T C 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:22,3:1,1 +chr20 30355851 . C T 0 PASS DP=89;GPV=1;SPV=0.0018664;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:20,8:12,9 +chr20 30521954 . C T 0 PASS DP=64;GPV=1;SPV=1.5568e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,17:5,11:6,6 +chr20 30558895 . C CT 0 PASS DP=55;GPV=1;SPV=0.00012852;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,6:6,3 +chr20 30819569 . G GC 0 PASS DP=201;GPV=1;SPV=0.049223;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:70,13:36,10:34,3 +chr20 30862731 . G C 0 PASS DP=80;GPV=1;SPV=0.027838;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:10,3:17,4 +chr20 30862734 . T TC 0 PASS DP=79;GPV=1;SPV=0.036975;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:9,2:16,4 +chr20 31057307 . G A 0 PASS DP=92;GPV=1;SPV=0.032208;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:26,10:9,2 +chr20 31059449 . T C 0 PASS DP=295;GPV=1;SPV=0.019784;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:131,18:70,11:61,7 +chr20 31060603 . C T 0 PASS DP=771;GPV=1;SPV=0.0020092;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:371:309,62:178,25:131,37 +chr20 31064183 . T C 0 PASS DP=579;GPV=1;SPV=0.019464;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:260:224,36:117,14:107,22 +chr20 31068166 . G C 0 PASS DP=739;GPV=1;SPV=0.007789;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:344:264,52:155,29:109,23 +chr20 31074440 . G T 0 PASS DP=176;GPV=1;SPV=0.010299;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:70,13:37,10:33,3 +chr20 31187381 . G C 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,1:15,4 +chr20 31187382 . A C 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,1:16,4 +chr20 31229983 . G A 0 PASS DP=58;GPV=1;SPV=0.13884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:17,2:15,2 +chr20 31369385 . G GT 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:7,7:2,1 +chr20 32295854 . CT C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,9:2,1 +chr20 32656863 . C CAAAAAAAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.039653;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:7,5:7,1 +chr20 32666762 . CAA C 0 PASS DP=27;GPV=1;SPV=0.0038647;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,2:3,5 +chr20 34461711 . A T 0 PASS DP=39;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,2:3,1:2,1 +chr20 34691039 . C CT 0 PASS DP=38;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chr20 36726914 . C CT 0 PASS DP=29;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr20 37480580 . C T 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr20 38659921 . C G 0 PASS DP=58;GPV=1;SPV=0.022389;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,1:11,5 +chr20 38906292 . T G 0 PASS DP=20;GPV=1;SPV=0.001548;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,3:1,4 +chr20 39462972 . GA G 0 PASS DP=46;GPV=1;SPV=0.018752;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,2:7,2 +chr20 39802656 . G A 0 PASS DP=58;GPV=1;SPV=1.9493e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,4:9,8 +chr20 42312802 . CTTT C 0 PASS DP=19;GPV=1;SPV=0.004816;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,2:0,3 +chr20 42704431 . CA C 0 PASS DP=38;GPV=1;SPV=0.00039082;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:8,5:2,5 +chr20 42755572 . AT A 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:17,2:9,4 +chr20 44764203 . C T 0 PASS DP=26;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,4:2,3:4,1 +chr20 46200369 . G T 0 PASS DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,3:11,2 +chr20 48153175 . C T 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:14,7:4,5 +chr20 48520368 . C G 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,1:11,4 +chr20 51130153 . T TAA 0 PASS DP=43;GPV=1;SPV=0.031992;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,14:2,7:0,7 +chr20 52691582 . C CA 0 PASS DP=48;GPV=1;SPV=0.010106;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,8:7,6:4,2 +chr20 53562726 . C CT 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3 +chr20 54481024 . CATCT C 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,3:5,2 +chr20 55022494 . T TTC 0 PASS DP=34;GPV=1;SPV=0.15152;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,2:1,1:2,1 +chr20 55304872 . A T 0 PASS DP=60;GPV=1;SPV=6.2662e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,7:11,4 +chr20 56281649 . T A 0 PASS DP=23;GPV=1;SPV=0.0079051;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr20 57833936 . T G 0 PASS DP=23;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr20 59050074 . C T 0 PASS DP=49;GPV=1;SPV=0.015231;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:5,4:10,5 +chr20 59300486 . G T 0 PASS DP=85;GPV=1;SPV=0.02006;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,2:16,3 +chr20 59474855 . CT C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr20 59815714 . C T 0 PASS DP=91;GPV=1;SPV=0.00061565;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:16,6:22,5 +chr20 60919897 . T TC 0 PASS DP=36;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:5,1:5,4 +chr20 61424818 . A T 0 PASS DP=45;GPV=1;SPV=0.035975;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr20 62070424 . C G 0 PASS DP=61;GPV=1;SPV=0.00056194;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,1:6,6 +chr20 62322090 . C A 0 PASS DP=81;GPV=1;SPV=0.017013;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,3:14,2 +chr20 62331213 . C T 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:1,3:5,1 +chr20 63879699 . A T 0 PASS DP=24;GPV=1;SPV=0.10145;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr20 64173717 . C T 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,1:5,3 +chr21 5223281 . G T 0 PASS DP=179;GPV=1;SPV=0.021828;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:74,12:33,6:41,6 +chr21 5247110 . T C 0 PASS DP=174;GPV=1;SPV=0.0057805;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:20,5:31,12 +chr21 5250830 . T G 0 PASS DP=132;GPV=1;SPV=0.0022313;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,17:22,7:24,10 +chr21 5313675 . G A 0 PASS DP=99;GPV=1;SPV=0.029623;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:10,3:35,2 +chr21 6365950 . C T 0 PASS DP=281;GPV=1;SPV=0.038596;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:111,16:52,8:59,8 +chr21 6371936 . A G 0 PASS DP=272;GPV=1;SPV=0.0069071;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:110,20:65,6:45,14 +chr21 7314841 . G C 0 PASS DP=68;GPV=1;SPV=0.018316;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2 +chr21 7316307 . G A 0 PASS DP=30;GPV=1;SPV=0.065471;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:4,3:9,5 +chr21 7944360 . G GCCATTCAATTCCTTT 0 PASS DP=177;GPV=1;SPV=0.039942;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:29,11:31,3 +chr21 7951615 . ACATTC A 0 PASS DP=141;GPV=1;SPV=0.018574;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:24,6:34,5 +chr21 7987132 . C T 0 PASS DP=35;GPV=1;SPV=0.0047325;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,5:6,2 +chr21 8033313 . T A 0 PASS DP=348;GPV=1;SPV=0.044691;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:143,16:49,9:94,7 +chr21 8037914 . C T 0 PASS DP=147;GPV=1;SPV=0.00043659;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:48,23:37,12:11,11 +chr21 8527624 . A T 0 PASS DP=208;GPV=1;SPV=0.013578;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:84,14:49,8:35,6 +chr21 8528646 . C T 0 PASS DP=232;GPV=1;SPV=0.037617;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:103,19:52,11:51,8 +chr21 8548926 . A G 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,2:3,2 +chr21 8758126 . TGATG T 0 PASS DP=135;GPV=1;SPV=0.028705;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:61,12:30,2:31,10 +chr21 8759880 . C T 0 PASS DP=162;GPV=1;SPV=0.038112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:34,6:27,2 +chr21 8771265 . CT C 0 PASS DP=209;GPV=1;SPV=0.039069;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:90,13:46,8:44,5 +chr21 8825156 . G A 0 PASS DP=164;GPV=1;SPV=0.031333;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:70,12:26,9:44,3 +chr21 8825344 . C T 0 PASS DP=132;GPV=1;SPV=0.011963;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:60,15:34,9:26,6 +chr21 8863068 . C T 0 PASS DP=475;GPV=1;SPV=0.042033;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:241:215,26:116,9:99,17 +chr21 8877179 . G GA 0 PASS DP=483;GPV=1;SPV=0.034022;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:205,36:105,19:100,17 +chr21 9044754 . T A 0 PASS DP=212;GPV=1;SPV=0.031633;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:94,14:50,10:44,4 +chr21 9060251 . C T 0 PASS DP=180;GPV=1;SPV=0.031958;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:78,12:34,3:44,9 +chr21 9067120 . G C 0 PASS DP=242;GPV=1;SPV=0.034011;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:91,17:41,3:50,14 +chr21 9089597 . A G 0 PASS DP=171;GPV=1;SPV=0.028141;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:44,9:16,7 +chr21 9097650 . C A 0 PASS DP=102;GPV=1;SPV=0.011943;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:35,8:12,2 +chr21 9098286 . G T 0 PASS DP=199;GPV=1;SPV=0.018613;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:89,14:54,2:35,12 +chr21 9104927 . A AC 0 PASS DP=226;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:94,15:51,8:43,7 +chr21 9108830 . A C 0 PASS DP=347;GPV=1;SPV=0.035405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:139,16:60,11:79,5 +chr21 9109157 . T C 0 PASS DP=288;GPV=1;SPV=0.049584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:116,13:66,7:50,6 +chr21 9109513 . A G 0 PASS DP=485;GPV=1;SPV=0.0049984;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:198,25:95,13:103,12 +chr21 9114105 . A T 0 PASS DP=574;GPV=1;SPV=0.0060011;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:273:231,42:115,26:116,16 +chr21 9125433 . G T 0 PASS DP=451;GPV=1;SPV=0.022258;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:182,35:101,17:81,18 +chr21 9138358 . G A 0 PASS DP=418;GPV=1;SPV=0.014354;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:170,24:78,11:92,13 +chr21 9138911 . G T 0 PASS DP=513;GPV=1;SPV=0.0048611;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:193,35:103,17:90,18 +chr21 9140540 . G A 0 PASS DP=451;GPV=1;SPV=0.023884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:183,29:87,11:96,18 +chr21 9141528 . C T 0 PASS DP=435;GPV=1;SPV=0.0021362;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:181,40:83,20:98,20 +chr21 9143132 . T A 0 PASS DP=442;GPV=1;SPV=0.03027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:183,34:97,17:86,17 +chr21 9147618 . C A 0 PASS DP=641;GPV=1;SPV=0.033085;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:291:256,35:148,13:108,22 +chr21 9158498 . G GA 0 PASS DP=444;GPV=1;SPV=0.0065601;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:230:202,28:105,10:97,18 +chr21 9166301 . C T 0 PASS DP=303;GPV=1;SPV=0.008751;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:129,17:68,8:61,9 +chr21 9166896 . C A 0 PASS DP=428;GPV=1;SPV=0.0047644;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:189:169,20:89,12:80,8 +chr21 9183824 . C T 0 PASS DP=326;GPV=1;SPV=7.1277e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:130,20:66,11:64,9 +chr21 9186372 . T C 0 PASS DP=357;GPV=1;SPV=0.035248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:141,25:74,14:67,11 +chr21 9248472 . A G 0 PASS DP=214;GPV=1;SPV=0.0098761;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:87,13:43,9:44,4 +chr21 9252637 . T G 0 PASS DP=554;GPV=1;SPV=0.0015313;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:277:244,33:101,14:143,19 +chr21 9254213 . C G 0 PASS DP=164;GPV=1;SPV=0.0079825;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:62,21:3,14:59,7 +chr21 9256336 . C T 0 PASS DP=718;GPV=1;SPV=0.013224;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:351:303,44:171,26:132,18 +chr21 9256341 . A C 0 PASS DP=685;GPV=1;SPV=0.011669;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:338:294,44:174,12:120,32 +chr21 9274592 . C T 0 PASS DP=383;GPV=1;SPV=0.045665;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:170,26:105,19:65,7 +chr21 9299283 . C T 0 PASS DP=354;GPV=1;SPV=0.038165;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:156,27:66,13:90,14 +chr21 9305926 . G T 0 PASS DP=342;GPV=1;SPV=0.020347;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:134,27:57,8:77,19 +chr21 9326950 . C A 0 PASS DP=446;GPV=1;SPV=0.045654;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:194,32:84,13:110,19 +chr21 9328944 . G A 0 PASS DP=630;GPV=1;SPV=0.015144;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:329:291,38:148,20:143,18 +chr21 9329037 . AG A 0 PASS DP=631;GPV=1;SPV=0.040879;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:306:270,36:128,15:142,21 +chr21 9329691 . C T 0 PASS DP=373;GPV=1;SPV=0.025244;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:158,28:74,16:84,12 +chr21 9331823 . G A 0 PASS DP=418;GPV=1;SPV=0.0054958;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:172,38:88,14:84,24 +chr21 9334167 . T A 0 PASS DP=329;GPV=1;SPV=0.013871;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:135,21:79,11:56,10 +chr21 9337628 . TG T 0 PASS DP=380;GPV=1;SPV=0.0087426;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:153,21:83,8:70,13 +chr21 9347197 . G C 0 PASS DP=373;GPV=1;SPV=0.013814;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:180:161,19:77,12:84,7 +chr21 9347982 . C T 0 PASS DP=368;GPV=1;SPV=0.0052863;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:163:142,21:76,13:66,8 +chr21 9353281 . G A 0 PASS DP=377;GPV=1;SPV=0.019565;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:167,24:80,14:87,10 +chr21 9368462 . C G 0 PASS DP=694;GPV=1;SPV=0.001108;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:317:280,37:144,21:136,16 +chr21 9552040 . T TTC 0 PASS DP=119;GPV=1;SPV=0.0053894;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,15:13,6:31,9 +chr21 9574912 . G A 0 PASS DP=249;GPV=1;SPV=0.028127;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:94,19:42,13:52,6 +chr21 9620953 . A T 0 PASS DP=30;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,2:5,5 +chr21 9639066 . G C 0 PASS DP=146;GPV=1;SPV=0.005646;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:20,6:28,7 +chr21 9644737 . C T 0 PASS DP=153;GPV=1;SPV=0.049145;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:26,9:35,6 +chr21 9678565 . G T 0 PASS DP=158;GPV=1;SPV=0.012575;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:20,14:33,2 +chr21 9694517 . A G 0 PASS DP=168;GPV=1;SPV=0.028118;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:71,12:42,5:29,7 +chr21 9711556 . T G 0 PASS DP=146;GPV=1;SPV=0.010944;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:54,18:30,11:24,7 +chr21 9827735 . C CAT 0 PASS DP=153;GPV=1;SPV=0.014449;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:67,11:47,6:20,5 +chr21 9827822 . G A 0 PASS DP=124;GPV=1;SPV=0.0068055;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:34,6:10,5 +chr21 9979543 . C A 0 PASS DP=122;GPV=1;SPV=0.023385;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:27,8:22,7 +chr21 9981274 . TTCTC T 0 PASS DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,3:13,2 +chr21 10036655 . A G 0 PASS DP=149;GPV=1;SPV=0.047815;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:63,15:35,7:28,8 +chr21 10040830 . A AT 0 PASS DP=117;GPV=1;SPV=0.0044758;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:47,16:22,7:25,9 +chr21 10040832 . A T 0 PASS DP=111;GPV=1;SPV=0.0036917;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:33,18:16,8:17,10 +chr21 10124321 . C T 0 PASS DP=110;GPV=1;SPV=0.0029053;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:23,8:14,9 +chr21 10164711 . T A 0 PASS DP=144;GPV=1;SPV=0.00069468;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:58,22:29,11:29,11 +chr21 10168682 . T G 0 PASS DP=107;GPV=1;SPV=0.043117;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:15,3:30,3 +chr21 10271285 . A T 0 PASS DP=26;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:6,2:6,1 +chr21 10330122 . T C 0 PASS DP=298;GPV=1;SPV=0.021272;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:118,19:68,10:50,9 +chr21 10330762 . T A 0 PASS DP=292;GPV=1;SPV=0.03222;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:120,16:56,8:64,8 +chr21 10333904 . C T 0 PASS DP=264;GPV=1;SPV=0.045039;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:106,12:41,6:65,6 +chr21 10342450 . G A 0 PASS DP=416;GPV=1;SPV=0.0081112;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:194,23:97,12:97,11 +chr21 10344221 . C CA 0 PASS DP=250;GPV=1;SPV=0.023036;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:94,23:58,18:36,5 +chr21 10350705 . G GC 0 PASS DP=297;GPV=1;SPV=0.023804;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:117,20:50,8:67,12 +chr21 10357137 . A T 0 PASS DP=303;GPV=1;SPV=0.011177;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:123,20:56,16:67,4 +chr21 10361539 . T A 0 PASS DP=550;GPV=1;SPV=0.046728;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:246:220,26:118,17:102,9 +chr21 10366440 . G C 0 PASS DP=277;GPV=1;SPV=0.040595;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:116,13:44,9:72,4 +chr21 10394018 . G C 0 PASS DP=360;GPV=1;SPV=0.0077177;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:178:146,32:73,19:73,13 +chr21 10397708 . C A 0 PASS DP=209;GPV=1;SPV=4.322e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:76,17:38,7:38,10 +chr21 10419634 . G C 0 PASS DP=476;GPV=1;SPV=0.044991;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:197,36:90,13:107,23 +chr21 10449909 . C A 0 PASS DP=276;GPV=1;SPV=0.016547;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:110,22:53,12:57,10 +chr21 10462375 . A G 0 PASS DP=366;GPV=1;SPV=0.037829;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:150,19:83,11:67,8 +chr21 10462629 . C T 0 PASS DP=380;GPV=1;SPV=0.0016381;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:171,20:83,9:88,11 +chr21 10465468 . G A 0 PASS DP=421;GPV=1;SPV=0.046754;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:198,23:114,15:84,8 +chr21 10474414 . C A 0 PASS DP=300;GPV=1;SPV=0.023699;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:122,15:64,12:58,3 +chr21 10482852 . T C 0 PASS DP=163;GPV=1;SPV=0.031234;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:26,5:34,9 +chr21 10482853 . C A 0 PASS DP=171;GPV=1;SPV=0.023558;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:63,13:27,4:36,9 +chr21 10482863 . C A 0 PASS DP=155;GPV=1;SPV=0.023992;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:58,12:21,3:37,9 +chr21 10488869 . C T 0 PASS DP=347;GPV=1;SPV=0.030335;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:147,18:74,5:73,13 +chr21 10751454 . A C 0 PASS DP=248;GPV=1;SPV=0.046581;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:96,14:49,8:47,6 +chr21 10771684 . C T 0 PASS DP=112;GPV=1;SPV=0.047441;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:26,4:19,5 +chr21 10807251 . T A 0 PASS DP=402;GPV=1;SPV=0.015793;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:149,17:71,12:78,5 +chr21 13044380 . A G 0 PASS DP=42;GPV=1;SPV=0.015516;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,5:7,2 +chr21 13191770 . A G 0 PASS DP=50;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,6:9,3 +chr21 13437082 . A G 0 PASS DP=63;GPV=1;SPV=0.04497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:14,1:13,6 +chr21 16679952 . A G 0 PASS DP=40;GPV=1;SPV=0.0069146;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,4:6,8 +chr21 17174287 . A AT 0 PASS DP=22;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:2,2:3,2 +chr21 17730218 . C G 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,1:4,4 +chr21 18447439 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.016968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,7:4,6:0,1 +chr21 18895938 . TA T 0 PASS DP=28;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:2,4:3,2 +chr21 20226487 . A C 0 PASS DP=43;GPV=1;SPV=0.02842;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:11,4:1,1 +chr21 20522459 . T C 0 PASS DP=54;GPV=1;SPV=0.00019558;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,1:5,7 +chr21 20988674 . AAG A 0 PASS DP=41;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:17,2:3,2 +chr21 20988682 . G A 0 PASS DP=35;GPV=1;SPV=0.07478;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:13,2:1,2 +chr21 21626186 . G T 0 PASS DP=64;GPV=1;SPV=0.019909;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2 +chr21 21717527 . G A 0 PASS DP=40;GPV=1;SPV=0.011427;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,4:10,5 +chr21 21871317 . G GATTATT 0 PASS DP=56;GPV=1;SPV=0.010144;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:11,7:9,6 +chr21 22534971 . C T 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2 +chr21 23733973 . T A 0 PASS DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr21 26379249 . G T 0 PASS DP=31;GPV=1;SPV=0.0043505;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,3:5,4 +chr21 26456629 . C T 0 PASS DP=64;GPV=1;SPV=9.7241e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:7,7:8,8 +chr21 26708933 . A T 0 PASS DP=25;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,2:0,1:2,1 +chr21 27001299 . G A 0 PASS DP=58;GPV=1;SPV=0.029816;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,1:12,3 +chr21 28136090 . G GGTGTGTGTGTGTGTGT 0 PASS DP=39;GPV=1;SPV=0.00756;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,4:6,3 +chr21 28300178 . TTATG T 0 PASS DP=47;GPV=1;SPV=0.021726;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,4:9,5 +chr21 28381248 . G T 0 PASS DP=63;GPV=1;SPV=4.0536e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5 +chr21 29614402 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.027772;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,3:3,2 +chr21 30807295 . GAA G 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,2:4,2 +chr21 30877015 . T TTTA 0 PASS DP=57;GPV=1;SPV=0.032025;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3 +chr21 31112171 . GTA G 0 PASS DP=47;GPV=1;SPV=0.04242;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,4:7,2 +chr21 31871338 . GTT G 0 PASS DP=26;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:2,1:4,5 +chr21 32361159 . A AG 0 PASS DP=36;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,5:3,4:3,1 +chr21 33222900 . GTTT G 0 PASS DP=21;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,3:0,1 +chr21 34239300 . CAA C 0 PASS DP=27;GPV=1;SPV=0.0030029;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,7:0,4:1,3 +chr21 34716857 . C A 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,3:5,2 +chr21 34716859 . CTA C 0 PASS DP=24;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:2,3:4,3 +chr21 34716862 . T A 0 PASS DP=20;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,5:1,3:0,2 +chr21 35851420 . T A 0 PASS DP=55;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:6,3:2,1:4,2 +chr21 35894301 . C CA 0 PASS DP=53;GPV=1;SPV=0.0018592;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:7,5:3,3 +chr21 36253637 . C CAAA 0 PASS DP=34;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,8:2,5:3,3 +chr21 37207080 . A C 0 PASS DP=64;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:24:0,2:0,1:0,1 +chr21 37859532 . A T 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr21 38194194 . G T 0 PASS DP=49;GPV=1;SPV=7.8688e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:3,7:9,3 +chr21 38548833 . G A 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,4:1,2 +chr21 38793515 . C CTTT 0 PASS DP=25;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:8,2:1,2 +chr21 39799261 . C T 0 PASS DP=63;GPV=1;SPV=4.1561e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,4:5,6 +chr21 41041820 . A G 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,2:1,2 +chr21 41840442 . CA C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,3:1,1 +chr21 42346244 . ATACACACACCCATACATGGG A 0 PASS DP=69;GPV=1;SPV=0.037555;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,2:10,6 +chr21 43704220 . C CAAAAAA 0 PASS DP=27;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:10,4:1,0 +chr21 44925422 . G A 0 PASS DP=20;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,3:3,2:0,1 +chr22 10637080 . G A 0 PASS DP=118;GPV=1;SPV=0.010072;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:41,16:8,3:33,13 +chr22 10641564 . G GAA 0 PASS DP=60;GPV=1;SPV=0.021777;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:10,5:8,4 +chr22 10641581 . TGA T 0 PASS DP=59;GPV=1;SPV=0.010612;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:7,4:13,1 +chr22 10692496 . G A 0 PASS DP=237;GPV=1;SPV=0.022732;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:92,21:37,8:55,13 +chr22 10704261 . A AAT 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr22 10704718 . GTA G 0 PASS DP=39;GPV=1;SPV=0.011954;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,4:5,4 +chr22 10704757 . TAG T 0 PASS DP=39;GPV=1;SPV=0.014881;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,2:6,3 +chr22 10725297 . G A 0 PASS DP=95;GPV=1;SPV=0.036569;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,3:15,6 +chr22 10733494 . C T 0 PASS DP=654;GPV=1;SPV=0.0082194;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:269,41:128,23:141,18 +chr22 10738815 . T TTTATTTAAC 0 PASS DP=301;GPV=1;SPV=0.035028;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:45,11:19,7:26,4 +chr22 10742869 . T C 0 PASS DP=287;GPV=1;SPV=0.046361;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:120,14:56,5:64,9 +chr22 10745438 . A T 0 PASS DP=200;GPV=1;SPV=0.015051;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:90,25:29,5:61,20 +chr22 10757234 . T G 0 PASS DP=224;GPV=1;SPV=0.033479;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:95,11:36,6:59,5 +chr22 10768778 . G A 0 PASS DP=346;GPV=1;SPV=0.038236;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:162,19:78,12:84,7 +chr22 10768787 . A G 0 PASS DP=366;GPV=1;SPV=0.026932;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:167,19:79,9:88,10 +chr22 10780500 . G A 0 PASS DP=389;GPV=1;SPV=0.046874;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:169,28:73,12:96,16 +chr22 10936194 . C CAGAGT 0 PASS DP=450;GPV=1;SPV=0.013438;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:186,26:106,14:80,12 +chr22 11024987 . T C 0 PASS DP=338;GPV=1;SPV=0.0014037;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:153,21:109,16:44,5 +chr22 11025062 . C T 0 PASS DP=399;GPV=1;SPV=0.00012916;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:179,33:112,23:67,10 +chr22 11036904 . T A 0 PASS DP=460;GPV=1;SPV=0.006115;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:230:202,28:119,18:83,10 +chr22 11040365 . C T 0 PASS DP=349;GPV=1;SPV=0.015116;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:152,21:69,15:83,6 +chr22 11047471 . T A 0 PASS DP=306;GPV=1;SPV=0.025476;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:128,17:64,9:64,8 +chr22 11066917 . G A 0 PASS DP=201;GPV=1;SPV=0.032266;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:74,16:35,7:39,9 +chr22 11287400 . A G 0 PASS DP=163;GPV=1;SPV=0.037475;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:35,9:29,8 +chr22 11364835 . A G 0 PASS DP=111;GPV=1;SPV=0.02202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:16,6:19,6 +chr22 11495194 . G A 0 PASS DP=106;GPV=1;SPV=0.005134;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:13,9:23,7 +chr22 11621493 . C T 0 PASS DP=97;GPV=1;SPV=0.037288;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:20,6:13,5 +chr22 11714661 . C T 0 PASS DP=102;GPV=1;SPV=0.021226;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:14,5:24,5 +chr22 11823982 . A G 0 PASS DP=47;GPV=1;SPV=0.013266;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,3:9,2 +chr22 11855605 . G T 0 PASS DP=181;GPV=1;SPV=0.043506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:51,13:25,3 +chr22 11862800 . G T 0 PASS DP=206;GPV=1;SPV=0.038968;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:93,16:50,9:43,7 +chr22 11862849 . C T 0 PASS DP=151;GPV=1;SPV=0.041357;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:66,10:29,5:37,5 +chr22 11871637 . T C 0 PASS DP=580;GPV=1;SPV=0.012813;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:246,29:141,17:105,12 +chr22 11904955 . T G 0 PASS DP=144;GPV=1;SPV=0.044719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:55,8:28,1:27,7 +chr22 11906013 . C A 0 PASS DP=373;GPV=1;SPV=0.042615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:141,28:32,3:109,25 +chr22 11916341 . G A 0 PASS DP=474;GPV=1;SPV=0.010093;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:205,34:118,20:87,14 +chr22 11926837 . C T 0 PASS DP=410;GPV=1;SPV=0.031884;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:163,29:38,3:125,26 +chr22 11929811 . T C 0 PASS DP=551;GPV=1;SPV=0.021314;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:221,40:107,18:114,22 +chr22 11935421 . G A 0 PASS DP=275;GPV=1;SPV=0.0017406;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,14:73,11:39,3 +chr22 11946538 . G GAA 0 PASS DP=104;GPV=1;SPV=0.026942;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,9:30,8:5,1 +chr22 11949347 . C T 0 PASS DP=172;GPV=1;SPV=0.036639;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:77,17:46,11:31,6 +chr22 11973396 . G A 0 PASS DP=157;GPV=1;SPV=0.043449;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:48,9:21,5 +chr22 11975335 . G A 0 PASS DP=195;GPV=1;SPV=0.00066233;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:77,21:36,10:41,11 +chr22 11976021 . T C 0 PASS DP=96;GPV=1;SPV=0.024323;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:20,2:16,6 +chr22 12042814 . C A 0 PASS DP=169;GPV=1;SPV=0.045055;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:66,11:22,4:44,7 +chr22 12053499 . C T 0 PASS DP=353;GPV=1;SPV=0.025521;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:155,18:95,8:60,10 +chr22 12054125 . C T 0 PASS DP=180;GPV=1;SPV=0.042478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:75,14:40,6:35,8 +chr22 12055223 . A T 0 PASS DP=291;GPV=1;SPV=0.0081715;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:106,22:57,19:49,3 +chr22 12070159 . G T 0 PASS DP=287;GPV=1;SPV=0.0082858;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:122,21:67,7:55,14 +chr22 12118918 . A C 0 PASS DP=374;GPV=1;SPV=0.00066572;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:145,28:76,11:69,17 +chr22 12126384 . G GT 0 PASS DP=75;GPV=1;SPV=0.046917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,7:9,4:16,3 +chr22 12138060 . G T 0 PASS DP=285;GPV=1;SPV=0.0057945;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:151:126,24:67,13:59,11 +chr22 12150001 . G T 0 PASS DP=179;GPV=1;SPV=0.033633;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:78,12:62,4:16,8 +chr22 12152289 . G A 0 PASS DP=61;GPV=1;SPV=0.025903;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,6:9,1 +chr22 12159672 . A C 0 PASS DP=267;GPV=1;SPV=0.014775;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:116,13:72,10:44,3 +chr22 12182241 . A G 0 PASS DP=34;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr22 12193370 . G A 0 PASS DP=228;GPV=1;SPV=0.01726;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:94,23:53,9:41,14 +chr22 12208767 . A C 0 PASS DP=138;GPV=1;SPV=0.015315;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:59,10:32,3:27,7 +chr22 12217959 . G A 0 PASS DP=200;GPV=1;SPV=0.0076748;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:49,6:23,4 +chr22 12293433 . CTCTCTT C 0 PASS DP=71;GPV=1;SPV=0.038142;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:5,1:19,4 +chr22 12338166 . T C 0 PASS DP=65;GPV=1;SPV=0.026058;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,7:7,3 +chr22 12338858 . G T 0 PASS DP=48;GPV=1;SPV=0.036132;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,2:8,6 +chr22 12352720 . C T 0 PASS DP=56;GPV=1;SPV=0.027873;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,9:11,1 +chr22 12431738 . C G 0 PASS DP=147;GPV=1;SPV=0.013069;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:33,10:25,5 +chr22 12541176 . T C 0 PASS DP=137;GPV=1;SPV=0.030792;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:30,7:20,6 +chr22 12551706 . T A 0 PASS DP=170;GPV=1;SPV=0.043922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:38,7:35,8 +chr22 12576500 . GA G 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:2,1:10,4 +chr22 12621083 . TA T 0 PASS DP=264;GPV=1;SPV=0.009217;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:109,13:45,3:64,10 +chr22 12637618 . A AAGAGGGAAGGAAGGAG 0 PASS DP=31;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:5,6:2,2 +chr22 12722614 . G A 0 PASS DP=40;GPV=1;SPV=0.042412;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr22 12726017 . G A 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr22 12885931 . G C 0 PASS DP=108;GPV=1;SPV=0.0083841;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:13,6:21,5 +chr22 12891801 . C T 0 PASS DP=118;GPV=1;SPV=0.024305;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:17,2:33,5 +chr22 15238437 . G A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:9,3:0,2 +chr22 15479128 . A G 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:3,2:11,2 +chr22 15554780 . C T 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chr22 15599675 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1 +chr22 15668211 . C T 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:13,4:10,2 +chr22 15669498 . G A 0 PASS DP=145;GPV=1;SPV=0.0061689;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:63,18:42,12:21,6 +chr22 15721882 . G C 0 PASS DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:7,4:10,1 +chr22 15724410 . C T 0 PASS DP=29;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr22 15775220 . A AGC 0 PASS DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:7,5:6,4 +chr22 15824122 . T TAAAAAA 0 PASS DP=31;GPV=1;SPV=0.010876;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,5:2,1 +chr22 15833634 . T A 0 PASS DP=78;GPV=1;SPV=0.015588;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,4:15,4 +chr22 15854667 . A G 0 PASS DP=225;GPV=1;SPV=0.033997;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:105,15:44,7:61,8 +chr22 15859621 . A C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr22 15880756 . A C 0 PASS DP=31;GPV=1;SPV=0.025213;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:5,3:7,3 +chr22 15941337 . T A 0 PASS DP=64;GPV=1;SPV=0.03636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:15,7:5,1 +chr22 15941749 . C A 0 PASS DP=29;GPV=1;SPV=0.015535;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,5:4,4 +chr22 16396135 . C CAA 0 PASS DP=56;GPV=1;SPV=0.012544;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,7:10,2:8,5 +chr22 16420748 . G T 0 PASS DP=147;GPV=1;SPV=0.0014424;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:26,3:37,9 +chr22 16437552 . G T 0 PASS DP=108;GPV=1;SPV=0.049303;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:23,3:23,7 +chr22 17292166 . G GT 0 PASS DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,2:1,2 +chr22 17399416 . AT A 0 PASS DP=31;GPV=1;SPV=0.013985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,8:4,2 +chr22 17717380 . C A 0 PASS DP=17;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,3:2,1:2,2 +chr22 17721492 . G GT 0 PASS DP=31;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,6:2,2 +chr22 17982716 . A AT 0 PASS DP=54;GPV=1;SPV=0.0052744;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,2:10,7 +chr22 18373376 . A C 0 PASS DP=128;GPV=1;SPV=0.036466;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:32,7:19,6 +chr22 18538824 . A C 0 PASS DP=35;GPV=1;SPV=0.018501;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,2:4,3 +chr22 18551267 . G A 0 PASS DP=50;GPV=1;SPV=0.020061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,2:6,3 +chr22 18736176 . C A 0 PASS DP=41;GPV=1;SPV=0.083787;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:3,1:19,5 +chr22 18846304 . A C 0 PASS DP=95;GPV=1;SPV=0.0268;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:10,4:22,6 +chr22 19959866 . G T 0 PASS DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,3:7,3 +chr22 20330019 . A G 0 PASS DP=97;GPV=1;SPV=0.035027;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:26,7:20,1 +chr22 20518070 . T TGACATTGACGTGAGGGACTGCCATAATGCGTC 0 PASS DP=39;GPV=1;SPV=0.038176;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:4,3:5,1 +chr22 21114146 . G A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,3:2,1 +chr22 21128721 . GC G 0 PASS DP=55;GPV=1;SPV=0.024966;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:16,5:2,3 +chr22 21128840 . A C 0 PASS DP=49;GPV=1;SPV=0.043201;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:1,2:17,4 +chr22 21149908 . T TC 0 PASS DP=64;GPV=1;SPV=0.064403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:10,1:19,3 +chr22 21166157 . G A 0 PASS DP=39;GPV=1;SPV=0.017609;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,1:7,6 +chr22 21254316 . A AT 0 PASS DP=122;GPV=1;SPV=0.03249;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:49,10:14,1:35,9 +chr22 21274874 . C G 0 PASS DP=111;GPV=1;SPV=0.0033913;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:38,17:30,13:8,4 +chr22 21275550 . C T 0 PASS DP=133;GPV=1;SPV=0.0065321;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:25,4:28,9 +chr22 21278152 . G C 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr22 21289816 . G A 0 PASS DP=82;GPV=1;SPV=0.033362;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:10,4:21,6 +chr22 21307922 . G A 0 PASS DP=104;GPV=1;SPV=0.025948;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,8:14,2 +chr22 21319485 . G A 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:15,3:2,1 +chr22 21319702 . T A 0 PASS DP=62;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:10,1:17,7 +chr22 21354436 . T C 0 PASS DP=47;GPV=1;SPV=0.020715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,3:0,3 +chr22 21842359 . C T 0 PASS DP=37;GPV=1;SPV=0.0045922;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:3,2:4,6 +chr22 24651910 . TC T 0 PASS DP=137;GPV=1;SPV=0.0061914;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:44,7:13,2 +chr22 24670041 . G A 0 PASS DP=68;GPV=1;SPV=0.036165;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:12,4:19,1 +chr22 25547404 . T TAC 0 PASS DP=42;GPV=1;SPV=0.005974;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:8,6:2,3 +chr22 26457209 . A AC 0 PASS DP=35;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,2:7,4 +chr22 31114516 . C CA 0 PASS DP=32;GPV=1;SPV=0.0077765;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,4:3,3 +chr22 31402505 . C CT 0 PASS DP=21;GPV=1;SPV=0.0048821;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,7:1,6:1,1 +chr22 32368193 . C CAA 0 PASS DP=44;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3 +chr22 32447607 . C CTT 0 PASS DP=27;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,6:2,2 +chr22 33661217 . A ATT 0 PASS DP=37;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,7:1,1 +chr22 33774546 . G C 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,1:4,3 +chr22 33836842 . C T 0 PASS DP=61;GPV=1;SPV=9.9789e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:7,6:8,6 +chr22 34331129 . C T 0 PASS DP=58;GPV=1;SPV=1.6305e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:5,10:6,6 +chr22 35428023 . T C 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,7:5,2 +chr22 36860650 . A G 0 PASS DP=73;GPV=1;SPV=8.6742e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:5,8:11,14 +chr22 37098038 . C CG 0 PASS DP=49;GPV=1;SPV=0.010062;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,3:2,3 +chr22 38067307 . C CTT 0 PASS DP=24;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,5:5,1 +chr22 39121584 . G A 0 PASS DP=44;GPV=1;SPV=0.012526;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:11,4:8,4 +chr22 39341345 . T C 0 PASS DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,7:6,6 +chr22 41637962 . T TAA 0 PASS DP=25;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:2,4:2,1 +chr22 41649160 . A G 0 PASS DP=26;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,3:6,2 +chr22 42731960 . C CT 0 PASS DP=30;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,4:4,6 +chr22 43087837 . C CAA 0 PASS DP=37;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:9,6:7,2 +chr22 43905254 . C G 0 PASS DP=75;GPV=1;SPV=0.038866;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,1:13,7 +chr22 44767339 . T C 0 PASS DP=52;GPV=1;SPV=0.00035142;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:4,4:7,5 +chr22 45222632 . G A 0 PASS DP=33;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:5,1:13,3 +chr22 45929864 . C CCATTCATA 0 PASS DP=44;GPV=1;SPV=0.0075035;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:4,4:6,4 +chr22 45929922 . TCCCATCCA T 0 PASS DP=41;GPV=1;SPV=0.030216;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr22 47414863 . ATTTT A 0 PASS DP=42;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,4:3,3:5,1 +chr22 47765875 . G A 0 PASS DP=44;GPV=1;SPV=0.0054908;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,4:7,2 +chr22 48788140 . AT A 0 PASS DP=37;GPV=1;SPV=0.030571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,1:6,4 +chr22 48950976 . A G 0 PASS DP=57;GPV=1;SPV=0.00037903;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:10,5:11,8 +chr22 49167163 . A C 0 PASS DP=29;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:0,0:7,2 +chr22 49489523 . G C 0 PASS DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,5:7,1 +chr22 49686911 . G A 0 PASS DP=36;GPV=1;SPV=0.051948;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chr22 49728793 . GGAGAGCCGGACACCCGGGAGAGCCGGACACCCGA G 0 PASS DP=57;GPV=1;SPV=0.037309;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,1:6,4 +chr22 49973519 . ATGTGTGGTG A 0 PASS DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr22 50029417 . A C 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chr3 599741 . AT A 0 PASS DP=133;GPV=1;SPV=0.034435;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:13,4:31,7 +chr3 1753287 . A T 0 PASS DP=48;GPV=1;SPV=0.0015793;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,3:8,4 +chr3 3699388 . CAAAAA C 0 PASS DP=33;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,7:8,6:2,1 +chr3 4258814 . A G 0 PASS DP=41;GPV=1;SPV=0.028271;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,1:4,5 +chr3 4843074 . G GT 0 PASS DP=25;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr3 5247207 . A C 0 PASS DP=22;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,2:0,1:0,1 +chr3 5304516 . A C 0 PASS DP=67;GPV=1;SPV=0.078413;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,4:15,1:14,3 +chr3 6341515 . A G 0 PASS DP=62;GPV=1;SPV=0.021877;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:12,4:16,2 +chr3 6341516 . C T 0 PASS DP=61;GPV=1;SPV=0.054568;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,4:18,1 +chr3 6814474 . C T 0 PASS DP=62;GPV=1;SPV=0.00018629;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,5:10,5 +chr3 7566110 . T G 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:0,0:1,2 +chr3 7566111 . T G 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:0,0:1,2 +chr3 8238775 . C CT 0 PASS DP=28;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:3,2:2,3 +chr3 9406607 . C CAAAAAA 0 PASS DP=45;GPV=1;SPV=0.0057147;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:9,9:4,2 +chr3 9479221 . CAAAAAA C 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:9,5:4,1 +chr3 9498203 . CTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:2,6:1,1 +chr3 10968336 . G A 0 PASS DP=56;GPV=1;SPV=0.040704;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,1:12,3 +chr3 11183855 . C CT 0 PASS DP=19;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,3:1,1 +chr3 11404125 . AT A 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr3 12778813 . C CA 0 PASS DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,3:3,2 +chr3 14665263 . A G 0 PASS DP=56;GPV=1;SPV=0.014744;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,9:9,7:8,2 +chr3 17775993 . G A 0 PASS DP=49;GPV=1;SPV=0.043201;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,4:6,2 +chr3 20738988 . T TACACACAC 0 PASS DP=31;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:3,2:2,3 +chr3 20954140 . A ATTTTT 0 PASS DP=32;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:2,2:3,4 +chr3 22686547 . G T 0 PASS DP=45;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,2:3,1:1,1 +chr3 23988023 . C CTCCTTCCTTCCTTCCT 0 PASS DP=30;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3 +chr3 25053747 . T A 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:9,5:12,4 +chr3 26591051 . C T 0 PASS DP=51;GPV=1;SPV=0.0001095;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:8,6:7,6 +chr3 26826129 . CT C 0 PASS DP=20;GPV=1;SPV=0.0044376;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,5:1,1 +chr3 26963139 . C A 0 PASS DP=45;GPV=1;SPV=0.0065711;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:4,8:9,4 +chr3 26987052 . C CAA 0 PASS DP=36;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,6:4,1 +chr3 27063816 . C T 0 PASS DP=57;GPV=1;SPV=2.7872e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,18:6,7:6,11 +chr3 32300976 . T A 0 PASS DP=57;GPV=1;SPV=0.01494;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,8:3,5:9,3 +chr3 32573362 . C CT 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr3 32787355 . C CA 0 PASS DP=31;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:2,4:5,2 +chr3 33296682 . G A 0 PASS DP=60;GPV=1;SPV=1.3134e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:10,7:6,6 +chr3 35443151 . G A 0 PASS DP=57;GPV=1;SPV=5.7929e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:7,8:4,6 +chr3 35985014 . G GT 0 PASS DP=43;GPV=1;SPV=0.0023186;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,7:9,2 +chr3 36699022 . C G 0 PASS DP=64;GPV=1;SPV=2.6443e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:10,4:9,9 +chr3 37305094 . T G 0 PASS DP=58;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:14,2:11,4 +chr3 39232485 . C A 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,2:10,2 +chr3 39560325 . G A 0 PASS DP=69;GPV=1;SPV=1.4901e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:7,10:13,9 +chr3 40462373 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,2:5,2 +chr3 41012356 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,4:3,2 +chr3 42412362 . GA G 0 PASS DP=35;GPV=1;SPV=0.013803;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:11,5:1,1 +chr3 42483212 . C CA 0 PASS DP=43;GPV=1;SPV=0.0091334;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:5,4:3,3 +chr3 42655741 . A G 0 PASS DP=63;GPV=1;SPV=6.8268e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:13,6:6,12 +chr3 43322951 . C CAAAAAAAA 0 PASS DP=18;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:2,2:3,2 +chr3 44846771 . CA C 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,5:3,1 +chr3 44966036 . G A 0 PASS DP=54;GPV=1;SPV=0.028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2 +chr3 45350184 . C T 0 PASS DP=56;GPV=1;SPV=9.294e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:8,6:9,6 +chr3 46654156 . C A 0 PASS DP=46;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:0,6:0,4:0,2 +chr3 47529887 . T TA 0 PASS DP=37;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,2:6,3 +chr3 50142006 . T TTTTC 0 PASS DP=28;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:1,3:7,2 +chr3 50190920 . G GAA 0 PASS DP=27;GPV=1;SPV=0.022476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:9,5:0,3 +chr3 51774593 . TAGAG T 0 PASS DP=21;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,3:0,2 +chr3 53520894 . CT C 0 PASS DP=44;GPV=1;SPV=0.0016587;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:1,3:5,4 +chr3 53520902 . TTC T 0 PASS DP=49;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,7:6,3:5,4 +chr3 54318693 . C CT 0 PASS DP=24;GPV=1;SPV=0.013124;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:6,5:1,3 +chr3 54660143 . CT C 0 PASS DP=39;GPV=1;SPV=0.0012644;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,4:5,3 +chr3 55388463 . G T 0 PASS DP=16;GPV=1;SPV=0.025058;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,5:0,1:1,4 +chr3 58228101 . CAAATAAAT C 0 PASS DP=38;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:4,6:9,4 +chr3 58990754 . G GGTGTGT 0 PASS DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:15,3:7,3 +chr3 59166836 . A C 0 PASS DP=58;GPV=1;SPV=0.055981;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,2:13,2 +chr3 60483824 . C T 0 PASS DP=60;GPV=1;SPV=0.00029085;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:10,9:13,6 +chr3 63198755 . G GTATA 0 PASS DP=33;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,4:8,2:7,2 +chr3 64128743 . CA C 0 PASS DP=28;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,7:1,1 +chr3 64456467 . G A 0 PASS DP=46;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:8,11:10,7 +chr3 64791797 . G A 0 PASS DP=57;GPV=1;SPV=0.0098124;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,3:7,1 +chr3 64899720 . T TATACATATATATATATAC 0 PASS DP=27;GPV=1;SPV=0.018803;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1 +chr3 65621917 . T TCACACACACACACACA 0 PASS DP=33;GPV=1;SPV=0.024789;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,3:5,2 +chr3 66882631 . CT C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr3 67782427 . G GTT 0 PASS DP=27;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,2:3,2 +chr3 69366062 . C A 0 PASS DP=39;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,2:3,1:2,1 +chr3 71147019 . C A 0 PASS DP=64;GPV=1;SPV=0.00061107;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,3:10,7 +chr3 71632297 . A AACACACACACAC 0 PASS DP=41;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:8,3:11,2 +chr3 72908239 . C T 0 PASS DP=65;GPV=1;SPV=3.4009e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:8,12:10,4 +chr3 73205094 . AAG A 0 PASS DP=31;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:4,4:0,2 +chr3 73241254 . A G 0 PASS DP=48;GPV=1;SPV=0.1592;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,4:5,3:8,1 +chr3 73424541 . CA C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr3 75186856 . C A 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,3:14,1 +chr3 75358988 . T C 0 PASS DP=37;GPV=1;SPV=0.037397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,5:9,2 +chr3 75580890 . T G 0 PASS DP=34;GPV=1;SPV=0.015698;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,2:6,3 +chr3 75775340 . TTAAAG T 0 PASS DP=119;GPV=1;SPV=0.027384;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:13,7:32,6 +chr3 75854035 . A G 0 PASS DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:23,2:10,3 +chr3 76028843 . G T 0 PASS DP=69;GPV=1;SPV=5.5134e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,5:8,4 +chr3 76579786 . CA C 0 PASS DP=21;GPV=1;SPV=0.0022624;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:1,7:1,2 +chr3 76834020 . T TTCTC 0 PASS DP=53;GPV=1;SPV=0.013481;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,1:11,6 +chr3 77112487 . G A 0 PASS DP=64;GPV=1;SPV=0.00013223;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,7:7,3 +chr3 77565112 . G A 0 PASS DP=54;GPV=1;SPV=0.053727;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,2:13,3 +chr3 77787423 . G GTT 0 PASS DP=28;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:4,3:3,1 +chr3 79953852 . G A 0 PASS DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,9:11,2 +chr3 80399093 . C A 0 PASS DP=57;GPV=1;SPV=1.3529e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,6:7,5 +chr3 81149010 . A AT 0 PASS DP=21;GPV=1;SPV=0.031623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,3:2,3 +chr3 81604286 . C T 0 PASS DP=27;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,3:3,1:1,2 +chr3 81813389 . AAAATAAATAAAT A 0 PASS DP=38;GPV=1;SPV=0.02545;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,3:7,4 +chr3 82905562 . G C 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,3:12,1 +chr3 83640202 . A C 0 PASS DP=52;GPV=1;SPV=0.0005553;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,5:7,4 +chr3 86420996 . A C 0 PASS DP=48;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,2:1,1:2,1 +chr3 89218869 . T G 0 PASS DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,3:6,3 +chr3 90542825 . C T 0 PASS DP=53;GPV=1;SPV=4.45e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:7,5:8,8 +chr3 90821830 . C T 0 PASS DP=288;GPV=1;SPV=0.029015;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:115,20:59,10:56,10 +chr3 90844475 . A T 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr3 90874407 . A G 0 PASS DP=106;GPV=1;SPV=0.0072124;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:6,3:30,4 +chr3 90889587 . G C 0 PASS DP=248;GPV=1;SPV=0.012149;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:91,12:34,4:57,8 +chr3 90904737 . C T 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr3 90916593 . C A 0 PASS DP=266;GPV=1;SPV=0.010902;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:113,15:8,1:105,14 +chr3 91018055 . C A 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:30,4:0,0 +chr3 91081678 . C T 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0 +chr3 91161022 . A C 0 PASS DP=46;GPV=1;SPV=0.043019;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr3 91185920 . T A 0 PASS DP=40;GPV=1;SPV=0.19203;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:19,3:4,1 +chr3 91189955 . C G 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr3 91257470 . C T 0 PASS DP=84;GPV=1;SPV=0.045541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:13,1:25,6 +chr3 91740897 . C G 0 PASS DP=26;GPV=1;SPV=0.086154;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr3 92488894 . A T 0 PASS DP=175;GPV=1;SPV=0.043273;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:67,17:51,13:16,4 +chr3 94791475 . A G 0 PASS DP=52;GPV=1;SPV=0.00042492;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:3,4:11,4 +chr3 95459522 . C T 0 PASS DP=59;GPV=1;SPV=4.9559e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8 +chr3 96621733 . C T 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr3 96994734 . G T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr3 96994736 . G T 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr3 98305488 . C CTTTT 0 PASS DP=37;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:5,4:15,1 +chr3 98743000 . CT C 0 PASS DP=19;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,4:1,2 +chr3 98838182 . C T 0 PASS DP=51;GPV=1;SPV=0.011145;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:9,2:10,4 +chr3 98948536 . AT A 0 PASS DP=46;GPV=1;SPV=0.0021725;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,6:4,1 +chr3 99135180 . A ATGTG 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,2:6,3 +chr3 102971951 . T A 0 PASS DP=64;GPV=1;SPV=0.0004122;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,9:15,4 +chr3 103451785 . T G 0 PASS DP=49;GPV=1;SPV=0.21888;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,3:17,1 +chr3 103701026 . C A 0 PASS DP=61;GPV=1;SPV=1.8239e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,9:11,4 +chr3 104124799 . T A 0 PASS DP=62;GPV=1;SPV=7.0073e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,21:8,11:3,10 +chr3 109426843 . TTTATGTTATGTTATGTTATG T 0 PASS DP=43;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:6,4:6,4 +chr3 109666693 . T A 0 PASS DP=60;GPV=1;SPV=0.048707;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3 +chr3 110636095 . G C 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,1:14,3 +chr3 111834081 . T A 0 PASS DP=51;GPV=1;SPV=0.046888;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:9,3:8,4 +chr3 111960171 . A T 0 PASS DP=69;GPV=1;SPV=0.0046174;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,6:13,2 +chr3 113687229 . T TCA 0 PASS DP=37;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,8:2,5:1,3 +chr3 113887096 . G T 0 PASS DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,4:6,1:3,3 +chr3 114188210 . CT C 0 PASS DP=29;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr3 114901265 . C CA 0 PASS DP=40;GPV=1;SPV=0.028936;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:8,3:5,1 +chr3 116009264 . G T 0 PASS DP=55;GPV=1;SPV=0.031156;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,1:11,3 +chr3 118566043 . TGTATATAC T 0 PASS DP=56;GPV=1;SPV=0.014357;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,5:10,5 +chr3 118717750 . T G 0 PASS DP=48;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:6,4:15,2 +chr3 119495392 . C T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,2:5,7 +chr3 119662181 . A G 0 PASS DP=28;GPV=1;SPV=0.013462;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:3,2:1,1 +chr3 120262175 . C CTT 0 PASS DP=38;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,7:4,6:1,1 +chr3 120849637 . CT C 0 PASS DP=45;GPV=1;SPV=0.0022747;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,5:6,3 +chr3 121160238 . C A 0 PASS DP=45;GPV=1;SPV=6.9497e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:3,4:8,7 +chr3 121337439 . T TA 0 PASS DP=29;GPV=1;SPV=0.0055395;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,4:2,2 +chr3 124602945 . T TG 0 PASS DP=45;GPV=1;SPV=0.029987;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,4:6,3 +chr3 124643006 . A G 0 PASS DP=40;GPV=1;SPV=0.021089;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,8:9,3 +chr3 125198780 . AT A 0 PASS DP=64;GPV=1;SPV=0.00028624;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,16:12,13:6,3 +chr3 125768878 . C T 0 PASS DP=57;GPV=1;SPV=0.021683;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:7,3:9,2 +chr3 125866707 . T C 0 PASS DP=45;GPV=1;SPV=5.4866e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,4:4,5 +chr3 129752683 . A C 0 PASS DP=53;GPV=1;SPV=0.00014234;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:6,3:11,10 +chr3 130198260 . T C 0 PASS DP=79;GPV=1;SPV=0.043405;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:9,5:20,2 +chr3 132150603 . C CTGTGTG 0 PASS DP=39;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:1,2:9,3 +chr3 135266599 . C A 0 PASS DP=52;GPV=1;SPV=4.0875e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:7,6:5,4 +chr3 136376016 . C CAAAATAAAATAAAATAAAATAAAAT 0 PASS DP=29;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:4,3:3,2 +chr3 136769449 . C CAA 0 PASS DP=31;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:5,5:3,1 +chr3 138848087 . C T 0 PASS DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,5:9,5 +chr3 138925482 . C CTTT 0 PASS DP=49;GPV=1;SPV=0.018165;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:9,7:6,2 +chr3 139689042 . AAC A 0 PASS DP=64;GPV=1;SPV=0.056596;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chr3 139842941 . G A 0 PASS DP=55;GPV=1;SPV=0.0034822;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,3:8,3 +chr3 142575468 . CAAA C 0 PASS DP=33;GPV=1;SPV=0.018626;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:7,5:2,2 +chr3 145109442 . T A 0 PASS DP=61;GPV=1;SPV=2.4769e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:12,22:4,12:8,10 +chr3 145963953 . C CT 0 PASS DP=28;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,4:4,3 +chr3 146283181 . A AT 0 PASS DP=43;GPV=1;SPV=4.818e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,6:3,4 +chr3 147816087 . A G 0 PASS DP=73;GPV=1;SPV=6.2767e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:13,9:12,4 +chr3 148411385 . C T 0 PASS DP=36;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:8,3:5,1 +chr3 148542106 . G A 0 PASS DP=18;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,3:3,2:2,1 +chr3 148542139 . T G 0 PASS DP=17;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:2,1:2,3 +chr3 150717139 . C A 0 PASS DP=38;GPV=1;SPV=0.039412;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:5,4:4,2 +chr3 151237366 . T C 0 PASS DP=24;GPV=1;SPV=0.004995;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,4:0,1:1,3 +chr3 151993951 . T TA 0 PASS DP=16;GPV=1;SPV=0.009324;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:1,2:1,4 +chr3 152249646 . G A 0 PASS DP=64;GPV=1;SPV=0.00073638;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:15,6:12,8 +chr3 152989471 . C CT 0 PASS DP=35;GPV=1;SPV=0.0091398;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:3,4:3,3 +chr3 153642273 . G GGAA 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,3:6,4 +chr3 154579355 . GA G 0 PASS DP=43;GPV=1;SPV=0.0036547;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,3:2,4 +chr3 155772772 . C CTGTGTG 0 PASS DP=34;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:4,3:0,2 +chr3 158194690 . C A 0 PASS DP=17;GPV=1;SPV=0.012217;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:1,5:1,2 +chr3 160681400 . G A 0 PASS DP=52;GPV=1;SPV=0.024803;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,3:13,4 +chr3 161038233 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,5:3,4:2,1 +chr3 162307799 . CT C 0 PASS DP=24;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,3:1,2 +chr3 162939987 . T G 0 PASS DP=35;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,3:2,3 +chr3 163161129 . T TTTGTA 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,1:6,3 +chr3 163425777 . G A 0 PASS DP=21;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:3,1:2,1 +chr3 163650440 . T A 0 PASS DP=67;GPV=1;SPV=5.9166e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:10,8:11,4 +chr3 163770821 . C A 0 PASS DP=61;GPV=1;SPV=4.7123e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,4:6,5 +chr3 164942602 . C CT 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,3:2,1 +chr3 165084198 . A T 0 PASS DP=59;GPV=1;SPV=0.019456;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,1:8,3 +chr3 165134330 . CA C 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,3:0,1 +chr3 165187211 . A AGTGT 0 PASS DP=45;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:12,6:3,2 +chr3 166465218 . T A 0 PASS DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:12,2:18,2 +chr3 167300610 . T C 0 PASS DP=36;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,4:8,1:2,3 +chr3 167894972 . G A 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2 +chr3 169237636 . T A 0 PASS DP=24;GPV=1;SPV=0.35217;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,2:3,2 +chr3 170424039 . G A 0 PASS DP=44;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,4:4,1:4,3 +chr3 170775875 . C A 0 PASS DP=68;GPV=1;SPV=2.8276e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:8,8:10,14 +chr3 171656156 . T TTTTATTTATTTATTTA 0 PASS DP=49;GPV=1;SPV=0.0065287;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:6,6:12,1 +chr3 173123601 . AT A 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2 +chr3 173195760 . C T 0 PASS DP=58;GPV=1;SPV=3.4859e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:8,6:10,9 +chr3 173390373 . A AAC 0 PASS DP=51;GPV=1;SPV=0.0024535;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:12,5:6,3 +chr3 173392472 . C CA 0 PASS DP=48;GPV=1;SPV=0.00083396;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:10,9:2,2 +chr3 174688478 . T C 0 PASS DP=55;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:1,2:0,1:1,1 +chr3 177078588 . C CA 0 PASS DP=41;GPV=1;SPV=0.030583;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:9,4:2,3 +chr3 181450618 . A T 0 PASS DP=68;GPV=1;SPV=0.00031835;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,7:13,3 +chr3 185548381 . G GA 0 PASS DP=35;GPV=1;SPV=0.008646;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,2:6,6 +chr3 188220216 . G A 0 PASS DP=61;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,3:8,6 +chr3 188625479 . C T 0 PASS DP=44;GPV=1;SPV=0.01057;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,3:8,3 +chr3 189523985 . G A 0 PASS DP=54;GPV=1;SPV=1.5161e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,4:4,8 +chr3 190379985 . C T 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,1:4,3 +chr3 190660288 . C A 0 PASS DP=49;GPV=1;SPV=0.0049228;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,3:7,5 +chr3 190825850 . T C 0 PASS DP=36;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,4:1,3:3,1 +chr3 190883811 . G GTTTTATTTTATTTTA 0 PASS DP=41;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,7:3,4:3,3 +chr3 192861597 . G A 0 PASS DP=66;GPV=1;SPV=0.010997;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,2:11,3 +chr3 194014156 . AC A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr3 195481361 . C T 0 PASS DP=101;GPV=1;SPV=0.026778;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:23,6:8,4 +chr3 195481549 . C A 0 PASS DP=180;GPV=1;SPV=0.048466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:35,6:39,4 +chr3 195484873 . T A 0 PASS DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:7,6:14,3 +chr3 195486323 . C T 0 PASS DP=101;GPV=1;SPV=0.018361;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:20,3:20,4 +chr3 195487825 . C A 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4 +chr3 195499116 . CTGTA C 0 PASS DP=152;GPV=1;SPV=0.045963;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:66,10:40,6:26,4 +chr3 195499282 . G A 0 PASS DP=149;GPV=1;SPV=0.03119;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:66,11:28,6:38,5 +chr3 195669138 . G A 0 PASS DP=84;GPV=1;SPV=0.048496;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:20,6:12,3 +chr3 195689548 . G T 0 PASS DP=132;GPV=1;SPV=0.03424;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:35,3:25,4 +chr3 196015564 . A T 0 PASS DP=68;GPV=1;SPV=7.1254e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:13,10:5,8 +chr3 197665144 . C T 0 PASS DP=169;GPV=1;SPV=0.0051126;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:55,14:39,4:16,10 +chr3 198013820 . C T 0 PASS DP=23;GPV=1;SPV=0.01373;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,1:3,4 +chr3 198103562 . G A 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr4 25558 . T C 0 PASS DP=108;GPV=1;SPV=0.0026406;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:5,1:36,6 +chr4 27296 . C A 0 PASS DP=287;GPV=1;SPV=0.021392;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:115,18:46,10:69,8 +chr4 28635 . G T 0 PASS DP=279;GPV=1;SPV=0.017318;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:115,27:68,17:47,10 +chr4 29099 . G C 0 PASS DP=333;GPV=1;SPV=0.02492;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:128,16:63,8:65,8 +chr4 39539 . G A 0 PASS DP=326;GPV=1;SPV=0.0050242;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:133,22:64,9:69,13 +chr4 40433 . T C 0 PASS DP=289;GPV=1;SPV=0.015862;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:120,20:47,10:73,10 +chr4 48672 . C T 0 PASS DP=284;GPV=1;SPV=0.042966;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:126,23:73,14:53,9 +chr4 1493999 . C A 0 PASS DP=74;GPV=1;SPV=0.051194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,2:17,2 +chr4 1767413 . G C 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr4 3973437 . G GGAGA 0 PASS DP=42;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:7,6:5,1 +chr4 5176438 . CT C 0 PASS DP=27;GPV=1;SPV=0.0016312;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:4,6:0,2 +chr4 6569717 . A G 0 PASS DP=23;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:4,2:0,0 +chr4 6977075 . C CCCT 0 PASS DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:3,4:2,5 +chr4 7165318 . C T 0 PASS DP=29;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,2:4,1:2,1 +chr4 7739206 . C A 0 PASS DP=63;GPV=1;SPV=0.004688;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,4:12,4 +chr4 7817635 . T TG 0 PASS DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:4,4:10,1 +chr4 9040909 . C T 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:10,6:1,1 +chr4 10136329 . G A 0 PASS DP=34;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,3:1,1:0,2 +chr4 11886330 . C CAT 0 PASS DP=55;GPV=1;SPV=0.0076913;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,5:13,2 +chr4 13007575 . T C 0 PASS DP=42;GPV=1;SPV=3.0378e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:6,7:1,6 +chr4 13515440 . A T 0 PASS DP=62;GPV=1;SPV=7.6487e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,17:9,12:6,5 +chr4 16910536 . TC T 0 PASS DP=25;GPV=1;SPV=0.18182;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:1,1:2,1 +chr4 17000537 . T TCC 0 PASS DP=35;GPV=1;SPV=0.040508;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:7,2:9,6 +chr4 18105962 . CT C 0 PASS DP=26;GPV=1;SPV=0.017534;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,9:1,7:1,2 +chr4 18358266 . C T 0 PASS DP=58;GPV=1;SPV=0.00056426;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,7:9,1 +chr4 19012460 . G A 0 PASS DP=53;GPV=1;SPV=0.0011064;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,6:4,1 +chr4 19135688 . A G 0 PASS DP=48;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,4:10,3:2,1 +chr4 19799201 . G T 0 PASS DP=55;GPV=1;SPV=2.0205e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:7,11:9,5 +chr4 20261340 . G C 0 PASS DP=56;GPV=1;SPV=5.4482e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:11,6:5,6 +chr4 20303009 . G A 0 PASS DP=48;GPV=1;SPV=0.012328;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,5:5,2:7,3 +chr4 20362937 . T A 0 PASS DP=58;GPV=1;SPV=0.00025782;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:4,3:9,4 +chr4 20803470 . CAAAAAAAAAAAAAAAAAAA C 0 PASS DP=18;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chr4 20837623 . G GAT 0 PASS DP=41;GPV=1;SPV=0.0052884;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,5:5,4 +chr4 21200339 . CAT C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr4 21200348 . ATGTGTG A 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr4 21519732 . A G 0 PASS DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr4 22777492 . T C 0 PASS DP=45;GPV=1;SPV=0.042724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:4,2:7,4 +chr4 24159206 . C CTT 0 PASS DP=20;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr4 24229843 . C CA 0 PASS DP=44;GPV=1;SPV=0.012445;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,10:11,6:1,4 +chr4 24387764 . GAGAGAA G 0 PASS DP=31;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,3:3,1 +chr4 24430255 . C CT 0 PASS DP=22;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr4 27702962 . C T 0 PASS DP=44;GPV=1;SPV=0.0001763;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:4,4:8,7 +chr4 27832897 . G GTA 0 PASS DP=20;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr4 28368863 . C CT 0 PASS DP=40;GPV=1;SPV=0.0010998;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,12:6,9:2,3 +chr4 28599638 . AT A 0 PASS DP=24;GPV=1;SPV=0.10577;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,4:3,1 +chr4 28780849 . G GA 0 PASS DP=41;GPV=1;SPV=0.038274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2 +chr4 29036293 . T TAGAGAGAG 0 PASS DP=34;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,5:7,3:2,2 +chr4 30251742 . G GT 0 PASS DP=40;GPV=1;SPV=0.042595;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,2:6,2 +chr4 31794502 . T G 0 PASS DP=60;GPV=1;SPV=0.021615;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,3:14,4 +chr4 31949442 . T TCTGTGAATGCCCAAGTC 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,4:7,7 +chr4 31998540 . C T 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:9,2:13,2 +chr4 32328479 . A G 0 PASS DP=70;GPV=1;SPV=4.9527e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,23:5,14:12,9 +chr4 32415428 . AGTTAGCT A 0 PASS DP=38;GPV=1;SPV=0.0029033;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:3,7:7,3 +chr4 32419738 . T A 0 PASS DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:11,6:12,7 +chr4 33608707 . C G 0 PASS DP=56;GPV=1;SPV=1.8161e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:9,8:3,2 +chr4 34188552 . C T 0 PASS DP=59;GPV=1;SPV=0.00048983;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,4:9,8 +chr4 36555442 . C CTT 0 PASS DP=28;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,5:2,1 +chr4 38135874 . G A 0 PASS DP=52;GPV=1;SPV=0.04966;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,2:13,4 +chr4 40216136 . A AT 0 PASS DP=47;GPV=1;SPV=0.0020738;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:10,8:3,2 +chr4 40642727 . T G 0 PASS DP=37;GPV=1;SPV=0.16484;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:2,1:2,1 +chr4 41460395 . C T 0 PASS DP=36;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:7,1:5,8 +chr4 41515324 . T G 0 PASS DP=73;GPV=1;SPV=0.0035372;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,3:8,2 +chr4 42257822 . GTATT G 0 PASS DP=47;GPV=1;SPV=0.0054438;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,8:5,2:6,6 +chr4 42936026 . T C 0 PASS DP=34;GPV=1;SPV=0.0011989;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:2,4:5,12 +chr4 43101703 . ATGTGTGTGTGTG A 0 PASS DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:1,2:0,0 +chr4 43271980 . AAGATAGAT A 0 PASS DP=50;GPV=1;SPV=0.02677;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,6:6,2 +chr4 44045765 . G GA 0 PASS DP=38;GPV=1;SPV=0.0034446;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,4:6,2 +chr4 44989685 . G T 0 PASS DP=51;GPV=1;SPV=0.00042977;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,1:7,8 +chr4 45692158 . TAA T 0 PASS DP=21;GPV=1;SPV=0.022977;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,8:0,4:1,4 +chr4 45740364 . T C 0 PASS DP=50;GPV=1;SPV=0.00020684;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,3:9,8 +chr4 46152997 . T TCAAGGTTACACAGGTACTAAATGGCAAAGC 0 PASS DP=35;GPV=1;SPV=0.0074932;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,3:3,4 +chr4 47195444 . ATGATAGATAGAT A 0 PASS DP=42;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:8,2:2,3 +chr4 49034001 . G A 0 PASS DP=66;GPV=1;SPV=7.3475e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:12,9:12,7 +chr4 49155725 . GATTCTGTTCCATTCCATTCCATTCCATTCC G 0 PASS DP=50;GPV=1;SPV=0.042001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:7,2:6,4 +chr4 49158126 . A G 0 PASS DP=261;GPV=1;SPV=0.00047133;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:105,14:40,10:65,4 +chr4 49159598 . A T 0 PASS DP=149;GPV=1;SPV=0.023819;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:65,19:31,12:34,7 +chr4 49188826 . G A 0 PASS DP=96;GPV=1;SPV=0.029893;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,9:19,2:21,7 +chr4 49195988 . C T 0 PASS DP=233;GPV=1;SPV=0.0187;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:76,13:37,9:39,4 +chr4 49209561 . CTTCT C 0 PASS DP=426;GPV=1;SPV=0.028794;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:177,24:128,19:49,5 +chr4 49235636 . T C 0 PASS DP=164;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:71,15:33,9:38,6 +chr4 49268131 . C T 0 PASS DP=250;GPV=1;SPV=0.014656;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:56,9:44,9 +chr4 49292167 . T TGGG 0 PASS DP=133;GPV=1;SPV=0.045585;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:34,2:18,8 +chr4 49298009 . A G 0 PASS DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,1:14,7 +chr4 49504533 . G A 0 PASS DP=123;GPV=1;SPV=0.032041;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:19,6:26,4 +chr4 49521658 . G A 0 PASS DP=149;GPV=1;SPV=0.029111;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:59,11:35,9:24,2 +chr4 49538737 . C T 0 PASS DP=163;GPV=1;SPV=0.027785;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:72,11:39,4:33,7 +chr4 49539297 . G A 0 PASS DP=212;GPV=1;SPV=0.030851;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:91,17:60,11:31,6 +chr4 49546529 . C G 0 PASS DP=388;GPV=1;SPV=0.043726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:174,27:61,11:113,16 +chr4 49580423 . C G 0 PASS DP=466;GPV=1;SPV=0.036691;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:193,24:83,11:110,13 +chr4 49623761 . G C 0 PASS DP=90;GPV=1;SPV=0.017246;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:23,3:18,3 +chr4 49893743 . C G 0 PASS DP=85;GPV=1;SPV=0.040622;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:6,1:29,3 +chr4 50431596 . G A 0 PASS DP=18;GPV=1;SPV=0.022876;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr4 50600013 . C T 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr4 50644126 . A G 0 PASS DP=35;GPV=1;SPV=0.30924;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:19,3:2,0 +chr4 51059315 . G C 0 PASS DP=43;GPV=1;SPV=0.013215;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,8:8,1 +chr4 51574080 . G T 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr4 51895201 . TA T 0 PASS DP=55;GPV=1;SPV=0.0010272;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,3:11,7 +chr4 55629615 . CAAAA C 0 PASS DP=33;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:2,4:4,1 +chr4 56545718 . C CAA 0 PASS DP=31;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:4,3:3,1 +chr4 56548991 . C CTT 0 PASS DP=31;GPV=1;SPV=0.030289;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,2:3,3 +chr4 57021485 . C CT 0 PASS DP=19;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,4:2,4:0,0 +chr4 58752969 . ATT A 0 PASS DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:9,3:7,3 +chr4 59130721 . T TA 0 PASS DP=48;GPV=1;SPV=0.0014606;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,14:5,8:7,6 +chr4 60066131 . CT C 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr4 60220865 . G GTGTATATATA 0 PASS DP=43;GPV=1;SPV=0.021263;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr4 60696202 . C A 0 PASS DP=68;GPV=1;SPV=0.0020609;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:17,8:13,3 +chr4 61893112 . T C 0 PASS DP=40;GPV=1;SPV=0.018803;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:1,1:6,3 +chr4 62980752 . C T 0 PASS DP=79;GPV=1;SPV=3.3946e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:6,8:9,4 +chr4 63086068 . A G 0 PASS DP=54;GPV=1;SPV=0.0064344;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:4,2:12,3 +chr4 63351189 . T G 0 PASS DP=63;GPV=1;SPV=2.6179e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,17:5,6:9,11 +chr4 63535392 . C G 0 PASS DP=35;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr4 63536748 . GACAA G 0 PASS DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:5,2:9,2 +chr4 64155422 . G A 0 PASS DP=17;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,3:0,1:0,2 +chr4 64351087 . T A 0 PASS DP=24;GPV=1;SPV=0.011858;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1 +chr4 64610087 . G T 0 PASS DP=75;GPV=1;SPV=0.00042022;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:15,6:12,4 +chr4 64880892 . A T 0 PASS DP=32;GPV=1;SPV=0.0012514;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,2:4,3 +chr4 65045263 . T TAAGAAGAAGAAGAAG 0 PASS DP=46;GPV=1;SPV=0.094902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,5:14,3:8,2 +chr4 65317488 . A AT 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2 +chr4 65681947 . T G 0 PASS DP=63;GPV=1;SPV=5.5244e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,6:7,3 +chr4 66516477 . G GTA 0 PASS DP=34;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,5:3,4 +chr4 67371441 . G GTGTGTT 0 PASS DP=43;GPV=1;SPV=0.065489;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,1:7,3 +chr4 67604809 . T C 0 PASS DP=64;GPV=1;SPV=4.5525e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:6,9:16,7 +chr4 68041060 . C T 0 PASS DP=39;GPV=1;SPV=0.0025253;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,2:4,8 +chr4 69526108 . CAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=24;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:4,4:3,1 +chr4 70837563 . C CA 0 PASS DP=24;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,4:0,2:4,2 +chr4 72007650 . A G 0 PASS DP=62;GPV=1;SPV=1.5329e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:6,10:5,4 +chr4 73644879 . GGT G 0 PASS DP=36;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,4:2,1 +chr4 74917072 . C CTTTTTTTT 0 PASS DP=18;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:0,4:2,1 +chr4 75187112 . T C 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:2,1:8,3 +chr4 76091679 . C CT 0 PASS DP=24;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,6:2,5:1,1 +chr4 76336181 . CAAA C 0 PASS DP=34;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:7,9:3,2 +chr4 76646225 . A AATAAATATAT 0 PASS DP=44;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:9,7:5,1 +chr4 76918351 . G A 0 PASS DP=100;GPV=1;SPV=0.011197;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:17,4:23,4 +chr4 78872303 . C CT 0 PASS DP=28;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chr4 79303076 . TTATATATATATATA T 0 PASS DP=19;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:4,3:0,1 +chr4 80060190 . T C 0 PASS DP=45;GPV=1;SPV=0.00018954;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,7:6,2 +chr4 80868907 . G C 0 PASS DP=58;GPV=1;SPV=0.031591;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,4:10,1 +chr4 81366582 . A AAAACCGACC 0 PASS DP=54;GPV=1;SPV=0.053727;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,2:15,3 +chr4 83521118 . C T 0 PASS DP=32;GPV=1;SPV=0.021691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:1,1:10,4 +chr4 85875093 . A G 0 PASS DP=19;GPV=1;SPV=0.03989;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,4:2,2 +chr4 87022662 . G A 0 PASS DP=39;GPV=1;SPV=0.33319;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,2:14,2 +chr4 87197952 . G GTAAA 0 PASS DP=45;GPV=1;SPV=0.013933;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,8:7,1 +chr4 90007095 . CT C 0 PASS DP=45;GPV=1;SPV=0.0080725;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:13,7:6,3 +chr4 90796417 . TTA T 0 PASS DP=44;GPV=1;SPV=0.020897;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,10:8,7:8,3 +chr4 91766222 . C CTA 0 PASS DP=36;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,7:3,5:6,2 +chr4 91782584 . A G 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr4 92073528 . C T 0 PASS DP=56;GPV=1;SPV=1.8161e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:2,5:10,5 +chr4 92708101 . G T 0 PASS DP=57;GPV=1;SPV=0.0044785;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,4:11,3 +chr4 92958866 . G T 0 PASS DP=57;GPV=1;SPV=1.3655e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,4:5,8 +chr4 93371741 . C CT 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,4:0,0 +chr4 94418545 . C A 0 PASS DP=49;GPV=1;SPV=0.00015299;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,5:5,6 +chr4 94524368 . CAAAA C 0 PASS DP=23;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:2,4:0,1 +chr4 95087259 . CATAT C 0 PASS DP=60;GPV=1;SPV=0.015001;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr4 95087265 . CTTCTAATCAATT C 0 PASS DP=57;GPV=1;SPV=0.018519;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,1:11,3 +chr4 95890247 . TTA T 0 PASS DP=24;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3 +chr4 96292651 . G C 0 PASS DP=59;GPV=1;SPV=0.1124;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:12,1:14,2 +chr4 98754508 . C T 0 PASS DP=71;GPV=1;SPV=0.0072285;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:21,6:11,2 +chr4 100568361 . C CAAAAAAAAAAAAAAAAAA 0 PASS DP=17;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,4:2,4:0,0 +chr4 100836100 . G C 0 PASS DP=43;GPV=1;SPV=1.4836e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:5,2:2,12 +chr4 102908195 . CTT C 0 PASS DP=149;GPV=1;SPV=0.033882;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:56,13:32,5:24,8 +chr4 104464362 . C CA 0 PASS DP=29;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,5:2,1 +chr4 105099523 . G GAA 0 PASS DP=43;GPV=1;SPV=0.0010365;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:6,3:3,6 +chr4 107234720 . C CAA 0 PASS DP=29;GPV=1;SPV=0.0073297;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,5:3,2 +chr4 108230622 . T G 0 PASS DP=73;GPV=1;SPV=0.02902;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,3:14,2 +chr4 109430064 . A C 0 PASS DP=46;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:1,4:0,1:1,3 +chr4 111078136 . C T 0 PASS DP=52;GPV=1;SPV=2.2678e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:5,5:9,9 +chr4 112224517 . T C 0 PASS DP=18;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,2:1,1:3,1 +chr4 113205235 . C CAAA 0 PASS DP=24;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:2,5:3,1 +chr4 113856891 . A T 0 PASS DP=51;GPV=1;SPV=0.010227;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,4:9,3 +chr4 117227836 . C G 0 PASS DP=54;GPV=1;SPV=0.0012555;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:8,4:12,6 +chr4 117610365 . C A 0 PASS DP=40;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,4:2,2:2,2 +chr4 118451984 . T A 0 PASS DP=32;GPV=1;SPV=0.0063218;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,6:4,3:4,3 +chr4 119835931 . C T 0 PASS DP=29;GPV=1;SPV=0.01246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,5:6,2 +chr4 120099655 . C T 0 PASS DP=51;GPV=1;SPV=0.0001095;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,6:6,6 +chr4 120560931 . C T 0 PASS DP=32;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,2:4,1:2,1 +chr4 121124888 . AGG A 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,3:5,1 +chr4 121145979 . T TA 0 PASS DP=53;GPV=1;SPV=0.0012203;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:12,3:5,5 +chr4 121162601 . G T 0 PASS DP=61;GPV=1;SPV=1.7819e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:8,3:6,11 +chr4 121427233 . C CT 0 PASS DP=51;GPV=1;SPV=0.014324;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,2:9,3 +chr4 125180690 . AAG A 0 PASS DP=25;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:7,3:1,1 +chr4 130548221 . G GA 0 PASS DP=43;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,2:2,2 +chr4 131741404 . A G 0 PASS DP=188;GPV=1;SPV=0.015965;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:74,10:42,3:32,7 +chr4 132151879 . AT A 0 PASS DP=51;GPV=1;SPV=0.0024544;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,2:9,5 +chr4 132956792 . CA C 0 PASS DP=43;GPV=1;SPV=0.01208;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr4 133766670 . G GA 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:21,3:6,1 +chr4 134154324 . C T 0 PASS DP=60;GPV=1;SPV=5.0667e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,18:6,9:3,9 +chr4 134230518 . G A 0 PASS DP=65;GPV=1;SPV=0.0018725;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,5:15,6 +chr4 134599757 . G T 0 PASS DP=62;GPV=1;SPV=1.1146e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:10,5:8,10 +chr4 134628423 . G A 0 PASS DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:9,2:12,3 +chr4 135232343 . A T 0 PASS DP=63;GPV=1;SPV=2.1173e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,5:7,6 +chr4 135424024 . A ATTT 0 PASS DP=22;GPV=1;SPV=0.0003147;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,10:0,6:1,4 +chr4 136353407 . C CA 0 PASS DP=34;GPV=1;SPV=0.0023953;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:9,6:1,3 +chr4 137294181 . A T 0 PASS DP=60;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:3,3:2,1:1,2 +chr4 137486932 . C T 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,3:11,1 +chr4 137728455 . AT A 0 PASS DP=62;GPV=1;SPV=2.1199e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:8,17:6,13:2,4 +chr4 140764434 . GAAA G 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,2:9,2 +chr4 141070820 . G C 0 PASS DP=55;GPV=1;SPV=0.0044568;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,3:11,2 +chr4 141070845 . C A 0 PASS DP=49;GPV=1;SPV=0.0032451;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,3:9,2 +chr4 142571089 . C CA 0 PASS DP=33;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,7:2,3 +chr4 143147103 . C A 0 PASS DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:9,6:9,1 +chr4 145488476 . TTG T 0 PASS DP=53;GPV=1;SPV=0.0023616;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:7,10:9,5 +chr4 145740240 . CAAAAAAAAAA C 0 PASS DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr4 147060358 . C T 0 PASS DP=47;GPV=1;SPV=0.004949;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,8:6,3 +chr4 148104340 . T TGTTTTGGTTTG 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,2:8,2 +chr4 148589700 . G T 0 PASS DP=71;GPV=1;SPV=2.7714e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:15,6:6,6 +chr4 148749498 . GA G 0 PASS DP=37;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,6:6,5:2,1 +chr4 149703913 . C A 0 PASS DP=57;GPV=1;SPV=0.00076774;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,4:8,5 +chr4 149861290 . G T 0 PASS DP=59;GPV=1;SPV=0.00010405;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,3:5,6 +chr4 149995142 . A AAG 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:5,1:9,3 +chr4 150108246 . C T 0 PASS DP=61;GPV=1;SPV=3.6371e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,7:11,7 +chr4 150733578 . A T 0 PASS DP=46;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,5:8,3:2,2 +chr4 155825297 . T TAC 0 PASS DP=46;GPV=1;SPV=3.507e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,12:2,9:2,3 +chr4 157525468 . C A 0 PASS DP=59;GPV=1;SPV=0.0010012;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:14,4:5,4 +chr4 158429863 . C CA 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2 +chr4 159198271 . CTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT C 0 PASS DP=31;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:0,1:7,4 +chr4 159340667 . CCA C 0 PASS DP=31;GPV=1;SPV=0.016809;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,2:4,4 +chr4 162333631 . A G 0 PASS DP=58;GPV=1;SPV=0.0012565;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:14,5:9,6 +chr4 162717143 . T G 0 PASS DP=43;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:4,2:6,2 +chr4 163590057 . G GGTGTGTGTGTGTGTGT 0 PASS DP=42;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:5,5:5,1 +chr4 163812152 . G A 0 PASS DP=52;GPV=1;SPV=0.002657;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,6:12,6 +chr4 164354726 . C T 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr4 164541450 . C T 0 PASS DP=57;GPV=1;SPV=2.4158e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,6:6,5 +chr4 164939267 . CAAA C 0 PASS DP=46;GPV=1;SPV=0.0092274;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:11,26:5,17:6,9 +chr4 165690124 . C CTT 0 PASS DP=23;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,2:1,2 +chr4 166578529 . TA T 0 PASS DP=51;GPV=1;SPV=0.05848;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:3,2:0,0 +chr4 168959565 . T C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,2:3,2 +chr4 169892545 . C CT 0 PASS DP=37;GPV=1;SPV=0.0027776;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,4:2,5 +chr4 170222811 . G GGTGT 0 PASS DP=43;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:6,8:1,2 +chr4 170486385 . A ATG 0 PASS DP=22;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,2:2,2 +chr4 172069553 . A ATG 0 PASS DP=34;GPV=1;SPV=0.0046252;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,2:3,3 +chr4 173497650 . C CA 0 PASS DP=35;GPV=1;SPV=0.0034325;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,5:2,1 +chr4 173868968 . G A 0 PASS DP=70;GPV=1;SPV=5.9337e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:12,9:11,11 +chr4 174110292 . T C 0 PASS DP=53;GPV=1;SPV=3.79e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,7:6,2 +chr4 174609558 . C CTTT 0 PASS DP=23;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:6,3:3,1 +chr4 175490507 . CA C 0 PASS DP=43;GPV=1;SPV=0.0022052;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:10,5:4,3 +chr4 175953008 . C T 0 PASS DP=49;GPV=1;SPV=1.298e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,17:4,10:6,7 +chr4 177184945 . G A 0 PASS DP=35;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,5:4,4:1,1 +chr4 177184947 . A G 0 PASS DP=39;GPV=1;SPV=0.10784;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,4:5,3:2,1 +chr4 178472657 . T TAAA 0 PASS DP=34;GPV=1;SPV=0.019346;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:7,5:6,3 +chr4 178673782 . A ATGTG 0 PASS DP=31;GPV=1;SPV=0.14404;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr4 178822382 . GA G 0 PASS DP=47;GPV=1;SPV=0.0031364;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,3:9,8 +chr4 178822384 . A G 0 PASS DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:9,3:12,3 +chr4 179450058 . C CTT 0 PASS DP=31;GPV=1;SPV=0.033794;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,3:5,2 +chr4 179538614 . T A 0 PASS DP=60;GPV=1;SPV=0.021744;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,1:13,4 +chr4 181791460 . T A 0 PASS DP=68;GPV=1;SPV=4.0902e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:10,9:6,7 +chr4 181803954 . G A 0 PASS DP=27;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:2,1:3,1 +chr4 185076265 . TA T 0 PASS DP=24;GPV=1;SPV=0.18182;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:0,1:3,1 +chr4 185093140 . CTTT C 0 PASS DP=17;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chr4 185239771 . TTTC T 0 PASS DP=64;GPV=1;SPV=0.004102;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,3:12,5 +chr4 185239776 . T C 0 PASS DP=49;GPV=1;SPV=0.034496;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3 +chr4 186929943 . C CAAAAA 0 PASS DP=53;GPV=1;SPV=0.029503;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:12,5:3,2 +chr4 187027218 . A ATGTGTGTG 0 PASS DP=39;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,6:9,5:9,1 +chr4 188130754 . T C 0 PASS DP=56;GPV=1;SPV=0.0040588;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:7,3:8,2 +chr4 189197004 . T G 0 PASS DP=55;GPV=1;SPV=0.0060655;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,3:14,6 +chr4 189693572 . C CA 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,3:2,2 +chr4 190097105 . C T 0 PASS DP=218;GPV=1;SPV=0.016545;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:82,15:30,8:52,7 +chr4 190108463 . C A 0 PASS DP=300;GPV=1;SPV=0.017876;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:121,17:65,7:56,10 +chr4 190117450 . G GT 0 PASS DP=44;GPV=1;SPV=0.05337;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:10,2:12,4 +chr4 190203701 . C T 0 PASS DP=153;GPV=1;SPV=0.044094;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:57,12:21,4:36,8 +chr5 786736 . A G 0 PASS DP=40;GPV=1;SPV=0.025784;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,5:5,2 +chr5 787732 . G A 0 PASS DP=112;GPV=1;SPV=0.042625;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:27,4:20,6 +chr5 801057 . C T 0 PASS DP=68;GPV=1;SPV=0.017545;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:16,5:6,5 +chr5 834381 . C T 0 PASS DP=133;GPV=1;SPV=0.031495;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:32,5:26,6 +chr5 1291685 . G A 0 PASS DP=23;GPV=1;SPV=0.04958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,4:1,2 +chr5 2925045 . G A 0 PASS DP=67;GPV=1;SPV=4.4743e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:14,7:9,8 +chr5 3067337 . TTTTC T 0 PASS DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5 +chr5 3281558 . G A 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3 +chr5 3660148 . G A 0 PASS DP=31;GPV=1;SPV=0.057842;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr5 4075662 . T C 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,3:6,8 +chr5 4111044 . A T 0 PASS DP=65;GPV=1;SPV=7.9674e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:12,20:6,11:6,9 +chr5 4295528 . AC A 0 PASS DP=46;GPV=1;SPV=0.0002482;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:9,4:5,8 +chr5 4435548 . T C 0 PASS DP=47;GPV=1;SPV=8.1326e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:3,5:7,8 +chr5 7995134 . A T 0 PASS DP=51;GPV=1;SPV=9.3592e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,6:5,5 +chr5 8994427 . A G 0 PASS DP=55;GPV=1;SPV=6.9341e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:5,7:11,5 +chr5 9035959 . C CA 0 PASS DP=24;GPV=1;SPV=0.020979;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,7:1,6:1,1 +chr5 9724344 . CTT C 0 PASS DP=36;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,11:5,7:4,4 +chr5 11736626 . A T 0 PASS DP=53;GPV=1;SPV=0.021989;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:10,6:18,5 +chr5 13300269 . C T 0 PASS DP=58;GPV=1;SPV=0.0067708;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:7,4:16,3 +chr5 13421330 . G C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 13554519 . CTCCTTCCTTCCTTCCTTCCT C 0 PASS DP=27;GPV=1;SPV=0.0018511;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,7:0,1:1,6 +chr5 15904349 . G T 0 PASS DP=54;GPV=1;SPV=1.4125e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:6,5:6,6 +chr5 17065219 . C A 0 PASS DP=54;GPV=1;SPV=4.7807e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:7,5:6,5 +chr5 17067679 . T A 0 PASS DP=32;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,5:0,2:0,3 +chr5 18035622 . A C 0 PASS DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,1:19,3 +chr5 18311530 . G T 0 PASS DP=62;GPV=1;SPV=0.00010063;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:9,7:13,8 +chr5 19382649 . G A 0 PASS DP=34;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:1,1:2,4 +chr5 20463302 . GA G 0 PASS DP=38;GPV=1;SPV=0.00058624;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,4:5,7 +chr5 20646319 . A G 0 PASS DP=37;GPV=1;SPV=0.0127;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:5,1:10,7 +chr5 21488938 . T A 0 PASS DP=59;GPV=1;SPV=0.015769;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:16,4:11,3 +chr5 21875683 . C A 0 PASS DP=27;GPV=1;SPV=0.040741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:2,3:7,1 +chr5 22523981 . AT A 0 PASS DP=31;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1 +chr5 24198074 . A G 0 PASS DP=33;GPV=1;SPV=0.046816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,4:6,4 +chr5 24913764 . G C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,3:13,1 +chr5 25117122 . A C 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr5 25848929 . T C 0 PASS DP=50;GPV=1;SPV=0.00081542;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,5:8,4 +chr5 29310817 . C CA 0 PASS DP=43;GPV=1;SPV=0.00029784;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,7:6,2 +chr5 30426114 . G T 0 PASS DP=64;GPV=1;SPV=0.032225;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,3:8,1 +chr5 30426139 . AG A 0 PASS DP=62;GPV=1;SPV=0.018352;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,4:11,1 +chr5 30474110 . C CA 0 PASS DP=38;GPV=1;SPV=0.02066;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,4:2,1 +chr5 30756258 . A T 0 PASS DP=55;GPV=1;SPV=0.0004914;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:7,2:10,7 +chr5 30978445 . G GTGTGTATATATATATA 0 PASS DP=28;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:2,1:10,4 +chr5 31577922 . A AT 0 PASS DP=51;GPV=1;SPV=0.0074736;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:7,1:11,5 +chr5 31684563 . GT G 0 PASS DP=35;GPV=1;SPV=0.00084538;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,6:5,5 +chr5 31794393 . CTT C 0 PASS DP=24;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:1,5:4,1 +chr5 32330471 . C CGTGTGCATGTGTGCACAT 0 PASS DP=62;GPV=1;SPV=0.0036088;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,2:12,9 +chr5 32994567 . T C 0 PASS DP=34;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:9,4:1,1 +chr5 34188039 . C T 0 PASS DP=449;GPV=1;SPV=0.0034144;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:237:197,40:101,16:96,24 +chr5 35337023 . T G 0 PASS DP=58;GPV=1;SPV=0.011736;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:10,4:13,2 +chr5 35714680 . T TTTTA 0 PASS DP=52;GPV=1;SPV=0.00062385;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:7,10:6,4 +chr5 36663380 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,2:6,2 +chr5 37392177 . G GT 0 PASS DP=41;GPV=1;SPV=1.3766e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,11:3,8:4,3 +chr5 39971756 . A T 0 PASS DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,4:8,3 +chr5 40790526 . T TC 0 PASS DP=42;GPV=1;SPV=0.062457;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:7,3:13,2 +chr5 41496627 . C CA 0 PASS DP=43;GPV=1;SPV=0.02002;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:10,8:2,1 +chr5 42735836 . G C 0 PASS DP=50;GPV=1;SPV=0.036877;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:6,1:11,7 +chr5 42925502 . C T 0 PASS DP=37;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,3:2,1:1,2 +chr5 43731181 . C CTCT 0 PASS DP=33;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,2:3,3 +chr5 43938390 . C T 0 PASS DP=45;GPV=1;SPV=3.26e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:4,13:2,8:2,5 +chr5 46173991 . G T 0 PASS DP=52;GPV=1;SPV=4.1324e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:3,6:10,5 +chr5 46384061 . G A 0 PASS DP=55;GPV=1;SPV=2.5801e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,11:7,2 +chr5 46625466 . T A 0 PASS DP=426;GPV=1;SPV=0.031626;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:204:175,29:80,13:95,16 +chr5 47119184 . A G 0 PASS DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:11,3:21,2 +chr5 47119442 . A T 0 PASS DP=38;GPV=1;SPV=0.011316;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,4:4,5 +chr5 47141678 . A G 0 PASS DP=32;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr5 50132477 . A G 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr5 50141734 . T G 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:15,3:1,3 +chr5 50142658 . C G 0 PASS DP=266;GPV=1;SPV=0.0086507;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:102,18:63,13:39,5 +chr5 50143548 . A T 0 PASS DP=435;GPV=1;SPV=0.038728;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:170,31:72,18:98,13 +chr5 51103574 . A T 0 PASS DP=58;GPV=1;SPV=6.5361e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:13,9:5,4 +chr5 52439551 . G A 0 PASS DP=64;GPV=1;SPV=0.037381;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,2:14,2 +chr5 53598043 . C T 0 PASS DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,3:10,1 +chr5 53601186 . G C 0 PASS DP=48;GPV=1;SPV=0.0027946;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5 +chr5 53658784 . C CA 0 PASS DP=32;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,4:3,1 +chr5 56135351 . CTTTCT C 0 PASS DP=25;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,1:4,5 +chr5 56341091 . G GT 0 PASS DP=16;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:3,2:1,2 +chr5 57138557 . T C 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,1:0,3 +chr5 57458000 . A G 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:1,3:9,6 +chr5 57719698 . C G 0 PASS DP=39;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,2:5,3 +chr5 58088476 . AAT A 0 PASS DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,3:5,2 +chr5 58625856 . C CA 0 PASS DP=37;GPV=1;SPV=0.036129;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,5:6,4 +chr5 62636219 . GT G 0 PASS DP=27;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:4,4:0,2 +chr5 63267550 . C G 0 PASS DP=55;GPV=1;SPV=0.035568;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,5:8,3:7,2 +chr5 65223801 . A ATT 0 PASS DP=45;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:15,3:2,1 +chr5 65321738 . C T 0 PASS DP=28;GPV=1;SPV=0.0070913;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:3,4:3,6 +chr5 66259639 . A G 0 PASS DP=42;GPV=1;SPV=0.046752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,4:7,3 +chr5 66648034 . ATGTGTGTGTGTGTGTG A 0 PASS DP=29;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:8,3:3,1 +chr5 68527167 . AT A 0 PASS DP=56;GPV=1;SPV=0.025729;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,3:12,2 +chr5 69151114 . T TAA 0 PASS DP=40;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,6:6,5:6,1 +chr5 69673590 . A C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr5 70081412 . G A 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr5 72704906 . C CT 0 PASS DP=38;GPV=1;SPV=0.00026317;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:4,2:4,6 +chr5 73938160 . C CCACACACACA 0 PASS DP=36;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,10:6,6:1,4 +chr5 74503607 . A T 0 PASS DP=49;GPV=1;SPV=0.035604;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,6:10,2:5,4 +chr5 74748880 . TA T 0 PASS DP=41;GPV=1;SPV=0.020407;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:2,3:10,3 +chr5 74914922 . TGTG T 0 PASS DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:9,5:3,3 +chr5 75750741 . C CATTCATCTATCTATCT 0 PASS DP=63;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6 +chr5 76778462 . T A 0 PASS DP=34;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,3:1,2:1,1 +chr5 77225848 . G GCA 0 PASS DP=46;GPV=1;SPV=0.0054795;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,5:5,5 +chr5 77794886 . GC G 0 PASS DP=35;GPV=1;SPV=0.0014231;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,3:1,2 +chr5 78768352 . C CTTTTTTTTTTTCT 0 PASS DP=34;GPV=1;SPV=0.024462;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:4,2:6,2 +chr5 80178537 . A ATT 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:1,3:2,1 +chr5 80182555 . CT C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr5 80738651 . T C 0 PASS DP=53;GPV=1;SPV=0.0015905;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,4:6,3 +chr5 81618308 . T C 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,1:4,4 +chr5 81798603 . G GCA 0 PASS DP=34;GPV=1;SPV=0.043382;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:7,3:4,1 +chr5 82186593 . T A 0 PASS DP=45;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:0,0:1,2 +chr5 82473017 . TATATATTATC T 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2 +chr5 82473099 . TTATAA T 0 PASS DP=44;GPV=1;SPV=0.0078894;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:4,2:9,3 +chr5 82979395 . G A 0 PASS DP=23;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,2:7,2:0,0 +chr5 85103160 . G C 0 PASS DP=46;GPV=1;SPV=0.014907;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,5:3,4:4,1 +chr5 85555745 . C CTATATATATA 0 PASS DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:2,3:2,1 +chr5 85980904 . C CAAA 0 PASS DP=29;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,4:3,1 +chr5 86041764 . CTT C 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr5 94847684 . A G 0 PASS DP=37;GPV=1;SPV=0.11053;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:1,1:4,1 +chr5 96954713 . C T 0 PASS DP=30;GPV=1;SPV=0.049808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,1:6,3 +chr5 98280732 . G GGATAGATAGATA 0 PASS DP=45;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:6,3:3,3 +chr5 98911146 . A AATATATAT 0 PASS DP=27;GPV=1;SPV=0.047431;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:3,2:2,2 +chr5 98996250 . C T 0 PASS DP=60;GPV=1;SPV=4.4713e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:6,6:9,8 +chr5 102138395 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.04308;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,3:4,2 +chr5 103865661 . G GGTGTGT 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2 +chr5 107659496 . CT C 0 PASS DP=32;GPV=1;SPV=0.0012716;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:2,6:4,5 +chr5 109202422 . ATG A 0 PASS DP=44;GPV=1;SPV=0.042283;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:7,1:6,2 +chr5 109342265 . C T 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,3:4,1 +chr5 110524408 . AAAG A 0 PASS DP=51;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,5:9,2:4,3 +chr5 112889829 . A ATT 0 PASS DP=43;GPV=1;SPV=0.015905;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,8:1,4:3,4 +chr5 114236398 . T TAATTCAATTAC 0 PASS DP=43;GPV=1;SPV=0.018956;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr5 114891042 . G A 0 PASS DP=63;GPV=1;SPV=1.7528e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:9,12:8,6 +chr5 116688375 . G GTATC 0 PASS DP=26;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:0,0:4,2 +chr5 117585075 . C CA 0 PASS DP=29;GPV=1;SPV=0.004119;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:4,7:3,1 +chr5 117638790 . A G 0 PASS DP=52;GPV=1;SPV=0.098039;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,2:2,1:2,1 +chr5 118850309 . CA C 0 PASS DP=36;GPV=1;SPV=2.8354e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:2,8:3,1 +chr5 119894971 . G GGTGT 0 PASS DP=41;GPV=1;SPV=0.0079383;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,8:6,4:3,4 +chr5 120518564 . CT C 0 PASS DP=34;GPV=1;SPV=0.016617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,5:5,6 +chr5 121493096 . A T 0 PASS DP=58;GPV=1;SPV=0.020557;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,6:5,4:5,2 +chr5 122461669 . GT G 0 PASS DP=36;GPV=1;SPV=0.00027871;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,7:2,4:2,3 +chr5 125196155 . C G 0 PASS DP=44;GPV=1;SPV=0.024679;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,3:5,3 +chr5 125276936 . G A 0 PASS DP=49;GPV=1;SPV=0.0013275;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:7,4:5,2 +chr5 126517357 . A ATT 0 PASS DP=29;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,10:3,8:1,2 +chr5 126954199 . A AT 0 PASS DP=43;GPV=1;SPV=0.0091635;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:11,6:6,2 +chr5 127921100 . A AAGGAAAGGAGAAAGGAG 0 PASS DP=33;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,3:9,1 +chr5 129498798 . AT A 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr5 129816647 . A ACG 0 PASS DP=49;GPV=1;SPV=0.019748;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:6,8:11,3 +chr5 130083941 . T G 0 PASS DP=55;GPV=1;SPV=0.02651;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,2:12,5 +chr5 132123273 . C CA 0 PASS DP=36;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1 +chr5 134544329 . T C 0 PASS DP=76;GPV=1;SPV=5.2583e-10;SS=2;SSC=92;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,20:3,9:10,11 +chr5 134594308 . T C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,2:7,5 +chr5 135093687 . T TTGTGTGTGTGTGTG 0 PASS DP=35;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:6,7:7,1 +chr5 136046402 . G A 0 PASS DP=59;GPV=1;SPV=0.0019282;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,6:10,1 +chr5 136048771 . G T 0 PASS DP=68;GPV=1;SPV=0.00091602;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,5:9,2 +chr5 136723206 . T C 0 PASS DP=22;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,3:3,1:2,2 +chr5 137065227 . C CAAA 0 PASS DP=32;GPV=1;SPV=0.36264;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:3,3:5,1 +chr5 137473356 . G A 0 PASS DP=55;GPV=1;SPV=0.00073711;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,5:6,4 +chr5 138195699 . G GTA 0 PASS DP=26;GPV=1;SPV=0.040316;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,2:4,2 +chr5 141792627 . C CAAAAAA 0 PASS DP=32;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:7,4:4,1 +chr5 144278485 . C CTT 0 PASS DP=28;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:2,7:6,1 +chr5 145152125 . C T 0 PASS DP=40;GPV=1;SPV=0.0217;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,4:6,2 +chr5 146271565 . G A 0 PASS DP=58;GPV=1;SPV=0.00029342;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:5,5:12,4 +chr5 146271566 . A T 0 PASS DP=56;GPV=1;SPV=9.1801e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:4,4:11,6 +chr5 146989276 . A G 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:9,3:12,1 +chr5 147027634 . C CA 0 PASS DP=36;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,4:3,3 +chr5 147249908 . C CA 0 PASS DP=23;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,4:2,1 +chr5 147604800 . TTTA T 0 PASS DP=46;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,9:3,4:10,5 +chr5 149809275 . A C 0 PASS DP=30;GPV=1;SPV=0.12566;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:10,3:6,3 +chr5 151238956 . T C 0 PASS DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,1:14,3 +chr5 151384249 . G A 0 PASS DP=60;GPV=1;SPV=0.0040413;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,4:13,3 +chr5 152714933 . G A 0 PASS DP=48;GPV=1;SPV=7.4643e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,8:5,4 +chr5 153648838 . A AC 0 PASS DP=38;GPV=1;SPV=0.039018;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,1:4,9 +chr5 155108106 . C A 0 PASS DP=65;GPV=1;SPV=1.5408e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:7,5:14,12 +chr5 156631460 . C CT 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,6:4,1 +chr5 157064339 . C CA 0 PASS DP=47;GPV=1;SPV=0.019016;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:9,4:4,2 +chr5 157448096 . CT C 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr5 158502028 . GTA G 0 PASS DP=42;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,2:8,6 +chr5 158586147 . C G 0 PASS DP=49;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,2:1,1:4,1 +chr5 160063966 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,5:0,4:0,1 +chr5 160075805 . TA T 0 PASS DP=25;GPV=1;SPV=0.034056;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:3,4:3,2 +chr5 160249765 . AAAATAAATAAATAAATAAAT A 0 PASS DP=38;GPV=1;SPV=0.0093762;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,3:6,5 +chr5 161177701 . G C 0 PASS DP=46;GPV=1;SPV=0.00048277;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,3:8,5 +chr5 161700455 . C T 0 PASS DP=74;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:14,2:19,4 +chr5 163329002 . ACACACACACACACACACACATC A 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr5 164428259 . A G 0 PASS DP=72;GPV=1;SPV=0.00116;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,5:9,3 +chr5 165866760 . A C 0 PASS DP=51;GPV=1;SPV=7.4709e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,4:8,10 +chr5 166426334 . ATTT A 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:8,4:1,4 +chr5 167070107 . A ATATTTATTTATT 0 PASS DP=28;GPV=1;SPV=0.036405;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:1,4:2,3 +chr5 168334430 . C A 0 PASS DP=49;GPV=1;SPV=0.0022813;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,6:7,3 +chr5 169328955 . C T 0 PASS DP=48;GPV=1;SPV=0.016081;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,5:12,2 +chr5 170918403 . T TACACACACAC 0 PASS DP=47;GPV=1;SPV=0.016633;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,6:7,3 +chr5 171276918 . TAA T 0 PASS DP=30;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:3,5:2,1 +chr5 171339649 . AT A 0 PASS DP=54;GPV=1;SPV=0.00024587;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:4,2:11,7 +chr5 172223586 . CAAAAAAAA C 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1 +chr5 172610316 . G GCACACACACACACA 0 PASS DP=32;GPV=1;SPV=0.0033988;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,5:5,2 +chr5 174382247 . C CT 0 PASS DP=33;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,4:6,4 +chr5 174818008 . G GGTGTGTGTGTGTGTGTGT 0 PASS DP=30;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:6,3:7,1 +chr5 175874420 . G A 0 PASS DP=58;GPV=1;SPV=1.0986e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,15:7,7:3,8 +chr5 175999344 . G A 0 PASS DP=22;GPV=1;SPV=0.040248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,5:5,1 +chr5 176628407 . C T 0 PASS DP=55;GPV=1;SPV=6.6996e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,6:4,6 +chr5 177854131 . G T 0 PASS DP=63;GPV=1;SPV=0.025973;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:6,5:16,1 +chr5 178530930 . C T 0 PASS DP=70;GPV=1;SPV=0.044629;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1 +chr5 178804228 . C CA 0 PASS DP=34;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,8:4,1 +chr5 178823181 . T C 0 PASS DP=39;GPV=1;SPV=0.0012285;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,6:2,2 +chr5 179156359 . A AT 0 PASS DP=35;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:7,6:4,4 +chr5 179510765 . C CA 0 PASS DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:0,3:4,1 +chr5 180360305 . C T 0 PASS DP=68;GPV=1;SPV=0.0094281;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,1:11,4 +chr5 180617169 . A G 0 PASS DP=25;GPV=1;SPV=0.093333;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr6 2326994 . TATATA T 0 PASS DP=36;GPV=1;SPV=0.39766;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,4:7,3:6,1 +chr6 5007386 . A C 0 PASS DP=46;GPV=1;SPV=0.024548;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,3:8,2 +chr6 5176066 . A AGT 0 PASS DP=59;GPV=1;SPV=0.0028726;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,15:10,11:9,4 +chr6 7021565 . TTG T 0 PASS DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,3:5,3 +chr6 7021611 . A AC 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,3:6,3 +chr6 7933569 . CT C 0 PASS DP=32;GPV=1;SPV=0.027836;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr6 8567024 . T C 0 PASS DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,1:7,7 +chr6 9525052 . AAAAAAC A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr6 9676581 . C G 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:8,1:8,7 +chr6 13409149 . G GAA 0 PASS DP=32;GPV=1;SPV=0.014666;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:4,1:0,4 +chr6 13409930 . AAAAAAAAAAAG A 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:4,1:0,7 +chr6 14858616 . T A 0 PASS DP=19;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,3:2,1:3,2 +chr6 14989974 . C CA 0 PASS DP=41;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,6:11,4 +chr6 15980662 . A C 0 PASS DP=32;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,2:3,1:2,1 +chr6 17493775 . C CA 0 PASS DP=33;GPV=1;SPV=0.0094843;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:6,7:3,4 +chr6 18887884 . TGG T 0 PASS DP=38;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:1,1:2,1 +chr6 18929526 . G GTACATATACATA 0 PASS DP=41;GPV=1;SPV=0.035015;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,1:5,4 +chr6 19174803 . CA C 0 PASS DP=35;GPV=1;SPV=0.0029252;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:3,7:6,5 +chr6 19613513 . C T 0 PASS DP=59;GPV=1;SPV=0.00019519;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:11,4:8,7 +chr6 19787417 . A ATT 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,4:4,1 +chr6 19810897 . TTA T 0 PASS DP=63;GPV=1;SPV=0.11088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,3:16,1 +chr6 21114247 . CAAAA C 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,1:2,3 +chr6 22371326 . G T 0 PASS DP=50;GPV=1;SPV=0.00034904;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:9,8:7,3 +chr6 22608659 . G A 0 PASS DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:18,4:12,1 +chr6 22849274 . A ATGTGTG 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:3,5:6,2 +chr6 22980709 . C T 0 PASS DP=55;GPV=1;SPV=9.2147e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:8,8:6,6 +chr6 23288756 . A G 0 PASS DP=21;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,3:2,2:4,1 +chr6 23288758 . A G 0 PASS DP=18;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:2,2:4,1 +chr6 26440809 . T C 0 PASS DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,2:15,2 +chr6 27485579 . CG C 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr6 27567279 . T TAAAA 0 PASS DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:7,3:4,1 +chr6 27718696 . CA C 0 PASS DP=48;GPV=1;SPV=0.076832;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,1:8,3 +chr6 27764016 . A G 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr6 28808465 . C G 0 PASS DP=49;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,3:7,8 +chr6 29123667 . C T 0 PASS DP=63;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,3:15,2 +chr6 29317941 . G GTA 0 PASS DP=35;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:12,5:2,1 +chr6 30022323 . A C 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,1:4,3 +chr6 30135216 . C CA 0 PASS DP=21;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,8:1,6:1,2 +chr6 30373939 . CTTCT C 0 PASS DP=27;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,1:6,4 +chr6 31619069 . C T 0 PASS DP=31;GPV=1;SPV=0.15398;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,1:6,3 +chr6 32392502 . A AG 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr6 33556655 . T TTG 0 PASS DP=28;GPV=1;SPV=0.057037;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,2:5,2 +chr6 34840391 . T TA 0 PASS DP=28;GPV=1;SPV=0.015182;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr6 34850013 . C G 0 PASS DP=51;GPV=1;SPV=0.0034865;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,4:7,4 +chr6 34991735 . TATATATAC T 0 PASS DP=29;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,3:4,1 +chr6 35273722 . C CA 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:7,8:3,1 +chr6 36933211 . G A 0 PASS DP=54;GPV=1;SPV=0.003791;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,4:12,5 +chr6 38830634 . CAA C 0 PASS DP=23;GPV=1;SPV=0.004902;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,2:2,2 +chr6 38873770 . C A 0 PASS DP=47;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:5,6:1,3:4,3 +chr6 39979558 . G A 0 PASS DP=52;GPV=1;SPV=7.8332e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,13:8,8:1,5 +chr6 41440255 . G T 0 PASS DP=29;GPV=1;SPV=0.030075;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:4,3:3,2 +chr6 41568407 . T C 0 PASS DP=60;GPV=1;SPV=1.1994e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:9,23:6,12:3,11 +chr6 41650573 . C CTTT 0 PASS DP=30;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:2,3:3,4 +chr6 44642499 . C T 0 PASS DP=42;GPV=1;SPV=0.00037668;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:8,3:3,6 +chr6 45302467 . C CAT 0 PASS DP=21;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,4:3,2 +chr6 46072236 . GA G 0 PASS DP=22;GPV=1;SPV=0.00021109;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:2,7:2,6:0,1 +chr6 46332313 . A AT 0 PASS DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:2,3:10,2 +chr6 48366126 . A G 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,3:14,1 +chr6 48897335 . G T 0 PASS DP=61;GPV=1;SPV=0.049719;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:21,2:11,4 +chr6 50424202 . C G 0 PASS DP=65;GPV=1;SPV=2.1474e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:9,7:9,5 +chr6 50810018 . G A 0 PASS DP=38;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,3:7,3 +chr6 51101673 . C G 0 PASS DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,5:8,1 +chr6 54317392 . C T 0 PASS DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:12,3:11,1 +chr6 54809924 . C CAAGAAAGA 0 PASS DP=27;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:6,4:5,1 +chr6 57845096 . C T 0 PASS DP=46;GPV=1;SPV=3.4748e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:4,6:7,6 +chr6 58216143 . CA C 0 PASS DP=41;GPV=1;SPV=0.00034756;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:5,10:2,2 +chr6 58236748 . G T 0 PASS DP=46;GPV=1;SPV=0.0018544;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:5,7:11,2 +chr6 58406214 . C A 0 PASS DP=56;GPV=1;SPV=0.034441;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,1:9,3 +chr6 58407963 . T TTTTATTTATTTATTTATTTATTTA 0 PASS DP=38;GPV=1;SPV=0.0079853;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:5,4:7,2 +chr6 60275841 . G A 0 PASS DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:7,5:12,2 +chr6 61316474 . G T 0 PASS DP=65;GPV=1;SPV=4.3478e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:10,3:7,11 +chr6 63259044 . A C 0 PASS DP=57;GPV=1;SPV=0.065934;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:1,1:1,1 +chr6 63600781 . C CT 0 PASS DP=36;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,4:3,3 +chr6 63834638 . C G 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,3:11,1 +chr6 63863664 . TTTTCTTTTTTC T 0 PASS DP=26;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,3:4,1 +chr6 65649137 . C CA 0 PASS DP=30;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr6 66722997 . T C 0 PASS DP=39;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:2,1:3,1 +chr6 66761648 . CATACAT C 0 PASS DP=38;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:6,2:6,6 +chr6 67787159 . G C 0 PASS DP=16;GPV=1;SPV=0.02028;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:2,5:0,1 +chr6 67827667 . A G 0 PASS DP=63;GPV=1;SPV=1.9702e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:8,5:10,8 +chr6 67947687 . G A 0 PASS DP=62;GPV=1;SPV=3.1551e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:10,11:7,6 +chr6 68956303 . G A 0 PASS DP=57;GPV=1;SPV=0.013165;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:6,5:16,4 +chr6 70234303 . AC A 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr6 70637218 . C CA 0 PASS DP=44;GPV=1;SPV=0.03818;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,4:5,1 +chr6 71020944 . G GCGCA 0 PASS DP=47;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,5:6,3:14,2 +chr6 72411671 . G A 0 PASS DP=53;GPV=1;SPV=0.010126;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:15,2:7,5 +chr6 73124976 . TATATACACAC T 0 PASS DP=20;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:0,1:2,3 +chr6 74276896 . A G 0 PASS DP=60;GPV=1;SPV=0.041988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr6 75326112 . G T 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,2:8,2 +chr6 75735448 . C CTCTCTCTCTATATATA 0 PASS DP=42;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:4,2:12,2 +chr6 76386785 . C CAAA 0 PASS DP=47;GPV=1;SPV=0.0020034;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,12:8,8:5,4 +chr6 77097105 . C T 0 PASS DP=51;GPV=1;SPV=2.8475e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,16:5,8:4,8 +chr6 77520751 . GA G 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:6,6:1,3 +chr6 78788156 . A G 0 PASS DP=19;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,3:0,2:0,1 +chr6 79739208 . TGTGTTA T 0 PASS DP=57;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:4,4:7,4 +chr6 81387847 . C T 0 PASS DP=48;GPV=1;SPV=0.0031585;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,1:5,5 +chr6 82559691 . G A 0 PASS DP=30;GPV=1;SPV=0.011166;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:2,5:6,4 +chr6 82723481 . CA C 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2 +chr6 84350069 . T C 0 PASS DP=47;GPV=1;SPV=0.00012326;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,5:5,4 +chr6 84630361 . C G 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,1:7,5 +chr6 85263223 . T TATACACATATACATATATAC 0 PASS DP=35;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,4:1,1:4,3 +chr6 85799173 . A AT 0 PASS DP=42;GPV=1;SPV=0.018226;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,4:4,1 +chr6 85918931 . C A 0 PASS DP=75;GPV=1;SPV=1.7286e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,5:8,6 +chr6 86617490 . TATATATATATAG T 0 PASS DP=31;GPV=1;SPV=0.031813;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3 +chr6 86743844 . TG T 0 PASS DP=41;GPV=1;SPV=0.018478;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,2:3,3 +chr6 89242667 . C A 0 PASS DP=46;GPV=1;SPV=0.030475;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3 +chr6 90213726 . A G 0 PASS DP=49;GPV=1;SPV=0.0015295;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:8,6:11,6 +chr6 91843111 . C T 0 PASS DP=51;GPV=1;SPV=0.03297;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:9,4:15,2 +chr6 92250287 . ATG A 0 PASS DP=44;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,5:4,3:5,2 +chr6 92413584 . AT A 0 PASS DP=49;GPV=1;SPV=0.00024826;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:3,6:3,3 +chr6 92643495 . G T 0 PASS DP=47;GPV=1;SPV=0.00012488;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:6,4:6,6 +chr6 93624766 . A AGG 0 PASS DP=30;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,6:4,1 +chr6 94088690 . T A 0 PASS DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,4:5,1 +chr6 94711582 . G T 0 PASS DP=22;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,3:5,1 +chr6 95601716 . ATTT A 0 PASS DP=21;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:1,2:4,3 +chr6 96315368 . G A 0 PASS DP=51;GPV=1;SPV=0.0003269;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,6:5,6 +chr6 96711141 . C T 0 PASS DP=30;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,4:5,3:2,1 +chr6 97660619 . T TTC 0 PASS DP=47;GPV=1;SPV=0.0001711;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,13:4,10:4,3 +chr6 98939075 . C CA 0 PASS DP=26;GPV=1;SPV=0.011858;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0 +chr6 99095148 . A G 0 PASS DP=54;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,2:4,1:3,1 +chr6 101109446 . C T 0 PASS DP=23;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:1,1:0,1 +chr6 101109450 . C T 0 PASS DP=27;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:3,1:1,1 +chr6 101133838 . C T 0 PASS DP=63;GPV=1;SPV=8.3997e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,21:7,12:7,9 +chr6 102572805 . CA C 0 PASS DP=46;GPV=1;SPV=0.00041713;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:3,5:2,1 +chr6 102720122 . A AT 0 PASS DP=59;GPV=1;SPV=4.8311e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:7,3:5,8 +chr6 103955036 . G A 0 PASS DP=51;GPV=1;SPV=4.0733e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:6,7:4,5 +chr6 105521621 . A AT 0 PASS DP=69;GPV=1;SPV=3.8197e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:8,6:14,7 +chr6 107499161 . C T 0 PASS DP=53;GPV=1;SPV=0.0035067;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:12,2:8,6 +chr6 107863971 . CGT C 0 PASS DP=23;GPV=1;SPV=0.040248;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1 +chr6 107931487 . A T 0 PASS DP=48;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:0,1:1,1 +chr6 108718547 . C CTCTCGT 0 PASS DP=35;GPV=1;SPV=0.0072348;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,6:2,3:2,3 +chr6 109409579 . G A 0 PASS DP=46;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,5:2,2:8,3 +chr6 109417385 . T A 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:0,0:1,2 +chr6 109437548 . CTTT C 0 PASS DP=19;GPV=1;SPV=0.0048077;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,5:1,3:1,2 +chr6 109822797 . A G 0 PASS DP=30;GPV=1;SPV=0.0058007;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:2,5:1,3 +chr6 110350762 . CAAAAT C 0 PASS DP=46;GPV=1;SPV=0.00038136;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,6:3,2 +chr6 113069811 . C G 0 PASS DP=58;GPV=1;SPV=3.066e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,16:2,9:5,7 +chr6 113589996 . AG A 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,2:4,3 +chr6 114750491 . C CTT 0 PASS DP=24;GPV=1;SPV=0.054945;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,8:0,4:3,4 +chr6 115825428 . A G 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,4:0,1 +chr6 118827497 . G A 0 PASS DP=50;GPV=1;SPV=0.0065856;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,5:8,2 +chr6 120460510 . GTTATTTTATTTTATTTTATTTTATT G 0 PASS DP=28;GPV=1;SPV=0.010538;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,6:6,4 +chr6 120532901 . CA C 0 PASS DP=24;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:5,5:3,1 +chr6 121355893 . C CA 0 PASS DP=38;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,7:5,2 +chr6 122846726 . A G 0 PASS DP=52;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:2,2:2,2:0,0 +chr6 123445642 . C T 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,1:5,6 +chr6 125029781 . A G 0 PASS DP=56;GPV=1;SPV=2.7317e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,22:6,9:2,13 +chr6 125788698 . A ATTTTTTT 0 PASS DP=37;GPV=1;SPV=0.0012917;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,3:4,3 +chr6 126816648 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,1:5,2 +chr6 127501003 . G A 0 PASS DP=57;GPV=1;SPV=0.0018182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,4:8,3 +chr6 128493560 . C CA 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,1:5,3 +chr6 128637917 . GTTTTTT G 0 PASS DP=21;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:3,2:3,2 +chr6 130504622 . A AT 0 PASS DP=45;GPV=1;SPV=0.0015456;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:9,10:1,3 +chr6 130680465 . CTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:1,1:2,4 +chr6 131727555 . CA C 0 PASS DP=36;GPV=1;SPV=0.020376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1 +chr6 132442627 . C T 0 PASS DP=55;GPV=1;SPV=0.0012081;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,1:5,6 +chr6 132489200 . T TA 0 PASS DP=28;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:4,5:4,2 +chr6 132505739 . T TAA 0 PASS DP=28;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,10:3,8:6,2 +chr6 132757997 . A T 0 PASS DP=26;GPV=1;SPV=0.023045;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:4,5:3,4 +chr6 133394291 . T A 0 PASS DP=26;GPV=1;SPV=0.069231;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:4,2:1,2 +chr6 133792776 . G T 0 PASS DP=46;GPV=1;SPV=0.0082071;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:5,3:8,4 +chr6 133948660 . A AAC 0 PASS DP=34;GPV=1;SPV=0.0039459;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,6:2,1 +chr6 134180871 . CA C 0 PASS DP=39;GPV=1;SPV=0.0052761;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,8:2,2 +chr6 134232429 . A G 0 PASS DP=32;GPV=1;SPV=0.044851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,8:8,2:0,6 +chr6 134497927 . C CAA 0 PASS DP=27;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:5,4:0,0 +chr6 135173464 . C G 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,2:11,3 +chr6 136744502 . A G 0 PASS DP=52;GPV=1;SPV=3.1333e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:3,8:7,4 +chr6 137898140 . C CA 0 PASS DP=57;GPV=1;SPV=8.1928e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:7,5:7,8 +chr6 138437361 . TATATATATATACAC T 0 PASS DP=22;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:3,2:6,3 +chr6 138873898 . G A 0 PASS DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,3:9,2 +chr6 139243492 . C CT 0 PASS DP=33;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,4:5,5 +chr6 139845378 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:3,5:1,3 +chr6 140361223 . TTGTGTGTGTG T 0 PASS DP=25;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:1,3:3,4 +chr6 141571986 . G T 0 PASS DP=36;GPV=1;SPV=0.001096;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,4:2,3 +chr6 141644789 . A G 0 PASS DP=35;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,3:3,1:1,2 +chr6 141919119 . C G 0 PASS DP=26;GPV=1;SPV=0.0070234;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,1:3,4 +chr6 142067416 . A T 0 PASS DP=58;GPV=1;SPV=1.2584e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:7,6:6,9 +chr6 142801413 . CAA C 0 PASS DP=23;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:2,3:3,2 +chr6 144290752 . CTTTTT C 0 PASS DP=20;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,3:2,2 +chr6 144635138 . GT G 0 PASS DP=29;GPV=1;SPV=0.011071;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:5,8:2,1 +chr6 145242149 . C T 0 PASS DP=20;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,4:0,2:0,2 +chr6 146818579 . CT C 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:2,3:4,1 +chr6 147666774 . C T 0 PASS DP=60;GPV=1;SPV=1.1994e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:9,23:6,12:3,11 +chr6 148308274 . G GCC 0 PASS DP=46;GPV=1;SPV=0.020196;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:9,1:5,4 +chr6 149253958 . AAAAGAAAG A 0 PASS DP=30;GPV=1;SPV=0.0010096;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,11:2,5:2,6 +chr6 149476819 . T C 0 PASS DP=55;GPV=1;SPV=0.04522;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,2:9,4 +chr6 150483588 . A C 0 PASS DP=18;GPV=1;SPV=0.0016865;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,8:1,3:0,5 +chr6 150483601 . T C 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr6 150688939 . A G 0 PASS DP=47;GPV=1;SPV=0.0073497;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,4:6,5 +chr6 150700933 . ATAGCTTGTAT A 0 PASS DP=32;GPV=1;SPV=0.038324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,4:7,4 +chr6 150700945 . GCTTTATTTCCCATATTTGGGTTA G 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,4:4,4 +chr6 150968807 . GC G 0 PASS DP=42;GPV=1;SPV=1.8763e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:3,13:0,5:3,8 +chr6 151605903 . T A 0 PASS DP=31;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,2:2,1:0,1 +chr6 151852639 . G GTTT 0 PASS DP=27;GPV=1;SPV=0.016983;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,9:1,5:0,4 +chr6 152364686 . G GAGGA 0 PASS DP=42;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:11,3:4,1 +chr6 153185637 . C CTTT 0 PASS DP=21;GPV=1;SPV=0.004995;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,3:0,1 +chr6 153963149 . TTCTTCTTCTTCTTCTTCTTCTTCCTTC T 0 PASS DP=24;GPV=1;SPV=0.0045767;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,4:0,2 +chr6 154003721 . C CAA 0 PASS DP=27;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,7:1,5:1,2 +chr6 154740625 . C CT 0 PASS DP=35;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,2:5,3 +chr6 155742675 . C T 0 PASS DP=57;GPV=1;SPV=0.035158;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,7:8,1 +chr6 157122423 . T A 0 PASS DP=67;GPV=1;SPV=0.0047599;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:14,3:9,3 +chr6 157263058 . C T 0 PASS DP=57;GPV=1;SPV=7.881e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:5,6:7,9 +chr6 157730215 . A T 0 PASS DP=39;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,3:1,2:2,1 +chr6 158978725 . G C 0 PASS DP=53;GPV=1;SPV=4.9545e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,16:3,7:5,9 +chr6 159547211 . C CT 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:1,1:5,5 +chr6 159654588 . C CA 0 PASS DP=48;GPV=1;SPV=0.018966;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,6:5,5:6,1 +chr6 160576410 . A G 0 PASS DP=21;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,3:0,1:0,2 +chr6 160932467 . T G 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:17,1:10,3 +chr6 161443896 . C T 0 PASS DP=51;GPV=1;SPV=0.0015405;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:8,4:10,5 +chr6 161568972 . T TA 0 PASS DP=53;GPV=1;SPV=0.0035931;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:9,3:9,4 +chr6 162650315 . C T 0 PASS DP=54;GPV=1;SPV=0.01064;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:8,2:10,3 +chr6 163846289 . GTT G 0 PASS DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:5,6:1,2 +chr6 163917572 . A C 0 PASS DP=66;GPV=1;SPV=2.0747e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,4:10,11 +chr6 164777257 . T C 0 PASS DP=61;GPV=1;SPV=2.979e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,6:11,6 +chr6 165890076 . A C 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr6 166942058 . C CTTTTTTTTTT 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1 +chr6 167175552 . G A 0 PASS DP=84;GPV=1;SPV=0.043127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:21,3:9,2 +chr6 167178468 . C T 0 PASS DP=71;GPV=1;SPV=0.0078321;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,6:11,7 +chr6 167390528 . C G 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr6 167660804 . G T 0 PASS DP=52;GPV=1;SPV=0.00035539;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,4:6,5 +chr6 167785661 . CAA C 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr6 168088144 . C T 0 PASS DP=70;GPV=1;SPV=0.00033054;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,2:10,8 +chr6 168610977 . C T 0 PASS DP=47;GPV=1;SPV=0.01301;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,2:2,4 +chr6 169900320 . GA G 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr6 170394572 . C T 0 PASS DP=54;GPV=1;SPV=0.029105;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:8,7:14,1 +chr6 170708298 . T G 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,1:4,4 +chr7 35473 . T C 0 PASS DP=33;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:6,3:9,2 +chr7 133047 . CTGT C 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,2:8,2 +chr7 1327470 . CA C 0 PASS DP=44;GPV=1;SPV=0.019243;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:10,4:7,2 +chr7 1996232 . T TC 0 PASS DP=43;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:4,4:9,1 +chr7 2867457 . CCTCT C 0 PASS DP=42;GPV=1;SPV=0.0029185;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,10:5,9:4,1 +chr7 2943771 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr7 3213222 . CAAAAA C 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr7 3269884 . G GGAAGGAAGGAAGGAAGGAAGGAAC 0 PASS DP=33;GPV=1;SPV=0.024799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,4:6,1 +chr7 3299677 . A AGCTGCTGCTGCTGCTGCTGCTGCTGCT 0 PASS DP=41;GPV=1;SPV=0.003311;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:3,2:8,7 +chr7 3992327 . C A 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3 +chr7 4965431 . C CA 0 PASS DP=35;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:6,5:3,2 +chr7 5905902 . CT C 0 PASS DP=23;GPV=1;SPV=0.02396;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,3:4,3 +chr7 6731469 . C CT 0 PASS DP=22;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,5:3,4:2,1 +chr7 6743760 . A G 0 PASS DP=54;GPV=1;SPV=0.055494;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2 +chr7 8078208 . T TAAA 0 PASS DP=22;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,4:2,1 +chr7 8787468 . C T 0 PASS DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,3:12,1 +chr7 9006021 . T TCACACACACACACACA 0 PASS DP=40;GPV=1;SPV=0.016311;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3 +chr7 9586159 . G T 0 PASS DP=45;GPV=1;SPV=0.023839;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,6:2,3:4,3 +chr7 11643605 . A G 0 PASS DP=67;GPV=1;SPV=0.096304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,3:18,1 +chr7 15564057 . GT G 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr7 16056810 . A G 0 PASS DP=40;GPV=1;SPV=0.040008;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:12,4:4,5 +chr7 16478728 . CT C 0 PASS DP=43;GPV=1;SPV=0.0083111;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:13,5:5,4 +chr7 21178080 . T A 0 PASS DP=49;GPV=1;SPV=0.00050723;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,9:5,4 +chr7 22526566 . TAAAAAAAAAAAAAA T 0 PASS DP=17;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:2,3:3,1 +chr7 22732290 . TGTGTATATATA T 0 PASS DP=36;GPV=1;SPV=0.016761;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,3:6,3 +chr7 24215816 . T A 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2 +chr7 24500287 . C CT 0 PASS DP=22;GPV=1;SPV=0.0058007;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:1,4:2,4 +chr7 24953942 . A G 0 PASS DP=54;GPV=1;SPV=0.00019158;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:7,7:6,10 +chr7 25581638 . C T 0 PASS DP=51;GPV=1;SPV=0.0074546;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,6:8,4 +chr7 26353459 . T G 0 PASS DP=24;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,2:1,3 +chr7 27705391 . A G 0 PASS DP=39;GPV=1;SPV=0.0075692;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,1:7,7 +chr7 28232988 . C G 0 PASS DP=54;GPV=1;SPV=9.3485e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,20:5,10:5,10 +chr7 28912826 . C T 0 PASS DP=29;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:2,1:4,1 +chr7 29002866 . C CA 0 PASS DP=28;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:5,6:3,1 +chr7 29688843 . G A 0 PASS DP=55;GPV=1;SPV=0.15352;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr7 30486877 . T C 0 PASS DP=35;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:0,0:12,4 +chr7 31212749 . G A 0 PASS DP=49;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,4:7,3:6,1 +chr7 32084709 . C T 0 PASS DP=36;GPV=1;SPV=0.040404;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr7 32112846 . G A 0 PASS DP=28;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,2:8,3 +chr7 32511548 . A T 0 PASS DP=58;GPV=1;SPV=2.6068e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,9:6,6 +chr7 33048178 . G T 0 PASS DP=58;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,2:5,1:1,1 +chr7 33196467 . T G 0 PASS DP=53;GPV=1;SPV=1.2409e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:5,6:9,9 +chr7 34327969 . T A 0 PASS DP=59;GPV=1;SPV=0.0098662;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,6:12,1 +chr7 34652637 . T TTAAAATAAAATAAAATAAAATAAAATAAAA 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,2:11,2 +chr7 36126869 . G A 0 PASS DP=56;GPV=1;SPV=1.7296e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:6,8:8,4 +chr7 37794892 . A AT 0 PASS DP=29;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:4,3:4,1 +chr7 38498811 . C A 0 PASS DP=45;GPV=1;SPV=2.7873e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:4,8:4,5 +chr7 39050234 . G T 0 PASS DP=58;GPV=1;SPV=0.017618;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,3:9,2 +chr7 39559112 . C CTGTG 0 PASS DP=34;GPV=1;SPV=0.013615;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,3:2,4 +chr7 40953503 . G A 0 PASS DP=56;GPV=1;SPV=0.0087781;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,6:11,1 +chr7 43898788 . AATTT A 0 PASS DP=64;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,13:8,10:7,3 +chr7 43963446 . A G 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:10,2:13,2 +chr7 46616809 . G A 0 PASS DP=52;GPV=1;SPV=0.00090437;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:5,6:14,5 +chr7 47766843 . C T 0 PASS DP=37;GPV=1;SPV=0.024476;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,8:0,2:2,6 +chr7 48051347 . A ATTTTT 0 PASS DP=17;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,5:1,2:0,3 +chr7 48309033 . G GCACACACACA 0 PASS DP=40;GPV=1;SPV=0.0030514;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,5:2,5 +chr7 49379798 . C T 0 PASS DP=46;GPV=1;SPV=0.0023233;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:8,8:4,5 +chr7 51943328 . A G 0 PASS DP=62;GPV=1;SPV=8.0475e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:4,9:11,3 +chr7 52260968 . G GT 0 PASS DP=66;GPV=1;SPV=0.00012013;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,3:12,8 +chr7 52260971 . T C 0 PASS DP=72;GPV=1;SPV=2.3095e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:8,4:13,8 +chr7 54494984 . A C 0 PASS DP=65;GPV=1;SPV=0.13498;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:21,2:15,2 +chr7 54640948 . CA C 0 PASS DP=37;GPV=1;SPV=0.045571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:13,4:3,3 +chr7 56526422 . C T 0 PASS DP=59;GPV=1;SPV=0.024581;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:14,3:13,3 +chr7 56596547 . CA C 0 PASS DP=28;GPV=1;SPV=0.0045549;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:3,4:4,2 +chr7 56621678 . C A 0 PASS DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,6:13,7 +chr7 56801360 . A G 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,1:12,3 +chr7 56814006 . C T 0 PASS DP=37;GPV=1;SPV=0.046683;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:4,2:12,3 +chr7 56883052 . G C 0 PASS DP=39;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,1:7,3 +chr7 57108080 . T C 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:3,3:7,3 +chr7 58074443 . T A 0 PASS DP=101;GPV=1;SPV=0.026749;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:27,3:18,2 +chr7 59230501 . T C 0 PASS DP=153;GPV=1;SPV=0.034532;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:30,7:22,4 +chr7 59235792 . C A 0 PASS DP=81;GPV=1;SPV=0.023086;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,4:19,3:6,1 +chr7 60949959 . C T 0 PASS DP=161;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:58,16:37,11:21,5 +chr7 60996788 . GAGATGAAA G 0 PASS DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,2:12,2 +chr7 61158914 . T C 0 PASS DP=24;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr7 61221694 . T G 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:13,4:0,0 +chr7 61384046 . G A 0 PASS DP=91;GPV=1;SPV=0.0077283;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:4,1:23,10 +chr7 61426250 . C T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:0,0:16,4 +chr7 61458723 . G A 0 PASS DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:0,2:5,3 +chr7 61488423 . C A 0 PASS DP=67;GPV=1;SPV=0.030987;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:23,4:2,0 +chr7 61491458 . C G 0 PASS DP=61;GPV=1;SPV=0.0071446;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,1:14,4 +chr7 62171994 . C A 0 PASS DP=68;GPV=1;SPV=3.3156e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:4,7:9,6 +chr7 62266337 . C A 0 PASS DP=122;GPV=1;SPV=0.038175;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:15,4:29,7 +chr7 62382114 . G A 0 PASS DP=94;GPV=1;SPV=0.045347;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,7:20,4:15,3 +chr7 63037940 . C A 0 PASS DP=58;GPV=1;SPV=2.1506e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:7,7:9,6 +chr7 63111811 . A ATTT 0 PASS DP=23;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:2,3:5,3 +chr7 63624963 . C T 0 PASS DP=59;GPV=1;SPV=0.023051;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:7,5:15,2 +chr7 63627813 . G A 0 PASS DP=50;GPV=1;SPV=0.031709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,3:5,2 +chr7 63628250 . G A 0 PASS DP=94;GPV=1;SPV=0.0063301;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:13,4:16,10 +chr7 63647439 . C A 0 PASS DP=53;GPV=1;SPV=0.035255;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:7,5:7,2 +chr7 63797093 . CA C 0 PASS DP=41;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,8:0,7:5,1 +chr7 64323008 . C T 0 PASS DP=52;GPV=1;SPV=0.00015969;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,7:7,7 +chr7 65327229 . G A 0 PASS DP=57;GPV=1;SPV=5.5291e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,4:4,5 +chr7 65505802 . T A 0 PASS DP=37;GPV=1;SPV=0.073359;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr7 66612768 . C G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,4:4,4 +chr7 67204543 . C T 0 PASS DP=42;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:2,2:14,2 +chr7 67501558 . GT G 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,3:3,3 +chr7 67734055 . CCCTTCCTTCCTTCCTTCCTT C 0 PASS DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:2,3:6,1 +chr7 67849899 . G A 0 PASS DP=18;GPV=1;SPV=0.014706;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:4,3:0,2 +chr7 68320392 . T A 0 PASS DP=45;GPV=1;SPV=3.1278e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:4,4:6,9 +chr7 68799109 . C G 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr7 68848491 . C A 0 PASS DP=51;GPV=1;SPV=0.0034541;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,7:12,5 +chr7 69039796 . GT G 0 PASS DP=38;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,6:2,5:5,1 +chr7 69339334 . C CA 0 PASS DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,1:9,4 +chr7 70043547 . CCCTTCCTTCCTT C 0 PASS DP=33;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:5,3:3,4 +chr7 70992281 . CT C 0 PASS DP=33;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:2,3:10,6 +chr7 72013247 . AT A 0 PASS DP=31;GPV=1;SPV=0.030629;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:10,7:0,1 +chr7 72941450 . T TCGAAG 0 PASS DP=43;GPV=1;SPV=6.1321e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:6,5:4,6 +chr7 73123782 . T TCTCTCTCC 0 PASS DP=75;GPV=1;SPV=0.026801;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:13,1:21,5 +chr7 73265004 . CCTCT C 0 PASS DP=22;GPV=1;SPV=0.0095694;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,1:3,4 +chr7 74167335 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr7 74221410 . CAAAAAAAAAA C 0 PASS DP=31;GPV=1;SPV=0.0098951;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:5,4:2,3 +chr7 74918935 . TTGTGTGTG T 0 PASS DP=25;GPV=1;SPV=0.0063025;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:1,3:1,1 +chr7 75457572 . C G 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:19,3:1,1 +chr7 75597739 . C CAAAAAA 0 PASS DP=30;GPV=1;SPV=0.042146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,1:3,3 +chr7 76136938 . T TA 0 PASS DP=48;GPV=1;SPV=0.021511;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:6,3:5,3 +chr7 77057397 . G A 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:16,2:19,2 +chr7 77391125 . C CAA 0 PASS DP=21;GPV=1;SPV=0.027972;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:2,4:1,1 +chr7 79136026 . AAG A 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:17,4:3,1 +chr7 79200445 . TA T 0 PASS DP=53;GPV=1;SPV=0.00011224;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,4:7,5 +chr7 81343269 . CT C 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1 +chr7 81360549 . A T 0 PASS DP=64;GPV=1;SPV=0.0087227;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:14,3:15,5 +chr7 81498637 . CT C 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:8,8:5,3 +chr7 82288424 . C T 0 PASS DP=54;GPV=1;SPV=0.3956;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,2:5,1:2,1 +chr7 82637666 . G A 0 PASS DP=61;GPV=1;SPV=1.584e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:6,8:7,5 +chr7 83246471 . T A 0 PASS DP=66;GPV=1;SPV=0.00018019;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:8,8:14,3 +chr7 84826063 . T TA 0 PASS DP=37;GPV=1;SPV=0.039412;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:3,1:6,5 +chr7 84924519 . C T 0 PASS DP=54;GPV=1;SPV=0.0010395;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:5,4:12,4 +chr7 85404044 . G GAA 0 PASS DP=41;GPV=1;SPV=0.018627;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,13:1,9:0,4 +chr7 85954185 . T C 0 PASS DP=58;GPV=1;SPV=5.8193e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:6,8:11,4 +chr7 86322822 . A G 0 PASS DP=60;GPV=1;SPV=1.9498e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:9,6:9,9 +chr7 86427667 . A T 0 PASS DP=53;GPV=1;SPV=0.030104;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,4:6,1:3,3 +chr7 88519600 . C T 0 PASS DP=66;GPV=1;SPV=0.0011403;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:8,2:12,5 +chr7 90250187 . GGA G 0 PASS DP=37;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:6,4:3,2 +chr7 91290943 . C CATATATATATATAT 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,2:3,2 +chr7 91614359 . G A 0 PASS DP=43;GPV=1;SPV=2.0286e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:5,6:2,3 +chr7 92104194 . T A 0 PASS DP=32;GPV=1;SPV=0.008837;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,2:2,4 +chr7 93456882 . C T 0 PASS DP=54;GPV=1;SPV=0.00096298;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,2:6,5 +chr7 94025917 . C CA 0 PASS DP=38;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr7 94518090 . A G 0 PASS DP=83;GPV=1;SPV=0.00035634;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:15,6:17,5 +chr7 95267489 . G A 0 PASS DP=54;GPV=1;SPV=1.5161e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:7,7:6,5 +chr7 95580042 . T C 0 PASS DP=30;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,3:1,2:0,1 +chr7 96128939 . G GCTCTCT 0 PASS DP=38;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,5:8,4:6,1 +chr7 96943707 . T TAG 0 PASS DP=41;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:1,1:3,1 +chr7 97467641 . C T 0 PASS DP=53;GPV=1;SPV=1.6688e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:12,7:2,7 +chr7 97897657 . G A 0 PASS DP=53;GPV=1;SPV=0.0022599;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:15,7:5,2 +chr7 97973032 . T G 0 PASS DP=20;GPV=1;SPV=0.041958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,3:2,2 +chr7 99205417 . A C 0 PASS DP=35;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,2:3,1:0,1 +chr7 99640436 . G A 0 PASS DP=58;GPV=1;SPV=2.6068e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,5:6,10 +chr7 100524058 . C G 0 PASS DP=76;GPV=1;SPV=0.0054478;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:12,5:16,4 +chr7 100524383 . A G 0 PASS DP=72;GPV=1;SPV=0.030584;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr7 100745033 . G A 0 PASS DP=65;GPV=1;SPV=4.5165e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,17:6,8:4,9 +chr7 100975659 . G GGAGCTTAGGGCTGGAGGGGCACAGAGA 0 PASS DP=67;GPV=1;SPV=0.019266;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:14,4:13,4 +chr7 101035091 . T G 0 PASS DP=66;GPV=1;SPV=0.02281;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:13,5:9,5 +chr7 101329607 . A AT 0 PASS DP=24;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,3:2,3 +chr7 101391892 . T TC 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr7 101427660 . T TAA 0 PASS DP=45;GPV=1;SPV=0.0016432;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:8,6:3,7 +chr7 101740758 . C CA 0 PASS DP=40;GPV=1;SPV=0.02882;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,6:8,5:6,1 +chr7 102497912 . G A 0 PASS DP=24;GPV=1;SPV=0.018307;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,3:4,3 +chr7 102520100 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr7 102580842 . CA C 0 PASS DP=44;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:11,4:0,0 +chr7 102630085 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr7 103603023 . C A 0 PASS DP=50;GPV=1;SPV=0.025988;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:13,1:4,3 +chr7 103817937 . C CA 0 PASS DP=38;GPV=1;SPV=0.022239;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:8,3:4,2 +chr7 105247527 . CATAA C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr7 105645640 . C CA 0 PASS DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:3,3:1,6 +chr7 107249690 . TTGTG T 0 PASS DP=24;GPV=1;SPV=0.02028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:1,4:1,3 +chr7 109508052 . AAAG A 0 PASS DP=54;GPV=1;SPV=0.00076672;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,12:4,5:7,7 +chr7 113086195 . G C 0 PASS DP=41;GPV=1;SPV=0.042105;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,3:2,2:3,1 +chr7 114051547 . G C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr7 115399375 . A G 0 PASS DP=38;GPV=1;SPV=0.00013159;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:6,3:1,5 +chr7 115439497 . G T 0 PASS DP=21;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:1,2:2,3 +chr7 115974451 . A T 0 PASS DP=27;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:1,2:2,3 +chr7 117027518 . G GTA 0 PASS DP=46;GPV=1;SPV=0.047173;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,4:9,1 +chr7 119382397 . A G 0 PASS DP=62;GPV=1;SPV=0.00031989;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,5:6,3 +chr7 120503385 . T TGAGAGAGAGAGA 0 PASS DP=49;GPV=1;SPV=0.032166;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,7:10,6:8,1 +chr7 121867378 . G A 0 PASS DP=73;GPV=1;SPV=1.537e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:16,11:6,8 +chr7 121892679 . CATATATAT C 0 PASS DP=24;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,2:4,3 +chr7 124387962 . C CT 0 PASS DP=35;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr7 125127127 . TAC T 0 PASS DP=40;GPV=1;SPV=0.0028678;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:2,3:7,8 +chr7 125366962 . G T 0 PASS DP=54;GPV=1;SPV=8.5692e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,6:3,6 +chr7 127214689 . G A 0 PASS DP=51;GPV=1;SPV=0.029272;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr7 127579933 . T C 0 PASS DP=59;GPV=1;SPV=1.944e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:7,6:7,9 +chr7 130451025 . A T 0 PASS DP=36;GPV=1;SPV=0.041502;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,3:6,2:0,1 +chr7 130545175 . C T 0 PASS DP=44;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,2:4,1:1,1 +chr7 134147434 . C CA 0 PASS DP=39;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,9:7,4:5,5 +chr7 135791446 . G GTT 0 PASS DP=25;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,3:5,2 +chr7 137126173 . TAAAAAAA T 0 PASS DP=23;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:4,3:2,1 +chr7 137280871 . C CA 0 PASS DP=42;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,6:3,1 +chr7 138700714 . A C 0 PASS DP=62;GPV=1;SPV=0.096616;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:13,2:13,1 +chr7 139385311 . CTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:6,8:1,2 +chr7 141330084 . C CT 0 PASS DP=46;GPV=1;SPV=0.00094404;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:5,5:8,3 +chr7 141454604 . T C 0 PASS DP=39;GPV=1;SPV=0.037417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,1:5,5 +chr7 143572908 . C T 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,3:2,1 +chr7 144237581 . A C 0 PASS DP=177;GPV=1;SPV=0.0069741;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:65,18:25,6:40,12 +chr7 145629802 . G A 0 PASS DP=47;GPV=1;SPV=8.6732e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:4,9:7,7 +chr7 145806346 . G A 0 PASS DP=56;GPV=1;SPV=0.00017259;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,3:7,6 +chr7 146358022 . T TTTTA 0 PASS DP=47;GPV=1;SPV=0.0082728;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:7,7:6,3 +chr7 146572264 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.049536;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:3,8:1,1 +chr7 147547712 . G A 0 PASS DP=55;GPV=1;SPV=0.00044867;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,8:8,2 +chr7 147575107 . A ATATG 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,2:10,3 +chr7 147659905 . C T 0 PASS DP=63;GPV=1;SPV=5.4178e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,20:9,10:7,10 +chr7 148141034 . G A 0 PASS DP=66;GPV=1;SPV=0.022533;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:9,1:18,4 +chr7 148247629 . T C 0 PASS DP=45;GPV=1;SPV=0.0041892;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,3:6,4 +chr7 148598763 . TAGAGAG T 0 PASS DP=21;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,2:0,1:0,1 +chr7 148751563 . G T 0 PASS DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:1,7:4,2 +chr7 149215195 . AT A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,3:8,1 +chr7 149979189 . G C 0 PASS DP=73;GPV=1;SPV=0.0095351;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,1:18,5 +chr7 150072489 . C T 0 PASS DP=24;GPV=1;SPV=0.048122;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,6:3,2 +chr7 150165496 . A G 0 PASS DP=40;GPV=1;SPV=0.0014508;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,9:1,4:6,5 +chr7 150774725 . C CAA 0 PASS DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:2,4:4,1 +chr7 151738278 . T C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr7 152693656 . T C 0 PASS DP=45;GPV=1;SPV=0.040169;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,2:8,2 +chr7 153303161 . G A 0 PASS DP=26;GPV=1;SPV=0.066403;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,4:7,1 +chr7 153705837 . C T 0 PASS DP=50;GPV=1;SPV=0.029503;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,5:7,2 +chr7 153730136 . G A 0 PASS DP=64;GPV=1;SPV=0.043789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,4:10,1 +chr7 154096293 . C T 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:13,1:4,4 +chr7 155180011 . TAAAAA T 0 PASS DP=24;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:5,5:2,1 +chr7 155348782 . TAG T 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,4:2,2 +chr7 155348793 . CACATAG C 0 PASS DP=30;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:11,4:1,2 +chr7 155348801 . G T 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:11,4:2,2 +chr7 155348826 . C T 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:10,5:1,2 +chr7 155348831 . TAGAGCACTCATAGAG T 0 PASS DP=24;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:9,5:0,2 +chr7 155919078 . C CGTGTGTGTGTGT 0 PASS DP=29;GPV=1;SPV=0.023736;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,10:2,9:1,1 +chr7 156400721 . C CTTT 0 PASS DP=16;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:1,1:2,1 +chr7 156610722 . C T 0 PASS DP=58;GPV=1;SPV=0.00015824;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,5:9,7 +chr7 157954709 . C T 0 PASS DP=56;GPV=1;SPV=0.00014422;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:5,6:12,5 +chr7 157995006 . T C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr7 158045866 . T C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr8 1081796 . C T 0 PASS DP=45;GPV=1;SPV=2.0163e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,16:6,11:5,5 +chr8 1283033 . G A 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:4,4:1,3 +chr8 1456851 . T TGTGCCAGGCC 0 PASS DP=56;GPV=1;SPV=0.0154;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:15,4:7,5 +chr8 1609424 . T C 0 PASS DP=28;GPV=1;SPV=0.062963;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,4:7,1 +chr8 2211434 . G T 0 PASS DP=43;GPV=1;SPV=0.0012045;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:2,8:8,1 +chr8 2470759 . A T 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chr8 2623407 . GAGAGCGCTGAGCGCCA G 0 PASS DP=65;GPV=1;SPV=0.0072729;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,1:9,6 +chr8 3175483 . TCCTGCCTG T 0 PASS DP=27;GPV=1;SPV=0.01093;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:1,1:5,9 +chr8 3249798 . G A 0 PASS DP=60;GPV=1;SPV=9.7202e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:10,8:4,8 +chr8 3720621 . A T 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,4:9,4 +chr8 3819560 . A T 0 PASS DP=42;GPV=1;SPV=0.013669;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3 +chr8 5246465 . G T 0 PASS DP=24;GPV=1;SPV=0.027668;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1 +chr8 5308824 . A G 0 PASS DP=71;GPV=1;SPV=6.1846e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,9:9,6 +chr8 5766212 . G A 0 PASS DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:9,2:9,7 +chr8 7294087 . A G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr8 7423063 . T C 0 PASS DP=81;GPV=1;SPV=0.026525;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:22,6:9,5 +chr8 7469467 . C A 0 PASS DP=158;GPV=1;SPV=0.030329;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:32,8:32,9 +chr8 7885678 . G A 0 PASS DP=22;GPV=1;SPV=0.048872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:3,2:5,3 +chr8 8066110 . T G 0 PASS DP=186;GPV=1;SPV=0.021565;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:73,11:29,9:44,2 +chr8 11627296 . G A 0 PASS DP=46;GPV=1;SPV=0.042832;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,3:8,4 +chr8 11641293 . C T 0 PASS DP=51;GPV=1;SPV=0.0021522;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:8,3:6,3 +chr8 12176130 . G T 0 PASS DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:4,1:27,6 +chr8 12191738 . A G 0 PASS DP=62;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:11,2:12,6 +chr8 12415019 . T C 0 PASS DP=132;GPV=1;SPV=0.0093436;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:50,18:35,12:15,6 +chr8 12504775 . G T 0 PASS DP=163;GPV=1;SPV=0.025272;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:31,7:35,1 +chr8 12524232 . C T 0 PASS DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:12,1:11,7 +chr8 12550602 . C A 0 PASS DP=223;GPV=1;SPV=0.021273;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:85,21:41,11:44,10 +chr8 12551039 . G A 0 PASS DP=234;GPV=1;SPV=0.020361;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:92,22:42,13:50,9 +chr8 12563407 . T C 0 PASS DP=264;GPV=1;SPV=0.029034;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:114,20:47,8:67,12 +chr8 12596345 . C T 0 PASS DP=253;GPV=1;SPV=0.045664;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:104,17:64,12:40,5 +chr8 12596504 . C A 0 PASS DP=267;GPV=1;SPV=0.00016521;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:94,30:47,14:47,16 +chr8 13248244 . C G 0 PASS DP=59;GPV=1;SPV=0.0016044;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,5:12,4 +chr8 14408969 . GTGCA G 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,3:14,1 +chr8 14519067 . TA T 0 PASS DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,2:15,4 +chr8 14575913 . C CAA 0 PASS DP=29;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:4,6:1,1 +chr8 14762624 . C A 0 PASS DP=61;GPV=1;SPV=1.7819e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:6,6:8,8 +chr8 15292481 . G A 0 PASS DP=40;GPV=1;SPV=0.00048101;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:5,9:4,3 +chr8 15443336 . T TTG 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,2:3,3 +chr8 16803010 . A C 0 PASS DP=53;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:1,3:1,1:0,2 +chr8 16944916 . T A 0 PASS DP=76;GPV=1;SPV=0.01047;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,2:8,5 +chr8 17322942 . T A 0 PASS DP=37;GPV=1;SPV=0.01132;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr8 17439426 . AT A 0 PASS DP=48;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,4:11,1:6,3 +chr8 21095590 . A T 0 PASS DP=69;GPV=1;SPV=7.4135e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:4,7:8,4 +chr8 21529509 . A AGT 0 PASS DP=53;GPV=1;SPV=0.022922;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:3,3:18,2 +chr8 21533378 . GAA G 0 PASS DP=30;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:9,4:1,2 +chr8 21772682 . C T 0 PASS DP=57;GPV=1;SPV=0.00032906;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:4,2:8,9 +chr8 23480847 . G A 0 PASS DP=64;GPV=1;SPV=0.00011387;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,6:8,5 +chr8 24218765 . T C 0 PASS DP=66;GPV=1;SPV=6.4776e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:5,7:7,8 +chr8 24548351 . C CA 0 PASS DP=29;GPV=1;SPV=0.0068026;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,6:4,5:0,1 +chr8 25912466 . G GCACACACACA 0 PASS DP=26;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,6:4,5:1,1 +chr8 26680339 . CTCTCTCTTTCTT C 0 PASS DP=37;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:4,1:14,3 +chr8 26691587 . A G 0 PASS DP=40;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,6:2,3:7,3 +chr8 27200594 . GCA G 0 PASS DP=42;GPV=1;SPV=0.022413;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,3:6,5 +chr8 27251900 . G A 0 PASS DP=66;GPV=1;SPV=0.01219;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,2:14,4 +chr8 27257459 . AACACACAC A 0 PASS DP=39;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,8:1,3:5,5 +chr8 28022157 . CT C 0 PASS DP=21;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,2:1,2 +chr8 28293162 . TA T 0 PASS DP=35;GPV=1;SPV=0.059571;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,6:7,2 +chr8 28320096 . T C 0 PASS DP=19;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:2,1:4,1 +chr8 30375913 . G GAC 0 PASS DP=45;GPV=1;SPV=0.00074811;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,9:4,5:2,4 +chr8 30661150 . T A 0 PASS DP=67;GPV=1;SPV=0.0029095;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:14,4:14,5 +chr8 31096744 . T G 0 PASS DP=40;GPV=1;SPV=0.00021796;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:4,3:6,7 +chr8 32132185 . T C 0 PASS DP=70;GPV=1;SPV=4.3453e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:11,8:7,5 +chr8 32662515 . G A 0 PASS DP=62;GPV=1;SPV=1.8159e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:11,8:9,10 +chr8 33195381 . A ATG 0 PASS DP=32;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:4,4:4,3 +chr8 33519082 . TC T 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:17,2:8,3 +chr8 34484897 . C T 0 PASS DP=62;GPV=1;SPV=0.006844;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,3:13,4 +chr8 34728271 . G C 0 PASS DP=58;GPV=1;SPV=0.0056882;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,3:9,3 +chr8 35474387 . A G 0 PASS DP=75;GPV=1;SPV=0.00020504;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:14,8:16,6 +chr8 36156511 . G T 0 PASS DP=46;GPV=1;SPV=0.02969;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,1:8,3 +chr8 36599288 . AATATAT A 0 PASS DP=25;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,6:1,5:3,1 +chr8 43520908 . G T 0 PASS DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:19,4:11,2 +chr8 43844204 . G A 0 PASS DP=65;GPV=1;SPV=6.2649e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:10,4:9,12 +chr8 43850604 . G T 0 PASS DP=52;GPV=1;SPV=0.03925;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,2:10,2 +chr8 44080375 . C A 0 PASS DP=22;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr8 44316208 . G C 0 PASS DP=20;GPV=1;SPV=0.026006;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr8 44523758 . G T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr8 45339224 . A G 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,5:0,1 +chr8 46226517 . G A 0 PASS DP=62;GPV=1;SPV=0.0042664;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,3:8,1 +chr8 47066875 . C CAA 0 PASS DP=31;GPV=1;SPV=0.015238;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:7,8:2,1 +chr8 48017378 . C CT 0 PASS DP=54;GPV=1;SPV=0.011495;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,6:11,1 +chr8 50660426 . GAAGA G 0 PASS DP=26;GPV=1;SPV=0.028571;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,4:0,4:0,0 +chr8 51217130 . G A 0 PASS DP=52;GPV=1;SPV=3.8791e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:3,10:9,5 +chr8 51356497 . T TA 0 PASS DP=42;GPV=1;SPV=0.00014733;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,14:2,11:6,3 +chr8 51397755 . CT C 0 PASS DP=40;GPV=1;SPV=0.0009828;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5 +chr8 53451451 . C A 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,1:11,3 +chr8 53468932 . G A 0 PASS DP=52;GPV=1;SPV=0.00084928;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,4:9,5 +chr8 53706295 . C T 0 PASS DP=65;GPV=1;SPV=3.548e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:12,10:7,8 +chr8 54216289 . C T 0 PASS DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,3:13,3 +chr8 55552407 . C T 0 PASS DP=57;GPV=1;SPV=4.8916e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:8,3:9,10 +chr8 55746317 . C CAAAA 0 PASS DP=18;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,8:0,7:1,1 +chr8 56082376 . T TTTTG 0 PASS DP=51;GPV=1;SPV=0.032696;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:5,1:7,6 +chr8 56137576 . C T 0 PASS DP=47;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,4:8,2:6,2 +chr8 56837298 . A T 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,3:9,1 +chr8 58078547 . C CTT 0 PASS DP=22;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr8 60192939 . A G 0 PASS DP=41;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:1,4:1,3:0,1 +chr8 60293496 . A G 0 PASS DP=60;GPV=1;SPV=1.0635e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:9,5:8,10 +chr8 60391531 . C CAA 0 PASS DP=40;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:7,3:7,2 +chr8 63551197 . CA C 0 PASS DP=34;GPV=1;SPV=0.20221;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,7:4,5:4,2 +chr8 64075846 . C CT 0 PASS DP=56;GPV=1;SPV=0.019655;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,7:14,6:10,1 +chr8 64621734 . A AT 0 PASS DP=42;GPV=1;SPV=0.0041541;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,4:5,4 +chr8 64689465 . C T 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:17,3:13,1 +chr8 66285220 . C A 0 PASS DP=47;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,2:5,1:2,1 +chr8 66677212 . G T 0 PASS DP=53;GPV=1;SPV=5.9904e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:4,6:9,9 +chr8 69729446 . CAA C 0 PASS DP=26;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:2,3:2,2 +chr8 70442097 . G GA 0 PASS DP=35;GPV=1;SPV=0.058442;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr8 70493053 . C T 0 PASS DP=54;GPV=1;SPV=0.0012176;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:8,3:6,9 +chr8 71790704 . CA C 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr8 72151514 . T C 0 PASS DP=41;GPV=1;SPV=0.02002;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,4:4,5 +chr8 72182016 . T TAGATAGATGATA 0 PASS DP=52;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,10:3,5:1,5 +chr8 72197763 . CAT C 0 PASS DP=49;GPV=1;SPV=0.05154;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,3:15,2 +chr8 74401141 . A G 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,2:10,2 +chr8 75102759 . C T 0 PASS DP=24;GPV=1;SPV=0.31818;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,2:1,1:4,1 +chr8 75105266 . T A 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,1:5,3 +chr8 77785927 . G A 0 PASS DP=56;GPV=1;SPV=0.00162;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:6,1:6,4 +chr8 77824395 . C A 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:4,3:13,1 +chr8 78843814 . C CA 0 PASS DP=53;GPV=1;SPV=0.0432;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:8,3:13,1 +chr8 79688530 . TA T 0 PASS DP=51;GPV=1;SPV=0.016731;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,1:7,4 +chr8 81726706 . C CTT 0 PASS DP=19;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:3,6:0,1 +chr8 82384510 . A G 0 PASS DP=51;GPV=1;SPV=5.2411e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:5,7:6,6 +chr8 85567765 . CAT C 0 PASS DP=54;GPV=1;SPV=0.047273;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,2:8,2 +chr8 85575297 . T C 0 PASS DP=56;GPV=1;SPV=8.756e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:5,7:11,4 +chr8 85650554 . C T 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr8 85653042 . C G 0 PASS DP=482;GPV=1;SPV=0.03412;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:202,26:84,12:118,14 +chr8 85769882 . C T 0 PASS DP=329;GPV=1;SPV=0.03173;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:133,24:4,1:129,23 +chr8 85774081 . G T 0 PASS DP=1398;GPV=1;SPV=0.037656;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:682:608,73:284,20:324,53 +chr8 85774470 . A T 0 PASS DP=131;GPV=1;SPV=0.0052014;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:67,14:6,6:61,8 +chr8 85963127 . A AGTGTGT 0 PASS DP=52;GPV=1;SPV=0.0027697;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:9,5:2,5 +chr8 87753303 . G A 0 PASS DP=19;GPV=1;SPV=0.014884;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,5:1,2 +chr8 88578361 . G A 0 PASS DP=71;GPV=1;SPV=2.3986e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:8,11:11,10 +chr8 88647557 . G T 0 PASS DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,2:13,4 +chr8 90416172 . A AAAAAAAACAAAAAC 0 PASS DP=29;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:7,1:6,3 +chr8 90721358 . C A 0 PASS DP=56;GPV=1;SPV=0.00014106;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:11,8:8,6 +chr8 93394841 . C CG 0 PASS DP=65;GPV=1;SPV=0.0011596;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:9,5:13,3 +chr8 93453316 . C A 0 PASS DP=52;GPV=1;SPV=0.01454;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,2:10,4 +chr8 96854555 . A C 0 PASS DP=34;GPV=1;SPV=0.025565;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3 +chr8 97998519 . CA C 0 PASS DP=31;GPV=1;SPV=0.011868;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,10:2,8:2,2 +chr8 98133049 . C CA 0 PASS DP=22;GPV=1;SPV=0.017225;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr8 98224755 . C CTT 0 PASS DP=20;GPV=1;SPV=0.0075758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,6:0,4:0,2 +chr8 99772206 . C CT 0 PASS DP=32;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:3,4:8,5 +chr8 101025452 . C CT 0 PASS DP=25;GPV=1;SPV=0.016601;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,3:3,1 +chr8 101196244 . T TATGG 0 PASS DP=55;GPV=1;SPV=0.047969;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,4:6,2 +chr8 101515176 . G GCACACACACA 0 PASS DP=29;GPV=1;SPV=0.03733;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:3,5:2,1 +chr8 102396661 . CACACATAT C 0 PASS DP=55;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:14,10:8,5:6,5 +chr8 103059898 . C A 0 PASS DP=42;GPV=1;SPV=0.011905;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,3:0,2:0,1 +chr8 103081487 . C CA 0 PASS DP=42;GPV=1;SPV=0.015475;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3 +chr8 104118370 . G GT 0 PASS DP=46;GPV=1;SPV=0.01322;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:7,5:5,3 +chr8 105330625 . T C 0 PASS DP=23;GPV=1;SPV=0.022704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,2:3,3 +chr8 108098163 . G GGAAA 0 PASS DP=34;GPV=1;SPV=0.027634;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,4:2,4:0,0 +chr8 108608315 . G A 0 PASS DP=35;GPV=1;SPV=0.016254;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,5:0,3:5,2 +chr8 111208276 . CAT C 0 PASS DP=22;GPV=1;SPV=0.031702;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,6:2,4:0,2 +chr8 111492590 . G GT 0 PASS DP=65;GPV=1;SPV=0.00024776;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,8:12,2 +chr8 111934396 . TA T 0 PASS DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:15,2:13,4 +chr8 113327769 . TA T 0 PASS DP=77;GPV=1;SPV=0.01107;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,5:17,6 +chr8 113984641 . G A 0 PASS DP=25;GPV=1;SPV=0.017534;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:0,1:2,4 +chr8 116508940 . T TTGTGTG 0 PASS DP=42;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:5,5:4,2 +chr8 116756383 . A G 0 PASS DP=50;GPV=1;SPV=0.023708;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:13,3:9,3 +chr8 117052992 . C T 0 PASS DP=74;GPV=1;SPV=2.2234e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:13,9:9,8 +chr8 119498425 . TATATATATATGGGAAG T 0 PASS DP=26;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,2:5,7 +chr8 119498452 . CAA C 0 PASS DP=27;GPV=1;SPV=0.0055997;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,2:4,7 +chr8 122382785 . G A 0 PASS DP=60;GPV=1;SPV=2.9161e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,15:7,9:8,6 +chr8 122394427 . A G 0 PASS DP=42;GPV=1;SPV=0.0064629;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,15:8,10:6,5 +chr8 122591787 . G C 0 PASS DP=53;GPV=1;SPV=0.026826;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,8:10,2 +chr8 124399901 . G T 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,3:3,5 +chr8 124399913 . TCTTA T 0 PASS DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,2:4,8 +chr8 126682726 . G A 0 PASS DP=60;GPV=1;SPV=0.049272;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,2:7,3 +chr8 126682727 . A C 0 PASS DP=62;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,3:7,3 +chr8 127984837 . TTTTCTTTCTTTCTTTC T 0 PASS DP=47;GPV=1;SPV=0.032371;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:3,3:13,3 +chr8 127985196 . G A 0 PASS DP=48;GPV=1;SPV=0.00049976;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:9,5:6,5 +chr8 128710036 . A C 0 PASS DP=28;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2 +chr8 132242402 . C T 0 PASS DP=65;GPV=1;SPV=1.5408e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:9,5:12,12 +chr8 132409460 . T TA 0 PASS DP=37;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:8,5:7,2 +chr8 133977912 . A AGTGTGT 0 PASS DP=41;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:6,4:6,3 +chr8 135402902 . A T 0 PASS DP=60;GPV=1;SPV=1.6444e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:4,3:4,6 +chr8 135691606 . TA T 0 PASS DP=43;GPV=1;SPV=0.0015637;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:5,6:7,1 +chr8 135769197 . G T 0 PASS DP=36;GPV=1;SPV=0.020376;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,3:7,4 +chr8 136020188 . G A 0 PASS DP=56;GPV=1;SPV=0.00014106;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:8,11:11,3 +chr8 136702035 . T G 0 PASS DP=25;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:4,1:3,1 +chr8 136891951 . T G 0 PASS DP=71;GPV=1;SPV=1.1868e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:8,7:5,15 +chr8 137247376 . C T 0 PASS DP=46;GPV=1;SPV=4.0261e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,11:8,3 +chr8 137618002 . T C 0 PASS DP=59;GPV=1;SPV=0.0051097;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:10,2:10,4 +chr8 137962213 . T A 0 PASS DP=61;GPV=1;SPV=7.1707e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:8,8:6,8 +chr8 138066493 . ATATATATATATATT A 0 PASS DP=25;GPV=1;SPV=0.014142;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,3:2,3 +chr8 138281099 . GA G 0 PASS DP=64;GPV=1;SPV=0.022285;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:12,2:14,3 +chr8 138309986 . C G 0 PASS DP=59;GPV=1;SPV=1.0935e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,3:7,11 +chr8 140502381 . C CA 0 PASS DP=48;GPV=1;SPV=0.00706;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:8,5:11,3 +chr8 141497158 . C T 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:2,1:4,1 +chr8 141813792 . T C 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr8 142222102 . C CATT 0 PASS DP=28;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,5:0,3:0,2 +chr8 142483734 . A G 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr8 142589725 . G C 0 PASS DP=20;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:6,2:0,0 +chr8 143728958 . C T 0 PASS DP=66;GPV=1;SPV=4.15e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,4:7,7 +chr9 141308 . T A 0 PASS DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:3,1:4,4 +chr9 448271 . G T 0 PASS DP=56;GPV=1;SPV=0.0088091;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:5,2:13,3 +chr9 2686086 . C CATAT 0 PASS DP=22;GPV=1;SPV=0.021053;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,4:0,0 +chr9 6176302 . A T 0 PASS DP=45;GPV=1;SPV=0.04724;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,4:4,3:3,1 +chr9 6820714 . CTTT C 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr9 8483801 . CAA C 0 PASS DP=50;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:1,7:1,2:0,5 +chr9 9352327 . A G 0 PASS DP=50;GPV=1;SPV=0.016809;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,6:10,3:1,3 +chr9 10643562 . CT C 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,1:12,3 +chr9 10962039 . A AC 0 PASS DP=47;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,5:0,2:6,3 +chr9 11220595 . TA T 0 PASS DP=57;GPV=1;SPV=0.0062893;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:4,3:13,2 +chr9 12587153 . G T 0 PASS DP=45;GPV=1;SPV=0.019411;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:9,5:9,9 +chr9 12677964 . T A 0 PASS DP=53;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:8,1:6,3 +chr9 12677966 . A AATAAAAT 0 PASS DP=55;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,4:8,1:6,3 +chr9 13418779 . A G 0 PASS DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:13,1:6,3 +chr9 13629642 . G T 0 PASS DP=46;GPV=1;SPV=0.00077986;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,3:8,5 +chr9 14417774 . G GT 0 PASS DP=32;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:10,7:0,2 +chr9 15494565 . CA C 0 PASS DP=20;GPV=1;SPV=0.037112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:2,6:2,1 +chr9 15569846 . C A 0 PASS DP=53;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,3:0,0:2,3 +chr9 17764719 . G C 0 PASS DP=34;GPV=1;SPV=0.01205;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:0,1:9,6 +chr9 18626916 . T C 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,1:4,4 +chr9 19794596 . T TAA 0 PASS DP=41;GPV=1;SPV=0.014448;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,12:1,9:3,3 +chr9 19812178 . T A 0 PASS DP=70;GPV=1;SPV=0.014039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:17,2:9,3 +chr9 20679121 . ATGTGTGTG A 0 PASS DP=35;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:8,3:3,1 +chr9 20778345 . G A 0 PASS DP=35;GPV=1;SPV=0.00056446;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:3,5:4,10 +chr9 23936282 . T C 0 PASS DP=46;GPV=1;SPV=1.259e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:1,3:8,8 +chr9 23951283 . C T 0 PASS DP=54;GPV=1;SPV=0.011461;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:14,3:7,3 +chr9 24577022 . T C 0 PASS DP=53;GPV=1;SPV=0.010223;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,5:9,3 +chr9 25055019 . A T 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:4,4:2,1 +chr9 25388030 . G T 0 PASS DP=63;GPV=1;SPV=0.011486;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,3:13,2 +chr9 25574963 . CT C 0 PASS DP=35;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,16:2,12:4,4 +chr9 26083642 . G GT 0 PASS DP=27;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:5,5:2,4 +chr9 30749255 . G T 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr9 31238476 . C T 0 PASS DP=51;GPV=1;SPV=9.6614e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,5:3,4 +chr9 31379009 . C T 0 PASS DP=61;GPV=1;SPV=0.045513;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:11,1:14,3 +chr9 32584663 . A G 0 PASS DP=44;GPV=1;SPV=0.044088;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr9 33713898 . T TA 0 PASS DP=18;GPV=1;SPV=0.00761;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:2,8:0,1:2,7 +chr9 33856888 . CTTTTT C 0 PASS DP=23;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:3,3:1,2 +chr9 34166012 . C CT 0 PASS DP=28;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:4,5:4,1 +chr9 35030581 . A AT 0 PASS DP=42;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,9:2,4:6,5 +chr9 35228740 . G A 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,1:9,3 +chr9 38261077 . T C 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:2,1:8,4 +chr9 38838402 . T A 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1 +chr9 38991273 . C T 0 PASS DP=171;GPV=1;SPV=0.027492;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:62,17:31,8:31,9 +chr9 38993510 . G A 0 PASS DP=231;GPV=1;SPV=0.0021265;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:82,25:43,11:39,14 +chr9 38998991 . T C 0 PASS DP=156;GPV=1;SPV=0.047895;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:28,7:32,7 +chr9 39013407 . G A 0 PASS DP=164;GPV=1;SPV=0.015148;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:34,3:41,13 +chr9 39045534 . T G 0 PASS DP=164;GPV=1;SPV=0.00056973;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:56,18:26,13:30,5 +chr9 39051047 . T C 0 PASS DP=65;GPV=1;SPV=0.021208;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,6:13,3 +chr9 39113991 . TACAC T 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,3:9,1 +chr9 39179286 . T TACACACAC 0 PASS DP=24;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,3:4,1 +chr9 39499487 . A G 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr9 39517006 . C G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 39520803 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chr9 39557320 . T A 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,3:1,2:4,1 +chr9 39626787 . C G 0 PASS DP=129;GPV=1;SPV=0.035593;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,15:26,8:29,7 +chr9 39817326 . AT A 0 PASS DP=115;GPV=1;SPV=0.045271;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,9:20,1 +chr9 40016751 . C CT 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,1:2,3 +chr9 40164578 . C A 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,2:8,5 +chr9 40316090 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 40325426 . A G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr9 40379276 . G A 0 PASS DP=76;GPV=1;SPV=0.045291;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,2:12,6 +chr9 40383552 . T C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3 +chr9 40389076 . T C 0 PASS DP=71;GPV=1;SPV=0.0062875;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:13,6:15,9 +chr9 40390275 . G C 0 PASS DP=26;GPV=1;SPV=0.028009;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,2:5,6 +chr9 40412716 . T TA 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:0,0:6,4 +chr9 40577105 . C A 0 PASS DP=56;GPV=1;SPV=0.019692;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,3:9,4 +chr9 40706905 . CTT C 0 PASS DP=24;GPV=1;SPV=0.010883;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:0,3:3,2 +chr9 40810927 . T G 0 PASS DP=51;GPV=1;SPV=0.0030131;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:12,5:3,1 +chr9 40907626 . C T 0 PASS DP=140;GPV=1;SPV=0.030133;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:58,12:28,3:30,9 +chr9 40911723 . G A 0 PASS DP=117;GPV=1;SPV=0.0072137;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:15,7:26,8 +chr9 40913616 . G A 0 PASS DP=172;GPV=1;SPV=0.032141;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:35,6:36,13 +chr9 40957130 . A G 0 PASS DP=243;GPV=1;SPV=0.0063211;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:94,23:45,12:49,11 +chr9 40986021 . A AT 0 PASS DP=107;GPV=1;SPV=0.029076;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:15,3:21,8 +chr9 40992886 . C A 0 PASS DP=134;GPV=1;SPV=0.045651;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:21,5:28,4 +chr9 40993289 . C CA 0 PASS DP=129;GPV=1;SPV=0.010922;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:48,15:21,5:27,10 +chr9 41043749 . C T 0 PASS DP=89;GPV=1;SPV=0.00090839;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:7,5:20,12 +chr9 41051859 . T C 0 PASS DP=94;GPV=1;SPV=0.036533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:14,2:21,9 +chr9 41119368 . C T 0 PASS DP=123;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:29,5:20,1 +chr9 41209773 . G A 0 PASS DP=40;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,3:9,3 +chr9 41262200 . C G 0 PASS DP=175;GPV=1;SPV=0.023539;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:27,5:45,5 +chr9 41291398 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr9 41496373 . G GAAAA 0 PASS DP=40;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:7,2:7,2 +chr9 41506780 . C T 0 PASS DP=56;GPV=1;SPV=0.14256;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:17,1:14,3 +chr9 41543621 . G T 0 PASS DP=36;GPV=1;SPV=0.034946;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,1:5,4 +chr9 41573276 . A G 0 PASS DP=61;GPV=1;SPV=0.028928;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:13,6:18,1 +chr9 41575110 . C T 0 PASS DP=119;GPV=1;SPV=0.0018877;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:15,7:33,4 +chr9 41627594 . G A 0 PASS DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,5:5,1 +chr9 41668607 . T C 0 PASS DP=81;GPV=1;SPV=0.046205;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:16,4:23,4 +chr9 41668787 . G A 0 PASS DP=72;GPV=1;SPV=0.020101;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:16,4:12,6 +chr9 41681322 . A G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 41850150 . C T 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:9,1:5,9 +chr9 41922394 . A T 0 PASS DP=20;GPV=1;SPV=0.00035723;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,10:2,5:0,5 +chr9 42370600 . C T 0 PASS DP=69;GPV=1;SPV=0.04187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:15,4:9,3 +chr9 42897072 . T A 0 PASS DP=63;GPV=1;SPV=0.028033;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,2:13,7 +chr9 43026155 . T A 0 PASS DP=22;GPV=1;SPV=0.011868;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,2:3,5 +chr9 43260114 . C G 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:16,3:18,2 +chr9 43303518 . T C 0 PASS DP=201;GPV=1;SPV=0.0077665;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:85,24:40,14:45,10 +chr9 43303907 . T G 0 PASS DP=79;GPV=1;SPV=0.0083637;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:13,3:18,3 +chr9 43385608 . C T 0 PASS DP=95;GPV=1;SPV=0.049878;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:19,5:18,2 +chr9 43385794 . C G 0 PASS DP=48;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:7,1:15,4 +chr9 43385818 . C T 0 PASS DP=43;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,1:14,4 +chr9 43689454 . T C 0 PASS DP=31;GPV=1;SPV=0.0030816;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:0,7:9,1 +chr9 43964692 . C A 0 PASS DP=64;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:8,2:21,6 +chr9 44013050 . T C 0 PASS DP=133;GPV=1;SPV=0.013579;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:52,9:10,8:42,1 +chr9 44060709 . T C 0 PASS DP=77;GPV=1;SPV=0.048804;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0 +chr9 44240310 . A G 0 PASS DP=80;GPV=1;SPV=0.0076953;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:17,5:12,3 +chr9 44377131 . A G 0 PASS DP=216;GPV=1;SPV=0.013537;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:74,19:41,10:33,9 +chr9 44579928 . G T 0 PASS DP=163;GPV=1;SPV=0.011122;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:62,14:55,13:7,1 +chr9 44897587 . G T 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr9 60577250 . C G 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr9 60608908 . T A 0 PASS DP=700;GPV=1;SPV=0.021051;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:320:282,38:264,37:18,1 +chr9 60608959 . G A 0 PASS DP=849;GPV=1;SPV=0.0043538;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:389:347,42:254,28:93,14 +chr9 60921369 . C A 0 PASS DP=34;GPV=1;SPV=0.0092021;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,2:2,4 +chr9 61155501 . G A 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,3:2,1 +chr9 61217953 . C T 0 PASS DP=68;GPV=1;SPV=0.019772;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:10,5:11,4 +chr9 62817309 . T G 0 PASS DP=134;GPV=1;SPV=0.032022;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:51,14:30,10:21,4 +chr9 63285253 . T C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr9 63294249 . T C 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,4:0,3 +chr9 63552393 . A C 0 PASS DP=73;GPV=1;SPV=0.0060154;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:15,8:12,1 +chr9 63607657 . G A 0 PASS DP=54;GPV=1;SPV=2.6077e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:8,4:5,7 +chr9 63756011 . A T 0 PASS DP=149;GPV=1;SPV=0.034004;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:31,6:21,7 +chr9 63757580 . A G 0 PASS DP=71;GPV=1;SPV=0.028815;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:20,4:17,3 +chr9 63770649 . T C 0 PASS DP=140;GPV=1;SPV=0.011638;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:54,15:24,7:30,8 +chr9 63777515 . C T 0 PASS DP=78;GPV=1;SPV=0.013181;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:13,4:16,1 +chr9 63880093 . TA T 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,3:15,2 +chr9 63990199 . A G 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,1:1,3 +chr9 64007863 . C T 0 PASS DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,4:10,3 +chr9 64340344 . C T 0 PASS DP=50;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,8:10,2 +chr9 64377602 . T A 0 PASS DP=44;GPV=1;SPV=0.049827;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,4:11,5 +chr9 64379465 . T C 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr9 64485419 . G A 0 PASS DP=43;GPV=1;SPV=0.027357;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,3:8,2 +chr9 64788946 . A G 0 PASS DP=193;GPV=1;SPV=0.04678;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:85,13:68,7:17,6 +chr9 64977584 . T C 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:16,3:9,1 +chr9 65286138 . A G 0 PASS DP=51;GPV=1;SPV=0.0017867;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:5,2:7,8 +chr9 65400707 . G A 0 PASS DP=60;GPV=1;SPV=4.0177e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,16:9,8:7,8 +chr9 65516350 . A T 0 PASS DP=49;GPV=1;SPV=0.059705;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr9 65517345 . ATT A 0 PASS DP=36;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:5,3:6,1 +chr9 65539927 . G A 0 PASS DP=62;GPV=1;SPV=6.8069e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,7:6,4 +chr9 65577304 . A T 0 PASS DP=56;GPV=1;SPV=0.016295;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr9 65646095 . G A 0 PASS DP=57;GPV=1;SPV=0.032025;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,1:8,3 +chr9 65654536 . G A 0 PASS DP=72;GPV=1;SPV=0.028165;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:6,3:15,6 +chr9 66042320 . G C 0 PASS DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,3:15,1 +chr9 66058307 . AC A 0 PASS DP=35;GPV=1;SPV=0.0085545;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:2,1:8,8 +chr9 66066707 . C T 0 PASS DP=29;GPV=1;SPV=0.031556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,3:4,5 +chr9 66153735 . G T 0 PASS DP=57;GPV=1;SPV=0.044429;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:9,2:14,2 +chr9 66386854 . T A 0 PASS DP=46;GPV=1;SPV=0.02969;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3 +chr9 66628778 . C T 0 PASS DP=49;GPV=1;SPV=0.020817;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:6,3:11,4 +chr9 66746618 . G A 0 PASS DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:5,1:1,2 +chr9 66803794 . T C 0 PASS DP=76;GPV=1;SPV=0.026881;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:12,4:12,6 +chr9 66833505 . A G 0 PASS DP=20;GPV=1;SPV=0.049123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr9 67168091 . C T 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr9 67363023 . G T 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr9 67388219 . TAAC T 0 PASS DP=112;GPV=1;SPV=0.020257;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:18,7:17,5 +chr9 67587707 . T C 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2 +chr9 67766314 . G A 0 PASS DP=29;GPV=1;SPV=0.076628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr9 67877848 . T C 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,2:12,6 +chr9 68336611 . T C 0 PASS DP=83;GPV=1;SPV=0.027436;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:26,9:9,1 +chr9 68648213 . C CA 0 PASS DP=29;GPV=1;SPV=0.017848;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:8,4:0,4 +chr9 69367680 . A T 0 PASS DP=47;GPV=1;SPV=0.083817;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,2:11,2 +chr9 70101358 . G GA 0 PASS DP=40;GPV=1;SPV=0.0021946;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:6,6:4,4 +chr9 70505606 . C T 0 PASS DP=44;GPV=1;SPV=0.06057;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,2:11,3 +chr9 71122950 . C T 0 PASS DP=62;GPV=1;SPV=0.0077271;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:11,5:12,1 +chr9 71282102 . A G 0 PASS DP=33;GPV=1;SPV=0.050426;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:6,4:7,1 +chr9 72378593 . C CT 0 PASS DP=52;GPV=1;SPV=0.04247;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,3:6,2 +chr9 72388243 . A G 0 PASS DP=25;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:1,3:0,1:1,2 +chr9 72841870 . C T 0 PASS DP=57;GPV=1;SPV=0.0081572;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,5:5,1 +chr9 73594095 . A G 0 PASS DP=37;GPV=1;SPV=0.026676;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,1:6,4 +chr9 74769141 . T A 0 PASS DP=51;GPV=1;SPV=0.013481;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:11,4:11,3 +chr9 75996815 . G GT 0 PASS DP=31;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,9:3,6:5,3 +chr9 76593952 . A G 0 PASS DP=50;GPV=1;SPV=0.020061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,1:8,4 +chr9 76593953 . AG A 0 PASS DP=45;GPV=1;SPV=0.049096;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,1:7,3 +chr9 77962892 . C CA 0 PASS DP=22;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,3:3,2 +chr9 78608846 . C A 0 PASS DP=64;GPV=1;SPV=0.00019835;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,6:9,4 +chr9 80885401 . C G 0 PASS DP=46;GPV=1;SPV=0.050713;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:15,3:8,3 +chr9 83144326 . G A 0 PASS DP=46;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:14,2:6,3 +chr9 83568955 . GATAC G 0 PASS DP=54;GPV=1;SPV=0.042668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,3:8,4 +chr9 85471484 . G A 0 PASS DP=40;GPV=1;SPV=0.00048402;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:5,8:7,4 +chr9 87251215 . C CA 0 PASS DP=29;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:4,3:1,2 +chr9 88063283 . A G 0 PASS DP=67;GPV=1;SPV=1.3691e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,6:8,7 +chr9 88136328 . C A 0 PASS DP=80;GPV=1;SPV=0.03057;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:13,6:23,2 +chr9 88625472 . T TCTCTCCCTCTCC 0 PASS DP=53;GPV=1;SPV=0.011726;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:14,4:4,1 +chr9 88625522 . C T 0 PASS DP=40;GPV=1;SPV=0.032477;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,2:3,4 +chr9 89182522 . AAAAATAAAATAAAATAAAAT A 0 PASS DP=37;GPV=1;SPV=0.025931;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,3:3,3 +chr9 89589617 . A AAAG 0 PASS DP=64;GPV=1;SPV=1.5201e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:9,5:6,6 +chr9 91037509 . G T 0 PASS DP=83;GPV=1;SPV=8.0594e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:15,8:13,8 +chr9 94080988 . C CT 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr9 94267862 . C CTTT 0 PASS DP=22;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:1,3:2,1 +chr9 95510348 . G C 0 PASS DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,10:7,2 +chr9 95514885 . C T 0 PASS DP=49;GPV=1;SPV=0.0072188;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:6,3:11,3 +chr9 98517892 . AGGGAGTCAGAGGACCAGTGAGAGCCTAGC A 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2 +chr9 98648114 . T TAGATAGATA 0 PASS DP=38;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:7,3:5,4 +chr9 101780957 . C T 0 PASS DP=51;GPV=1;SPV=1.587e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:4,6:4,5 +chr9 102198903 . CA C 0 PASS DP=40;GPV=1;SPV=0.058905;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:10,2:6,2 +chr9 102921881 . A AAT 0 PASS DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2 +chr9 103351270 . G T 0 PASS DP=63;GPV=1;SPV=7.0929e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:6,9:11,5 +chr9 103879939 . C CAA 0 PASS DP=36;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:5,1:4,4 +chr9 104021349 . C CTG 0 PASS DP=37;GPV=1;SPV=0.011586;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:3,3:8,2 +chr9 107603936 . T TTGTGTGTGTGTGTGTGTG 0 PASS DP=33;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,5:1,1 +chr9 108051587 . C T 0 PASS DP=64;GPV=1;SPV=2.6336e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,5:7,7 +chr9 109218126 . C CT 0 PASS DP=18;GPV=1;SPV=0.024242;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,7:0,5:0,2 +chr9 109767959 . AAAG A 0 PASS DP=47;GPV=1;SPV=0.018961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:9,5:8,3 +chr9 110206331 . A T 0 PASS DP=60;GPV=1;SPV=0.036872;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:12,2:15,3 +chr9 110286333 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr9 110342020 . CA C 0 PASS DP=30;GPV=1;SPV=0.0015792;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:3,7:2,1 +chr9 110587698 . T G 0 PASS DP=42;GPV=1;SPV=0.18479;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,8:9,2:8,6 +chr9 112051428 . T G 0 PASS DP=32;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,2:4,1:3,1 +chr9 112948023 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.012757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:10,6:0,5 +chr9 113139456 . G A 0 PASS DP=59;GPV=1;SPV=4.2046e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:11,5:5,12 +chr9 114134176 . G C 0 PASS DP=34;GPV=1;SPV=0.014275;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:6,5:4,3 +chr9 114263662 . G A 0 PASS DP=59;GPV=1;SPV=0.023347;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,2:8,2 +chr9 114536637 . ATTTTTTTTTT A 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,1:0,3 +chr9 114673471 . C CA 0 PASS DP=27;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,4:2,1 +chr9 114674602 . TTTCCTTCC T 0 PASS DP=30;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:1,2:7,2 +chr9 114676620 . C CTT 0 PASS DP=35;GPV=1;SPV=0.0020202;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:0,8:0,6:0,2 +chr9 115237473 . C T 0 PASS DP=53;GPV=1;SPV=5.8478e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,3:6,8 +chr9 116502775 . G GAAGA 0 PASS DP=22;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,6:2,5:3,1 +chr9 116768315 . CCA C 0 PASS DP=46;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:27:1,3:0,2:1,1 +chr9 116790954 . GA G 0 PASS DP=30;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,5:2,3 +chr9 117533058 . A T 0 PASS DP=56;GPV=1;SPV=0.00026967;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:8,3:8,6 +chr9 120906184 . T G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2 +chr9 121838781 . A C 0 PASS DP=53;GPV=1;SPV=0.048922;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:11,3:9,2 +chr9 125542054 . A ATC 0 PASS DP=36;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:4,1:8,6 +chr9 125712706 . AAAAATAT A 0 PASS DP=25;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:2,1:3,3 +chr9 126488366 . T A 0 PASS DP=33;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,2:2,1:5,1 +chr9 126590106 . G GTATATA 0 PASS DP=21;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,2:0,2:0,0 +chr9 126898606 . T TCACACA 0 PASS DP=40;GPV=1;SPV=0.0021645;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,5:0,2:0,3 +chr9 127188056 . CTT C 0 PASS DP=20;GPV=1;SPV=0.042986;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:0,2:3,3 +chr9 130007239 . C CAAA 0 PASS DP=30;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,4:3,1 +chr9 131045228 . A AACAAC 0 PASS DP=36;GPV=1;SPV=0.043327;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5 +chr9 131516045 . G A 0 PASS DP=22;GPV=1;SPV=0.21429;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:8,2:4,1:4,1 +chr9 132792212 . T A 0 PASS DP=45;GPV=1;SPV=1.6547e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,3:5,8 +chr9 133016718 . T G 0 PASS DP=32;GPV=1;SPV=0.042547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:4,3:9,2 +chr9 134254139 . G A 0 PASS DP=21;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,3:1,1:5,2 +chr9 134873908 . TG T 0 PASS DP=46;GPV=1;SPV=0.035714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,2:0,1:0,1 +chr9 135612181 . G A 0 PASS DP=35;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,2:5,1:2,1 +chr9 135838112 . CAG C 0 PASS DP=25;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,2:2,5 +chr9 137039700 . G A 0 PASS DP=63;GPV=1;SPV=0.024173;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,3:12,2 +chr9 137496141 . GT G 0 PASS DP=33;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,3:7,3 +chrM 1664 . G A 0 PASS DP=14766;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7327:6522,805:3321,393:3201,412 +chrX 2973355 . C CA 0 PASS DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:3,5:1,1 +chrX 3155718 . A ATC 0 PASS DP=32;GPV=1;SPV=0.2381;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,3:2,2:1,1 +chrX 3155754 . CT C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1 +chrX 8280848 . C T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,1:4,3 +chrX 13713458 . C A 0 PASS DP=17;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chrX 15427695 . C T 0 PASS DP=34;GPV=1;SPV=0.022239;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,2:7,3 +chrX 20818746 . C T 0 PASS DP=23;GPV=1;SPV=0.031621;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:3,2:2,1 +chrX 23610373 . A AGGAAGGAAGGAAAAAG 0 PASS DP=25;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:5,2:2,3 +chrX 26106457 . T C 0 PASS DP=23;GPV=1;SPV=0.15152;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,2:2,1:1,1 +chrX 26353521 . T A 0 PASS DP=26;GPV=1;SPV=5.7608e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,8:1,6:0,2 +chrX 27322232 . A G 0 PASS DP=37;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,3:8,1 +chrX 27766301 . T TAGAG 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chrX 32690279 . A C 0 PASS DP=29;GPV=1;SPV=0.0063218;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,2:4,4 +chrX 38032389 . G A 0 PASS DP=24;GPV=1;SPV=4.8074e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,11:0,4:1,7 +chrX 43673185 . G A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chrX 44810964 . T G 0 PASS DP=27;GPV=1;SPV=0.057037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2 +chrX 45068823 . T C 0 PASS DP=23;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,5:5,1:0,4 +chrX 45302126 . G T 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,2:3,2 +chrX 48643102 . G GTATAT 0 PASS DP=20;GPV=1;SPV=0.014448;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,2:0,2 +chrX 48659242 . G A 0 PASS DP=32;GPV=1;SPV=0.072581;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chrX 53786753 . C T 0 PASS DP=31;GPV=1;SPV=5.6565e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,14:0,11:1,3 +chrX 54099013 . CT C 0 PASS DP=16;GPV=1;SPV=0.0050505;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,7:0,6:1,1 +chrX 55647611 . C CTGTGTGTGTG 0 PASS DP=25;GPV=1;SPV=0.0061703;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,7:1,6:2,1 +chrX 62965197 . G T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chrX 62965210 . T A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chrX 64894658 . G GT 0 PASS DP=43;GPV=1;SPV=1.6438e-12;SS=2;SSC=117;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,25:0,10:0,15 +chrX 70800693 . T C 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chrX 74744921 . T C 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chrX 77254632 . G A 0 PASS DP=27;GPV=1;SPV=0.01049;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,7:1,6:1,1 +chrX 82026565 . C A 0 PASS DP=26;GPV=1;SPV=0.00050167;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:1,2:3,5 +chrX 82724604 . A AT 0 PASS DP=36;GPV=1;SPV=7.2702e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,11:3,9:2,2 +chrX 86997609 . T G 0 PASS DP=29;GPV=1;SPV=0.00050744;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,3:2,4 +chrX 87737067 . T G 0 PASS DP=24;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,1:2,4 +chrX 94877881 . GT G 0 PASS DP=21;GPV=1;SPV=3.4022e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,9:0,4:1,5 +chrX 99460022 . G C 0 PASS DP=20;GPV=1;SPV=5.9538e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,10:0,5:1,5 +chrX 100286017 . TA T 0 PASS DP=22;GPV=1;SPV=0.0011258;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,4:1,2 +chrX 103534879 . C A 0 PASS DP=25;GPV=1;SPV=0.0052174;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,4:3,2 +chrX 104311165 . CT C 0 PASS DP=18;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:1,5:2,1 +chrX 105204934 . T G 0 PASS DP=31;GPV=1;SPV=2.7282e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:2,20:0,7:2,13 +chrX 106315848 . G A 0 PASS DP=20;GPV=1;SPV=0.017857;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,3:0,3:0,0 +chrX 108607350 . C CA 0 PASS DP=19;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,6:0,5:0,1 +chrX 108862017 . C T 0 PASS DP=23;GPV=1;SPV=1.2237e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,9:0,2:0,7 +chrX 109511092 . T TA 0 PASS DP=23;GPV=1;SPV=3.4022e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,9:0,3:0,6 +chrX 111316086 . T TA 0 PASS DP=26;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:9,4:1,1 +chrX 116966675 . T C 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:5,3:9,2 +chrX 118885370 . C T 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,2:6,2 +chrX 125063861 . G A 0 PASS DP=28;GPV=1;SPV=3.2871e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,12:0,6:0,6 +chrX 127570537 . T C 0 PASS DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:0,1:1,1 +chrX 127876849 . T C 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,2:1,2 +chrX 128786380 . A G 0 PASS DP=38;GPV=1;SPV=0.11996;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3 +chrX 128786384 . AG A 0 PASS DP=41;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:11,1:10,3 +chrX 129574322 . T G 0 PASS DP=36;GPV=1;SPV=8.0605e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:4,14:3,7:1,7 +chrX 131132819 . C A 0 PASS DP=27;GPV=1;SPV=9.2039e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,15:0,7:1,8 +chrX 131144086 . G A 0 PASS DP=25;GPV=1;SPV=3.3652e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:15:1,14:0,6:1,8 +chrX 133295076 . C CT 0 PASS DP=25;GPV=1;SPV=0.0088413;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:1,2:3,4 +chrX 141695017 . A G 0 PASS DP=31;GPV=1;SPV=0.0067977;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,3:3,3 +chrX 142355886 . G T 0 PASS DP=35;GPV=1;SPV=0.00012759;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,3:3,5 +chrX 142569108 . T A 0 PASS DP=20;GPV=1;SPV=5.4125e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,4:0,6 +chrX 142966123 . G A 0 PASS DP=29;GPV=1;SPV=4.9975e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:1,6:3,4 +chrX 145887442 . T C 0 PASS DP=28;GPV=1;SPV=3.2174e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:0,20:0,11:0,9 +chrX 147183945 . A T 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chrX 149418257 . C T 0 PASS DP=26;GPV=1;SPV=1.8826e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,2:0,8 +chrX 151449442 . A G 0 PASS DP=22;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chrX 151718110 . GAGGA G 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,3:3,4 +chrY 6605656 . G A 0 PASS DP=33;GPV=1;SPV=3.6639e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:1,20:1,6:0,14 +chrY 8733140 . C G 0 PASS DP=30;GPV=1;SPV=3.8442e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,9:1,5:1,4 +chrY 8843676 . G T 0 PASS DP=28;GPV=1;SPV=7.6201e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:0,10:0,3:0,7 +chrY 10154028 . CT C 0 PASS DP=23;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,1:1,4 +chrY 10823428 . C T 0 PASS DP=28;GPV=1;SPV=4.6568e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,11:0,5:0,6 +chrY 11096116 . CAGAT C 0 PASS DP=43;GPV=1;SPV=0.044194;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:4,1:8,5 +chrY 11101976 . G A 0 PASS DP=75;GPV=1;SPV=0.028024;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:6,1:19,6 +chrY 11114766 . G C 0 PASS DP=211;GPV=1;SPV=0.022997;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:85,16:36,6:49,10 +chrY 11167265 . C T 0 PASS DP=197;GPV=1;SPV=0.04954;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:91,14:65,9:26,5 +chrY 11170829 . A G 0 PASS DP=35;GPV=1;SPV=0.02607;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chrY 11179197 . C T 0 PASS DP=89;GPV=1;SPV=0.0030496;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:15,8:11,1 +chrY 11200714 . T C 0 PASS DP=150;GPV=1;SPV=0.02431;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:64,13:39,7:25,6 +chrY 11218441 . T G 0 PASS DP=66;GPV=1;SPV=0.036947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,6:13,1:8,5 +chrY 11237773 . A ATTTT 0 PASS DP=194;GPV=1;SPV=0.025539;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:53,11:24,5:29,6 +chrY 11565379 . T A 0 PASS DP=378;GPV=1;SPV=0.0071414;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:152,33:71,12:81,21 +chrY 14137338 . GA G 0 PASS DP=25;GPV=1;SPV=0.00034998;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:2,5:2,4 +chrY 14935493 . C A 0 PASS DP=25;GPV=1;SPV=8.3212e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,8:1,3:0,5 +chrY 17397837 . A G 0 PASS DP=31;GPV=1;SPV=5.3237e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,15:0,6:1,9 +chrY 20279911 . A G 0 PASS DP=56;GPV=1;SPV=0.0013381;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,3:3,7 +chrY 21298142 . C T 0 PASS DP=28;GPV=1;SPV=0.074074;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chrY 24688602 . A G 0 PASS DP=27;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,2:6,2:0,0 +chrY 56714262 . G A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chrY 56721070 . G C 0 PASS DP=208;GPV=1;SPV=0.041206;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:90,11:47,4:43,7 +chrY 56860161 . A T 0 PASS DP=584;GPV=1;SPV=0.012228;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:284:245,39:142,20:103,19 +chrY 56884320 . TCAAAAAA T 0 PASS DP=165;GPV=1;SPV=0.025188;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:52,14:24,4:28,10 +chrY 56885135 . C G 0 PASS DP=324;GPV=1;SPV=0.017498;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:145,22:63,15:82,7
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/EGF089.vcf Sun Sep 13 18:40:29 2020 +0000 @@ -0,0 +1,4413 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 109575 . CGTGT C 0 PASS DP=70;GPV=1;SPV=0.035881;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,10:10,5:17,5 +chr1 109580 . G A 0 PASS DP=83;GPV=1;SPV=0.0062666;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:13,7:22,4 +chr1 136733 . G T 0 PASS DP=51;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:13,4:13,1 +chr1 183800 . C G 0 PASS DP=506;GPV=1;SPV=0.0068358;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:288:251,37:120,16:131,21 +chr1 188062 . A C 0 PASS DP=68;GPV=1;SPV=0.041617;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:21,6:5,2 +chr1 464057 . C T 0 PASS DP=47;GPV=1;SPV=0.019428;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:7,5:12,6 +chr1 608256 . G A 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr1 857687 . A G 0 PASS DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr1 1030397 . T C 0 PASS DP=35;GPV=1;SPV=0.33518;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr1 1134829 . GA G 0 PASS DP=94;GPV=1;SPV=0.016677;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:42,17:21,10:21,7 +chr1 2432621 . G A 0 PASS DP=122;GPV=1;SPV=8.6397e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:25,8:20,7 +chr1 2671789 . A T 0 PASS DP=199;GPV=1;SPV=0.044752;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:91,12:71,10:20,2 +chr1 3066327 . C T 0 PASS DP=120;GPV=1;SPV=7.263e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:47,17:26,7:21,10 +chr1 3868678 . C G 0 PASS DP=67;GPV=1;SPV=0.025178;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,7:16,2:4,5 +chr1 4644163 . A C 0 PASS DP=88;GPV=1;SPV=0.0011965;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:8,3:24,5 +chr1 6516868 . A G 0 PASS DP=41;GPV=1;SPV=0.020689;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,4:10,1 +chr1 6516870 . A G 0 PASS DP=47;GPV=1;SPV=0.027709;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,4:14,1 +chr1 7219542 . T TAA 0 PASS DP=25;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:6,3:3,1 +chr1 7310714 . C CT 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr1 8276928 . C A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr1 8366917 . A C 0 PASS DP=61;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:3,2:3,2:0,0 +chr1 8501943 . A G 0 PASS DP=46;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:7,2:4,1:3,1 +chr1 10014390 . C CT 0 PASS DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:15,3:17,4 +chr1 11718315 . C CA 0 PASS DP=39;GPV=1;SPV=0.021848;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:4,4:1,1 +chr1 11997879 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,4:7,1 +chr1 13242734 . TTACAAAGAACCTTCTTAAGGGTGGGGGAGAC T 0 PASS DP=139;GPV=1;SPV=0.0045646;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:29,4:30,3 +chr1 15904478 . G A 0 PASS DP=29;GPV=1;SPV=0.028986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:3,2:5,5 +chr1 15904479 . T A 0 PASS DP=37;GPV=1;SPV=0.030805;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:3,2:9,5 +chr1 16112755 . T C 0 PASS DP=100;GPV=1;SPV=0.00022955;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:20,8:24,6 +chr1 16512652 . C A 0 PASS DP=259;GPV=1;SPV=0.031459;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:115,19:78,16:37,3 +chr1 16516845 . T G 0 PASS DP=215;GPV=1;SPV=0.02177;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:26,7:59,12 +chr1 16535787 . G A 0 PASS DP=509;GPV=1;SPV=0.030136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:293:262,31:136,23:126,8 +chr1 16550749 . C A 0 PASS DP=207;GPV=1;SPV=0.019915;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:92,20:51,8:41,12 +chr1 16594434 . T C 0 PASS DP=474;GPV=1;SPV=0.00152;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:259:226,33:111,16:115,17 +chr1 16595518 . C T 0 PASS DP=358;GPV=1;SPV=0.049846;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:164,30:84,14:80,16 +chr1 16606649 . A G 0 PASS DP=488;GPV=1;SPV=0.01332;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:265:227,38:123,21:104,17 +chr1 16611797 . G A 0 PASS DP=458;GPV=1;SPV=0.022882;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:201,32:99,15:102,17 +chr1 16623756 . AG A 0 PASS DP=541;GPV=1;SPV=0.026576;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:272:241,31:141,22:100,9 +chr1 16626425 . G A 0 PASS DP=463;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:216,31:98,18:118,13 +chr1 16628965 . G A 0 PASS DP=423;GPV=1;SPV=0.028487;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:215,32:107,17:108,15 +chr1 16652640 . G A 0 PASS DP=172;GPV=1;SPV=0.0084969;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:71,19:40,16:31,3 +chr1 16735009 . T A 0 PASS DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0 +chr1 16874574 . C T 0 PASS DP=102;GPV=1;SPV=0.0048994;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:20,11:14,5 +chr1 17367486 . G GTCTTTTGTGTGGGAGTCGACTTTCCCAC 0 PASS DP=70;GPV=1;SPV=0.023323;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:12,6:18,3 +chr1 17658621 . C T 0 PASS DP=87;GPV=1;SPV=8.648e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:15,7:16,5 +chr1 17683340 . G C 0 PASS DP=50;GPV=1;SPV=0.0055436;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:10,9:7,1 +chr1 18286956 . C T 0 PASS DP=92;GPV=1;SPV=0.00073529;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:22,5:19,7 +chr1 18296624 . C T 0 PASS DP=93;GPV=1;SPV=0.00039485;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:19,5:16,5 +chr1 18611271 . G GAGGAAGGA 0 PASS DP=57;GPV=1;SPV=0.064666;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:21,3:4,1 +chr1 20011131 . C CA 0 PASS DP=95;GPV=1;SPV=0.042596;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:24,5:26,1 +chr1 20647466 . CTT C 0 PASS DP=35;GPV=1;SPV=0.12566;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:14,6:2,2 +chr1 23487144 . CT C 0 PASS DP=38;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:9,4:7,3 +chr1 23703868 . AATAT A 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,2:11,2 +chr1 24189141 . T TTCTC 0 PASS DP=69;GPV=1;SPV=0.040489;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:9,4:11,4 +chr1 25875571 . C T 0 PASS DP=102;GPV=1;SPV=4.2157e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:21,10:21,6 +chr1 26158356 . G A 0 PASS DP=111;GPV=1;SPV=2.4863e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,16:25,12:20,4 +chr1 26435430 . CT C 0 PASS DP=30;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,6:3,3:5,3 +chr1 26803792 . A AC 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chr1 27277036 . T C 0 PASS DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:23,3:19,2 +chr1 28303493 . CT C 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,3:12,1 +chr1 29365423 . T TCTCTCC 0 PASS DP=44;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,4:7,2:9,2 +chr1 29554795 . A ATGTGCTGTGGTGTGGCATGGTGTGTGTG 0 PASS DP=49;GPV=1;SPV=0.0054024;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:11,4:5,3 +chr1 29723904 . TACC T 0 PASS DP=34;GPV=1;SPV=0.00072598;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,10:5,5:1,5 +chr1 31154909 . T C 0 PASS DP=78;GPV=1;SPV=0.001715;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,5:16,6 +chr1 33404286 . T G 0 PASS DP=90;GPV=1;SPV=0.00013825;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:24,4:8,7 +chr1 35116835 . A ATTT 0 PASS DP=29;GPV=1;SPV=0.049774;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:2,4:4,2 +chr1 35238703 . T TAA 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr1 35705018 . AAGAAAGAGAGAGAGAGAG A 0 PASS DP=47;GPV=1;SPV=0.28542;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,6:23,4:8,2 +chr1 36449835 . CA C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr1 37414047 . CTT C 0 PASS DP=42;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,7:5,5:5,2 +chr1 37980841 . CT C 0 PASS DP=35;GPV=1;SPV=0.012681;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,9:5,4 +chr1 39138072 . C CA 0 PASS DP=42;GPV=1;SPV=0.029963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,10:9,9:6,1 +chr1 39505985 . C CAA 0 PASS DP=56;GPV=1;SPV=0.022251;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,8:15,4:4,4 +chr1 40558252 . A G 0 PASS DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,2:19,2 +chr1 40670574 . T TTATATATATATATATA 0 PASS DP=20;GPV=1;SPV=0.037926;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,2:2,3 +chr1 43875897 . CTCTTCTTCTTCTTCTTCTTCTTCT C 0 PASS DP=48;GPV=1;SPV=0.031499;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,11:6,2:13,9 +chr1 44046539 . T A 0 PASS DP=77;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:16,9:9,6:7,3 +chr1 44415506 . C T 0 PASS DP=103;GPV=1;SPV=0.0058868;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:19,6:18,4 +chr1 45520723 . CA C 0 PASS DP=60;GPV=1;SPV=0.034818;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,8:10,7:11,1 +chr1 45727494 . T C 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:0,0:29,4 +chr1 45762019 . A G 0 PASS DP=99;GPV=1;SPV=2.2816e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:21,4:11,8 +chr1 46101980 . C CTT 0 PASS DP=49;GPV=1;SPV=0.034857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,10:12,2 +chr1 46272025 . CTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,3:7,1 +chr1 47588411 . T G 0 PASS DP=89;GPV=1;SPV=0.011956;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:19,14:13,8:6,6 +chr1 47653083 . CT C 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:2,3:5,1 +chr1 48827995 . T TACAC 0 PASS DP=54;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,7:11,4:5,3 +chr1 50692241 . CTGTG C 0 PASS DP=63;GPV=1;SPV=0.011329;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,9:9,7:6,2 +chr1 54704793 . C CT 0 PASS DP=29;GPV=1;SPV=0.007971;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chr1 54780507 . G A 0 PASS DP=68;GPV=1;SPV=0.0014835;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:14,8:5,5:9,3 +chr1 56647364 . T C 0 PASS DP=108;GPV=1;SPV=2.1555e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:18,9:25,7 +chr1 57555025 . ATTTT A 0 PASS DP=38;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,3:6,3 +chr1 57735609 . GTT G 0 PASS DP=38;GPV=1;SPV=0.0095308;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:10,3:2,3 +chr1 58473549 . T A 0 PASS DP=92;GPV=1;SPV=0.011682;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:28,15:12,8:16,7 +chr1 59955307 . C CATAT 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,2:16,2 +chr1 61347165 . C CTT 0 PASS DP=46;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:4,3:9,3 +chr1 62838780 . C CA 0 PASS DP=84;GPV=1;SPV=0.0011955;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,9:21,8:11,1 +chr1 65375282 . A G 0 PASS DP=97;GPV=1;SPV=0.00037424;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:15,5:26,7 +chr1 66187579 . A G 0 PASS DP=109;GPV=1;SPV=0.045403;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,10:28,9:24,1 +chr1 67259965 . G GA 0 PASS DP=37;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:9,7:5,1 +chr1 67482066 . G GTTTTTT 0 PASS DP=34;GPV=1;SPV=0.29549;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr1 68737235 . T G 0 PASS DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:14,5:15,1 +chr1 70237513 . C T 0 PASS DP=117;GPV=1;SPV=2.9469e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:47,15:27,8:20,7 +chr1 72895693 . G GTT 0 PASS DP=69;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:5,5:3,2:2,3 +chr1 73747985 . T C 0 PASS DP=76;GPV=1;SPV=0.0079864;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:9,7:2,3:7,4 +chr1 74224724 . T C 0 PASS DP=85;GPV=1;SPV=0.0013656;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:18,5:20,6 +chr1 74722610 . G A 0 PASS DP=79;GPV=1;SPV=0.039635;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:17,5:14,3 +chr1 75886415 . G A 0 PASS DP=56;GPV=1;SPV=0.0088091;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,4:8,1 +chr1 75886416 . G A 0 PASS DP=62;GPV=1;SPV=0.0082105;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,4:8,1 +chr1 77367763 . A ATGTAAT 0 PASS DP=19;GPV=1;SPV=0.27273;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:0,1:4,1 +chr1 77475382 . ATATATG A 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,3:6,1 +chr1 78838429 . ATTTTTTTTTTTTT A 0 PASS DP=62;GPV=1;SPV=0.030781;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,9:11,5:10,4 +chr1 78840128 . T G 0 PASS DP=96;GPV=1;SPV=0.0015624;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:49,14:25,5:24,9 +chr1 79559217 . C T 0 PASS DP=79;GPV=1;SPV=0.0022144;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:14,1:21,9 +chr1 80455065 . GTTTT G 0 PASS DP=44;GPV=1;SPV=0.084679;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,5:15,4:4,1 +chr1 84245172 . CT C 0 PASS DP=38;GPV=1;SPV=0.011783;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:6,4:3,1 +chr1 85409396 . C T 0 PASS DP=104;GPV=1;SPV=4.1341e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:24,9:19,7 +chr1 85914304 . A ATG 0 PASS DP=49;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,10:3,7:5,3 +chr1 88623526 . A T 0 PASS DP=66;GPV=1;SPV=0.12121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:3,3:3,1:0,2 +chr1 90311030 . T TTTCCTTCCTTCC 0 PASS DP=74;GPV=1;SPV=0.0042046;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,9:11,5:20,4 +chr1 90499440 . A G 0 PASS DP=93;GPV=1;SPV=0.010217;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:20,5:26,3 +chr1 92412374 . C CTTT 0 PASS DP=56;GPV=1;SPV=0.19282;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,4:12,1:15,3 +chr1 93053223 . T G 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:4,2:15,2 +chr1 93126159 . T G 0 PASS DP=71;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:1,2:0,1:1,1 +chr1 94591266 . A C 0 PASS DP=67;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,4:16,3:10,1 +chr1 94881184 . C G 0 PASS DP=110;GPV=1;SPV=0.00080381;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:49,11:27,4:22,7 +chr1 97529514 . T C 0 PASS DP=95;GPV=1;SPV=1.9106e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:38,18:18,9:20,9 +chr1 99708626 . ATAT A 0 PASS DP=22;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:2,3:1,1 +chr1 100028321 . GTT G 0 PASS DP=88;GPV=1;SPV=0.022644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:28,2:14,4 +chr1 101750012 . T G 0 PASS DP=86;GPV=1;SPV=1.1832e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:18,8:14,10 +chr1 102118219 . GCAA G 0 PASS DP=101;GPV=1;SPV=0.013188;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:37,6:18,3 +chr1 103195970 . CTT C 0 PASS DP=43;GPV=1;SPV=0.02905;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:4,1:15,5 +chr1 103196013 . TTC T 0 PASS DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,1:9,7 +chr1 103320217 . A G 0 PASS DP=83;GPV=1;SPV=0.015638;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:14,2:17,5 +chr1 105071539 . A ACTCTCTCTCTCTCTCT 0 PASS DP=50;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,6:6,5:8,1 +chr1 105075289 . T TATAC 0 PASS DP=48;GPV=1;SPV=0.018761;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:15,2:5,4 +chr1 105176574 . C G 0 PASS DP=104;GPV=1;SPV=7.3001e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:17,6:25,8 +chr1 106711994 . T TGA 0 PASS DP=67;GPV=1;SPV=0.056165;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,5:13,2:20,3 +chr1 108227490 . A C 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr1 108241901 . C G 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,0:17,4 +chr1 108489196 . G GT 0 PASS DP=81;GPV=1;SPV=0.027875;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,2:16,2 +chr1 108489197 . C G 0 PASS DP=75;GPV=1;SPV=0.033417;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,5:15,3:18,2 +chr1 108523875 . TATATATATG T 0 PASS DP=59;GPV=1;SPV=0.12939;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,4:16,2:13,2 +chr1 109469827 . CA C 0 PASS DP=38;GPV=1;SPV=0.0065559;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:8,6:1,1 +chr1 113423259 . T TG 0 PASS DP=37;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:10,9:0,1 +chr1 114024625 . CT C 0 PASS DP=27;GPV=1;SPV=0.015866;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:5,8:2,2 +chr1 114784814 . C CTTTTTTTT 0 PASS DP=64;GPV=1;SPV=0.046785;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,8:8,1 +chr1 116830698 . T TTCTC 0 PASS DP=34;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,9:2,8:6,1 +chr1 117137454 . C A 0 PASS DP=85;GPV=1;SPV=0.022846;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:21,2:15,3 +chr1 118312815 . GC G 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,3:5,3 +chr1 120061685 . T G 0 PASS DP=59;GPV=1;SPV=0.039481;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:7,10:22,2 +chr1 120118304 . T C 0 PASS DP=114;GPV=1;SPV=0.0081296;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:30,11:15,2 +chr1 120120057 . T G 0 PASS DP=98;GPV=1;SPV=0.024659;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:26,6:26,1 +chr1 120122567 . T C 0 PASS DP=109;GPV=1;SPV=0.036338;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:56,13:27,10:29,3 +chr1 120124322 . G C 0 PASS DP=116;GPV=1;SPV=0.012563;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:52,12:26,8:26,4 +chr1 120147514 . CT C 0 PASS DP=119;GPV=1;SPV=0.042357;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:29,2:28,11 +chr1 120199379 . C CCTCT 0 PASS DP=105;GPV=1;SPV=0.0027718;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:30,18:13,6:17,12 +chr1 120511371 . G A 0 PASS DP=141;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:75,21:30,9:45,12 +chr1 120865334 . T C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr1 120920945 . A G 0 PASS DP=71;GPV=1;SPV=0.083411;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:24,4:15,1 +chr1 121006911 . C G 0 PASS DP=128;GPV=1;SPV=0.014857;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:60,20:21,17:39,3 +chr1 121017426 . A G 0 PASS DP=108;GPV=1;SPV=0.0489;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:50,12:29,10:21,2 +chr1 121035524 . C G 0 PASS DP=112;GPV=1;SPV=0.0051375;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:58,10:32,5:26,5 +chr1 121070056 . C T 0 PASS DP=58;GPV=1;SPV=0.096448;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chr1 121123014 . T C 0 PASS DP=60;GPV=1;SPV=0.028548;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:15,7:9,4 +chr1 121123034 . G C 0 PASS DP=78;GPV=1;SPV=0.0030354;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:18,9:11,5 +chr1 121295036 . G A 0 PASS DP=49;GPV=1;SPV=0.14592;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:21,3:8,2 +chr1 121312943 . G T 0 PASS DP=81;GPV=1;SPV=0.025682;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:21,3:14,2 +chr1 121375318 . C CT 0 PASS DP=43;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,7:6,4:6,3 +chr1 121398942 . G A 0 PASS DP=105;GPV=1;SPV=0.0053111;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:12,10:27,6 +chr1 121655844 . C A 0 PASS DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr1 121662952 . C T 0 PASS DP=112;GPV=1;SPV=0.02099;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:18,2:28,5 +chr1 121769292 . T C 0 PASS DP=136;GPV=1;SPV=0.0098206;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:29,7:45,2 +chr1 121918780 . T A 0 PASS DP=50;GPV=1;SPV=0.031046;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:19,1:2,4 +chr1 121938737 . C T 0 PASS DP=88;GPV=1;SPV=0.039155;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:18,4:24,1 +chr1 121951935 . G C 0 PASS DP=54;GPV=1;SPV=0.045061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:17,2:8,3 +chr1 121952283 . G T 0 PASS DP=64;GPV=1;SPV=0.010627;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:15,7:10,7 +chr1 122122886 . C T 0 PASS DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,3:1,1 +chr1 122164394 . T C 0 PASS DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:24,4:20,2 +chr1 122164557 . A T 0 PASS DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:3,1:12,6 +chr1 122290901 . C A 0 PASS DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:27,1:4,3 +chr1 123692217 . G C 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:36,4:0,0 +chr1 123845299 . C A 0 PASS DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:6,1:19,3 +chr1 124786953 . G C 0 PASS DP=70;GPV=1;SPV=0.031149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:22,3:9,2 +chr1 124788615 . T C 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1 +chr1 124804266 . T A 0 PASS DP=156;GPV=1;SPV=0.010263;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:64,12:45,9:19,3 +chr1 124819244 . A T 0 PASS DP=64;GPV=1;SPV=0.036822;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:17,3:15,3 +chr1 124832181 . T G 0 PASS DP=39;GPV=1;SPV=0.0079695;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,6:4,2 +chr1 124833991 . A G 0 PASS DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:19,3:12,2 +chr1 124866881 . T A 0 PASS DP=237;GPV=1;SPV=0.023164;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:114,17:76,11:38,6 +chr1 125135958 . C G 0 PASS DP=211;GPV=1;SPV=0.00014152;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:86,29:34,5:52,24 +chr1 125135961 . A T 0 PASS DP=220;GPV=1;SPV=0.00031663;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:93,28:34,5:59,23 +chr1 125170319 . T G 0 PASS DP=64;GPV=1;SPV=0.082408;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:1,3:30,1 +chr1 125178301 . A C 0 PASS DP=13569;GPV=1;SPV=9.8163e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6911:6057,728:633,39:5424,689 +chr1 125182272 . G A 0 PASS DP=12697;GPV=1;SPV=0.0060736;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:6772:6000,739:5014,473:986,266 +chr1 143185845 . C T 0 PASS DP=548;GPV=1;SPV=0.00057945;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:359:289,68:177,52:112,16 +chr1 143187209 . A C 0 PASS DP=1386;GPV=1;SPV=0.0018903;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:813:721,90:227,40:494,50 +chr1 143194773 . A T 0 PASS DP=154;GPV=1;SPV=0.031672;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:31,3:46,11 +chr1 143201663 . G A 0 PASS DP=638;GPV=1;SPV=0.01979;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:396:346,47:107,19:239,28 +chr1 143210881 . C T 0 PASS DP=1180;GPV=1;SPV=0.0011506;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:732:648,79:617,41:31,38 +chr1 143214275 . A G 0 PASS DP=8966;GPV=1;SPV=0.0034751;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:5453:4819,619:4117,404:702,215 +chr1 143214277 . C G 0 PASS DP=9389;GPV=1;SPV=0.0017894;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:5732:5012,625:4106,424:906,201 +chr1 143237848 . T A 0 PASS DP=3596;GPV=1;SPV=0.036833;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2154:1930,219:1400,145:530,74 +chr1 143245469 . A G 0 PASS DP=1075;GPV=1;SPV=0.022884;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:641:554,79:532,74:22,5 +chr1 143324676 . G A 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr1 143505908 . C T 0 PASS DP=41;GPV=1;SPV=0.3167;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:22,4:6,1 +chr1 143743001 . ATGTG A 0 PASS DP=80;GPV=1;SPV=0.014985;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,12:21,9:11,3 +chr1 143769128 . T C 0 PASS DP=133;GPV=1;SPV=0.025318;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:75,18:44,9:31,9 +chr1 143791240 . C A 0 PASS DP=36;GPV=1;SPV=0.21414;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:17,4:5,1 +chr1 143816122 . C A 0 PASS DP=55;GPV=1;SPV=1.1349e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,22:5,10:8,12 +chr1 143876753 . C CTA 0 PASS DP=65;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,8:19,5:7,3 +chr1 143908474 . G T 0 PASS DP=160;GPV=1;SPV=0.041053;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:97,18:45,2:52,16 +chr1 144103951 . G A 0 PASS DP=160;GPV=1;SPV=0.037815;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:86,16:46,13:40,3 +chr1 144484369 . C CA 0 PASS DP=82;GPV=1;SPV=0.048523;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,7:32,6:14,1 +chr1 144592574 . A G 0 PASS DP=53;GPV=1;SPV=0.058582;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,5:12,1 +chr1 144592578 . G GA 0 PASS DP=41;GPV=1;SPV=0.086254;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,7:14,6:6,1 +chr1 144827138 . A G 0 PASS DP=119;GPV=1;SPV=0.041942;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:73,15:27,2:46,13 +chr1 144827697 . A AATG 0 PASS DP=44;GPV=1;SPV=0.053126;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:4,1:19,6 +chr1 144827768 . TTAAA T 0 PASS DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:2,1:34,3 +chr1 144988999 . CT C 0 PASS DP=37;GPV=1;SPV=0.03274;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:5,8:9,4 +chr1 145136580 . A G 0 PASS DP=131;GPV=1;SPV=0.019561;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:37,10:26,2 +chr1 145162688 . A G 0 PASS DP=52;GPV=1;SPV=0.02761;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:16,5:7,6 +chr1 145411387 . C CT 0 PASS DP=47;GPV=1;SPV=0.010716;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,17:6,11:11,6 +chr1 145445127 . C CT 0 PASS DP=57;GPV=1;SPV=0.035929;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:10,9:13,3 +chr1 146333614 . A G 0 PASS DP=51;GPV=1;SPV=0.0097372;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,6:9,6 +chr1 146397990 . G C 0 PASS DP=77;GPV=1;SPV=2.7941e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:13,8:16,10 +chr1 146443480 . C T 0 PASS DP=56;GPV=1;SPV=0.0037023;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:8,1:15,8 +chr1 146717129 . CTTTTT C 0 PASS DP=32;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,6:4,1 +chr1 147090778 . C CTTTTTTT 0 PASS DP=58;GPV=1;SPV=0.18565;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:26,2:11,3 +chr1 148239596 . CT C 0 PASS DP=94;GPV=1;SPV=0.023047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,18:28,12:20,6 +chr1 148471265 . T TACACAC 0 PASS DP=69;GPV=1;SPV=0.045222;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,11:18,5:15,6 +chr1 148474192 . GTT G 0 PASS DP=36;GPV=1;SPV=0.37843;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:19,3:4,1 +chr1 149058110 . C T 0 PASS DP=56;GPV=1;SPV=0.021975;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,5:11,3 +chr1 149157370 . T C 0 PASS DP=150;GPV=1;SPV=0.02174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:73,18:49,5:24,13 +chr1 149176407 . G C 0 PASS DP=64;GPV=1;SPV=0.029779;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:17,7:11,7 +chr1 149398307 . T G 0 PASS DP=80;GPV=1;SPV=0.00019831;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:26,34:12,13:14,21 +chr1 149424393 . T G 0 PASS DP=68;GPV=1;SPV=0.0010994;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:11,5:12,12 +chr1 149475128 . G A 0 PASS DP=55;GPV=1;SPV=0.017006;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5 +chr1 149528005 . T C 0 PASS DP=38;GPV=1;SPV=0.023166;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,1:5,4 +chr1 149569833 . C T 0 PASS DP=174;GPV=1;SPV=0.040363;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:38,12:48,6 +chr1 149583520 . A C 0 PASS DP=65;GPV=1;SPV=0.15137;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,4:27,1:7,3 +chr1 149602017 . G A 0 PASS DP=64;GPV=1;SPV=0.016573;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:18,1:12,6 +chr1 149609586 . T C 0 PASS DP=61;GPV=1;SPV=0.0040088;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:18,9:10,2 +chr1 149634139 . GCCCCCACCGA G 0 PASS DP=69;GPV=1;SPV=0.024131;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,6:15,4 +chr1 149644757 . AC A 0 PASS DP=76;GPV=1;SPV=0.016341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,6:15,4:10,2 +chr1 149685676 . C T 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,4:10,1 +chr1 149771820 . G A 0 PASS DP=47;GPV=1;SPV=0.13128;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,2:14,3 +chr1 149789393 . A AAATAATAATAATAATAAT 0 PASS DP=114;GPV=1;SPV=0.00012454;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:53,17:26,13:27,4 +chr1 150020956 . C T 0 PASS DP=117;GPV=1;SPV=1.3844e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:52,21:24,11:28,10 +chr1 150724165 . C CTT 0 PASS DP=44;GPV=1;SPV=0.045954;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,10:8,8:9,2 +chr1 150775822 . ATTT A 0 PASS DP=44;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,6:13,3:4,3 +chr1 151999734 . G A 0 PASS DP=127;GPV=1;SPV=0.00016247;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:67,22:30,10:37,12 +chr1 153558554 . G T 0 PASS DP=127;GPV=1;SPV=0.018547;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:44,6:30,3 +chr1 154113157 . TA T 0 PASS DP=117;GPV=1;SPV=0.02492;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:70,9:29,3:41,6 +chr1 154593135 . C CAAA 0 PASS DP=59;GPV=1;SPV=0.040919;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,16:12,14:7,2 +chr1 154714319 . G GGTGTGTGTGGGGT 0 PASS DP=93;GPV=1;SPV=0.074687;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:52,6:22,4:30,2 +chr1 155065700 . CTTTATTTATTTA C 0 PASS DP=94;GPV=1;SPV=0.0036289;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:15,5:24,10 +chr1 155584670 . C CA 0 PASS DP=51;GPV=1;SPV=0.20137;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:27,3:3,1 +chr1 156617351 . C CTT 0 PASS DP=64;GPV=1;SPV=0.010745;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,16:15,13:7,3 +chr1 156756793 . C CT 0 PASS DP=55;GPV=1;SPV=0.052073;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,6:19,5:9,1 +chr1 156787448 . TTG T 0 PASS DP=55;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:8,8:6,7:2,1 +chr1 156979361 . C CTT 0 PASS DP=59;GPV=1;SPV=0.010186;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,14:16,12:13,2 +chr1 157035934 . T G 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,3:15,1 +chr1 157274173 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:5,2:7,2 +chr1 158084688 . T C 0 PASS DP=122;GPV=1;SPV=0.0029786;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:63,11:25,3:38,8 +chr1 160569542 . G A 0 PASS DP=118;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:25,5:8,3:17,2 +chr1 160973841 . C CTT 0 PASS DP=30;GPV=1;SPV=0.1532;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:6,5:7,1 +chr1 161097738 . G C 0 PASS DP=66;GPV=1;SPV=0.012533;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:16,9:6,7:10,2 +chr1 161443332 . G A 0 PASS DP=151;GPV=1;SPV=0.011182;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:88,10:30,2:58,8 +chr1 161513933 . G A 0 PASS DP=148;GPV=1;SPV=0.024873;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:81,15:43,4:38,11 +chr1 161629853 . T C 0 PASS DP=50;GPV=1;SPV=0.32052;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:32,2:2,2 +chr1 161981444 . C A 0 PASS DP=139;GPV=1;SPV=0.0009232;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:73,14:23,2:50,12 +chr1 162403503 . AAAAAAAAAATATATATATATAT A 0 PASS DP=57;GPV=1;SPV=0.20823;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:16,1:19,3 +chr1 164776899 . TTGTGTG T 0 PASS DP=54;GPV=1;SPV=0.01792;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,13:16,9:7,4 +chr1 164793872 . C CT 0 PASS DP=31;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,4:10,1 +chr1 165117026 . C T 0 PASS DP=126;GPV=1;SPV=1.6016e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:58,22:30,13:28,9 +chr1 165591334 . C CT 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,1:14,3 +chr1 165695487 . CT C 0 PASS DP=32;GPV=1;SPV=0.0083313;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,7:5,2 +chr1 167111513 . TACAC T 0 PASS DP=43;GPV=1;SPV=0.24176;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,4:2,1:5,3 +chr1 168153906 . CAA C 0 PASS DP=54;GPV=1;SPV=0.0093016;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,15:12,12:9,3 +chr1 168466949 . C T 0 PASS DP=133;GPV=1;SPV=0.003938;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:76,13:43,9:33,4 +chr1 169997884 . A G 0 PASS DP=68;GPV=1;SPV=0.031247;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,12:13,10:9,2 +chr1 170166140 . C CT 0 PASS DP=67;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:5,6:1,2:4,4 +chr1 170331019 . A AT 0 PASS DP=116;GPV=1;SPV=0.0030735;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:65,14:33,4:32,10 +chr1 171694664 . G GAA 0 PASS DP=78;GPV=1;SPV=0.11157;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,5:19,3:18,2 +chr1 174795790 . G T 0 PASS DP=142;GPV=1;SPV=0.00059571;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:81,20:46,13:35,7 +chr1 174973979 . GTTTTT G 0 PASS DP=43;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,5:16,4:4,1 +chr1 175085874 . C CAA 0 PASS DP=81;GPV=1;SPV=0.013604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:33,20:26,17:7,3 +chr1 175122455 . TTGCTAACAAAGGACTGAAGAAGAGCCAGTGAGTTAGGAAAATCAAGGGAGTA T 0 PASS DP=75;GPV=1;SPV=0.022351;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:19,10:20,6 +chr1 179410300 . G A 0 PASS DP=129;GPV=1;SPV=5.0817e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:52,24:30,16:22,8 +chr1 181727163 . G A 0 PASS DP=131;GPV=1;SPV=2.1332e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:56,36:31,18:25,18 +chr1 182141378 . CTTTCTTTTT C 0 PASS DP=27;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:7,2:7,2 +chr1 183364655 . A ATTTCTTTCTTTCTTTCTTTC 0 PASS DP=85;GPV=1;SPV=0.0089603;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,15:17,2:19,13 +chr1 183441072 . G A 0 PASS DP=126;GPV=1;SPV=0.0010762;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:64,13:37,5:27,8 +chr1 184811511 . T TGTTTTTTTTTG 0 PASS DP=75;GPV=1;SPV=0.054778;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,9:14,7:31,2 +chr1 185858586 . ATTTTTTTTTT A 0 PASS DP=45;GPV=1;SPV=0.2649;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:14,2:14,2 +chr1 186163946 . A T 0 PASS DP=137;GPV=1;SPV=0.01109;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:79,10:37,7:42,3 +chr1 189139638 . C A 0 PASS DP=151;GPV=1;SPV=0.0037905;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:69,8:43,3:26,5 +chr1 190277113 . A ATATATATATATATATATT 0 PASS DP=19;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,5:1,1:3,4 +chr1 190280208 . A C 0 PASS DP=115;GPV=1;SPV=0.00043432;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:55,14:31,6:24,8 +chr1 190408019 . C CT 0 PASS DP=37;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,10:6,9:3,1 +chr1 191089426 . TATATATTTGTGTGTATACATGTGTATGTATACGCAC T 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:16,2:19,2 +chr1 191581492 . G GTTTT 0 PASS DP=41;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,9:7,7:8,2 +chr1 191806131 . GAAT G 0 PASS DP=97;GPV=1;SPV=0.12939;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:29,4:11,3:18,1 +chr1 192048740 . G A 0 PASS DP=62;GPV=1;SPV=0.01311;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,8:26,6:3,2 +chr1 192550559 . G A 0 PASS DP=134;GPV=1;SPV=9.5454e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:68,20:30,4:38,16 +chr1 192606029 . A AAGAG 0 PASS DP=64;GPV=1;SPV=0.14384;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:29,2:7,2 +chr1 193177358 . C CAAAA 0 PASS DP=66;GPV=1;SPV=0.01273;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,16:24,15:3,1 +chr1 193564348 . TTATA T 0 PASS DP=139;GPV=1;SPV=0.024837;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:71,13:36,8:35,5 +chr1 193988983 . A T 0 PASS DP=127;GPV=1;SPV=0.0017076;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:69,14:39,6:30,8 +chr1 194673631 . G GTTTT 0 PASS DP=54;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,11:11,8:7,3 +chr1 194834203 . T A 0 PASS DP=125;GPV=1;SPV=0.01342;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:25,8:11,3:14,5 +chr1 195543282 . GGTGT G 0 PASS DP=59;GPV=1;SPV=0.10026;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:26,4:7,1 +chr1 196235161 . T C 0 PASS DP=110;GPV=1;SPV=0.0015681;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:62,19:29,8:33,11 +chr1 198404753 . A C 0 PASS DP=129;GPV=1;SPV=3.3498e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:60,30:30,14:30,16 +chr1 198977744 . T A 0 PASS DP=70;GPV=1;SPV=0.28876;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,4:12,2:13,2 +chr1 199200439 . C CT 0 PASS DP=65;GPV=1;SPV=0.00036531;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:14,11:9,9 +chr1 200073268 . T TTATA 0 PASS DP=36;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,9:5,5:5,4 +chr1 200736164 . CTTTTT C 0 PASS DP=34;GPV=1;SPV=0.26519;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,3:11,1:5,2 +chr1 200919962 . C CT 0 PASS DP=118;GPV=1;SPV=0.15872;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:33,5:13,2:20,3 +chr1 201765404 . C T 0 PASS DP=66;GPV=1;SPV=0.023939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:5,5:28,2 +chr1 201901513 . T A 0 PASS DP=31;GPV=1;SPV=0.0011846;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:5,17:1,12:4,5 +chr1 202065074 . C CA 0 PASS DP=55;GPV=1;SPV=0.043306;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,13:13,11:11,2 +chr1 202721205 . C CTTT 0 PASS DP=48;GPV=1;SPV=0.040398;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:12,10:6,9:6,1 +chr1 203315362 . G T 0 PASS DP=99;GPV=1;SPV=1.021e-10;SS=2;SSC=99;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:25,32:23,23:2,9 +chr1 203315363 . G T 0 PASS DP=101;GPV=1;SPV=2.3122e-10;SS=2;SSC=96;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:27,32:23,23:4,9 +chr1 203918573 . A T 0 PASS DP=92;GPV=1;SPV=0.023333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:23,6:9,1:14,5 +chr1 204099424 . C CT 0 PASS DP=44;GPV=1;SPV=0.011427;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,9:13,8:4,1 +chr1 205314328 . T G 0 PASS DP=151;GPV=1;SPV=4.0037e-17;SS=2;SSC=163;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:36,56:17,18:19,38 +chr1 205898579 . T TTGTGTGTGTG 0 PASS DP=31;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3 +chr1 205956552 . C A 0 PASS DP=151;GPV=1;SPV=0.0001101;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:78,19:38,10:40,9 +chr1 206118843 . T C 0 PASS DP=39;GPV=1;SPV=0.066379;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,8:9,4:9,4 +chr1 206322898 . T C 0 PASS DP=44;GPV=1;SPV=0.053126;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:6,2:17,5 +chr1 206345228 . G T 0 PASS DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:4,4:9,5 +chr1 207118198 . A G 0 PASS DP=104;GPV=1;SPV=0.018568;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:27,3:30,11 +chr1 211214809 . T A 0 PASS DP=79;GPV=1;SPV=0.050308;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:20,4:23,2 +chr1 211440639 . CA C 0 PASS DP=79;GPV=1;SPV=0.00017113;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:30,27:15,17:15,10 +chr1 211535137 . C T 0 PASS DP=89;GPV=1;SPV=0.0024246;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:26,16:10,3:16,13 +chr1 212116319 . C CA 0 PASS DP=53;GPV=1;SPV=0.0043177;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,10:11,8:10,2 +chr1 212806847 . C T 0 PASS DP=73;GPV=1;SPV=0.018872;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:14,9:22,4 +chr1 212865485 . A ATTTTTTTTTT 0 PASS DP=52;GPV=1;SPV=0.011608;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,8:15,7:2,1 +chr1 212896856 . A T 0 PASS DP=44;GPV=1;SPV=0.018479;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:6,17:4,9:2,8 +chr1 213355745 . C T 0 PASS DP=120;GPV=1;SPV=0.0061895;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:64,10:44,7:20,3 +chr1 213714274 . T A 0 PASS DP=125;GPV=1;SPV=0.012157;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:61,7:35,3:26,4 +chr1 213728937 . G GTT 0 PASS DP=36;GPV=1;SPV=0.012914;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,11:9,7:2,4 +chr1 215732544 . CTTTTT C 0 PASS DP=31;GPV=1;SPV=0.0048547;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:4,8:3,4 +chr1 216880304 . CA C 0 PASS DP=46;GPV=1;SPV=0.019316;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,9:6,1 +chr1 216912226 . G A 0 PASS DP=30;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:7,2:0,0 +chr1 217958962 . C T 0 PASS DP=148;GPV=1;SPV=7.2352e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:81,27:41,12:40,15 +chr1 218230928 . CTTTT C 0 PASS DP=37;GPV=1;SPV=0.012102;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:9,5:2,2 +chr1 218991845 . G A 0 PASS DP=140;GPV=1;SPV=1.7265e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:65,29:24,12:41,17 +chr1 219165731 . C A 0 PASS DP=77;GPV=1;SPV=0.0038232;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:15,14:8,5:7,9 +chr1 219927678 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:6,3:3,5 +chr1 221297986 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:5,6:4,3 +chr1 221524306 . A G 0 PASS DP=31;GPV=1;SPV=0.088235;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,4:4,3:2,1 +chr1 223065455 . CTTT C 0 PASS DP=35;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:8,3:11,4 +chr1 223268044 . C T 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,3:10,3 +chr1 223656676 . G T 0 PASS DP=61;GPV=1;SPV=0.016951;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:14,5:5,2 +chr1 224011834 . GGACAT G 0 PASS DP=58;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,4:16,2:7,2 +chr1 224342475 . ATCTC A 0 PASS DP=65;GPV=1;SPV=0.018933;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,11:9,7:10,4 +chr1 226844839 . TAAAA T 0 PASS DP=33;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr1 228817691 . A T 0 PASS DP=111;GPV=1;SPV=0.00021864;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:29,9:19,4 +chr1 229069432 . T TA 0 PASS DP=95;GPV=1;SPV=0.017657;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:12,2:20,9 +chr1 229116825 . G A 0 PASS DP=43;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,5:3,3:9,2 +chr1 229550525 . C CA 0 PASS DP=52;GPV=1;SPV=0.0052123;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:15,9:3,3 +chr1 229870926 . A ACACAC 0 PASS DP=24;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:4,1:1,1 +chr1 231169368 . C CT 0 PASS DP=32;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:8,4:5,1 +chr1 232368199 . CAA C 0 PASS DP=44;GPV=1;SPV=0.15645;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,2:15,3 +chr1 233120164 . C CA 0 PASS DP=51;GPV=1;SPV=0.030612;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,7:20,6:4,1 +chr1 233729406 . TGGC T 0 PASS DP=49;GPV=1;SPV=0.01817;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,2:13,5 +chr1 234108657 . TTA T 0 PASS DP=63;GPV=1;SPV=0.069262;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:22,3:15,4 +chr1 235080879 . G GA 0 PASS DP=48;GPV=1;SPV=0.0047012;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,11:9,9:3,2 +chr1 235926950 . CAA C 0 PASS DP=44;GPV=1;SPV=0.032608;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:14,9:3,1 +chr1 237594886 . GTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=38;GPV=1;SPV=0.024462;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:5,2:5,2 +chr1 237827936 . CA C 0 PASS DP=35;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:11,5:9,1 +chr1 237884033 . A C 0 PASS DP=56;GPV=1;SPV=0.0024202;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,15:6,6:9,9 +chr1 240248861 . T A 0 PASS DP=100;GPV=1;SPV=0.00027224;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:47,16:29,3:18,13 +chr1 240277525 . CTT C 0 PASS DP=29;GPV=1;SPV=0.048872;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:5,4:3,1 +chr1 240364499 . C T 0 PASS DP=99;GPV=1;SPV=0.00013601;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:26,8:14,5 +chr1 241571864 . C CT 0 PASS DP=47;GPV=1;SPV=0.028117;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:7,8:12,2 +chr1 242512288 . C T 0 PASS DP=85;GPV=1;SPV=0.0010162;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:17,3:13,5 +chr1 243079412 . G A 0 PASS DP=97;GPV=1;SPV=0.00081679;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:24,6:16,4 +chr1 245006970 . A C 0 PASS DP=82;GPV=1;SPV=0.034441;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,4:9,1:12,3 +chr1 245781338 . C T 0 PASS DP=95;GPV=1;SPV=0.00022306;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:25,4:11,7 +chr1 246267930 . G A 0 PASS DP=111;GPV=1;SPV=3.0204e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:50,20:33,9:17,11 +chr1 246273153 . C T 0 PASS DP=37;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,3:12,1 +chr1 246408663 . CT C 0 PASS DP=23;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:4,4:2,2 +chr1 247852884 . GACACACACAC G 0 PASS DP=67;GPV=1;SPV=0.018096;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:20,4:14,4 +chr1 247958619 . G A 0 PASS DP=104;GPV=1;SPV=0.00015449;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:17,9:26,4 +chr1 248475596 . TTAAA T 0 PASS DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr1 248938433 . T C 0 PASS DP=127;GPV=1;SPV=0.022333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,7:21,3:32,4 +chr1 248945547 . GGAGGGT G 0 PASS DP=140;GPV=1;SPV=0.028385;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:65,10:25,3:40,7 +chr1 248945740 . TA T 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,1:1,3 +chr10 51939 . T A 0 PASS DP=103;GPV=1;SPV=0.0093264;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:51,8:24,6:27,2 +chr10 260402 . C CAA 0 PASS DP=28;GPV=1;SPV=0.013043;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,3:2,3 +chr10 685159 . AAAATATATATATATATATATATATATACATAT A 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:4,1:10,6 +chr10 794158 . C G 0 PASS DP=64;GPV=1;SPV=0.022194;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:15,8:6,2 +chr10 1542823 . G T 0 PASS DP=38;GPV=1;SPV=0.031109;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:12,3:1,4 +chr10 2205050 . CA C 0 PASS DP=93;GPV=1;SPV=3.8981e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,16:15,9:22,7 +chr10 2583951 . C T 0 PASS DP=74;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:18,2:14,3 +chr10 4117550 . A G 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,3:1,2 +chr10 4169431 . C CA 0 PASS DP=53;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:15,8:4,2 +chr10 4929666 . T C 0 PASS DP=96;GPV=1;SPV=0.008578;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:21,7:21,3 +chr10 5370687 . A ATG 0 PASS DP=37;GPV=1;SPV=0.0046642;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,8:6,5:0,3 +chr10 8613475 . CTT C 0 PASS DP=37;GPV=1;SPV=0.025795;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,8:7,6:6,2 +chr10 9058088 . C CTTTT 0 PASS DP=39;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,5:6,4:3,1 +chr10 9133448 . T TTGTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=74;GPV=1;SPV=0.048301;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:15,8:15,3 +chr10 9321021 . C CTT 0 PASS DP=55;GPV=1;SPV=0.1519;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:11,2:21,3 +chr10 9776111 . C CAA 0 PASS DP=45;GPV=1;SPV=0.040415;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,8:16,7:4,1 +chr10 10127847 . G T 0 PASS DP=83;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:20,4:14,2:6,2 +chr10 10383234 . A G 0 PASS DP=91;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:23,5:11,3:12,2 +chr10 10621243 . CA C 0 PASS DP=46;GPV=1;SPV=0.0087248;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,10:8,8:5,2 +chr10 10652124 . G A 0 PASS DP=55;GPV=1;SPV=0.004796;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:8,3:13,10 +chr10 11197070 . G A 0 PASS DP=28;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,2:5,1:0,1 +chr10 11645046 . C CA 0 PASS DP=60;GPV=1;SPV=0.010514;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,11:16,9:6,2 +chr10 11662229 . G A 0 PASS DP=44;GPV=1;SPV=0.12928;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr10 12131682 . CT C 0 PASS DP=28;GPV=1;SPV=0.053755;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,6:5,1:6,5 +chr10 12256163 . CA C 0 PASS DP=35;GPV=1;SPV=0.03895;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:13,8:3,1 +chr10 12330744 . CTTTTTTTTTTTTTT C 0 PASS DP=39;GPV=1;SPV=0.016858;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:8,3:1,2 +chr10 12385739 . CT C 0 PASS DP=40;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,13:5,9:2,4 +chr10 14191806 . TC T 0 PASS DP=84;GPV=1;SPV=0.024274;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:17,3:19,2 +chr10 14374865 . G A 0 PASS DP=49;GPV=1;SPV=0.022357;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:15,2:3,6 +chr10 14628112 . G GTTTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:6,1:8,3 +chr10 15379603 . G GTT 0 PASS DP=37;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,5:5,4:4,1 +chr10 15390270 . A AT 0 PASS DP=62;GPV=1;SPV=0.02262;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,8:13,6:14,2 +chr10 15930344 . G A 0 PASS DP=122;GPV=1;SPV=0.0023029;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:51,8:27,2:24,6 +chr10 17520917 . GA G 0 PASS DP=34;GPV=1;SPV=0.11029;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,2:4,2:0,0 +chr10 18426955 . A ATTTTTTTT 0 PASS DP=42;GPV=1;SPV=0.0070913;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,10:2,4:4,6 +chr10 18563165 . AATGGAATGGAATGGAGAATGGT A 0 PASS DP=68;GPV=1;SPV=0.027747;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:13,3:19,7 +chr10 19023687 . T C 0 PASS DP=80;GPV=1;SPV=0.0047508;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:24,6:13,3 +chr10 19885779 . A G 0 PASS DP=95;GPV=1;SPV=0.032911;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:27,4:17,1 +chr10 20682249 . T TA 0 PASS DP=50;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,9:8,8:5,1 +chr10 21664944 . C CTT 0 PASS DP=34;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,9:5,6:5,3 +chr10 22298888 . C T 0 PASS DP=79;GPV=1;SPV=0.0029478;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,6:16,2 +chr10 23051201 . T C 0 PASS DP=87;GPV=1;SPV=0.032391;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:16,5:20,4 +chr10 25200869 . T G 0 PASS DP=50;GPV=1;SPV=0.14184;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,6:11,3:9,3 +chr10 25211071 . G A 0 PASS DP=102;GPV=1;SPV=0.00067164;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:21,7:23,4 +chr10 25713463 . T G 0 PASS DP=84;GPV=1;SPV=0.014855;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,10:9,8:9,2 +chr10 25753378 . A G 0 PASS DP=33;GPV=1;SPV=0.024497;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:10,4:3,2 +chr10 25908233 . G A 0 PASS DP=61;GPV=1;SPV=0.12491;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,4:10,1:11,3 +chr10 27404164 . A C 0 PASS DP=90;GPV=1;SPV=0.005129;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:20,4:17,3 +chr10 27446902 . CTTTTCT C 0 PASS DP=53;GPV=1;SPV=0.0084291;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,6:5,1:4,5 +chr10 27656879 . T A 0 PASS DP=54;GPV=1;SPV=0.0048547;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,10:2,2:5,8 +chr10 27948779 . A ATT 0 PASS DP=42;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,4:14,3:5,1 +chr10 28465570 . C CA 0 PASS DP=64;GPV=1;SPV=0.010573;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,10:10,7:10,3 +chr10 28521937 . G A 0 PASS DP=113;GPV=1;SPV=0.00011299;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:25,6:19,6 +chr10 29481168 . T G 0 PASS DP=76;GPV=1;SPV=0.11468;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:13,3:32,2 +chr10 29507556 . CAT C 0 PASS DP=59;GPV=1;SPV=0.033939;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:15,2:11,3 +chr10 30073685 . C G 0 PASS DP=62;GPV=1;SPV=0.036876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:10,4:16,7 +chr10 31312481 . G C 0 PASS DP=104;GPV=1;SPV=0.0064153;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:23,4:26,4 +chr10 31889619 . GT G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,2:3,2 +chr10 31920449 . C CAAA 0 PASS DP=44;GPV=1;SPV=0.20433;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,6:17,5:6,1 +chr10 31922180 . CAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.023045;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,9:3,6:4,3 +chr10 33897211 . G T 0 PASS DP=96;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:32,5:19,3:13,2 +chr10 34371514 . AAAAAAAAAAAAAAAAAAAC A 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr10 35262257 . C CAAA 0 PASS DP=45;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,7:3,6:5,1 +chr10 36383345 . A G 0 PASS DP=103;GPV=1;SPV=0.00022873;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:29,6:15,7 +chr10 38071302 . C CAAA 0 PASS DP=45;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:9,7:7,2 +chr10 38215937 . C CT 0 PASS DP=33;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:12,5:1,1 +chr10 38600954 . C T 0 PASS DP=25;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,1:4,6 +chr10 38651226 . A C 0 PASS DP=94;GPV=1;SPV=0.026174;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:27,6:18,3 +chr10 38953450 . T C 0 PASS DP=414;GPV=1;SPV=0.023922;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:238:210,28:107,18:103,10 +chr10 39720018 . T G 0 PASS DP=80;GPV=1;SPV=0.0032962;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:28,6:5,2 +chr10 39986132 . T A 0 PASS DP=62;GPV=1;SPV=0.11839;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:33,4:0,0 +chr10 39998840 . G A 0 PASS DP=513;GPV=1;SPV=0.001616;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:277:243,34:143,25:100,9 +chr10 40278008 . T TA 0 PASS DP=415;GPV=1;SPV=0.0062425;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:236:195,39:157,31:38,8 +chr10 40421309 . C T 0 PASS DP=126;GPV=1;SPV=0.03755;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:33,5:33,4 +chr10 40477143 . A T 0 PASS DP=178;GPV=1;SPV=0.00059398;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:67,29:50,22:17,7 +chr10 40701121 . C T 0 PASS DP=39;GPV=1;SPV=0.32006;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:17,1:7,2 +chr10 40792873 . A G 0 PASS DP=198;GPV=1;SPV=0.014753;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,21:42,4:45,17 +chr10 41066625 . T A 0 PASS DP=50;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:8,1:15,3 +chr10 41072437 . G A 0 PASS DP=180;GPV=1;SPV=0.041395;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:93,20:53,10:40,10 +chr10 41413507 . C G 0 PASS DP=113;GPV=1;SPV=0.020165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:19,1:40,6 +chr10 41550741 . A G 0 PASS DP=201;GPV=1;SPV=0.0090706;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:96,18:34,8:62,10 +chr10 41559853 . T A 0 PASS DP=222;GPV=1;SPV=0.034486;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:110,26:87,10:23,16 +chr10 41584224 . A T 0 PASS DP=330;GPV=1;SPV=0.041571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:192:169,23:112,19:57,4 +chr10 41587208 . G T 0 PASS DP=154;GPV=1;SPV=0.041845;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:79,11:13,6:66,5 +chr10 41592961 . A T 0 PASS DP=46;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:0,9:17,1 +chr10 41874905 . G GGAATGGAATGCAACA 0 PASS DP=96;GPV=1;SPV=0.0073197;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:33,10:22,3:11,7 +chr10 41882526 . C T 0 PASS DP=484;GPV=1;SPV=0.0071833;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:215,39:112,24:103,15 +chr10 41899853 . C CGAATGGAATG 0 PASS DP=161;GPV=1;SPV=0.024355;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:37,11:18,4:19,7 +chr10 41912099 . T A 0 PASS DP=410;GPV=1;SPV=0.02222;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:205,30:108,20:97,10 +chr10 42073671 . T A 0 PASS DP=3712;GPV=1;SPV=0.016542;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2025:1788,237:832,129:956,108 +chr10 42079479 . C T 0 PASS DP=4454;GPV=1;SPV=0.022841;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:2370:2099,271:1599,238:500,33 +chr10 42085585 . G C 0 PASS DP=192;GPV=1;SPV=0.038256;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:90,11:18,3:72,8 +chr10 42085807 . G A 0 PASS DP=473;GPV=1;SPV=0.0037187;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:249,29:133,13:116,16 +chr10 42130126 . T C 0 PASS DP=692;GPV=1;SPV=0.024327;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:380:325,55:159,30:166,25 +chr10 42130137 . G C 0 PASS DP=728;GPV=1;SPV=0.034664;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:398:345,53:170,16:175,37 +chr10 42766332 . G A 0 PASS DP=53;GPV=1;SPV=0.20063;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:26,4:8,1 +chr10 42831180 . G A 0 PASS DP=107;GPV=1;SPV=0.0058807;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:31,5:19,3 +chr10 42891280 . G A 0 PASS DP=77;GPV=1;SPV=0.00010642;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:15,5:12,7 +chr10 44382770 . A C 0 PASS DP=112;GPV=1;SPV=4.5383e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:46,21:21,15:25,6 +chr10 45741650 . C T 0 PASS DP=115;GPV=1;SPV=0.014179;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:29,6:28,1 +chr10 45836673 . A G 0 PASS DP=40;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,7:4,4 +chr10 46323835 . C T 0 PASS DP=92;GPV=1;SPV=0.0080848;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:24,6:20,2 +chr10 46484868 . A T 0 PASS DP=107;GPV=1;SPV=0.014737;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:29,8:22,2 +chr10 46525521 . CAT C 0 PASS DP=164;GPV=1;SPV=0.016073;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,18:31,8:38,10 +chr10 47520838 . TA T 0 PASS DP=68;GPV=1;SPV=0.021295;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,10:13,6:11,4 +chr10 48051799 . G A 0 PASS DP=67;GPV=1;SPV=0.017584;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:11,10:16,2 +chr10 48140522 . G C 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,3:17,1 +chr10 50028240 . GTTTT G 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,3:2,1 +chr10 50748900 . T G 0 PASS DP=84;GPV=1;SPV=0.038215;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,9:18,4:23,5 +chr10 51091344 . C T 0 PASS DP=89;GPV=1;SPV=0.00062159;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:20,5:23,11 +chr10 51285968 . T A 0 PASS DP=77;GPV=1;SPV=0.04872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:20,4:18,1 +chr10 52036899 . G C 0 PASS DP=103;GPV=1;SPV=0.041079;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,11:34,6:16,5 +chr10 52380498 . T C 0 PASS DP=91;GPV=1;SPV=0.0010177;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:27,5:11,5 +chr10 53164463 . G A 0 PASS DP=99;GPV=1;SPV=2.6315e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:20,8:19,8 +chr10 53729877 . T G 0 PASS DP=71;GPV=1;SPV=0.013778;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:13,7:19,4 +chr10 55582628 . A T 0 PASS DP=36;GPV=1;SPV=0.02037;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:5,2:4,3 +chr10 56175687 . G A 0 PASS DP=29;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:5,2:1,1 +chr10 56684222 . G A 0 PASS DP=80;GPV=1;SPV=3.8184e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:14,7:13,6 +chr10 57620739 . C CATATATATATATATAT 0 PASS DP=36;GPV=1;SPV=0.022727;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,3:6,2 +chr10 57811028 . T C 0 PASS DP=109;GPV=1;SPV=1.2729e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:38,18:19,5:19,13 +chr10 61120281 . G GTTT 0 PASS DP=28;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:6,2:7,2 +chr10 61680578 . T TATA 0 PASS DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,7:6,2 +chr10 62977815 . T A 0 PASS DP=33;GPV=1;SPV=0.018244;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:6,5:0,1 +chr10 64460856 . C CT 0 PASS DP=26;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,7:2,1 +chr10 65470642 . T C 0 PASS DP=77;GPV=1;SPV=0.0026067;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:22,6:14,5 +chr10 66380758 . G C 0 PASS DP=84;GPV=1;SPV=0.0019257;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,4:13,5 +chr10 66421834 . CAAAA C 0 PASS DP=41;GPV=1;SPV=0.046847;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,4:2,2 +chr10 66976334 . T C 0 PASS DP=98;GPV=1;SPV=3.5233e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:13,6:17,8 +chr10 68821532 . G A 0 PASS DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:13,2:27,3 +chr10 70045898 . G A 0 PASS DP=70;GPV=1;SPV=0.016941;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:14,1:23,8 +chr10 70311222 . A AT 0 PASS DP=58;GPV=1;SPV=0.02977;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,8:10,5 +chr10 71590884 . AAAC A 0 PASS DP=58;GPV=1;SPV=0.035289;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:8,4:11,2 +chr10 72319091 . C CT 0 PASS DP=59;GPV=1;SPV=0.043948;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:14,3:13,2 +chr10 73724908 . C CT 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:8,3:4,1 +chr10 74018177 . G GATATATATATAT 0 PASS DP=18;GPV=1;SPV=0.014286;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,4:0,0 +chr10 74602105 . C CAA 0 PASS DP=38;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:13,7:1,1 +chr10 75109823 . G T 0 PASS DP=102;GPV=1;SPV=0.0075351;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:30,5:19,3 +chr10 78459622 . C T 0 PASS DP=89;GPV=1;SPV=0.0017333;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:26,8:11,1 +chr10 80032868 . T TAAA 0 PASS DP=71;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:5,4:2,2:3,2 +chr10 80383621 . G GTATACGTATATATATATATATA 0 PASS DP=59;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:13,3:15,1 +chr10 84047174 . C A 0 PASS DP=90;GPV=1;SPV=0.0039955;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:26,5:22,8 +chr10 84437150 . C G 0 PASS DP=77;GPV=1;SPV=0.03989;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:4,6:1,5:3,1 +chr10 84922885 . T TGTAAGAGGTTG 0 PASS DP=81;GPV=1;SPV=0.025097;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:16,3:23,3 +chr10 86600343 . C T 0 PASS DP=87;GPV=1;SPV=0.0036889;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:17,3:20,5 +chr10 86625377 . CTT C 0 PASS DP=36;GPV=1;SPV=0.011299;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:9,7:2,2 +chr10 87219963 . C CA 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr10 87351605 . A G 0 PASS DP=101;GPV=1;SPV=0.018263;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:19,5:23,5 +chr10 87985763 . CAAAAAAAAAAAAAAA C 0 PASS DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr10 88613770 . G GTATA 0 PASS DP=31;GPV=1;SPV=0.0024902;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,8:1,6:2,2 +chr10 90289883 . T TACACACACAC 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:24,2:8,2 +chr10 92582076 . G T 0 PASS DP=88;GPV=1;SPV=0.048675;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:28,1:16,4 +chr10 93644896 . ATATAG A 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3 +chr10 93693480 . GTGTATA G 0 PASS DP=54;GPV=1;SPV=0.020192;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,3:7,7 +chr10 93693509 . C T 0 PASS DP=49;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:8,2:9,8 +chr10 93693514 . TATATATATATATACACC T 0 PASS DP=49;GPV=1;SPV=0.035132;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,1:12,7 +chr10 96025192 . AAT A 0 PASS DP=38;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:10,2:9,2 +chr10 96794402 . T A 0 PASS DP=67;GPV=1;SPV=0.017686;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:15,2:17,5 +chr10 97166543 . GA G 0 PASS DP=53;GPV=1;SPV=0.016354;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:13,2:6,3 +chr10 97449861 . C CTT 0 PASS DP=30;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chr10 99321534 . A C 0 PASS DP=82;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:26,4:21,3 +chr10 99321537 . AAGAACC A 0 PASS DP=82;GPV=1;SPV=0.073758;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:26,5:22,1 +chr10 99922502 . GTT G 0 PASS DP=31;GPV=1;SPV=0.19804;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1 +chr10 99929440 . T C 0 PASS DP=92;GPV=1;SPV=0.00011756;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:16,6:14,4 +chr10 102663393 . A AAAT 0 PASS DP=77;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,4:21,3:9,1 +chr10 103728043 . C A 0 PASS DP=117;GPV=1;SPV=4.2495e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:28,8:22,8 +chr10 103776395 . C CA 0 PASS DP=60;GPV=1;SPV=0.022854;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:8,5:8,3 +chr10 104293563 . A AT 0 PASS DP=71;GPV=1;SPV=0.0061419;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,6:18,4:7,2 +chr10 104306020 . G GGTGT 0 PASS DP=70;GPV=1;SPV=0.00048357;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:14,15:11,12:3,3 +chr10 104534704 . TTCTTTC T 0 PASS DP=49;GPV=1;SPV=0.020689;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,5:2,3:13,2 +chr10 105512880 . C T 0 PASS DP=76;GPV=1;SPV=1.407e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,11:10,3 +chr10 106125874 . A AAG 0 PASS DP=85;GPV=1;SPV=0.012602;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,10:13,6:17,4 +chr10 108123939 . G A 0 PASS DP=92;GPV=1;SPV=6.9523e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:18,5:21,12 +chr10 109500156 . GTGTGGGCTGAATTCTGAGCACTACACATCA G 0 PASS DP=78;GPV=1;SPV=0.03317;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:38,16:22,9:16,7 +chr10 111375645 . T A 0 PASS DP=70;GPV=1;SPV=0.020244;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,7:5,3:10,4 +chr10 113073503 . CA C 0 PASS DP=53;GPV=1;SPV=0.043711;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:16,5:7,3 +chr10 113156115 . C CT 0 PASS DP=57;GPV=1;SPV=0.00077751;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,10:7,9:6,1 +chr10 113348938 . G A 0 PASS DP=87;GPV=1;SPV=0.00080682;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:13,5:24,6 +chr10 114083902 . AATATTATATATAAAT A 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:1,3:7,3 +chr10 118600042 . G A 0 PASS DP=119;GPV=1;SPV=0.00026184;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:26,8:27,5 +chr10 119636647 . G A 0 PASS DP=92;GPV=1;SPV=0.020593;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:25,4:25,4 +chr10 119717299 . A AT 0 PASS DP=90;GPV=1;SPV=0.00018434;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:23,6:10,5 +chr10 121080935 . C T 0 PASS DP=105;GPV=1;SPV=0.00036241;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:18,6:27,6 +chr10 121421866 . G A 0 PASS DP=106;GPV=1;SPV=2.2741e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:22,4:17,10 +chr10 121455813 . C CTT 0 PASS DP=22;GPV=1;SPV=0.041958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:1,3:3,2 +chr10 121650820 . A C 0 PASS DP=62;GPV=1;SPV=0.006961;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:19,3:8,5 +chr10 123068657 . CACAT C 0 PASS DP=87;GPV=1;SPV=0.0091599;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:21,5:18,2 +chr10 123211730 . G GTT 0 PASS DP=50;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:13,6:5,3 +chr10 125826996 . T TAAAAAAAAAAAA 0 PASS DP=67;GPV=1;SPV=0.0082486;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:10,6:8,4 +chr10 125864929 . CAAAAAAAAAAAAAAA C 0 PASS DP=18;GPV=1;SPV=0.0045249;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,5:1,1 +chr10 125894099 . AAT A 0 PASS DP=226;GPV=1;SPV=0.028118;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:100,16:33,4:67,12 +chr10 127755343 . C G 0 PASS DP=101;GPV=1;SPV=7.5652e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:16,8:19,7 +chr10 130347228 . G GT 0 PASS DP=42;GPV=1;SPV=0.0092633;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:7,3:3,6 +chr10 131350780 . G A 0 PASS DP=85;GPV=1;SPV=0.0010195;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:21,4:14,6 +chr10 131746881 . G C 0 PASS DP=72;GPV=1;SPV=0.0052114;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,6:6,2:12,4 +chr10 132816830 . G A 0 PASS DP=102;GPV=1;SPV=2.593e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:34,21:19,9:15,12 +chr10 133011316 . T TTA 0 PASS DP=45;GPV=1;SPV=0.023176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,2:3,3 +chr10 133430349 . A G 0 PASS DP=100;GPV=1;SPV=0.015108;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:24,3:21,3 +chr10 133625834 . C T 0 PASS DP=117;GPV=1;SPV=0.0086278;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:23,3:21,11 +chr10 133657822 . A T 0 PASS DP=389;GPV=1;SPV=0.02169;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:211:175,36:91,22:84,14 +chr11 123174 . AAAAC A 0 PASS DP=142;GPV=1;SPV=0.035374;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:68,10:39,6:29,4 +chr11 349700 . C CAT 0 PASS DP=34;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,1:8,3 +chr11 897146 . C CA 0 PASS DP=50;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:20,5:3,2 +chr11 1096112 . C G 0 PASS DP=85;GPV=1;SPV=0.01598;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:21,5:11,2 +chr11 2917012 . C T 0 PASS DP=84;GPV=1;SPV=0.029749;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:20,8:13,3 +chr11 3754941 . C CA 0 PASS DP=44;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:11,3:10,3 +chr11 4046059 . C CT 0 PASS DP=36;GPV=1;SPV=0.30935;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:10,3:6,2 +chr11 4174497 . G A 0 PASS DP=66;GPV=1;SPV=0.00096207;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:7,8:12,9 +chr11 4233598 . C T 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr11 4244066 . G A 0 PASS DP=62;GPV=1;SPV=0.040748;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:11,5:15,2 +chr11 4297902 . C T 0 PASS DP=81;GPV=1;SPV=0.031471;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,1:15,3 +chr11 4308516 . G A 0 PASS DP=65;GPV=1;SPV=0.065183;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:17,1:21,6 +chr11 4353566 . T C 0 PASS DP=55;GPV=1;SPV=0.036854;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:14,3:8,4 +chr11 4819566 . ATTTT A 0 PASS DP=33;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,4:6,1 +chr11 5692793 . C CAAAAA 0 PASS DP=58;GPV=1;SPV=0.026055;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,8:10,7:9,1 +chr11 8854016 . AT A 0 PASS DP=33;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:9,1:5,3 +chr11 9719093 . C CAAAAA 0 PASS DP=70;GPV=1;SPV=0.0079779;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:17,9:7,3 +chr11 10108515 . CTT C 0 PASS DP=41;GPV=1;SPV=0.19203;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:14,3:9,1 +chr11 12155973 . G A 0 PASS DP=112;GPV=1;SPV=2.1165e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:42,19:16,11:26,8 +chr11 12306140 . G A 0 PASS DP=100;GPV=1;SPV=0.00010265;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,13:18,6:21,7 +chr11 12330900 . A AGAGT 0 PASS DP=53;GPV=1;SPV=0.18393;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,4:18,3:8,1 +chr11 12837681 . T TTTCTCCTTTCTCCC 0 PASS DP=62;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:12,2:16,6 +chr11 15283720 . C CT 0 PASS DP=66;GPV=1;SPV=0.0012048;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,8:11,2 +chr11 18274075 . G A 0 PASS DP=94;GPV=1;SPV=3.3037e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:34,19:22,10:12,9 +chr11 18598411 . CA C 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr11 22334110 . G A 0 PASS DP=65;GPV=1;SPV=0.015385;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:13,10:7,7:6,3 +chr11 22339167 . TATATATATATG T 0 PASS DP=43;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2 +chr11 23228372 . G A 0 PASS DP=50;GPV=1;SPV=0.039737;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,5:6,2:2,3 +chr11 25219930 . CAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:6,4:2,1 +chr11 25650319 . C G 0 PASS DP=95;GPV=1;SPV=0.012311;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:21,8:16,2 +chr11 25650327 . GTATA G 0 PASS DP=89;GPV=1;SPV=0.013578;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,9:17,7:15,2 +chr11 25849885 . T TA 0 PASS DP=91;GPV=1;SPV=0.00014302;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,14:23,5:14,9 +chr11 25857940 . C CTTATTATTATTATTATTA 0 PASS DP=61;GPV=1;SPV=0.0093999;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:14,4:15,5 +chr11 29143731 . G C 0 PASS DP=30;GPV=1;SPV=0.010195;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:4,9:4,1 +chr11 29504566 . C T 0 PASS DP=31;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,7:1,2:2,5 +chr11 30888060 . AAG A 0 PASS DP=55;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:17,5:12,4:5,1 +chr11 30888104 . AAG A 0 PASS DP=63;GPV=1;SPV=0.023578;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,9:14,7:10,2 +chr11 32855211 . C T 0 PASS DP=101;GPV=1;SPV=5e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:17,11:25,5 +chr11 33310270 . G GTCTATCTTATCTATCTA 0 PASS DP=75;GPV=1;SPV=0.071484;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1 +chr11 34237276 . C CT 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:20,4:1,0 +chr11 35887994 . G A 0 PASS DP=77;GPV=1;SPV=0.022257;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:19,5:20,2 +chr11 36793927 . TATATATATA T 0 PASS DP=46;GPV=1;SPV=0.010836;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,5:2,2:2,3 +chr11 37315818 . T C 0 PASS DP=94;GPV=1;SPV=2.1193e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:33,19:15,10:18,9 +chr11 38943261 . T G 0 PASS DP=109;GPV=1;SPV=4.7395e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:24,10:17,3 +chr11 39326384 . T A 0 PASS DP=104;GPV=1;SPV=2.3519e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:17,10:19,7 +chr11 40906706 . C CTG 0 PASS DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2 +chr11 41303775 . C T 0 PASS DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,1:9,4 +chr11 43888382 . C T 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:3,2:2,4 +chr11 45337328 . T C 0 PASS DP=53;GPV=1;SPV=0.045915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,9:9,1 +chr11 47545867 . CTGCGTG C 0 PASS DP=55;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,4:8,1:11,3 +chr11 47862750 . C T 0 PASS DP=90;GPV=1;SPV=0.011497;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:17,3:25,4 +chr11 52225432 . C G 0 PASS DP=37;GPV=1;SPV=0.22636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:1,0:21,4 +chr11 52599572 . T A 0 PASS DP=57;GPV=1;SPV=0.1041;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:25,4:7,1 +chr11 52599777 . G T 0 PASS DP=82;GPV=1;SPV=0.092724;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:6,4:44,2 +chr11 52737767 . C T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0 +chr11 53072080 . A G 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:3,3:16,2 +chr11 53300818 . C A 0 PASS DP=220;GPV=1;SPV=0.01649;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:115,13:43,4:72,9 +chr11 53535337 . T A 0 PASS DP=209;GPV=1;SPV=0.01123;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:98,22:45,10:53,12 +chr11 53616452 . G T 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr11 54256182 . G A 0 PASS DP=246;GPV=1;SPV=0.0093624;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:94,23:37,10:57,13 +chr11 54351934 . C T 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,3:1,1 +chr11 54353579 . C A 0 PASS DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:4,1:8,3 +chr11 54362637 . A T 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,1:10,3 +chr11 54382746 . T G 0 PASS DP=75;GPV=1;SPV=0.060731;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,1:20,3 +chr11 54393362 . C T 0 PASS DP=181;GPV=1;SPV=0.012341;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,19:1,1:88,18 +chr11 54421961 . G A 0 PASS DP=36;GPV=1;SPV=0.04394;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr11 54530924 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr11 54536160 . T G 0 PASS DP=175;GPV=1;SPV=0.029289;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:68,17:35,14:33,3 +chr11 55317589 . C A 0 PASS DP=88;GPV=1;SPV=0.0058707;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:26,2:14,6 +chr11 55568525 . G T 0 PASS DP=75;GPV=1;SPV=1.7247e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,8:10,6 +chr11 55608897 . C CTATATATA 0 PASS DP=39;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,7:5,4:3,3 +chr11 55993111 . A T 0 PASS DP=98;GPV=1;SPV=0.038888;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:22,8:15,2:7,6 +chr11 56498551 . C A 0 PASS DP=88;GPV=1;SPV=0.0003709;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:14,5:16,4 +chr11 56974177 . A AATAT 0 PASS DP=30;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:6,4:1,1 +chr11 58320076 . GT G 0 PASS DP=47;GPV=1;SPV=0.035323;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:10,4:5,4 +chr11 58697156 . G C 0 PASS DP=117;GPV=1;SPV=0.048805;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:35,8:22,2 +chr11 59905247 . C CT 0 PASS DP=29;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,10:3,9:2,1 +chr11 61376652 . A G 0 PASS DP=89;GPV=1;SPV=0.00062737;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:17,6:18,4 +chr11 61657599 . G A 0 PASS DP=47;GPV=1;SPV=0.023031;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,8:8,4:6,4 +chr11 62098145 . T TACACAC 0 PASS DP=70;GPV=1;SPV=0.016315;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,11:14,6:8,5 +chr11 62184483 . A G 0 PASS DP=106;GPV=1;SPV=4.0571e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:19,7:25,9 +chr11 63145562 . A G 0 PASS DP=33;GPV=1;SPV=0.0035559;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:2,4:6,6 +chr11 63177835 . ATGTG A 0 PASS DP=58;GPV=1;SPV=0.012629;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:13,4:8,4 +chr11 64170679 . A ATTTT 0 PASS DP=32;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:3,3:6,4 +chr11 64582112 . T TCACCAC 0 PASS DP=40;GPV=1;SPV=0.25362;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,3:7,1:10,2 +chr11 66270245 . G T 0 PASS DP=63;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,5:7,3:6,2 +chr11 67670248 . G A 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:17,3:6,1 +chr11 68511463 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=55;GPV=1;SPV=0.010126;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,7:9,6:13,1 +chr11 69715028 . AAGAGAGAGAG A 0 PASS DP=56;GPV=1;SPV=0.0092391;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,14:11,10:8,4 +chr11 70678532 . C CT 0 PASS DP=29;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:4,4:2,1 +chr11 71931566 . G A 0 PASS DP=92;GPV=1;SPV=0.00024808;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:21,7:20,8 +chr11 72907599 . G GTT 0 PASS DP=46;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,12:10,8:9,4 +chr11 73735920 . T TAAA 0 PASS DP=40;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,6:4,3 +chr11 73762590 . C T 0 PASS DP=74;GPV=1;SPV=0.0048917;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2 +chr11 74353860 . A G 0 PASS DP=22;GPV=1;SPV=0.0028145;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:1,4:3,2 +chr11 76076802 . G GTATTTATTTATT 0 PASS DP=73;GPV=1;SPV=0.032545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,10:10,5:20,5 +chr11 77920226 . TACATAC T 0 PASS DP=89;GPV=1;SPV=0.0078411;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,8:18,7:22,1 +chr11 78535632 . C CT 0 PASS DP=75;GPV=1;SPV=0.060679;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:23,3:10,1 +chr11 78942108 . TA T 0 PASS DP=71;GPV=1;SPV=0.006277;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:14,5:15,2 +chr11 79124893 . A G 0 PASS DP=56;GPV=1;SPV=0.20154;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,9:17,4:9,5 +chr11 80326049 . C T 0 PASS DP=91;GPV=1;SPV=0.0037001;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:18,7:21,1 +chr11 85598630 . A T 0 PASS DP=99;GPV=1;SPV=0.00022326;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:30,3:10,9 +chr11 85753760 . CT C 0 PASS DP=58;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:23,3:9,1 +chr11 86939405 . T A 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,2:6,2 +chr11 87189098 . CG C 0 PASS DP=63;GPV=1;SPV=0.068696;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:9,2:20,2 +chr11 88080857 . G A 0 PASS DP=40;GPV=1;SPV=0.25926;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:15,4:15,4:0,0 +chr11 89060285 . T C 0 PASS DP=89;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:23,4:12,2:11,2 +chr11 89157084 . T TATAC 0 PASS DP=26;GPV=1;SPV=0.07913;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,3:3,1 +chr11 89422795 . A AT 0 PASS DP=55;GPV=1;SPV=0.0023788;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,9:7,8:4,1 +chr11 89757187 . G A 0 PASS DP=44;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:7,7:2,1 +chr11 89861631 . C T 0 PASS DP=119;GPV=1;SPV=0.018449;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:25,6:26,4 +chr11 90552211 . GT G 0 PASS DP=51;GPV=1;SPV=0.0032719;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:9,9:6,4 +chr11 91670125 . A T 0 PASS DP=43;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:4,2:2,1:2,1 +chr11 92010898 . C T 0 PASS DP=92;GPV=1;SPV=0.0011397;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:11,2:28,8 +chr11 92293064 . G A 0 PASS DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,4:9,1 +chr11 92712942 . T C 0 PASS DP=86;GPV=1;SPV=0.013703;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:22,1:19,6 +chr11 93591583 . C A 0 PASS DP=27;GPV=1;SPV=0.015718;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:2,1:3,6 +chr11 95337512 . C A 0 PASS DP=67;GPV=1;SPV=0.051974;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:26,2:7,3 +chr11 96232615 . G A 0 PASS DP=93;GPV=1;SPV=0.00032416;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:12,8:28,5 +chr11 96932088 . CTT C 0 PASS DP=35;GPV=1;SPV=0.047101;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,10:5,7:4,3 +chr11 97579453 . ACACACACACACACC A 0 PASS DP=64;GPV=1;SPV=0.0073017;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,9:10,5 +chr11 97899853 . GACATATTAAAATAAATTCTTCAGAGAGAACCA G 0 PASS DP=67;GPV=1;SPV=0.0048961;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:17,6:8,4 +chr11 98135976 . C T 0 PASS DP=77;GPV=1;SPV=0.059972;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,6:17,2:18,4 +chr11 98316306 . TA T 0 PASS DP=30;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,2:1,1:3,1 +chr11 98697052 . G T 0 PASS DP=44;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,3:4,1:2,2 +chr11 98859045 . C CTATATATATA 0 PASS DP=36;GPV=1;SPV=0.1226;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:7,5:4,1 +chr11 99727378 . T C 0 PASS DP=69;GPV=1;SPV=0.013425;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:13,11:16,4 +chr11 101046292 . ATTTTTTTTTTTTTTT A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chr11 101622377 . G GAAAGAAA 0 PASS DP=51;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,4:6,3:7,1 +chr11 101629982 . T C 0 PASS DP=58;GPV=1;SPV=0.033473;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,2:11,4 +chr11 102149977 . CTT C 0 PASS DP=27;GPV=1;SPV=0.03311;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,2:3,2 +chr11 103125366 . C CT 0 PASS DP=45;GPV=1;SPV=0.0001763;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,14:7,12:3,2 +chr11 103487799 . A C 0 PASS DP=49;GPV=1;SPV=0.032072;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,9:5,5:11,4 +chr11 103526491 . ATTTTTTTTTTTTTTTTTT A 0 PASS DP=30;GPV=1;SPV=0.015632;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:4,6:7,1 +chr11 105365792 . C T 0 PASS DP=100;GPV=1;SPV=8.9306e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:22,6:17,7 +chr11 106000360 . G A 0 PASS DP=23;GPV=1;SPV=0.010101;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:13:1,4:0,2:1,2 +chr11 106855905 . A C 0 PASS DP=61;GPV=1;SPV=0.0014228;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,18:7,12:9,6 +chr11 107512304 . T G 0 PASS DP=118;GPV=1;SPV=0.046944;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:23,10:29,3 +chr11 107540628 . A C 0 PASS DP=96;GPV=1;SPV=0.038009;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:33,5:26,4 +chr11 108856170 . G A 0 PASS DP=100;GPV=1;SPV=1.5282e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:19,10:16,4 +chr11 111276453 . A AAATATAT 0 PASS DP=54;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:8,9:7,7:1,2 +chr11 112102806 . T C 0 PASS DP=91;GPV=1;SPV=5.656e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:10,8:22,9 +chr11 112255078 . TG T 0 PASS DP=43;GPV=1;SPV=0.14141;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,4:3,2:1,2 +chr11 112677726 . C CTTT 0 PASS DP=45;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:14,8:4,1 +chr11 113210775 . A AACAC 0 PASS DP=62;GPV=1;SPV=0.016244;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,10:14,7:3,3 +chr11 116818311 . AT A 0 PASS DP=72;GPV=1;SPV=0.057736;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,6:20,1:16,5 +chr11 118504565 . A G 0 PASS DP=110;GPV=1;SPV=3.0753e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:42,19:21,13:21,6 +chr11 118609315 . T C 0 PASS DP=49;GPV=1;SPV=0.027862;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:9,1:11,4 +chr11 118802450 . T TATATATATATATA 0 PASS DP=44;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,6:6,4:4,2 +chr11 118831563 . A ATTTATTTTTATT 0 PASS DP=73;GPV=1;SPV=0.021689;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,11:8,3:21,8 +chr11 119818978 . G A 0 PASS DP=80;GPV=1;SPV=0.022061;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,8:8,5:13,3 +chr11 121120793 . G A 0 PASS DP=108;GPV=1;SPV=5.6929e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:25,9:14,3 +chr11 121147059 . A G 0 PASS DP=71;GPV=1;SPV=6.7558e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,7:8,5 +chr11 121765653 . TTCTC T 0 PASS DP=41;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:3,1:8,4 +chr11 121765659 . C G 0 PASS DP=25;GPV=1;SPV=0.024224;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,1:6,4 +chr11 122558020 . CAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,5:10,2 +chr11 123368271 . A G 0 PASS DP=58;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,2:20,3 +chr11 123403451 . A G 0 PASS DP=75;GPV=1;SPV=0.029506;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,5:13,4 +chr11 123614151 . G T 0 PASS DP=99;GPV=1;SPV=6.0843e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:13,7:20,4 +chr11 123709175 . CT C 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:15,2:20,2 +chr11 123750349 . G A 0 PASS DP=98;GPV=1;SPV=0.00017791;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:19,4:23,10 +chr11 124337155 . C CT 0 PASS DP=54;GPV=1;SPV=0.007251;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:5,6:7,3 +chr11 125623068 . CAA C 0 PASS DP=43;GPV=1;SPV=0.0050719;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:13,7:3,1 +chr11 126417787 . T C 0 PASS DP=78;GPV=1;SPV=0.047777;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:16,2:26,4 +chr11 126923098 . TCTTCTC T 0 PASS DP=54;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,4:3,2:23,2 +chr11 126956487 . G A 0 PASS DP=86;GPV=1;SPV=0.0012263;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:19,5:15,4 +chr11 127617757 . C CT 0 PASS DP=36;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:9,4:9,1 +chr11 127992652 . CTT C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,1:6,3 +chr11 128985860 . A G 0 PASS DP=63;GPV=1;SPV=0.06037;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2 +chr11 129043381 . C CT 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr11 130091047 . A C 0 PASS DP=127;GPV=1;SPV=0.0011005;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:45,20:20,10:25,10 +chr11 131680469 . C CTG 0 PASS DP=53;GPV=1;SPV=0.0083484;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:10,5:7,7 +chr11 132069996 . A T 0 PASS DP=56;GPV=1;SPV=0.02791;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,2:14,4 +chr11 132217352 . C T 0 PASS DP=71;GPV=1;SPV=0.094058;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:18,2:18,2 +chr11 132599386 . A G 0 PASS DP=61;GPV=1;SPV=0.049096;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,4:9,1:9,3 +chr11 134896512 . C T 0 PASS DP=103;GPV=1;SPV=0.00036516;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:23,6:21,6 +chr12 43841 . T C 0 PASS DP=192;GPV=1;SPV=0.016532;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:91,11:66,9:25,2 +chr12 422048 . AC A 0 PASS DP=47;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:15,1:7,2 +chr12 1501253 . T A 0 PASS DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,1:11,3 +chr12 1604830 . A AGT 0 PASS DP=21;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr12 1933007 . A G 0 PASS DP=95;GPV=1;SPV=0.026239;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:24,8:17,2 +chr12 3072183 . C CTT 0 PASS DP=34;GPV=1;SPV=0.033054;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:2,2:7,6 +chr12 5133551 . A G 0 PASS DP=91;GPV=1;SPV=0.0003312;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:20,8:19,5 +chr12 5658624 . A G 0 PASS DP=106;GPV=1;SPV=0.031023;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:47,16:25,13:22,3 +chr12 5932324 . A G 0 PASS DP=80;GPV=1;SPV=0.025884;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:38,15:19,9:19,6 +chr12 5998499 . ATAT A 0 PASS DP=27;GPV=1;SPV=0.060606;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,6:2,4:0,2 +chr12 6400481 . T C 0 PASS DP=85;GPV=1;SPV=0.0078411;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:18,4:22,4 +chr12 7197123 . A AT 0 PASS DP=48;GPV=1;SPV=0.071698;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:10,3:13,2 +chr12 7197197 . T A 0 PASS DP=82;GPV=1;SPV=0.0031015;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:16,6:16,9 +chr12 7197198 . A AT 0 PASS DP=86;GPV=1;SPV=0.036143;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:17,4:21,6 +chr12 7300180 . AG A 0 PASS DP=51;GPV=1;SPV=0.05062;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:14,3:7,1 +chr12 7421606 . C T 0 PASS DP=34;GPV=1;SPV=0.020229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:4,3:2,4 +chr12 7874783 . A ACG 0 PASS DP=57;GPV=1;SPV=0.057887;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:12,2:15,3 +chr12 8983395 . C CT 0 PASS DP=54;GPV=1;SPV=0.025395;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:7,2:6,5 +chr12 9284446 . G A 0 PASS DP=77;GPV=1;SPV=0.045574;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:14,4:11,5 +chr12 9440307 . A G 0 PASS DP=120;GPV=1;SPV=0.021699;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:61,10:20,1:41,9 +chr12 9445081 . A G 0 PASS DP=105;GPV=1;SPV=0.029989;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:34,4:27,4 +chr12 9775802 . C CT 0 PASS DP=51;GPV=1;SPV=0.0040214;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:12,12:6,2 +chr12 10229652 . CTTT C 0 PASS DP=33;GPV=1;SPV=0.047343;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:6,4:0,0 +chr12 10860794 . GGGAAA G 0 PASS DP=21;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:3,4:1,1 +chr12 11301199 . G T 0 PASS DP=52;GPV=1;SPV=0.21758;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,1:14,3 +chr12 12433348 . A AAT 0 PASS DP=44;GPV=1;SPV=0.015123;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,12:8,9:4,3 +chr12 14586637 . CAT C 0 PASS DP=69;GPV=1;SPV=0.095143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,2:16,2 +chr12 14684586 . TTCCTTCC T 0 PASS DP=20;GPV=1;SPV=0.0011312;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,7:0,3:2,4 +chr12 16157109 . CTT C 0 PASS DP=47;GPV=1;SPV=0.021442;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:12,3:8,3 +chr12 16523882 . G A 0 PASS DP=109;GPV=1;SPV=0.00035725;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:22,7:25,5 +chr12 17001438 . G A 0 PASS DP=91;GPV=1;SPV=1.2854e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:12,3:21,13 +chr12 17429190 . G A 0 PASS DP=95;GPV=1;SPV=0.0037716;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:21,5:23,4 +chr12 17437782 . A C 0 PASS DP=90;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:10,4:4,3:6,1 +chr12 17535764 . G A 0 PASS DP=78;GPV=1;SPV=0.0075589;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:17,3:19,5 +chr12 18650700 . GTGTGTATATATCTATATATATATATATATATATATATATATATATA G 0 PASS DP=26;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:4,6:2,3 +chr12 20195673 . A T 0 PASS DP=100;GPV=1;SPV=0.00062967;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:25,6:24,9 +chr12 20386122 . AAT A 0 PASS DP=50;GPV=1;SPV=0.020906;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:13,2:10,6 +chr12 21579349 . CTT C 0 PASS DP=48;GPV=1;SPV=0.018977;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,12:7,9:6,3 +chr12 22651683 . T C 0 PASS DP=70;GPV=1;SPV=0.12521;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,8:17,6:9,2 +chr12 22655358 . C T 0 PASS DP=76;GPV=1;SPV=0.0019815;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,17:13,10:12,7 +chr12 23184603 . A AT 0 PASS DP=32;GPV=1;SPV=0.14757;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:6,3:3,1 +chr12 24965737 . T C 0 PASS DP=87;GPV=1;SPV=0.00021938;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:17,9:17,3 +chr12 26182586 . T TC 0 PASS DP=30;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:3,1:7,3 +chr12 29076043 . GAA G 0 PASS DP=29;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr12 29588287 . C T 0 PASS DP=104;GPV=1;SPV=0.0013642;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:26,2:20,8 +chr12 30698745 . T C 0 PASS DP=32;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:2,3:0,1:2,2 +chr12 31256208 . CTTTCTTTCTTTCTT C 0 PASS DP=39;GPV=1;SPV=0.16484;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,2:0,0:4,2 +chr12 31600148 . TAA T 0 PASS DP=45;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:5,3:6,3 +chr12 32118087 . A AT 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2 +chr12 34396603 . G T 0 PASS DP=113;GPV=1;SPV=0.00018046;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:24,4:22,8 +chr12 34809155 . C T 0 PASS DP=131;GPV=1;SPV=0.048332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:26,7:32,8 +chr12 34897693 . C A 0 PASS DP=412;GPV=1;SPV=0.044198;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:213,34:190,29:23,5 +chr12 34900136 . G C 0 PASS DP=100;GPV=1;SPV=0.028877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:16,9:36,7 +chr12 34907389 . C G 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,1:5,3 +chr12 35119500 . G C 0 PASS DP=133;GPV=1;SPV=0.047506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:63,18:38,14:25,4 +chr12 35131522 . C A 0 PASS DP=41;GPV=1;SPV=0.3107;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,0:27,4 +chr12 35346166 . A G 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 35410170 . C A 0 PASS DP=130;GPV=1;SPV=0.019872;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:64,17:19,5:45,12 +chr12 35536409 . T G 0 PASS DP=80;GPV=1;SPV=0.029251;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:14,4:18,5 +chr12 35732599 . C A 0 PASS DP=35;GPV=1;SPV=0.33518;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:23,4:0,0 +chr12 36077545 . C T 0 PASS DP=57;GPV=1;SPV=0.0048798;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:1,1:20,10 +chr12 36081326 . G A 0 PASS DP=494;GPV=1;SPV=0.037777;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:289:249,40:112,13:137,27 +chr12 36345295 . G A 0 PASS DP=307;GPV=1;SPV=0.026669;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:141,20:48,9:93,11 +chr12 36354434 . A T 0 PASS DP=220;GPV=1;SPV=0.021426;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:111,23:56,15:55,8 +chr12 36440145 . G C 0 PASS DP=284;GPV=1;SPV=0.028831;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:72,10:69,9 +chr12 36512617 . G A 0 PASS DP=118;GPV=1;SPV=0.018096;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:61,11:57,3:4,8 +chr12 36687647 . T A 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,1:18,3 +chr12 36941561 . T A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 37065138 . T C 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr12 37109804 . AC A 0 PASS DP=65;GPV=1;SPV=0.09755;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:24,1:9,3 +chr12 37109806 . G A 0 PASS DP=66;GPV=1;SPV=0.10242;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:25,1:9,3 +chr12 37235869 . C T 0 PASS DP=166;GPV=1;SPV=0.024763;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:76,12:21,3:55,9 +chr12 37239433 . A T 0 PASS DP=89;GPV=1;SPV=0.040852;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:20,4:13,3 +chr12 37239914 . T G 0 PASS DP=94;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:25,3:16,2 +chr12 37570739 . T G 0 PASS DP=90;GPV=1;SPV=0.0060738;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:19,4:19,3 +chr12 39534883 . G A 0 PASS DP=66;GPV=1;SPV=0.022431;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,8:16,5:6,3 +chr12 39653558 . T TTC 0 PASS DP=50;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,5:11,3:7,2 +chr12 41270326 . CTGTG C 0 PASS DP=89;GPV=1;SPV=0.071318;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:20,4:11,2:9,2 +chr12 41713007 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,3:5,1 +chr12 41744307 . T TTTTTC 0 PASS DP=58;GPV=1;SPV=0.027873;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,10:12,4:9,6 +chr12 41950085 . CT C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr12 42485239 . GTTTTTT G 0 PASS DP=47;GPV=1;SPV=0.045738;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:12,4:5,1 +chr12 45376368 . T C 0 PASS DP=76;GPV=1;SPV=0.024372;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:12,4:19,10 +chr12 46874014 . TTC T 0 PASS DP=53;GPV=1;SPV=0.014083;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:8,5:11,3 +chr12 48055293 . C T 0 PASS DP=85;GPV=1;SPV=0.00012694;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:18,8:16,6 +chr12 48271915 . C CTTT 0 PASS DP=78;GPV=1;SPV=0.046436;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,6:24,5:7,1 +chr12 48879131 . G A 0 PASS DP=78;GPV=1;SPV=0.0070569;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:19,4:14,3 +chr12 49313495 . CT C 0 PASS DP=39;GPV=1;SPV=0.0074524;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,13:8,9:4,4 +chr12 49385862 . TG T 0 PASS DP=77;GPV=1;SPV=0.030617;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:21,5:20,2 +chr12 49548096 . G A 0 PASS DP=102;GPV=1;SPV=0.029376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:29,10:12,3:17,7 +chr12 51721081 . T TTATATA 0 PASS DP=39;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:11,1:11,3 +chr12 52374729 . A G 0 PASS DP=92;GPV=1;SPV=0.00024819;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:20,4:15,7 +chr12 52423554 . G A 0 PASS DP=101;GPV=1;SPV=4.8427e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:43,17:23,9:20,8 +chr12 52943056 . G A 0 PASS DP=99;GPV=1;SPV=2.468e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:18,7:18,7 +chr12 55098653 . C T 0 PASS DP=53;GPV=1;SPV=0.034248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2 +chr12 55928676 . CAAA C 0 PASS DP=42;GPV=1;SPV=0.027524;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,7:6,1 +chr12 56690308 . T TAA 0 PASS DP=38;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:7,5:6,1 +chr12 57970676 . G A 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,2:17,2 +chr12 60537210 . A G 0 PASS DP=84;GPV=1;SPV=0.00030968;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:17,5:15,6 +chr12 61400232 . ATTTAAGAATATTTAAATAAAGAATTAGTATATTC A 0 PASS DP=85;GPV=1;SPV=0.0062315;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:20,5:18,7 +chr12 61461169 . GA G 0 PASS DP=99;GPV=1;SPV=0.0051771;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:22,3:23,5 +chr12 63011208 . A C 0 PASS DP=110;GPV=1;SPV=0.00026049;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,14:32,8:18,6 +chr12 63839163 . A AAAAC 0 PASS DP=64;GPV=1;SPV=0.032183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,5:14,3 +chr12 66390272 . G A 0 PASS DP=91;GPV=1;SPV=0.0024615;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:15,7:27,3 +chr12 67184674 . A G 0 PASS DP=34;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,4:5,4 +chr12 69200826 . TGAGG T 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,3:3,1 +chr12 69299620 . CT C 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,3:3,3 +chr12 69357532 . C CTT 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:11,2:12,2 +chr12 69840286 . C T 0 PASS DP=112;GPV=1;SPV=0.00010162;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:25,9:24,6 +chr12 69960686 . C CT 0 PASS DP=54;GPV=1;SPV=0.0082862;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:11,6:7,6 +chr12 70596519 . T TA 0 PASS DP=101;GPV=1;SPV=0.025619;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:26,1:24,5 +chr12 71901930 . T C 0 PASS DP=93;GPV=1;SPV=0.00015233;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:23,10:17,5 +chr12 72551787 . A G 0 PASS DP=101;GPV=1;SPV=8.2952e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:15,8:17,5 +chr12 75429935 . T TTTTC 0 PASS DP=65;GPV=1;SPV=0.016397;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,4:11,5 +chr12 75669850 . ATTTTTTTTTTT A 0 PASS DP=23;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,4:1,1:2,3 +chr12 76019229 . C CATATATATATAT 0 PASS DP=36;GPV=1;SPV=0.0094835;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,9:7,6:6,3 +chr12 78274684 . C CT 0 PASS DP=40;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:9,5:7,1 +chr12 79179243 . G GAT 0 PASS DP=64;GPV=1;SPV=0.023972;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,1:10,8 +chr12 79632300 . TATATATACATAC T 0 PASS DP=40;GPV=1;SPV=0.015215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:11,7:2,1 +chr12 79632312 . C T 0 PASS DP=29;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,2:4,1:1,1 +chr12 80431621 . C CT 0 PASS DP=43;GPV=1;SPV=0.0017568;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,13:11,9:1,4 +chr12 80552643 . AATTATATAT A 0 PASS DP=22;GPV=1;SPV=0.01806;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:3,1:1,3 +chr12 82227812 . A AATGTTTATT 0 PASS DP=90;GPV=1;SPV=0.020631;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:19,5:27,2 +chr12 82227814 . A T 0 PASS DP=90;GPV=1;SPV=0.023704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:21,5:26,2 +chr12 82227815 . A T 0 PASS DP=88;GPV=1;SPV=0.037567;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:20,4:26,2 +chr12 84155582 . G A 0 PASS DP=111;GPV=1;SPV=0.00068089;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:24,9:29,4 +chr12 85993908 . C T 0 PASS DP=116;GPV=1;SPV=0.016475;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:38,7:28,2 +chr12 86595999 . C T 0 PASS DP=87;GPV=1;SPV=0.00082226;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:18,8:22,5 +chr12 86612739 . CA C 0 PASS DP=64;GPV=1;SPV=0.00042315;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:12,5:8,4 +chr12 87202646 . A T 0 PASS DP=90;GPV=1;SPV=0.00049606;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:22,4:10,5 +chr12 87747203 . C A 0 PASS DP=63;GPV=1;SPV=0.010857;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:11,2:13,11 +chr12 88522481 . G A 0 PASS DP=92;GPV=1;SPV=3.2868e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:12,8:24,8 +chr12 90093214 . C A 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:10,3:8,1 +chr12 90866407 . G A 0 PASS DP=47;GPV=1;SPV=0.24135;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:20,3:8,1 +chr12 93401164 . A G 0 PASS DP=107;GPV=1;SPV=0.037663;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:52,8:16,1:36,7 +chr12 93614404 . T C 0 PASS DP=41;GPV=1;SPV=0.012068;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:2,1:13,5 +chr12 96220382 . A AT 0 PASS DP=60;GPV=1;SPV=0.0062647;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,12:20,9:8,3 +chr12 96291628 . C CT 0 PASS DP=28;GPV=1;SPV=0.015561;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:5,7:4,1 +chr12 96909176 . C CA 0 PASS DP=57;GPV=1;SPV=0.0082862;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:12,9:6,3 +chr12 101437951 . C T 0 PASS DP=87;GPV=1;SPV=0.0048847;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:28,3:13,6 +chr12 101810432 . T TAC 0 PASS DP=31;GPV=1;SPV=0.076628;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:10,3:2,1 +chr12 102829664 . A T 0 PASS DP=57;GPV=1;SPV=0.0032271;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:10,5:9,5 +chr12 102831578 . T A 0 PASS DP=94;GPV=1;SPV=0.044568;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:28,1:23,5 +chr12 103039964 . T C 0 PASS DP=92;GPV=1;SPV=0.0098054;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:25,4:17,3 +chr12 103224524 . A G 0 PASS DP=95;GPV=1;SPV=0.030671;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:22,1:22,7 +chr12 103259056 . T G 0 PASS DP=107;GPV=1;SPV=6.1657e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:49,19:18,10:31,9 +chr12 103831770 . CT C 0 PASS DP=40;GPV=1;SPV=0.0047817;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,6:7,3 +chr12 104323684 . A C 0 PASS DP=75;GPV=1;SPV=0.022711;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,3:10,7 +chr12 105036516 . A T 0 PASS DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:4,1:1,1 +chr12 105598715 . A ATGTGTG 0 PASS DP=56;GPV=1;SPV=0.02761;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,11:15,8:8,3 +chr12 106109555 . GA G 0 PASS DP=42;GPV=1;SPV=0.021089;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,11:13,9:2,2 +chr12 106115736 . G A 0 PASS DP=104;GPV=1;SPV=9.0588e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:20,7:21,6 +chr12 107069643 . A T 0 PASS DP=78;GPV=1;SPV=0.0070569;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:22,3:11,4 +chr12 112655563 . C CT 0 PASS DP=25;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:4,4:6,1 +chr12 113432209 . CTTCTTTCTTTCTTTCT C 0 PASS DP=44;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:3,1:14,4 +chr12 113642131 . C T 0 PASS DP=38;GPV=1;SPV=0.028886;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,10:3,1:6,9 +chr12 113941612 . A T 0 PASS DP=104;GPV=1;SPV=0.031957;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:32,10:20,4:12,6 +chr12 114207721 . A ATT 0 PASS DP=58;GPV=1;SPV=0.045384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,10:15,6:11,4 +chr12 114912242 . C A 0 PASS DP=116;GPV=1;SPV=0.0073381;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:49,12:28,4:21,8 +chr12 115083989 . G A 0 PASS DP=103;GPV=1;SPV=0.00025208;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:27,9:19,5 +chr12 115909594 . A G 0 PASS DP=119;GPV=1;SPV=1.0227e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:41,22:22,10:19,12 +chr12 116385440 . C CTTT 0 PASS DP=38;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:7,5:6,1 +chr12 117285531 . GA G 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:26,3:7,1 +chr12 117321992 . C T 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chr12 118003891 . C CA 0 PASS DP=67;GPV=1;SPV=0.019651;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:17,5:12,1 +chr12 118709094 . T TTC 0 PASS DP=42;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,10:1,4:5,6 +chr12 118757668 . T G 0 PASS DP=34;GPV=1;SPV=0.015632;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:5,2:6,5 +chr12 119075452 . G A 0 PASS DP=53;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1 +chr12 119377254 . CA C 0 PASS DP=46;GPV=1;SPV=0.0087645;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:13,10:3,1 +chr12 120441974 . ATTAT A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr12 122156931 . G A 0 PASS DP=71;GPV=1;SPV=0.00047755;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:14,7:16,7 +chr12 122696119 . A G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr12 125390634 . G A 0 PASS DP=87;GPV=1;SPV=0.00089506;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:27,6:12,6 +chr12 126225669 . CT C 0 PASS DP=69;GPV=1;SPV=0.0086452;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,9:11,4:15,5 +chr12 126697301 . G T 0 PASS DP=96;GPV=1;SPV=0.0023465;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:28,5:14,4 +chr12 127103899 . C CA 0 PASS DP=29;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,4:4,1 +chr12 127341272 . C CAAAAA 0 PASS DP=42;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,5:10,4:6,1 +chr12 127480647 . C G 0 PASS DP=22;GPV=1;SPV=0.055341;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr12 127747591 . T TTTCC 0 PASS DP=59;GPV=1;SPV=0.043618;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,7:7,3:9,4 +chr12 128016648 . A C 0 PASS DP=40;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,2:4,1:2,1 +chr12 128701903 . T C 0 PASS DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:21,2:11,2 +chr12 129043525 . C T 0 PASS DP=90;GPV=1;SPV=0.0012547;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,4:17,5 +chr12 130533037 . G T 0 PASS DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,4:8,2 +chr12 131539486 . ATGGTGATGG A 0 PASS DP=59;GPV=1;SPV=0.031797;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,6:12,2 +chr12 132165171 . TATA T 0 PASS DP=33;GPV=1;SPV=0.0054438;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:4,2:7,6 +chr12 132463893 . G T 0 PASS DP=45;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:8,1:8,3 +chr12 132758936 . T A 0 PASS DP=59;GPV=1;SPV=0.037005;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:11,4:7,4 +chr13 18318089 . TTTTA T 0 PASS DP=252;GPV=1;SPV=0.049683;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:84,11:40,8:44,3 +chr13 21393699 . CAA C 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:10,4:1,0 +chr13 21853434 . T TA 0 PASS DP=98;GPV=1;SPV=0.010252;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:26,2:18,8 +chr13 22379938 . C G 0 PASS DP=108;GPV=1;SPV=5.5065e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:22,3:21,11 +chr13 22701443 . GTTTTTTTTTTTTTTTTTTTTTTTTTTTT G 0 PASS DP=34;GPV=1;SPV=0.042547;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,3:5,2 +chr13 23059875 . TTC T 0 PASS DP=57;GPV=1;SPV=0.010151;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:4,1:15,4 +chr13 23101730 . T C 0 PASS DP=43;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:19,2:4,3 +chr13 23318367 . G C 0 PASS DP=92;GPV=1;SPV=0.00018163;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:19,6:21,9 +chr13 24406427 . G A 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,2:15,2 +chr13 24584653 . T A 0 PASS DP=92;GPV=1;SPV=0.00014015;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:41,17:22,7:19,10 +chr13 24587447 . T C 0 PASS DP=167;GPV=1;SPV=0.049596;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:24,10:61,9 +chr13 24764890 . T G 0 PASS DP=75;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:40:1,6:1,4:0,2 +chr13 24961756 . T C 0 PASS DP=65;GPV=1;SPV=0.030258;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:11,9:15,1 +chr13 25399397 . C CTTTTTTT 0 PASS DP=20;GPV=1;SPV=0.011312;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,6:2,5:2,1 +chr13 25888068 . A ACCCC 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4 +chr13 25953522 . T TA 0 PASS DP=68;GPV=1;SPV=0.064424;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,5:21,4:13,1 +chr13 26982961 . A AAAG 0 PASS DP=76;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,4:20,1:7,3 +chr13 27466530 . T C 0 PASS DP=102;GPV=1;SPV=0.00043273;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:26,6:20,7 +chr13 28059974 . A C 0 PASS DP=60;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:4,3:2,1:2,2 +chr13 28099048 . T C 0 PASS DP=96;GPV=1;SPV=0.00091067;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:24,5:16,5 +chr13 29566785 . T C 0 PASS DP=117;GPV=1;SPV=0.00076988;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,7:20,2 +chr13 31999431 . C T 0 PASS DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,1:15,3 +chr13 33178023 . G GA 0 PASS DP=24;GPV=1;SPV=0.0085139;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,5:3,1 +chr13 34013843 . A T 0 PASS DP=86;GPV=1;SPV=0.0084455;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:16,4:22,3 +chr13 34136234 . G A 0 PASS DP=92;GPV=1;SPV=0.0033188;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:15,5:29,5 +chr13 34362913 . CAAAA C 0 PASS DP=29;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:3,5:6,1 +chr13 35809161 . A T 0 PASS DP=99;GPV=1;SPV=0.0005101;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:22,6:23,7 +chr13 38207779 . GAGAGA G 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:20,2:12,2 +chr13 38988367 . T TAA 0 PASS DP=62;GPV=1;SPV=0.10735;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:14,2:13,1 +chr13 39566731 . T TAA 0 PASS DP=36;GPV=1;SPV=0.07478;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:11,3:3,1 +chr13 42836567 . ATATATATAT A 0 PASS DP=20;GPV=1;SPV=0.011905;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:0,6:0,1:0,5 +chr13 43100205 . C CTT 0 PASS DP=30;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:9,2:2,3 +chr13 45019034 . C A 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr13 46625631 . G GT 0 PASS DP=50;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,6:11,4 +chr13 47144838 . G A 0 PASS DP=104;GPV=1;SPV=8.3622e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:19,8:25,7 +chr13 48174576 . A AT 0 PASS DP=62;GPV=1;SPV=0.0081878;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,8:10,7:16,1 +chr13 49378723 . G A 0 PASS DP=39;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:12,3:9,1 +chr13 49775153 . ACT A 0 PASS DP=60;GPV=1;SPV=0.017354;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,8:15,6 +chr13 51604796 . G A 0 PASS DP=86;GPV=1;SPV=0.00039728;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:23,9:16,6 +chr13 52078073 . C CA 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2 +chr13 54177183 . T A 0 PASS DP=107;GPV=1;SPV=1.9766e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:14,9:25,5 +chr13 54874289 . G A 0 PASS DP=101;GPV=1;SPV=0.019164;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:55,8:31,4:24,4 +chr13 55556250 . C CTT 0 PASS DP=53;GPV=1;SPV=0.026086;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,14:7,4:15,10 +chr13 55614797 . A C 0 PASS DP=79;GPV=1;SPV=0.0254;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:24,3:17,4 +chr13 56654601 . C A 0 PASS DP=93;GPV=1;SPV=5.6815e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:22,6:17,11 +chr13 56804533 . G A 0 PASS DP=94;GPV=1;SPV=0.0011362;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:26,8:14,2 +chr13 57884182 . G A 0 PASS DP=100;GPV=1;SPV=0.0096294;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:25,2:21,5 +chr13 58781479 . T C 0 PASS DP=96;GPV=1;SPV=0.020516;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:24,11:18,2:6,9 +chr13 58866893 . T G 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,1:17,3 +chr13 59749444 . C T 0 PASS DP=68;GPV=1;SPV=0.01483;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:23,3:6,3 +chr13 63260054 . T C 0 PASS DP=62;GPV=1;SPV=0.010704;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:10,7:6,2:4,5 +chr13 63429909 . T A 0 PASS DP=77;GPV=1;SPV=0.04872;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:25,2:13,3 +chr13 63864907 . C CTT 0 PASS DP=52;GPV=1;SPV=0.1852;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,5:7,2:15,3 +chr13 64509325 . C A 0 PASS DP=93;GPV=1;SPV=0.00023731;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:19,6:14,4 +chr13 67019188 . C CTT 0 PASS DP=40;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,5:9,3:7,2 +chr13 67174318 . C G 0 PASS DP=73;GPV=1;SPV=0.041983;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:12,4:17,2 +chr13 68412521 . A G 0 PASS DP=108;GPV=1;SPV=1.9489e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:27,9:17,8 +chr13 70292136 . C CAA 0 PASS DP=51;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,9:8,8:6,1 +chr13 70382679 . G GATATATAT 0 PASS DP=39;GPV=1;SPV=0.022595;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:4,2:5,4 +chr13 71118149 . G C 0 PASS DP=31;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:12,2:2,4 +chr13 71700588 . G A 0 PASS DP=32;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,3:1,1:3,2 +chr13 72949960 . A G 0 PASS DP=101;GPV=1;SPV=0.00025924;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:45,14:28,9:17,5 +chr13 74429226 . T C 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:7,2:18,2 +chr13 75771542 . T TTTTAA 0 PASS DP=79;GPV=1;SPV=0.05421;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:18,2:22,3 +chr13 75771545 . T A 0 PASS DP=78;GPV=1;SPV=0.061918;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,5:13,2:23,3 +chr13 75940903 . GT G 0 PASS DP=33;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:5,5:3,1 +chr13 76835153 . T C 0 PASS DP=79;GPV=1;SPV=0.16794;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:26,4:9,2:17,2 +chr13 76835645 . G GAA 0 PASS DP=57;GPV=1;SPV=0.18687;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:31,3:3,1 +chr13 76964894 . G GTTT 0 PASS DP=40;GPV=1;SPV=0.092279;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:13,4:7,1 +chr13 77748398 . CT C 0 PASS DP=31;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:9,5:1,2 +chr13 78078379 . T TAC 0 PASS DP=79;GPV=1;SPV=7.4607e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:11,8:14,7 +chr13 79116653 . TAC T 0 PASS DP=87;GPV=1;SPV=0.049204;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:19,4:18,7 +chr13 80627712 . TTCTCTCTC T 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,4:6,1 +chr13 80848572 . A ATTTCTTTCTTTCTTTCTTTC 0 PASS DP=59;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,8:4,2:22,6 +chr13 81849772 . T C 0 PASS DP=72;GPV=1;SPV=0.0078067;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,10:9,7:7,3 +chr13 82981586 . TAGATA T 0 PASS DP=62;GPV=1;SPV=0.019438;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:14,4:12,5 +chr13 83763729 . G T 0 PASS DP=97;GPV=1;SPV=0.00099218;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:27,6:18,6 +chr13 84580274 . G A 0 PASS DP=92;GPV=1;SPV=0.00025429;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:15,5:22,7 +chr13 85395893 . A G 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:10,3:12,1 +chr13 87074528 . T G 0 PASS DP=79;GPV=1;SPV=0.0064982;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,6:15,4 +chr13 89441315 . T TAGATAGATAGAC 0 PASS DP=82;GPV=1;SPV=0.044315;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,7:14,2:15,5 +chr13 89463802 . T G 0 PASS DP=63;GPV=1;SPV=0.034805;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:12,4:15,4 +chr13 91073961 . C CTG 0 PASS DP=87;GPV=1;SPV=0.020856;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:21,9:15,5 +chr13 91093399 . CT C 0 PASS DP=41;GPV=1;SPV=0.020447;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:10,8:5,4 +chr13 91432209 . G C 0 PASS DP=64;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:13,10:8,5:5,5 +chr13 93649934 . G A 0 PASS DP=108;GPV=1;SPV=3.0999e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:41,19:17,9:24,10 +chr13 95126885 . A ATATATT 0 PASS DP=79;GPV=1;SPV=0.013635;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,11:24,5:12,6 +chr13 96348818 . G A 0 PASS DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:14,5:25,6 +chr13 96589619 . G A 0 PASS DP=88;GPV=1;SPV=0.00069515;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:25,9:17,6 +chr13 96754757 . T A 0 PASS DP=87;GPV=1;SPV=0.017808;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,2:17,3 +chr13 96943450 . CT C 0 PASS DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr13 97105084 . TA T 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,3:1,2 +chr13 98391600 . T G 0 PASS DP=91;GPV=1;SPV=0.0012787;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:17,4:22,6 +chr13 100232351 . C CGTGTGTGTGTGTGT 0 PASS DP=63;GPV=1;SPV=0.12943;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:21,3:11,1 +chr13 100232357 . T C 0 PASS DP=75;GPV=1;SPV=0.029506;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:16,5:19,4 +chr13 101332397 . C CAA 0 PASS DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:11,5:1,3 +chr13 102974309 . C G 0 PASS DP=88;GPV=1;SPV=0.021263;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,6:17,1:24,5 +chr13 103047630 . C T 0 PASS DP=67;GPV=1;SPV=0.003331;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:12,5:19,6 +chr13 105065149 . A G 0 PASS DP=70;GPV=1;SPV=0.028679;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:14,4:13,5 +chr13 105467729 . C CT 0 PASS DP=52;GPV=1;SPV=0.0027647;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,15:12,12:6,3 +chr13 106216651 . G C 0 PASS DP=61;GPV=1;SPV=0.045253;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:19,7:4,1 +chr13 106867015 . CAA C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr13 107565384 . C CAAA 0 PASS DP=60;GPV=1;SPV=0.01458;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:12,10:5,7:7,3 +chr13 107668673 . C T 0 PASS DP=84;GPV=1;SPV=0.0059563;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:20,3:15,4 +chr13 108046191 . C T 0 PASS DP=95;GPV=1;SPV=2.9162e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:17,9:16,4 +chr13 108543460 . C G 0 PASS DP=86;GPV=1;SPV=0.0050209;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:22,5:13,2 +chr13 108761545 . C A 0 PASS DP=99;GPV=1;SPV=1.7586e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:17,13:13,6 +chr13 109336084 . G C 0 PASS DP=94;GPV=1;SPV=0.00019321;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:20,6:17,6 +chr13 110219664 . A G 0 PASS DP=55;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,5:11,1:9,4 +chr13 110506255 . CCA C 0 PASS DP=73;GPV=1;SPV=0.056634;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:21,2:16,3 +chr13 111281181 . CTT C 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:6,3:4,3 +chr13 111859149 . G A 0 PASS DP=66;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,4:6,1:10,3 +chr13 112383157 . G GA 0 PASS DP=42;GPV=1;SPV=0.08744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:15,2:4,2 +chr13 112863429 . C A 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2 +chr13 112961104 . T C 0 PASS DP=85;GPV=1;SPV=0.021818;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:34,12:11,6:23,6 +chr13 113055459 . T C 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,4:3,2 +chr14 18270100 . A G 0 PASS DP=87;GPV=1;SPV=0.040969;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:16,2:19,6 +chr14 18379672 . G T 0 PASS DP=54;GPV=1;SPV=0.021229;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:22,8:0,1 +chr14 18520206 . G A 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr14 18938656 . T G 0 PASS DP=41;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:0,0:19,4 +chr14 18952842 . C A 0 PASS DP=94;GPV=1;SPV=0.047824;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:44,10:23,9:21,1 +chr14 18999953 . T C 0 PASS DP=32;GPV=1;SPV=0.16643;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,2:7,2 +chr14 19013983 . C T 0 PASS DP=23;GPV=1;SPV=0.016999;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,4:1,2 +chr14 19014505 . G C 0 PASS DP=113;GPV=1;SPV=0.036063;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,7:37,5:14,2 +chr14 19014583 . A T 0 PASS DP=101;GPV=1;SPV=0.04103;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:25,5:12,7 +chr14 19212342 . G C 0 PASS DP=182;GPV=1;SPV=0.036428;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:77,19:33,13:44,6 +chr14 19237864 . C T 0 PASS DP=41;GPV=1;SPV=0.20218;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr14 19276115 . G A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr14 19289034 . T A 0 PASS DP=135;GPV=1;SPV=0.012161;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:54,19:17,5:37,14 +chr14 19291750 . C T 0 PASS DP=207;GPV=1;SPV=0.0064441;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:72,22:41,16:31,6 +chr14 19293378 . A G 0 PASS DP=28;GPV=1;SPV=0.038406;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,3:1,3 +chr14 19318253 . T C 0 PASS DP=99;GPV=1;SPV=0.030482;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:19,4:23,11 +chr14 19335869 . T TG 0 PASS DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:2,4:23,7 +chr14 19351441 . C T 0 PASS DP=160;GPV=1;SPV=0.0042191;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:67,17:29,10:38,7 +chr14 19377333 . T TA 0 PASS DP=237;GPV=1;SPV=0.01768;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:118,14:69,2:49,12 +chr14 19377338 . C T 0 PASS DP=224;GPV=1;SPV=0.012506;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:111,15:63,2:48,13 +chr14 19449258 . G C 0 PASS DP=52;GPV=1;SPV=0.064826;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:0,0:23,4 +chr14 19488364 . G A 0 PASS DP=287;GPV=1;SPV=0.03486;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:141,25:74,16:67,9 +chr14 19506468 . C CTTT 0 PASS DP=45;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:11,3:9,1 +chr14 19507331 . C A 0 PASS DP=81;GPV=1;SPV=0.0067016;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:6,6:31,2 +chr14 19642736 . G A 0 PASS DP=101;GPV=1;SPV=0.04729;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:12,3:24,8 +chr14 19645109 . TA T 0 PASS DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,3:20,1 +chr14 19685723 . C T 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:25,4:0,0 +chr14 19686710 . T G 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:16,2:2,2 +chr14 19891409 . T TTTC 0 PASS DP=74;GPV=1;SPV=0.049892;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,5:27,3:9,2 +chr14 19900360 . C A 0 PASS DP=171;GPV=1;SPV=1.3363e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:85,22:39,9:46,13 +chr14 20179034 . CGT C 0 PASS DP=52;GPV=1;SPV=0.1713;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,3:14,1 +chr14 23002451 . C CA 0 PASS DP=58;GPV=1;SPV=0.016015;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,13:18,10:2,3 +chr14 23234622 . T C 0 PASS DP=105;GPV=1;SPV=0.00010394;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:22,7:20,6 +chr14 25124162 . C CAA 0 PASS DP=66;GPV=1;SPV=0.0096904;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,9:18,8:4,1 +chr14 25745394 . A AG 0 PASS DP=88;GPV=1;SPV=0.0029353;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:17,3:22,6 +chr14 26345632 . C T 0 PASS DP=100;GPV=1;SPV=0.00018429;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:15,6:20,4 +chr14 26732225 . T TTTC 0 PASS DP=60;GPV=1;SPV=0.010741;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,7:4,2:13,5 +chr14 27841292 . C A 0 PASS DP=53;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:6,2:4,1:2,1 +chr14 27873697 . G GT 0 PASS DP=37;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,7:9,6:5,1 +chr14 30724072 . T TA 0 PASS DP=42;GPV=1;SPV=0.039561;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:13,3:8,7 +chr14 33517594 . T G 0 PASS DP=97;GPV=1;SPV=0.0007833;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:23,4:21,8 +chr14 34159596 . A T 0 PASS DP=25;GPV=1;SPV=0.0036508;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,6:1,2:0,4 +chr14 34709787 . C CAAAA 0 PASS DP=58;GPV=1;SPV=0.028662;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,10:15,8:4,2 +chr14 34735162 . C CACAG 0 PASS DP=82;GPV=1;SPV=0.047026;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,1:16,3 +chr14 36468370 . A T 0 PASS DP=91;GPV=1;SPV=0.0010064;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:21,6:19,5 +chr14 37186587 . TA T 0 PASS DP=40;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,8:6,7:3,1 +chr14 37348983 . CT C 0 PASS DP=42;GPV=1;SPV=0.013587;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,8:12,6:2,2 +chr14 37351986 . A G 0 PASS DP=39;GPV=1;SPV=0.0069797;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,16:2,4:10,12 +chr14 38100237 . A AT 0 PASS DP=40;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:13,1:8,3 +chr14 38603160 . A AAGAGAG 0 PASS DP=36;GPV=1;SPV=0.16749;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,3:11,2:3,1 +chr14 40192069 . C A 0 PASS DP=88;GPV=1;SPV=0.00067686;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:21,4:20,10 +chr14 45045543 . GTATATATATATATA G 0 PASS DP=50;GPV=1;SPV=0.027862;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3 +chr14 45045559 . A G 0 PASS DP=45;GPV=1;SPV=0.027541;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,2:9,3 +chr14 45306696 . C G 0 PASS DP=117;GPV=1;SPV=4.8407e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:48,20:28,14:20,6 +chr14 46149252 . G T 0 PASS DP=97;GPV=1;SPV=0.023395;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:54,8:24,3:30,5 +chr14 50016709 . CTTTT C 0 PASS DP=35;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,7:2,1 +chr14 52197581 . A C 0 PASS DP=115;GPV=1;SPV=0.00026888;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:27,9:24,4 +chr14 52402875 . T A 0 PASS DP=96;GPV=1;SPV=0.00054005;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:25,6:15,5 +chr14 52697647 . T C 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,1:10,3 +chr14 54131908 . G A 0 PASS DP=79;GPV=1;SPV=0.0018745;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:16,6:14,2 +chr14 54267301 . G A 0 PASS DP=99;GPV=1;SPV=0.0012111;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:20,9:27,3 +chr14 55445592 . GAAAAA G 0 PASS DP=35;GPV=1;SPV=0.034759;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1 +chr14 56596794 . A T 0 PASS DP=66;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,4:17,3:18,1 +chr14 56669459 . C G 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,1:11,3 +chr14 56875540 . T G 0 PASS DP=51;GPV=1;SPV=0.013266;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:10,4:6,1 +chr14 56922104 . CACATAT C 0 PASS DP=67;GPV=1;SPV=0.046164;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:15,3:11,5 +chr14 57880034 . GAGGAAGGAAGGAAGGA G 0 PASS DP=55;GPV=1;SPV=0.032;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,7:11,6:6,1 +chr14 60741658 . G GTTTT 0 PASS DP=55;GPV=1;SPV=0.0089005;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,8:11,5:12,3 +chr14 60898142 . C T 0 PASS DP=90;GPV=1;SPV=0.044529;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:21,8:6,1:15,7 +chr14 61002392 . A G 0 PASS DP=100;GPV=1;SPV=4.8132e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:38,19:14,9:24,10 +chr14 63003516 . T A 0 PASS DP=45;GPV=1;SPV=0.11664;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:7,1:18,4 +chr14 63126362 . G A 0 PASS DP=75;GPV=1;SPV=6.4158e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:16,8:10,5 +chr14 63959287 . CTTT C 0 PASS DP=35;GPV=1;SPV=0.24868;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,4:12,1 +chr14 64253610 . A G 0 PASS DP=66;GPV=1;SPV=0.005945;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,4:15,1 +chr14 64380668 . CT C 0 PASS DP=25;GPV=1;SPV=0.011899;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,6:3,3 +chr14 64869619 . A T 0 PASS DP=67;GPV=1;SPV=0.024141;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:19,3:9,5 +chr14 66921444 . G GT 0 PASS DP=71;GPV=1;SPV=0.00091899;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,11:16,8:12,3 +chr14 67466994 . CA C 0 PASS DP=31;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,7:5,6:0,1 +chr14 67643852 . TAA T 0 PASS DP=45;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,7:8,4:6,3 +chr14 69397452 . G GAAA 0 PASS DP=70;GPV=1;SPV=0.022951;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:18,7:7,5 +chr14 69842784 . G A 0 PASS DP=73;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,4:18,3:8,1 +chr14 70654587 . CAAAAAAAAAAAAAAAAA C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,7:4,2 +chr14 73440263 . A G 0 PASS DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,1:16,3 +chr14 73689026 . GTT G 0 PASS DP=59;GPV=1;SPV=0.026706;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,9:13,5:4,4 +chr14 73772839 . TG T 0 PASS DP=56;GPV=1;SPV=0.034091;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,11:10,6:13,5 +chr14 74092315 . GT G 0 PASS DP=70;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:18,4:11,2:7,2 +chr14 74320563 . CTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,3:7,2 +chr14 74340528 . C T 0 PASS DP=106;GPV=1;SPV=0.00016256;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:19,6:18,4 +chr14 76503172 . TC T 0 PASS DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:20,2:8,2 +chr14 77513016 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:3,2:12,2 +chr14 77905633 . C T 0 PASS DP=81;GPV=1;SPV=0.0001383;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:16,11:15,2 +chr14 79790615 . C CT 0 PASS DP=40;GPV=1;SPV=0.14936;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:18,4:5,1 +chr14 80184516 . TA T 0 PASS DP=66;GPV=1;SPV=0.0012479;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:19,5:10,8 +chr14 81303059 . G T 0 PASS DP=85;GPV=1;SPV=0.033219;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,11:20,8:13,3 +chr14 81966199 . CA C 0 PASS DP=61;GPV=1;SPV=0.0084152;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,9:19,7:9,2 +chr14 82862874 . ATTTTTTT A 0 PASS DP=49;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,6:12,4:3,2 +chr14 83590209 . A C 0 PASS DP=64;GPV=1;SPV=0.030468;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:16,8:14,2 +chr14 85917277 . T C 0 PASS DP=62;GPV=1;SPV=0.040784;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:13,3:16,6 +chr14 86279901 . C A 0 PASS DP=96;GPV=1;SPV=1.2862e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:31,13:17,8:14,5 +chr14 86287051 . AGGAAG A 0 PASS DP=33;GPV=1;SPV=0.034547;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:6,5:8,2 +chr14 89613116 . CAAAAA C 0 PASS DP=46;GPV=1;SPV=0.011012;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:6,5:2,2 +chr14 91108526 . T TGTGAGAGAGAGAGAGA 0 PASS DP=21;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:1,2:3,3 +chr14 92448345 . T TACACACACACACACACACAC 0 PASS DP=52;GPV=1;SPV=0.089356;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,7:12,6:6,1 +chr14 92911791 . G C 0 PASS DP=122;GPV=1;SPV=0.02785;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:57,8:37,2:20,6 +chr14 94088499 . C CTT 0 PASS DP=50;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,7:8,3 +chr14 94815455 . C T 0 PASS DP=104;GPV=1;SPV=1.056e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:43,20:29,8:14,12 +chr14 96340130 . T G 0 PASS DP=43;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,4:5,3:10,1 +chr14 96340131 . C A 0 PASS DP=39;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:4,3:9,1 +chr14 96621139 . TC T 0 PASS DP=74;GPV=1;SPV=0.0057212;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:20,2:12,6 +chr14 97376058 . G T 0 PASS DP=89;GPV=1;SPV=0.0021438;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:18,6:20,3 +chr14 98401101 . G GAGAAAGAA 0 PASS DP=22;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:3,3:2,1 +chr14 99903784 . C CTT 0 PASS DP=60;GPV=1;SPV=0.01976;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:15,10:9,3 +chr14 99959377 . CCT C 0 PASS DP=71;GPV=1;SPV=0.01339;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,8:16,2:16,6 +chr14 99959385 . C CT 0 PASS DP=85;GPV=1;SPV=0.023261;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,6:23,2:16,4 +chr14 101089548 . C A 0 PASS DP=99;GPV=1;SPV=0.040631;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:32,6:21,1:11,5 +chr14 101607561 . T C 0 PASS DP=39;GPV=1;SPV=0.21337;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:2,0:21,4 +chr14 103908165 . C CAA 0 PASS DP=53;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,13:13,9:4,4 +chr14 104225631 . G A 0 PASS DP=73;GPV=1;SPV=0.047547;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,7:13,3:19,4 +chr14 105594814 . T C 0 PASS DP=133;GPV=1;SPV=0.029663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:59,17:43,13:16,4 +chr14 105665211 . GTT G 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:6,6:0,1 +chr14 105759956 . CT C 0 PASS DP=109;GPV=1;SPV=0.0052291;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:18,3:21,7 +chr15 17063205 . A T 0 PASS DP=70;GPV=1;SPV=0.0068563;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,3:17,6 +chr15 19872473 . C CTT 0 PASS DP=41;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1 +chr15 20001506 . TAGAG T 0 PASS DP=150;GPV=1;SPV=0.036939;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:71,12:52,7:19,5 +chr15 20053156 . G A 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:22,5:4,1 +chr15 20104346 . A C 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr15 20332701 . TAC T 0 PASS DP=195;GPV=1;SPV=0.009197;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:58,17:26,15:32,2 +chr15 20332717 . C G 0 PASS DP=194;GPV=1;SPV=0.032853;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:80,16:35,14:45,2 +chr15 20427539 . T G 0 PASS DP=67;GPV=1;SPV=0.059617;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:13,4:21,1 +chr15 20457729 . A T 0 PASS DP=96;GPV=1;SPV=0.048603;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:25,2:28,4 +chr15 20537493 . C A 0 PASS DP=130;GPV=1;SPV=0.0067746;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:58,13:37,7:21,6 +chr15 20573432 . G GT 0 PASS DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:0,0:36,4 +chr15 20640595 . G T 0 PASS DP=106;GPV=1;SPV=0.023456;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:20,2:26,8 +chr15 20651177 . G T 0 PASS DP=317;GPV=1;SPV=0.0032421;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:134,36:63,17:71,19 +chr15 20737194 . A G 0 PASS DP=31;GPV=1;SPV=0.018088;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:3,6:6,2 +chr15 20957725 . T C 0 PASS DP=50;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,3:15,2 +chr15 21053699 . G A 0 PASS DP=116;GPV=1;SPV=0.0058709;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:57,13:43,8:14,5 +chr15 21135521 . G A 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr15 21253620 . A G 0 PASS DP=192;GPV=1;SPV=0.033925;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:112,15:71,2:41,13 +chr15 21346492 . C CTCTT 0 PASS DP=160;GPV=1;SPV=0.0065235;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:69,17:18,3:51,14 +chr15 21549180 . T C 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:8,2:8,2 +chr15 21554146 . A T 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,1:11,4 +chr15 21554908 . TGAAG T 0 PASS DP=50;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1 +chr15 22440026 . C G 0 PASS DP=111;GPV=1;SPV=0.0068284;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:21,3:28,4 +chr15 23041097 . A G 0 PASS DP=40;GPV=1;SPV=0.20486;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:12,2:9,1 +chr15 23195795 . A T 0 PASS DP=149;GPV=1;SPV=0.028972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:66,16:46,6:20,10 +chr15 23363256 . C T 0 PASS DP=61;GPV=1;SPV=0.024221;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:17,5:11,1 +chr15 24262448 . T C 0 PASS DP=50;GPV=1;SPV=0.015035;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,5:4,2 +chr15 24353047 . G C 0 PASS DP=89;GPV=1;SPV=0.014016;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:15,1:24,5 +chr15 24395903 . C CATATATATACAT 0 PASS DP=32;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,3:3,1 +chr15 25170183 . T G 0 PASS DP=103;GPV=1;SPV=0.00011182;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:13,6:30,8 +chr15 25786617 . CTTTT C 0 PASS DP=30;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:8,3:5,3 +chr15 25845332 . G T 0 PASS DP=95;GPV=1;SPV=0.042088;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:20,3:19,5 +chr15 25854517 . G C 0 PASS DP=98;GPV=1;SPV=0.00020622;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:23,9:18,4 +chr15 26142377 . T TTC 0 PASS DP=55;GPV=1;SPV=0.049645;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,4:3,2:16,2 +chr15 27257538 . T A 0 PASS DP=108;GPV=1;SPV=0.00038112;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,12:14,8:10,4 +chr15 28151020 . T C 0 PASS DP=91;GPV=1;SPV=0.00012153;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:40,17:19,7:21,10 +chr15 28378480 . A G 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr15 28453922 . G C 0 PASS DP=118;GPV=1;SPV=0.0010594;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:43,19:23,7:20,12 +chr15 29534106 . CAA C 0 PASS DP=32;GPV=1;SPV=0.0055231;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:7,3:2,3 +chr15 30344256 . T A 0 PASS DP=102;GPV=1;SPV=0.027562;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:26,4:21,7 +chr15 31921025 . C T 0 PASS DP=105;GPV=1;SPV=7.9372e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:20,5:21,8 +chr15 32234382 . C A 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:22,4:0,0 +chr15 32306060 . A G 0 PASS DP=68;GPV=1;SPV=0.033079;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:16,6:14,2 +chr15 32329566 . C T 0 PASS DP=65;GPV=1;SPV=0.0086319;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:17,3:8,11 +chr15 32813042 . T C 0 PASS DP=111;GPV=1;SPV=0.0097526;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:29,3:30,6 +chr15 33419056 . G T 0 PASS DP=79;GPV=1;SPV=0.033251;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:20,2:16,3 +chr15 34062554 . C A 0 PASS DP=53;GPV=1;SPV=0.0063215;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,7:10,1:5,6 +chr15 34310771 . T A 0 PASS DP=42;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,2:3,1:1,1 +chr15 35074963 . G A 0 PASS DP=95;GPV=1;SPV=0.00081325;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:22,6:17,4 +chr15 35733612 . T C 0 PASS DP=110;GPV=1;SPV=7.5848e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:24,8:17,4 +chr15 35971475 . A G 0 PASS DP=64;GPV=1;SPV=0.036822;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:8,4:24,2 +chr15 36991779 . TTTTC T 0 PASS DP=46;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:10,3:6,4 +chr15 38681355 . C CTCT 0 PASS DP=66;GPV=1;SPV=0.0065499;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,12:8,3:15,9 +chr15 38846873 . A AT 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chr15 38903984 . T G 0 PASS DP=41;GPV=1;SPV=0.029588;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,11:7,9:5,2 +chr15 38965037 . G T 0 PASS DP=99;GPV=1;SPV=0.29167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:4,3:3,1:1,2 +chr15 38989442 . CCTATGCTATGCTATGCTATGCTATGCTATGCTATGCTATG C 0 PASS DP=45;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,6:9,1 +chr15 43697631 . C T 0 PASS DP=96;GPV=1;SPV=0.00089389;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:28,7:16,5 +chr15 43964997 . A G 0 PASS DP=105;GPV=1;SPV=0.0017697;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:21,5:24,4 +chr15 44824992 . G A 0 PASS DP=97;GPV=1;SPV=0.0001703;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:24,5:14,7 +chr15 44875797 . C G 0 PASS DP=108;GPV=1;SPV=1.4002e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:44,27:22,16:22,11 +chr15 45798088 . C CT 0 PASS DP=40;GPV=1;SPV=0.0033421;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:9,10:6,4 +chr15 46169548 . A ATT 0 PASS DP=58;GPV=1;SPV=0.036581;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,11:17,9:5,2 +chr15 46954340 . C T 0 PASS DP=94;GPV=1;SPV=0.0049996;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:27,4:18,5 +chr15 47384814 . GTTTTTTTTTT G 0 PASS DP=28;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,3:4,1 +chr15 47657719 . CTTTTTTTTTTTTTTT C 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,3:6,1 +chr15 50393532 . A ATATATATGTG 0 PASS DP=76;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:3,2:1,1:2,1 +chr15 50585050 . A ATT 0 PASS DP=40;GPV=1;SPV=0.025116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,11:9,9:8,2 +chr15 50629859 . C CT 0 PASS DP=45;GPV=1;SPV=0.0048312;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:5,5:5,4 +chr15 50644797 . C CA 0 PASS DP=56;GPV=1;SPV=0.069354;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,5:16,4:8,1 +chr15 51194251 . CTT C 0 PASS DP=61;GPV=1;SPV=0.049052;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:8,3:20,5 +chr15 51353714 . TA T 0 PASS DP=64;GPV=1;SPV=0.15343;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,3:12,1 +chr15 53495192 . G T 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,1:3,3 +chr15 54249209 . C T 0 PASS DP=75;GPV=1;SPV=0.0059483;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:20,6:18,5 +chr15 54687307 . A G 0 PASS DP=62;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:33:0,5:0,3:0,2 +chr15 55210213 . A ATG 0 PASS DP=59;GPV=1;SPV=0.0019705;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,12:12,9:8,3 +chr15 60065017 . C CT 0 PASS DP=31;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,7:4,1 +chr15 63466031 . G A 0 PASS DP=41;GPV=1;SPV=0.047817;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:6,3:10,5 +chr15 64277781 . ATATAT A 0 PASS DP=109;GPV=1;SPV=0.038165;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:19,3:21,7 +chr15 64715925 . TAC T 0 PASS DP=58;GPV=1;SPV=0.089726;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:25,4:10,3 +chr15 66551345 . C CA 0 PASS DP=52;GPV=1;SPV=0.0036895;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,10:7,9:4,1 +chr15 66616079 . C T 0 PASS DP=112;GPV=1;SPV=0.00015443;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:19,8:33,8 +chr15 67353366 . T A 0 PASS DP=84;GPV=1;SPV=0.007321;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,8:27,5:11,3 +chr15 68269598 . CAA C 0 PASS DP=39;GPV=1;SPV=0.01391;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:5,6:6,1 +chr15 69534230 . A ATTT 0 PASS DP=47;GPV=1;SPV=0.01494;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,8:5,4:7,4 +chr15 72163112 . G A 0 PASS DP=96;GPV=1;SPV=0.00072854;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:21,6:18,4 +chr15 72725059 . G T 0 PASS DP=64;GPV=1;SPV=0.043517;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:18,2:15,4 +chr15 73238271 . GTTTTTTT G 0 PASS DP=35;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,4:4,3 +chr15 73661242 . AAAAG A 0 PASS DP=42;GPV=1;SPV=0.012052;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:7,9:8,2 +chr15 73898880 . A AAAAAAAAAAT 0 PASS DP=19;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,5:3,4:0,1 +chr15 74939066 . C CAAAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.037623;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,7:3,6:3,1 +chr15 75432685 . C CA 0 PASS DP=61;GPV=1;SPV=0.017254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,12:13,10:9,2 +chr15 75503490 . G A 0 PASS DP=80;GPV=1;SPV=0.050822;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:16,3:24,2 +chr15 75503628 . G A 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,2:16,2 +chr15 75830581 . C CA 0 PASS DP=107;GPV=1;SPV=6.1657e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:49,19:23,9:26,10 +chr15 77408156 . C T 0 PASS DP=85;GPV=1;SPV=0.021295;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:24,10:10,6:14,4 +chr15 77992856 . C CCCACT 0 PASS DP=20;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:0,0:5,2 +chr15 80089259 . G GTT 0 PASS DP=54;GPV=1;SPV=0.02247;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,8:8,7:9,1 +chr15 81258773 . C A 0 PASS DP=84;GPV=1;SPV=0.00081654;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:16,4:21,8 +chr15 82337538 . A G 0 PASS DP=77;GPV=1;SPV=0.0096214;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,2:17,9 +chr15 82341038 . G T 0 PASS DP=116;GPV=1;SPV=0.024526;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:11,7:32,6 +chr15 82524026 . A G 0 PASS DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,2:2,2 +chr15 83340285 . C T 0 PASS DP=83;GPV=1;SPV=0.065677;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:18,3:26,2 +chr15 83384284 . A G 0 PASS DP=48;GPV=1;SPV=0.1625;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:10,1:19,4 +chr15 83450759 . C CTT 0 PASS DP=17;GPV=1;SPV=0.2381;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,3:0,1:3,2 +chr15 84520959 . A C 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,1:14,3 +chr15 84700593 . CAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr15 84777696 . T C 0 PASS DP=53;GPV=1;SPV=0.0011108;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:13,8:7,3 +chr15 84796237 . AAAATATATATATATATATATATATATATTTTATATATATAT A 0 PASS DP=17;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:2,6:2,5:0,1 +chr15 84885731 . C CAA 0 PASS DP=54;GPV=1;SPV=0.0082261;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,6:10,5:7,1 +chr15 85245352 . C T 0 PASS DP=41;GPV=1;SPV=0.020407;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:1,2:11,4 +chr15 85270641 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr15 86104945 . C A 0 PASS DP=87;GPV=1;SPV=6.3166e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:18,11:15,3 +chr15 87417776 . G A 0 PASS DP=94;GPV=1;SPV=0.03701;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:19,8:19,5 +chr15 88540969 . A G 0 PASS DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:20,1:11,3 +chr15 88552759 . T C 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,2:10,2 +chr15 88966789 . G T 0 PASS DP=83;GPV=1;SPV=0.038586;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:22,2:17,6 +chr15 90129213 . A G 0 PASS DP=73;GPV=1;SPV=0.014644;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,4:13,8 +chr15 90173939 . A ATTTT 0 PASS DP=70;GPV=1;SPV=0.017079;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:13,7:15,5 +chr15 90328484 . C CTTT 0 PASS DP=49;GPV=1;SPV=0.0085654;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:16,8:6,3 +chr15 90331980 . AGG A 0 PASS DP=68;GPV=1;SPV=0.033614;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,2:15,3 +chr15 90331984 . A G 0 PASS DP=74;GPV=1;SPV=0.024272;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,2:18,4 +chr15 90331991 . AAG A 0 PASS DP=75;GPV=1;SPV=0.064197;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,4:21,1:12,3 +chr15 90392748 . C CTTTTT 0 PASS DP=32;GPV=1;SPV=0.1088;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:11,3:4,2 +chr15 91196879 . G A 0 PASS DP=110;GPV=1;SPV=5.473e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:42,13:29,6:13,7 +chr15 93131667 . T TA 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,1:20,3 +chr15 94162147 . G A 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,3:17,1 +chr15 94868218 . C CT 0 PASS DP=57;GPV=1;SPV=0.026312;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,9:12,2 +chr15 95581318 . C T 0 PASS DP=80;GPV=1;SPV=0.0012733;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:18,7:17,4 +chr15 95948056 . C T 0 PASS DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:18,8:13,4 +chr15 96357729 . A T 0 PASS DP=69;GPV=1;SPV=0.071891;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:6,2:30,3 +chr15 96470894 . C T 0 PASS DP=107;GPV=1;SPV=0.006601;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:54,9:29,5:25,4 +chr15 96707509 . G T 0 PASS DP=106;GPV=1;SPV=0.0027396;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:23,4:25,5 +chr15 100377498 . AT A 0 PASS DP=63;GPV=1;SPV=0.033697;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,5:15,2 +chr15 101920402 . G A 0 PASS DP=116;GPV=1;SPV=0.0086553;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:24,6:20,11 +chr15 101928520 . G A 0 PASS DP=98;GPV=1;SPV=0.034006;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:21,4:25,7 +chr16 579814 . T A 0 PASS DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,1:4,3 +chr16 1011197 . C G 0 PASS DP=24;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:2,1:4,1 +chr16 1466923 . CAA C 0 PASS DP=54;GPV=1;SPV=0.011302;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,9:13,8:7,1 +chr16 1593399 . C T 0 PASS DP=90;GPV=1;SPV=0.0016018;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:16,8:27,4 +chr16 2343751 . A G 0 PASS DP=58;GPV=1;SPV=0.1436;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:16,2:19,3 +chr16 2441937 . T TTATA 0 PASS DP=24;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:4,5:1,1 +chr16 3657602 . T C 0 PASS DP=118;GPV=1;SPV=6.3106e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:33,9:19,7 +chr16 4621368 . A T 0 PASS DP=96;GPV=1;SPV=0.049419;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:28,4:13,2 +chr16 5183258 . C T 0 PASS DP=130;GPV=1;SPV=8.6019e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:58,15:28,8:30,7 +chr16 5827911 . A T 0 PASS DP=58;GPV=1;SPV=0.018191;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:4,1:21,5 +chr16 5895759 . G A 0 PASS DP=85;GPV=1;SPV=9.8817e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:12,10:20,3 +chr16 6170796 . C T 0 PASS DP=71;GPV=1;SPV=0.00014469;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,6:11,6 +chr16 6442611 . C T 0 PASS DP=104;GPV=1;SPV=0.00025381;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:24,10:19,2 +chr16 6487690 . AAAAAAAAAAAATATATAT A 0 PASS DP=20;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:4,1:0,1 +chr16 6694859 . A G 0 PASS DP=104;GPV=1;SPV=3.4067e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:14,5:27,10 +chr16 6955677 . TTAGGTATGTATG T 0 PASS DP=79;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,5:12,1:18,4 +chr16 7165410 . G A 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,2:11,2 +chr16 7810991 . T TATGTGTGTGG 0 PASS DP=51;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,6:7,4 +chr16 8382337 . G T 0 PASS DP=92;GPV=1;SPV=0.0073566;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,4:17,2 +chr16 8660816 . A G 0 PASS DP=26;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:8,5:0,2 +chr16 8999575 . CTTAT C 0 PASS DP=88;GPV=1;SPV=0.0060651;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:17,9:18,8 +chr16 9292581 . A G 0 PASS DP=100;GPV=1;SPV=0.049919;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:14,3:29,3 +chr16 9437492 . G A 0 PASS DP=90;GPV=1;SPV=0.00071257;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:18,5:18,5 +chr16 9597697 . CA C 0 PASS DP=36;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,6:4,1 +chr16 9970635 . T TA 0 PASS DP=90;GPV=1;SPV=0.0051091;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:24,7:24,5 +chr16 10268417 . C T 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr16 10568780 . C CTT 0 PASS DP=34;GPV=1;SPV=0.017079;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:6,5:2,1 +chr16 12243985 . G C 0 PASS DP=104;GPV=1;SPV=0.00014785;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:46,15:30,8:16,7 +chr16 13216133 . G T 0 PASS DP=85;GPV=1;SPV=0.00026114;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:19,8:16,5 +chr16 13746557 . CT C 0 PASS DP=101;GPV=1;SPV=0.00025924;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:45,14:24,9:21,5 +chr16 14785942 . T A 0 PASS DP=83;GPV=1;SPV=0.04208;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:18,2:22,3 +chr16 15308471 . G C 0 PASS DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,5:12,1 +chr16 16470372 . T TCTTCCTTCCTTC 0 PASS DP=115;GPV=1;SPV=0.013337;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:46,14:11,2:35,12 +chr16 16701811 . C CT 0 PASS DP=70;GPV=1;SPV=0.034293;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:19,1:16,5 +chr16 16717740 . T C 0 PASS DP=19;GPV=1;SPV=0.057792;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr16 16959714 . TTTTTTTTAATTTAAAAAAAC T 0 PASS DP=63;GPV=1;SPV=0.018681;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:7,5:15,4 +chr16 17603381 . AT A 0 PASS DP=40;GPV=1;SPV=0.014137;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,3:5,3 +chr16 18151399 . A C 0 PASS DP=70;GPV=1;SPV=0.041183;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,8:11,6:9,2 +chr16 18238291 . C T 0 PASS DP=81;GPV=1;SPV=0.030078;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:25,8:12,4 +chr16 18246717 . A G 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,1:7,4 +chr16 21026700 . C CA 0 PASS DP=50;GPV=1;SPV=0.011322;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:9,8:8,1 +chr16 21155621 . CA C 0 PASS DP=52;GPV=1;SPV=0.0029033;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,10:5,8:5,2 +chr16 21177619 . C CT 0 PASS DP=46;GPV=1;SPV=0.008557;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:12,11:2,1 +chr16 21613168 . CTTTTTTTTTTTTTTTT C 0 PASS DP=29;GPV=1;SPV=0.00028986;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,14:2,11:3,3 +chr16 22173903 . G GTATATATATA 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:7,1:16,3 +chr16 22627936 . CAA C 0 PASS DP=112;GPV=1;SPV=0.043079;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:45,12:29,6:16,6 +chr16 23207170 . C T 0 PASS DP=106;GPV=1;SPV=3.4959e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:38,17:23,13:15,4 +chr16 23374573 . C CA 0 PASS DP=49;GPV=1;SPV=0.043779;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,5:4,2 +chr16 23902732 . C CCCTCCCTCCCTCCCTCCCTT 0 PASS DP=27;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:0,0:10,4 +chr16 24432837 . T C 0 PASS DP=67;GPV=1;SPV=0.029998;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:20,3:9,5 +chr16 24579241 . G GTTTTTT 0 PASS DP=54;GPV=1;SPV=0.015771;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:13,9:5,2 +chr16 24588697 . T C 0 PASS DP=70;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,4:13,1:3,3 +chr16 24627697 . CT C 0 PASS DP=38;GPV=1;SPV=0.02835;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,6:9,3 +chr16 25059861 . C CT 0 PASS DP=50;GPV=1;SPV=0.01597;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,5:8,6 +chr16 26177870 . CTT C 0 PASS DP=41;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:6,5:6,2 +chr16 26766064 . AGAT A 0 PASS DP=93;GPV=1;SPV=0.023442;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:23,3:11,3 +chr16 26770730 . T TTAGA 0 PASS DP=56;GPV=1;SPV=0.01641;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:19,3:3,3 +chr16 26958789 . ATATATTTT A 0 PASS DP=63;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:13,11:8,4:5,7 +chr16 27265161 . C CTTTTT 0 PASS DP=18;GPV=1;SPV=0.062937;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,5:2,2:2,3 +chr16 28464022 . A G 0 PASS DP=63;GPV=1;SPV=0.10662;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:29,2:7,3 +chr16 28662310 . G A 0 PASS DP=43;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,2:14,4 +chr16 28810791 . T C 0 PASS DP=119;GPV=1;SPV=0.025834;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:57,15:16,10:41,5 +chr16 29504437 . G A 0 PASS DP=47;GPV=1;SPV=0.041011;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1 +chr16 29504509 . AAT A 0 PASS DP=81;GPV=1;SPV=0.025941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,7:15,1:17,6 +chr16 30499712 . T C 0 PASS DP=34;GPV=1;SPV=0.020174;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,5:7,1 +chr16 30499730 . TA T 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr16 31104840 . G A 0 PASS DP=184;GPV=1;SPV=0.019899;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:79,15:38,11:41,4 +chr16 31220456 . G GT 0 PASS DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:3,3:6,1 +chr16 31989663 . T C 0 PASS DP=63;GPV=1;SPV=0.028667;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:13,1:17,5 +chr16 32083617 . C A 0 PASS DP=233;GPV=1;SPV=0.040993;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:110,19:43,3:67,16 +chr16 32143910 . A G 0 PASS DP=180;GPV=1;SPV=0.0078097;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:92,19:48,17:44,2 +chr16 32288934 . A C 0 PASS DP=128;GPV=1;SPV=0.013189;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:36,6:32,2 +chr16 32300620 . T TTAAAA 0 PASS DP=66;GPV=1;SPV=0.048123;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,6:20,5:10,1 +chr16 32383739 . G A 0 PASS DP=108;GPV=1;SPV=0.04495;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:54,8:29,3:25,5 +chr16 32441647 . C A 0 PASS DP=213;GPV=1;SPV=0.020195;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:88,19:45,4:43,15 +chr16 32441648 . CTT C 0 PASS DP=213;GPV=1;SPV=0.045156;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:42,3:45,13 +chr16 32545620 . T TAA 0 PASS DP=124;GPV=1;SPV=0.023547;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:64,22:31,18:33,4 +chr16 32802161 . T C 0 PASS DP=23;GPV=1;SPV=0.15415;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr16 32812264 . G A 0 PASS DP=114;GPV=1;SPV=0.018772;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:31,5:23,1 +chr16 32862141 . C T 0 PASS DP=60;GPV=1;SPV=0.069027;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:16,3:15,2 +chr16 32982841 . A G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:14,4:1,1 +chr16 33018909 . G C 0 PASS DP=86;GPV=1;SPV=0.039534;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:20,10:23,4 +chr16 33057658 . T A 0 PASS DP=96;GPV=1;SPV=0.039144;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:15,1:36,5 +chr16 33777396 . TTG T 0 PASS DP=98;GPV=1;SPV=0.03143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:14,9:28,3 +chr16 34258608 . A T 0 PASS DP=89;GPV=1;SPV=0.0016161;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:24,7:15,3 +chr16 35857796 . A T 0 PASS DP=98;GPV=1;SPV=4.8866e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:11,5:25,8 +chr16 35905106 . A T 0 PASS DP=83;GPV=1;SPV=0.00014322;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,3:12,8 +chr16 37737580 . G A 0 PASS DP=140;GPV=1;SPV=0.020107;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:11,4:49,10 +chr16 46386931 . T C 0 PASS DP=13529;GPV=1;SPV=0.014552;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7486:6666,807:4068,379:2598,428 +chr16 46391132 . T C 0 PASS DP=15299;GPV=1;SPV=0.0021004;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7644:6746,838:2104,221:4642,617 +chr16 46446274 . T G 0 PASS DP=469;GPV=1;SPV=0.037765;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:261:225,36:106,15:119,21 +chr16 47074889 . C CA 0 PASS DP=61;GPV=1;SPV=0.003791;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,9:14,8:8,1 +chr16 48482430 . C CT 0 PASS DP=55;GPV=1;SPV=0.044124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,5:6,3 +chr16 51719029 . CAA C 0 PASS DP=52;GPV=1;SPV=0.004738;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,10:7,9:9,1 +chr16 52992519 . AAG A 0 PASS DP=57;GPV=1;SPV=0.038102;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,5:17,3:5,2 +chr16 53742793 . C T 0 PASS DP=91;GPV=1;SPV=0.00022082;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:21,4:15,8 +chr16 55078551 . G GA 0 PASS DP=79;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:42:1,3:0,0:1,3 +chr16 56277776 . TACACACACACACACACACACAC T 0 PASS DP=46;GPV=1;SPV=0.0019985;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:4,7:2,1 +chr16 56596519 . AG A 0 PASS DP=61;GPV=1;SPV=0.11061;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:11,2:24,3 +chr16 56825205 . CT C 0 PASS DP=28;GPV=1;SPV=0.034921;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr16 56930231 . G T 0 PASS DP=92;GPV=1;SPV=0.038859;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:23,5:18,2 +chr16 57006413 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.011174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,4:5,2 +chr16 57327670 . CAAAAAAAAAAAAAAAA C 0 PASS DP=29;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,5:3,1 +chr16 57414410 . CTT C 0 PASS DP=41;GPV=1;SPV=0.023692;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,11:9,8:2,3 +chr16 58675346 . G GA 0 PASS DP=57;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:13,9:5,1 +chr16 60011342 . C CA 0 PASS DP=51;GPV=1;SPV=0.020403;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:15,15:6,4 +chr16 60527880 . T C 0 PASS DP=82;GPV=1;SPV=0.042807;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:13,4:14,2 +chr16 61167057 . C T 0 PASS DP=86;GPV=1;SPV=0.00020665;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:17,11:19,3 +chr16 61466756 . G T 0 PASS DP=80;GPV=1;SPV=7.3327e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:10,6:13,7 +chr16 61634118 . GT G 0 PASS DP=99;GPV=1;SPV=0.044109;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:28,5:16,4 +chr16 61812854 . C T 0 PASS DP=79;GPV=1;SPV=0.0013605;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:20,5:16,7 +chr16 62057788 . G A 0 PASS DP=94;GPV=1;SPV=0.0014811;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:22,5:23,7 +chr16 62126380 . G GTA 0 PASS DP=50;GPV=1;SPV=0.074336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,5:14,1:8,4 +chr16 62946969 . T C 0 PASS DP=101;GPV=1;SPV=0.00013409;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:21,7:23,8 +chr16 63084008 . G T 0 PASS DP=77;GPV=1;SPV=0.0037159;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:19,6:17,4 +chr16 63084012 . G T 0 PASS DP=73;GPV=1;SPV=0.049892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,4:18,1 +chr16 63509414 . G T 0 PASS DP=83;GPV=1;SPV=0.0042232;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:22,3:18,7 +chr16 64257783 . A C 0 PASS DP=91;GPV=1;SPV=0.00057799;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:27,6:14,7 +chr16 64560021 . TTC T 0 PASS DP=59;GPV=1;SPV=0.060214;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,2:12,2 +chr16 65012026 . A G 0 PASS DP=111;GPV=1;SPV=1.8341e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:20,9:24,7 +chr16 65463338 . G A 0 PASS DP=100;GPV=1;SPV=5.3308e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:15,7:20,9 +chr16 65893148 . AT A 0 PASS DP=74;GPV=1;SPV=0.042684;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:12,4:17,4 +chr16 66861190 . AAAG A 0 PASS DP=82;GPV=1;SPV=0.0051799;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:18,11:11,3 +chr16 68010049 . TTTCC T 0 PASS DP=70;GPV=1;SPV=0.017879;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:6,6:20,7 +chr16 68753212 . C CAA 0 PASS DP=57;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,7:11,5:6,2 +chr16 68928298 . A ATTT 0 PASS DP=44;GPV=1;SPV=0.047286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:6,3:10,3 +chr16 68980437 . T A 0 PASS DP=31;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,11:5,6:4,5 +chr16 70039712 . C T 0 PASS DP=121;GPV=1;SPV=0.0007532;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:57,12:30,6:27,6 +chr16 70052158 . C CGG 0 PASS DP=59;GPV=1;SPV=0.020186;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:16,9:4,1 +chr16 70825625 . G C 0 PASS DP=53;GPV=1;SPV=0.020691;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:12,1:11,5 +chr16 70941764 . T C 0 PASS DP=101;GPV=1;SPV=0.032479;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:19,4:24,5 +chr16 71134600 . G C 0 PASS DP=113;GPV=1;SPV=0.016085;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:33,1:24,6 +chr16 71148368 . A G 0 PASS DP=108;GPV=1;SPV=0.004694;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:29,7:20,1 +chr16 71163030 . T C 0 PASS DP=105;GPV=1;SPV=0.030587;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:30,1:28,6 +chr16 72545153 . C T 0 PASS DP=97;GPV=1;SPV=4.6265e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:19,12:13,8 +chr16 74082162 . GTT G 0 PASS DP=50;GPV=1;SPV=0.028182;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:19,3:7,6 +chr16 74494403 . CT C 0 PASS DP=27;GPV=1;SPV=0.026316;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,7:3,5:2,2 +chr16 75873770 . G A 0 PASS DP=99;GPV=1;SPV=8.0875e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:11,8:20,14 +chr16 76098933 . C CA 0 PASS DP=41;GPV=1;SPV=0.14279;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,5:8,4:8,1 +chr16 76937902 . C CT 0 PASS DP=55;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr16 77469657 . G A 0 PASS DP=98;GPV=1;SPV=0.0019982;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:23,3:16,5 +chr16 78002391 . G C 0 PASS DP=62;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,5:11,1:12,4 +chr16 79289867 . T TTTTTTTTTTTTTC 0 PASS DP=56;GPV=1;SPV=0.041497;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,8:9,3:6,5 +chr16 80010206 . A G 0 PASS DP=70;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:7,4:5,3:2,1 +chr16 80142912 . C T 0 PASS DP=113;GPV=1;SPV=0.0055347;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:29,5:14,1 +chr16 83659785 . CT C 0 PASS DP=48;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,12:5,7:3,5 +chr16 84697711 . T G 0 PASS DP=30;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:2,6:5,1 +chr16 85855426 . CATAT C 0 PASS DP=46;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,5:12,4:4,1 +chr16 86791022 . C A 0 PASS DP=121;GPV=1;SPV=0.00039387;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:56,13:28,8:28,5 +chr16 87174641 . TTTGTTTTTTTTTTG T 0 PASS DP=31;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:4,2:4,2 +chr16 87193365 . TAC T 0 PASS DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,8:1,7:2,1 +chr16 87928756 . CTTTGTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.006865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,3:3,3 +chr16 88371972 . C CCAT 0 PASS DP=60;GPV=1;SPV=0.17398;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,4:13,2:21,2 +chr16 88545320 . G GT 0 PASS DP=112;GPV=1;SPV=0.00024453;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:49,13:25,7:24,6 +chr16 88862588 . C G 0 PASS DP=80;GPV=1;SPV=0.039374;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:13,6:14,2 +chr16 88988070 . C CTT 0 PASS DP=73;GPV=1;SPV=0.032244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:2,4:27,5 +chr16 89215991 . G C 0 PASS DP=119;GPV=1;SPV=8.7205e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:43,19:22,11:21,8 +chr16 89411921 . G C 0 PASS DP=63;GPV=1;SPV=0.024173;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:6,4:20,1 +chr16 89536520 . C CAGGTGAGGCAGGTG 0 PASS DP=63;GPV=1;SPV=0.053676;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,6:16,4:14,2 +chr16 89634091 . C CTTTTTT 0 PASS DP=21;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,4:0,3:3,1 +chr16 89688077 . CT C 0 PASS DP=38;GPV=1;SPV=0.018492;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,4:1,1 +chr16 89812652 . A C 0 PASS DP=62;GPV=1;SPV=0.037909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,5:16,2 +chr17 244209 . C T 0 PASS DP=60;GPV=1;SPV=0.046149;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:18,4:6,3 +chr17 314822 . T C 0 PASS DP=213;GPV=1;SPV=0.038495;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:91,18:50,8:41,10 +chr17 402995 . C G 0 PASS DP=30;GPV=1;SPV=0.1088;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:4,1:11,4 +chr17 415383 . TTG T 0 PASS DP=48;GPV=1;SPV=0.16171;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:8,3:19,1 +chr17 672169 . A C 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,1:5,3 +chr17 942611 . C A 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr17 1256435 . GT G 0 PASS DP=45;GPV=1;SPV=0.049619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:13,4:5,3 +chr17 2356376 . G C 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr17 2730521 . T TTGTG 0 PASS DP=59;GPV=1;SPV=0.011346;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:10,9:6,1 +chr17 2772859 . T C 0 PASS DP=64;GPV=1;SPV=0.021388;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,3:13,4 +chr17 3320546 . A G 0 PASS DP=51;GPV=1;SPV=0.046548;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,4:11,1 +chr17 3635245 . G GGAAGGAA 0 PASS DP=47;GPV=1;SPV=0.043286;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:16,3:0,1 +chr17 3641384 . A T 0 PASS DP=29;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,3:2,2:1,1 +chr17 6941618 . T TCTCACTCTCA 0 PASS DP=31;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:5,1:12,3 +chr17 7073723 . CA C 0 PASS DP=55;GPV=1;SPV=0.020195;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,10:13,8:5,2 +chr17 7274080 . CAA C 0 PASS DP=44;GPV=1;SPV=0.031608;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,7:10,5:5,2 +chr17 7277976 . C CT 0 PASS DP=40;GPV=1;SPV=0.011316;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,9:8,8:4,1 +chr17 7378264 . AGAG A 0 PASS DP=36;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:3,4:10,1 +chr17 8363861 . ATT A 0 PASS DP=58;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,4:3,1:14,3 +chr17 10881914 . GACAA G 0 PASS DP=75;GPV=1;SPV=0.038125;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,3:17,2 +chr17 11509020 . C CCAGCTGATTATAAAAT 0 PASS DP=58;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:9,5:10,2 +chr17 11707959 . CCACACACACACACACA C 0 PASS DP=54;GPV=1;SPV=0.076205;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,4:16,3:7,1 +chr17 12452680 . T A 0 PASS DP=61;GPV=1;SPV=0.0019875;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,1:12,7 +chr17 12630428 . G C 0 PASS DP=84;GPV=1;SPV=0.0094429;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:16,2:18,4 +chr17 13082355 . ATG A 0 PASS DP=57;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,3:13,1 +chr17 13687794 . T C 0 PASS DP=90;GPV=1;SPV=0.0014365;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:19,4:20,6 +chr17 14186097 . G A 0 PASS DP=127;GPV=1;SPV=0.039231;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:51,11:27,9:24,2 +chr17 14346247 . C CTT 0 PASS DP=27;GPV=1;SPV=0.047386;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:1,3:2,1 +chr17 16161240 . C G 0 PASS DP=85;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,5:17,4:11,1 +chr17 18395786 . G A 0 PASS DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:1,2:16,7 +chr17 18926236 . A ATTAT 0 PASS DP=74;GPV=1;SPV=0.009672;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:9,1:11,6 +chr17 19700763 . CA C 0 PASS DP=51;GPV=1;SPV=0.0071869;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:10,7:4,2 +chr17 20099511 . C CA 0 PASS DP=62;GPV=1;SPV=0.015677;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,8:12,7:3,1 +chr17 20309815 . CTT C 0 PASS DP=36;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:5,2:7,6 +chr17 20554552 . C T 0 PASS DP=127;GPV=1;SPV=0.016944;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:26,12:22,2 +chr17 21347012 . T C 0 PASS DP=98;GPV=1;SPV=0.019345;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:24,6:15,1 +chr17 21429100 . C T 0 PASS DP=89;GPV=1;SPV=0.041253;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:20,3:23,2 +chr17 21618605 . C G 0 PASS DP=128;GPV=1;SPV=0.0017091;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:65,12:31,7:34,5 +chr17 21638255 . C CT 0 PASS DP=74;GPV=1;SPV=0.052808;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:15,1:22,4 +chr17 21745153 . G A 0 PASS DP=51;GPV=1;SPV=0.0079024;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:9,8:8,6 +chr17 21906166 . C G 0 PASS DP=88;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,4:19,2:16,2 +chr17 23165463 . A G 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr17 26522412 . T C 0 PASS DP=35;GPV=1;SPV=0.074026;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,2:3,2 +chr17 26578810 . C A 0 PASS DP=92;GPV=1;SPV=0.04645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:16,4:17,4 +chr17 26601793 . G T 0 PASS DP=43;GPV=1;SPV=0.059274;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,1:17,3 +chr17 26630320 . A C 0 PASS DP=47;GPV=1;SPV=0.10922;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:14,1:6,2 +chr17 26742711 . A G 0 PASS DP=228;GPV=1;SPV=0.0036329;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:80,26:33,18:47,8 +chr17 26743898 . G T 0 PASS DP=307;GPV=1;SPV=0.0407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:128,27:69,17:59,10 +chr17 26955510 . ATAT A 0 PASS DP=159;GPV=1;SPV=0.0079553;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:72,18:37,15:35,3 +chr17 28488776 . C T 0 PASS DP=108;GPV=1;SPV=0.00010626;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:47,15:34,7:13,8 +chr17 28894616 . CT C 0 PASS DP=39;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,4:8,3 +chr17 29691498 . T C 0 PASS DP=81;GPV=1;SPV=0.013018;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,8:21,4:19,4 +chr17 30466795 . T C 0 PASS DP=88;GPV=1;SPV=2.3687e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:13,8:19,7 +chr17 30846409 . T C 0 PASS DP=64;GPV=1;SPV=0.0054479;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,5:9,6 +chr17 32072443 . A AC 0 PASS DP=87;GPV=1;SPV=0.020415;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:15,7:14,2 +chr17 32653607 . CAA C 0 PASS DP=52;GPV=1;SPV=0.00076786;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:11,13:3,5 +chr17 33436853 . C T 0 PASS DP=24;GPV=1;SPV=0.17622;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,4:1,2:4,2 +chr17 35561745 . AAAAAAAAG A 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,6:4,4 +chr17 37260301 . T A 0 PASS DP=18;GPV=1;SPV=0.076923;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:3,2:1,1 +chr17 38202136 . G GATATATATATATAT 0 PASS DP=40;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:16,3:5,2 +chr17 38944848 . A ATGTGTGTGTGTGTGTGTG 0 PASS DP=43;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,8:8,7:4,1 +chr17 39170524 . C CT 0 PASS DP=37;GPV=1;SPV=0.023193;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,5:4,3 +chr17 39355855 . C CAA 0 PASS DP=51;GPV=1;SPV=0.012394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:13,5:4,1 +chr17 39498513 . G A 0 PASS DP=89;GPV=1;SPV=1.2992e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:15,9:18,8 +chr17 40679936 . T A 0 PASS DP=84;GPV=1;SPV=2.607e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:14,7:12,9 +chr17 41094456 . C T 0 PASS DP=92;GPV=1;SPV=0.0002133;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:27,3:11,10 +chr17 41151528 . C T 0 PASS DP=100;GPV=1;SPV=0.00017414;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:22,8:21,6 +chr17 41330198 . A T 0 PASS DP=61;GPV=1;SPV=0.13725;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,2:3,1:2,1 +chr17 41633660 . GGT G 0 PASS DP=86;GPV=1;SPV=0.039014;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,9:19,6:16,3 +chr17 42048377 . A C 0 PASS DP=69;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:5,2:3,1:2,1 +chr17 42356541 . T A 0 PASS DP=96;GPV=1;SPV=0.0010854;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:21,4:22,7 +chr17 44181155 . G GGGT 0 PASS DP=68;GPV=1;SPV=0.050247;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,2:8,2 +chr17 44640699 . TA T 0 PASS DP=94;GPV=1;SPV=0.30655;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:27,3:15,2:12,1 +chr17 44954088 . C A 0 PASS DP=122;GPV=1;SPV=0.00046201;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:32,8:23,4 +chr17 44985119 . T C 0 PASS DP=59;GPV=1;SPV=0.023036;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:15,2:11,8 +chr17 45603026 . C G 0 PASS DP=75;GPV=1;SPV=0.033857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:33,6:6,6 +chr17 45791854 . A T 0 PASS DP=87;GPV=1;SPV=0.020048;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:16,5:15,3 +chr17 46125081 . G A 0 PASS DP=24;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,2:6,2:0,0 +chr17 46213288 . T TTTG 0 PASS DP=179;GPV=1;SPV=0.026147;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:65,19:40,12:25,7 +chr17 46228676 . T TTTG 0 PASS DP=125;GPV=1;SPV=0.0079248;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:40,16:27,11:13,5 +chr17 46232324 . G C 0 PASS DP=114;GPV=1;SPV=0.015123;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:52,12:27,10:25,2 +chr17 46256885 . T TG 0 PASS DP=170;GPV=1;SPV=0.029088;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:63,16:30,13:33,3 +chr17 46688553 . C G 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:5,4:13,4 +chr17 47000064 . T A 0 PASS DP=46;GPV=1;SPV=0.078605;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:17,3:8,3 +chr17 47724490 . A T 0 PASS DP=92;GPV=1;SPV=0.0002844;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:18,5:21,8 +chr17 48224071 . G A 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:6,1:1,1 +chr17 48541816 . C T 0 PASS DP=52;GPV=1;SPV=0.013977;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:2,1:22,7 +chr17 49395490 . T TTTC 0 PASS DP=57;GPV=1;SPV=0.03973;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:6,2:13,5 +chr17 49504773 . T C 0 PASS DP=38;GPV=1;SPV=0.0029007;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,1:3,5 +chr17 51854780 . C T 0 PASS DP=116;GPV=1;SPV=0.00094598;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:28,5:25,6 +chr17 52712033 . G C 0 PASS DP=89;GPV=1;SPV=0.0234;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:21,11:18,4 +chr17 52783194 . T G 0 PASS DP=80;GPV=1;SPV=0.031171;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:20,2:20,4 +chr17 53021068 . G GT 0 PASS DP=99;GPV=1;SPV=0.00098386;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:49,14:33,7:16,7 +chr17 53627705 . ACAACT A 0 PASS DP=78;GPV=1;SPV=0.064931;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:27,3:14,2 +chr17 53855532 . C CA 0 PASS DP=71;GPV=1;SPV=0.0040897;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,5:13,3 +chr17 53909895 . G A 0 PASS DP=75;GPV=1;SPV=0.00047197;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:18,5:11,6 +chr17 54139013 . ATT A 0 PASS DP=39;GPV=1;SPV=0.022502;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,4:9,3 +chr17 55506816 . G A 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,2:3,1 +chr17 59219059 . ATTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.27897;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:5,1:10,2 +chr17 59673100 . T G 0 PASS DP=83;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:50:1,3:0,2:1,1 +chr17 63742930 . CA C 0 PASS DP=35;GPV=1;SPV=0.051469;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,5:9,2 +chr17 64082704 . T C 0 PASS DP=93;GPV=1;SPV=1.4092e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:20,6:10,7 +chr17 65147587 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.057853;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,7:12,5:10,2 +chr17 65460125 . C T 0 PASS DP=87;GPV=1;SPV=8.9175e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:22,9:12,5 +chr17 65838091 . T TA 0 PASS DP=95;GPV=1;SPV=0.0054114;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:15,3:31,6 +chr17 65870065 . G GA 0 PASS DP=58;GPV=1;SPV=0.038888;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,8:20,6:2,2 +chr17 66482098 . CA C 0 PASS DP=50;GPV=1;SPV=0.0030632;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:7,11:4,9:3,2 +chr17 66746154 . CTT C 0 PASS DP=35;GPV=1;SPV=0.082922;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,3:6,3 +chr17 67089668 . T TATATATAGAGAGAGAG 0 PASS DP=48;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,4:6,2:7,2 +chr17 67309496 . C T 0 PASS DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:14,6:17,11 +chr17 67767795 . A AT 0 PASS DP=55;GPV=1;SPV=0.057887;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3 +chr17 67894880 . T C 0 PASS DP=99;GPV=1;SPV=1.7841e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:19,8:14,9 +chr17 69197027 . A G 0 PASS DP=64;GPV=1;SPV=0.098288;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:23,4:13,1 +chr17 71295236 . CTTTTTTTT C 0 PASS DP=28;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:8,6:3,1 +chr17 72147114 . A AAGG 0 PASS DP=50;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,5:16,4:5,1 +chr17 72504634 . CA C 0 PASS DP=37;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,6:8,2 +chr17 72754041 . TATATACACATAC T 0 PASS DP=60;GPV=1;SPV=0.0054956;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:10,3:5,7 +chr17 73026187 . G GAGAGAAGAGAAGAGA 0 PASS DP=61;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,9:4,8:9,1 +chr17 73224840 . C G 0 PASS DP=85;GPV=1;SPV=0.059053;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:30,3:18,3 +chr17 73855711 . C T 0 PASS DP=105;GPV=1;SPV=5.5727e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:41,19:19,8:22,11 +chr17 74423357 . TTG T 0 PASS DP=83;GPV=1;SPV=0.0065856;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,7:5,3:14,4 +chr17 74423362 . G T 0 PASS DP=88;GPV=1;SPV=0.0051054;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,7:7,3:14,4 +chr17 74791357 . G A 0 PASS DP=86;GPV=1;SPV=0.038854;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:21,1:15,8 +chr17 75269548 . CTTTTTT C 0 PASS DP=34;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:14,4:3,2 +chr17 75560802 . T TA 0 PASS DP=40;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:10,2:2,4 +chr17 76031286 . A ATTT 0 PASS DP=26;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:3,1:1,1 +chr17 76297870 . GTTTTTTT G 0 PASS DP=39;GPV=1;SPV=0.0024201;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:11,8:2,2 +chr17 77638792 . T G 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,2:0,2 +chr17 77665949 . T TCATG 0 PASS DP=104;GPV=1;SPV=0.045096;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:32,2:12,4 +chr17 77905259 . T A 0 PASS DP=111;GPV=1;SPV=0.00010709;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:47,14:28,4:19,10 +chr17 78635453 . C CA 0 PASS DP=54;GPV=1;SPV=0.019428;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,11:16,8:3,3 +chr17 79283954 . G A 0 PASS DP=96;GPV=1;SPV=0.0040253;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:21,7:15,12 +chr17 79656702 . AAGGAAG A 0 PASS DP=28;GPV=1;SPV=0.30769;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,2:3,1:3,1 +chr17 80148544 . CT C 0 PASS DP=46;GPV=1;SPV=0.057896;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,6:10,5:8,1 +chr17 80915773 . A T 0 PASS DP=49;GPV=1;SPV=0.019011;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,5:8,3 +chr17 81048476 . G A 0 PASS DP=101;GPV=1;SPV=0.0010149;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:22,5:21,5 +chr17 81339604 . A G 0 PASS DP=96;GPV=1;SPV=0.12238;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:4,6:3,2:1,4 +chr17 82746093 . C CA 0 PASS DP=49;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,9:12,8:4,1 +chr17 82856751 . C G 0 PASS DP=47;GPV=1;SPV=0.094974;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:9,1:10,2 +chr17 83032028 . AC A 0 PASS DP=110;GPV=1;SPV=0.039321;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:54,8:24,5:30,3 +chr18 147641 . CA C 0 PASS DP=42;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:7,8:7,2 +chr18 696206 . T C 0 PASS DP=53;GPV=1;SPV=0.040316;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,4:2,2:3,2 +chr18 731966 . C CA 0 PASS DP=44;GPV=1;SPV=0.032417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:8,7:4,1 +chr18 2986548 . A G 0 PASS DP=74;GPV=1;SPV=0.039801;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:12,6:20,1 +chr18 3926773 . GAGCACCTAT G 0 PASS DP=91;GPV=1;SPV=0.00040227;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:23,10:19,5 +chr18 3927940 . C T 0 PASS DP=111;GPV=1;SPV=0.00037832;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:14,6:29,4 +chr18 4306464 . A T 0 PASS DP=60;GPV=1;SPV=0.17449;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,5:8,4:13,1 +chr18 4510780 . T TGTG 0 PASS DP=74;GPV=1;SPV=0.073744;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,4:13,2:15,2 +chr18 4510905 . G GA 0 PASS DP=198;GPV=1;SPV=0.0034365;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:85,11:41,2:44,9 +chr18 4524842 . G A 0 PASS DP=112;GPV=1;SPV=6.0755e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:51,18:28,12:23,6 +chr18 6432242 . T TGCGCGC 0 PASS DP=94;GPV=1;SPV=0.027616;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,8:21,5:16,3 +chr18 8472568 . G GAAGAAAGAAAGA 0 PASS DP=60;GPV=1;SPV=0.033806;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:10,6:9,3 +chr18 9641349 . T TAGAA 0 PASS DP=72;GPV=1;SPV=0.034112;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,6:11,4:16,2 +chr18 11644947 . T C 0 PASS DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:6,6:9,3 +chr18 12022528 . A AAATATATATATATATATAT 0 PASS DP=22;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:4,1:0,3 +chr18 12874140 . C A 0 PASS DP=116;GPV=1;SPV=0.00020345;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:28,9:20,3 +chr18 14451784 . T A 0 PASS DP=63;GPV=1;SPV=0.048762;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:19,5:16,2 +chr18 15152436 . T A 0 PASS DP=88;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,4:8,2:14,2 +chr18 15406802 . A T 0 PASS DP=181;GPV=1;SPV=0.031533;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:92,11:57,6:35,5 +chr18 15471993 . G T 0 PASS DP=99;GPV=1;SPV=0.021795;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:5,1:37,9 +chr18 15484444 . G A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr18 15494057 . A T 0 PASS DP=64;GPV=1;SPV=0.064403;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:8,1:21,3 +chr18 15517248 . G T 0 PASS DP=358;GPV=1;SPV=0.022723;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:169,25:102,13:67,12 +chr18 15520846 . T C 0 PASS DP=218;GPV=1;SPV=0.0080062;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:93,26:25,7:68,19 +chr18 15528080 . T C 0 PASS DP=271;GPV=1;SPV=0.028874;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:115,21:34,14:81,7 +chr18 15534382 . G C 0 PASS DP=82;GPV=1;SPV=0.0042842;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:5,6:28,9 +chr18 15540233 . A G 0 PASS DP=61;GPV=1;SPV=0.023885;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:26,12:3,1 +chr18 15555357 . A G 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:2,1:14,5 +chr18 15573280 . C A 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr18 15580200 . G C 0 PASS DP=196;GPV=1;SPV=0.02679;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:93,17:26,3:67,14 +chr18 15582785 . G A 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:16,3:4,1 +chr18 15588637 . C A 0 PASS DP=64;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:2,1:29,4 +chr18 15684083 . G A 0 PASS DP=27;GPV=1;SPV=0.22085;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr18 15713707 . G C 0 PASS DP=386;GPV=1;SPV=0.012311;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:191,35:94,24:97,11 +chr18 15727235 . G C 0 PASS DP=121;GPV=1;SPV=0.022784;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:57,19:49,17:8,2 +chr18 15727935 . A T 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:1,0:16,4 +chr18 16442072 . T C 0 PASS DP=117;GPV=1;SPV=0.0061782;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:2,2:48,14 +chr18 16913119 . A C 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr18 16959666 . A G 0 PASS DP=56;GPV=1;SPV=0.048633;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:20,1:2,8 +chr18 17065706 . G T 0 PASS DP=473;GPV=1;SPV=0.022877;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:207,35:30,9:177,26 +chr18 17300370 . A T 0 PASS DP=63;GPV=1;SPV=0.0007759;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:22,12:4,1 +chr18 17638914 . G A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr18 17676479 . C A 0 PASS DP=154;GPV=1;SPV=0.046569;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:68,14:51,11:17,3 +chr18 17732441 . C T 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4 +chr18 18040886 . G T 0 PASS DP=122;GPV=1;SPV=0.01615;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:33,6:20,2 +chr18 18231134 . G A 0 PASS DP=111;GPV=1;SPV=0.019616;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:43,11:5,2 +chr18 19053810 . T A 0 PASS DP=79;GPV=1;SPV=0.013809;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:13,2:21,4 +chr18 19869150 . T A 0 PASS DP=107;GPV=1;SPV=0.049403;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:11,3:38,6 +chr18 20445267 . C A 0 PASS DP=24;GPV=1;SPV=0.03028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,3:3,2 +chr18 20582385 . T G 0 PASS DP=99;GPV=1;SPV=0.027025;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:26,7:14,4 +chr18 20786158 . C G 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:0,0:5,3 +chr18 20923340 . A G 0 PASS DP=27;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:0,0:13,4 +chr18 21640623 . CT C 0 PASS DP=37;GPV=1;SPV=0.041466;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:3,5:7,1 +chr18 21899266 . T G 0 PASS DP=53;GPV=1;SPV=0.045915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:10,7:11,3 +chr18 22079428 . G GT 0 PASS DP=102;GPV=1;SPV=0.0006601;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:24,6:22,6 +chr18 25960005 . C T 0 PASS DP=86;GPV=1;SPV=0.044045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:17,2:25,3 +chr18 27501014 . C A 0 PASS DP=96;GPV=1;SPV=0.017025;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:23,5:25,2 +chr18 27702207 . C T 0 PASS DP=98;GPV=1;SPV=1.3702e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:11,7:17,11 +chr18 28772839 . T G 0 PASS DP=86;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,4:6,2:8,2 +chr18 28873679 . G C 0 PASS DP=89;GPV=1;SPV=0.0013442;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:16,6:27,7 +chr18 29311057 . C CAAAA 0 PASS DP=52;GPV=1;SPV=0.062626;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,7:16,6:11,1 +chr18 30454417 . C T 0 PASS DP=109;GPV=1;SPV=0.011449;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:28,4:24,3 +chr18 31308385 . AT A 0 PASS DP=86;GPV=1;SPV=0.00020572;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:16,5:21,10 +chr18 33610413 . C G 0 PASS DP=80;GPV=1;SPV=0.018132;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,3:13,2 +chr18 35214060 . CT C 0 PASS DP=29;GPV=1;SPV=0.37564;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:8,2:4,2 +chr18 35445026 . G GGTGTGTGTGTGTGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,6:6,3:11,3 +chr18 36133897 . GTTTTTT G 0 PASS DP=42;GPV=1;SPV=0.090553;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,7:11,2:12,5 +chr18 37382878 . C T 0 PASS DP=99;GPV=1;SPV=5.077e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:15,8:18,7 +chr18 37727602 . G A 0 PASS DP=92;GPV=1;SPV=0.0061213;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:25,3:20,6 +chr18 38567748 . G C 0 PASS DP=99;GPV=1;SPV=0.00015275;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:23,5:19,9 +chr18 39706587 . T A 0 PASS DP=56;GPV=1;SPV=0.10577;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,5:4,3:2,2 +chr18 39863531 . GCACGCACACACACACA G 0 PASS DP=47;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,7:7,2 +chr18 40192263 . C G 0 PASS DP=36;GPV=1;SPV=0.0095308;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,1:3,5 +chr18 40241814 . T C 0 PASS DP=85;GPV=1;SPV=0.00012515;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:15,4:20,11 +chr18 42054126 . GTATATATATATATATATATATATATATATATATATATATATATATA G 0 PASS DP=30;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,6:7,3:4,3 +chr18 42278307 . C CAAA 0 PASS DP=64;GPV=1;SPV=0.010276;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,8:18,4:10,4 +chr18 42922557 . G A 0 PASS DP=85;GPV=1;SPV=0.00046557;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:19,9:19,5 +chr18 43745787 . A AATCT 0 PASS DP=74;GPV=1;SPV=0.0054715;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:17,15:7,7:10,8 +chr18 45346968 . AAAATAAAAATAAAAAT A 0 PASS DP=83;GPV=1;SPV=0.040632;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,12:16,3:17,9 +chr18 45615840 . A T 0 PASS DP=96;GPV=1;SPV=0.022208;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:30,4:23,4 +chr18 45830583 . C CTTTTT 0 PASS DP=36;GPV=1;SPV=0.047759;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:12,3:3,2 +chr18 46330410 . C T 0 PASS DP=111;GPV=1;SPV=1.8341e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:24,8:20,8 +chr18 47982777 . A AGAGAGG 0 PASS DP=16;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0 +chr18 48281933 . G C 0 PASS DP=80;GPV=1;SPV=0.0084605;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:13,5:18,11 +chr18 51977546 . C T 0 PASS DP=106;GPV=1;SPV=0.0019724;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:30,7:19,3 +chr18 53598647 . C T 0 PASS DP=91;GPV=1;SPV=8.1726e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:17,8:20,7 +chr18 54771591 . A AGT 0 PASS DP=49;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,9:5,5:5,4 +chr18 54980069 . A G 0 PASS DP=64;GPV=1;SPV=0.0098204;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,3:12,3 +chr18 55711294 . C CT 0 PASS DP=33;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:8,5:5,1 +chr18 56158489 . C T 0 PASS DP=101;GPV=1;SPV=0.00013409;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:18,8:26,7 +chr18 56736924 . A G 0 PASS DP=96;GPV=1;SPV=0.00018926;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:45,18:15,8:30,10 +chr18 56738798 . CT C 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:8,2:7,2 +chr18 56900082 . GTATA G 0 PASS DP=65;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:2,2:2,1:0,1 +chr18 59882954 . ATT A 0 PASS DP=100;GPV=1;SPV=0.049546;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:25,3:17,7 +chr18 61010065 . C A 0 PASS DP=91;GPV=1;SPV=1.5622e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:16,7:15,7 +chr18 62189275 . G GT 0 PASS DP=66;GPV=1;SPV=0.031485;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,11:11,5:15,6 +chr18 63174820 . CA C 0 PASS DP=54;GPV=1;SPV=0.049356;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:14,7:7,2 +chr18 65891839 . A G 0 PASS DP=94;GPV=1;SPV=0.0013864;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:20,7:23,4 +chr18 67394999 . CT C 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr18 72173274 . T G 0 PASS DP=94;GPV=1;SPV=5.8144e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:36,20:18,11:18,9 +chr18 72528962 . A G 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2 +chr18 72690942 . G A 0 PASS DP=114;GPV=1;SPV=3.0143e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:46,21:16,7:30,14 +chr18 73899710 . C A 0 PASS DP=92;GPV=1;SPV=3.4355e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:16,7:19,8 +chr18 74737392 . C T 0 PASS DP=94;GPV=1;SPV=0.00045086;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:21,5:15,5 +chr18 76028583 . G A 0 PASS DP=94;GPV=1;SPV=1.076e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:36,18:14,10:22,8 +chr18 76458795 . C T 0 PASS DP=49;GPV=1;SPV=0.0044583;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:5,8:11,2 +chr18 77708903 . G A 0 PASS DP=120;GPV=1;SPV=3.6562e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:47,25:23,10:24,15 +chr18 77958179 . C A 0 PASS DP=78;GPV=1;SPV=0.020648;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:21,1:11,4 +chr18 78042031 . GTT G 0 PASS DP=84;GPV=1;SPV=0.0007185;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,12:14,7:10,5 +chr18 78513404 . C T 0 PASS DP=46;GPV=1;SPV=0.12395;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:12,4:14,1 +chr18 78840321 . TGA T 0 PASS DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,6:3,2 +chr18 79618653 . A C 0 PASS DP=144;GPV=1;SPV=0.035863;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:70,13:31,9:39,4 +chr19 106852 . C T 0 PASS DP=41;GPV=1;SPV=0.052666;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:0,1:21,6 +chr19 160592 . G T 0 PASS DP=192;GPV=1;SPV=0.028659;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:91,12:41,6:50,6 +chr19 190040 . G A 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,1:4,3 +chr19 350618 . CAT C 0 PASS DP=48;GPV=1;SPV=0.012598;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:4,3:11,4 +chr19 481425 . AGAAGGATGATGGG A 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:12,2:4,2 +chr19 492581 . C CT 0 PASS DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,2:6,3 +chr19 714358 . C CT 0 PASS DP=30;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:5,3:10,2 +chr19 1035181 . G C 0 PASS DP=84;GPV=1;SPV=0.044401;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:26,4:15,1 +chr19 1877185 . C T 0 PASS DP=138;GPV=1;SPV=0.022449;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:21,6:25,6 +chr19 2725749 . C A 0 PASS DP=112;GPV=1;SPV=7.7806e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,15:32,11:16,4 +chr19 2864729 . GAAAGAAAAAGAAAA G 0 PASS DP=35;GPV=1;SPV=0.01828;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:3,1:7,7 +chr19 3528158 . C T 0 PASS DP=102;GPV=1;SPV=0.00073223;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:14,5:25,4 +chr19 3972314 . C CT 0 PASS DP=26;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:2,5:5,4 +chr19 4068661 . G T 0 PASS DP=99;GPV=1;SPV=0.046571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:52,6:29,4:23,2 +chr19 4232769 . A G 0 PASS DP=86;GPV=1;SPV=0.049454;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,10:18,6:15,4 +chr19 4334836 . C CTGTCCA 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,2:2,3 +chr19 4952393 . C CTT 0 PASS DP=39;GPV=1;SPV=0.11785;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,7:8,5:5,2 +chr19 5463442 . TTCC T 0 PASS DP=56;GPV=1;SPV=0.031089;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:13,1:11,4 +chr19 5516651 . T C 0 PASS DP=67;GPV=1;SPV=0.020315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,10:8,6:5,4 +chr19 6162566 . C CAAA 0 PASS DP=54;GPV=1;SPV=0.037576;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,9:18,8:9,1 +chr19 6287882 . T A 0 PASS DP=89;GPV=1;SPV=4.2775e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:18,10:14,9 +chr19 6455720 . T G 0 PASS DP=71;GPV=1;SPV=0.090909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:2,2:2,1:0,1 +chr19 6614552 . G GTTT 0 PASS DP=43;GPV=1;SPV=0.021122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,7:9,6:3,1 +chr19 6994039 . T TAAATAAATAAATAAATAAATAAATAAAC 0 PASS DP=83;GPV=1;SPV=0.0037845;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,11:13,6:11,5 +chr19 8063855 . G T 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:10,3:15,1 +chr19 8423985 . C CA 0 PASS DP=79;GPV=1;SPV=0.035556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:33,14:20,11:13,3 +chr19 8541425 . GT G 0 PASS DP=51;GPV=1;SPV=0.028446;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,8:7,2 +chr19 8785481 . G A 0 PASS DP=38;GPV=1;SPV=0.14395;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr19 8853515 . A C 0 PASS DP=81;GPV=1;SPV=0.049592;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:23,6:14,1 +chr19 8959981 . C T 0 PASS DP=94;GPV=1;SPV=0.015072;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:20,4:22,2 +chr19 9428062 . A C 0 PASS DP=92;GPV=1;SPV=0.00032403;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:21,7:15,4 +chr19 9970015 . T TG 0 PASS DP=42;GPV=1;SPV=0.0021563;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,11:3,4:6,7 +chr19 10196339 . C T 0 PASS DP=109;GPV=1;SPV=4.7992e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:30,4:13,10 +chr19 10307347 . T C 0 PASS DP=50;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,4:1,3:3,1 +chr19 11159637 . G A 0 PASS DP=93;GPV=1;SPV=0.05;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:54:0,3:0,2:0,1 +chr19 11974110 . TTTCTTTCTTTC T 0 PASS DP=70;GPV=1;SPV=0.016686;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:8,4:25,8 +chr19 13291633 . T TA 0 PASS DP=73;GPV=1;SPV=0.00011777;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,21:16,14:6,7 +chr19 16341517 . C T 0 PASS DP=99;GPV=1;SPV=9.1667e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:14,7:22,9 +chr19 18072946 . CAAAA C 0 PASS DP=50;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,8:7,1 +chr19 18159144 . C CTTTTTTTTTTT 0 PASS DP=28;GPV=1;SPV=0.016908;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:2,4:7,2 +chr19 18201263 . A AAAAGAAAG 0 PASS DP=75;GPV=1;SPV=0.023995;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,8:15,6:14,2 +chr19 19744153 . CTT C 0 PASS DP=66;GPV=1;SPV=0.10771;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:9,2:29,3 +chr19 20890454 . T A 0 PASS DP=65;GPV=1;SPV=0.046474;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:9,2:18,2 +chr19 21709169 . C CAA 0 PASS DP=64;GPV=1;SPV=0.0097243;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,12:14,8:8,4 +chr19 22655736 . G A 0 PASS DP=31;GPV=1;SPV=0.01458;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,3:3,6 +chr19 23417434 . GTATATA G 0 PASS DP=25;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:8,4:1,1 +chr19 24346300 . T C 0 PASS DP=138;GPV=1;SPV=0.017291;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:86,11:46,6:40,5 +chr19 25408284 . G T 0 PASS DP=34;GPV=1;SPV=0.13636;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:2,1:13,2 +chr19 26019887 . T G 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr19 27414078 . C T 0 PASS DP=86;GPV=1;SPV=0.0013497;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:20,6:20,6 +chr19 27437536 . T C 0 PASS DP=89;GPV=1;SPV=2.1314e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:18,5:17,13 +chr19 28819963 . G A 0 PASS DP=92;GPV=1;SPV=0.022285;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:26,2:18,4 +chr19 29548626 . C T 0 PASS DP=97;GPV=1;SPV=0.0007833;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:23,7:21,5 +chr19 29782829 . C CA 0 PASS DP=39;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:13,4:1,0 +chr19 29874253 . G C 0 PASS DP=55;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:1,2:1,2:0,0 +chr19 29900314 . A C 0 PASS DP=29;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,1:3,4 +chr19 32019290 . GAGAGAGAGAA G 0 PASS DP=45;GPV=1;SPV=0.046683;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:7,4:9,1 +chr19 32667832 . C CAAA 0 PASS DP=75;GPV=1;SPV=0.006922;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,15:18,11:15,4 +chr19 33961138 . C CTTT 0 PASS DP=56;GPV=1;SPV=0.0040779;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:11,4:11,6 +chr19 34451536 . GT G 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,4:6,2 +chr19 36428649 . A T 0 PASS DP=61;GPV=1;SPV=0.03385;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:22,4:5,1 +chr19 36975136 . A ATTTC 0 PASS DP=73;GPV=1;SPV=0.027342;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:11,4:20,7 +chr19 37184356 . AAAAGAAAGAAAG A 0 PASS DP=63;GPV=1;SPV=0.032887;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,7:12,3:12,4 +chr19 37283037 . G C 0 PASS DP=95;GPV=1;SPV=0.013084;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:20,3:21,9 +chr19 37551835 . G T 0 PASS DP=85;GPV=1;SPV=0.010281;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,5:18,1 +chr19 38422132 . G A 0 PASS DP=122;GPV=1;SPV=8.3659e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:58,18:30,8:28,10 +chr19 43765527 . G GAC 0 PASS DP=86;GPV=1;SPV=0.00034173;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:15,3:20,9 +chr19 44338836 . G A 0 PASS DP=107;GPV=1;SPV=0.00035589;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:30,10:21,5 +chr19 45372147 . T TGTGTGTGTGTGTGCGC 0 PASS DP=67;GPV=1;SPV=0.00033727;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,15:6,5:13,10 +chr19 45903858 . C CAA 0 PASS DP=66;GPV=1;SPV=0.019414;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,12:18,10:6,2 +chr19 46157787 . A C 0 PASS DP=86;GPV=1;SPV=0.00027053;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:17,6:11,3 +chr19 47051770 . G A 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:8,1:18,3 +chr19 47747779 . CTTT C 0 PASS DP=37;GPV=1;SPV=0.0084717;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3 +chr19 47895696 . C CTT 0 PASS DP=38;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,6:6,4:5,2 +chr19 48153637 . A AACAC 0 PASS DP=45;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:8,3:2,3 +chr19 48331200 . T C 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,2:8,3 +chr19 48829635 . C CTTT 0 PASS DP=37;GPV=1;SPV=0.11275;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:12,4:7,1 +chr19 48958345 . AT A 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:14,2:2,3 +chr19 49182467 . T C 0 PASS DP=57;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,4:13,2:6,2 +chr19 49544708 . CAG C 0 PASS DP=60;GPV=1;SPV=0.047358;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:10,2:14,7 +chr19 50346024 . AT A 0 PASS DP=68;GPV=1;SPV=0.101;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:12,3:23,1 +chr19 50618106 . T C 0 PASS DP=81;GPV=1;SPV=0.015393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:26,3:13,4 +chr19 50738867 . T C 0 PASS DP=52;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,4:6,1:16,3 +chr19 51393559 . T TTTTA 0 PASS DP=99;GPV=1;SPV=0.038138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:20,8:22,6 +chr19 52997685 . A G 0 PASS DP=83;GPV=1;SPV=8.2016e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:10,9:13,12 +chr19 53470160 . T TCCTTCCTTCCTTCCTTCC 0 PASS DP=57;GPV=1;SPV=0.028482;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,9:13,2:10,7 +chr19 53470177 . C CT 0 PASS DP=60;GPV=1;SPV=0.0069242;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:14,5:8,10 +chr19 53821031 . CTT C 0 PASS DP=38;GPV=1;SPV=0.1039;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,3:10,2:4,1 +chr19 53921585 . GT G 0 PASS DP=32;GPV=1;SPV=0.19536;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:6,2:10,1 +chr19 53923820 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5 +chr19 53954418 . A ATCTT 0 PASS DP=88;GPV=1;SPV=0.027602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,14:14,4:22,10 +chr19 54413375 . GGTGT G 0 PASS DP=61;GPV=1;SPV=0.00073139;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,13:12,9:6,4 +chr19 54492716 . C T 0 PASS DP=126;GPV=1;SPV=0.0087887;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:23,8:38,7 +chr19 54636053 . T C 0 PASS DP=69;GPV=1;SPV=0.014985;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:19,2:13,10 +chr19 54862802 . CT C 0 PASS DP=26;GPV=1;SPV=0.0068111;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,7:4,5:1,2 +chr19 55319433 . CTTTTTTT C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr19 55864705 . T C 0 PASS DP=103;GPV=1;SPV=0.0015871;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:14,4:26,4 +chr19 55990079 . CTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1 +chr19 56696976 . T TATATGTGTATAC 0 PASS DP=63;GPV=1;SPV=0.02769;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,8:11,6:6,2 +chr19 57165803 . C CA 0 PASS DP=60;GPV=1;SPV=0.02761;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,11:16,9:7,2 +chr19 57281556 . A AT 0 PASS DP=54;GPV=1;SPV=0.049356;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:15,4:6,5 +chr19 57457933 . A AGTGTGTGTGTGT 0 PASS DP=32;GPV=1;SPV=0.07564;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:4,3:9,1 +chr19 58232766 . A T 0 PASS DP=75;GPV=1;SPV=0.014077;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:11,6:3,3:8,3 +chr19 58390426 . CT C 0 PASS DP=19;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,3:2,1 +chr2 913213 . A G 0 PASS DP=52;GPV=1;SPV=0.24396;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:17,2:16,2 +chr2 923366 . A ATT 0 PASS DP=50;GPV=1;SPV=0.12934;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2 +chr2 1281225 . GTTTATGTGGTGTGGT G 0 PASS DP=64;GPV=1;SPV=0.043132;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,1:13,3 +chr2 1547975 . A C 0 PASS DP=54;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:1,2:0,0:1,2 +chr2 1719834 . TTGTG T 0 PASS DP=51;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:6,2:13,8 +chr2 3180664 . C T 0 PASS DP=31;GPV=1;SPV=0.040535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,4:8,4 +chr2 3669728 . C T 0 PASS DP=104;GPV=1;SPV=0.00016747;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:21,2:18,9 +chr2 4405526 . C CAA 0 PASS DP=50;GPV=1;SPV=0.044964;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,12:17,10:3,2 +chr2 4522520 . C T 0 PASS DP=82;GPV=1;SPV=5.7203e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:8,5:21,8 +chr2 5333727 . T C 0 PASS DP=96;GPV=1;SPV=0.0023465;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:22,5:20,4 +chr2 5600394 . G A 0 PASS DP=45;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,6:14,5:4,1 +chr2 6134131 . A G 0 PASS DP=87;GPV=1;SPV=0.0042725;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:22,9:22,2 +chr2 6862573 . T C 0 PASS DP=94;GPV=1;SPV=0.00044152;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:19,10:24,4 +chr2 9118194 . TTCTC T 0 PASS DP=36;GPV=1;SPV=0.0053523;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,4:7,4 +chr2 10554207 . C G 0 PASS DP=81;GPV=1;SPV=0.0082048;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:20,7:14,3 +chr2 10554273 . G GA 0 PASS DP=85;GPV=1;SPV=0.014217;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:16,9:20,3 +chr2 10690415 . C CAA 0 PASS DP=50;GPV=1;SPV=0.0064663;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:13,6:4,1 +chr2 10727051 . T C 0 PASS DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:0,1:17,8 +chr2 12199778 . CAA C 0 PASS DP=35;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:8,6:5,3 +chr2 13280936 . C T 0 PASS DP=98;GPV=1;SPV=0.0013781;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:47,12:22,4:25,8 +chr2 13484441 . ATGTGTGTGTG A 0 PASS DP=58;GPV=1;SPV=0.038795;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,8:9,6:11,2 +chr2 14757402 . A G 0 PASS DP=101;GPV=1;SPV=0.00053467;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:16,5:24,5 +chr2 15846446 . G A 0 PASS DP=110;GPV=1;SPV=5.5211e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:22,9:22,5 +chr2 16092284 . GT G 0 PASS DP=52;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,8:12,6:4,2 +chr2 16299765 . G A 0 PASS DP=74;GPV=1;SPV=0.13842;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:21,4:11,3:10,1 +chr2 17707999 . C T 0 PASS DP=80;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:17,5:10,2:7,3 +chr2 17921915 . G GTA 0 PASS DP=32;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:10,4:2,4 +chr2 18029352 . ATTT A 0 PASS DP=42;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:4,4:6,2 +chr2 18296634 . A AGT 0 PASS DP=155;GPV=1;SPV=0.015651;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:69,22:31,18:38,4 +chr2 18530290 . C CTT 0 PASS DP=28;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2 +chr2 19263268 . G A 0 PASS DP=110;GPV=1;SPV=1.2759e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:46,19:25,9:21,10 +chr2 22738315 . C T 0 PASS DP=93;GPV=1;SPV=0.0036201;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:25,6:20,4 +chr2 23581828 . C CAAAAAA 0 PASS DP=43;GPV=1;SPV=0.052666;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:15,6:6,1 +chr2 23918202 . C CA 0 PASS DP=51;GPV=1;SPV=0.014414;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:17,10:3,1 +chr2 24621432 . ATTTTTTTTT A 0 PASS DP=32;GPV=1;SPV=0.04422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:10,4:4,3 +chr2 25901727 . A T 0 PASS DP=34;GPV=1;SPV=0.030792;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:7,4:6,1 +chr2 26668091 . G A 0 PASS DP=93;GPV=1;SPV=0.00061273;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,6:20,5 +chr2 27539702 . A G 0 PASS DP=41;GPV=1;SPV=0.10694;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:6,1:11,2 +chr2 28258632 . G T 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,2:11,2 +chr2 28443199 . AT A 0 PASS DP=52;GPV=1;SPV=0.00094846;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,15:9,9:4,6 +chr2 28939057 . T G 0 PASS DP=36;GPV=1;SPV=0.11275;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,3:14,2 +chr2 30193879 . AT A 0 PASS DP=36;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,6:4,2 +chr2 30886989 . T C 0 PASS DP=104;GPV=1;SPV=0.003441;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:19,7:26,1 +chr2 31243452 . C T 0 PASS DP=39;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,4:8,2:2,2 +chr2 31245545 . ATATATATATT A 0 PASS DP=55;GPV=1;SPV=0.0055032;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:12,4:5,3 +chr2 31881495 . TA T 0 PASS DP=39;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:7,5:7,3 +chr2 32030629 . C CAA 0 PASS DP=83;GPV=1;SPV=0.015555;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,14:21,12:9,2 +chr2 32343478 . T TA 0 PASS DP=38;GPV=1;SPV=0.028534;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,6:7,2 +chr2 32446738 . G GT 0 PASS DP=30;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,3:8,1 +chr2 33654935 . GA G 0 PASS DP=73;GPV=1;SPV=0.0057212;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:19,3:13,5 +chr2 34123925 . A G 0 PASS DP=83;GPV=1;SPV=0.0012005;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:25,9:14,4 +chr2 34314362 . C CT 0 PASS DP=35;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2 +chr2 35214857 . A AT 0 PASS DP=94;GPV=1;SPV=0.046149;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:24,7:14,4:10,3 +chr2 35541650 . C G 0 PASS DP=60;GPV=1;SPV=0.022366;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,9:5,2:9,7 +chr2 35610856 . G A 0 PASS DP=103;GPV=1;SPV=0.0001474;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:22,7:22,7 +chr2 37519556 . AATATATATGT A 0 PASS DP=43;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2 +chr2 37519805 . G A 0 PASS DP=52;GPV=1;SPV=0.044512;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,4:12,2 +chr2 39978827 . CTA C 0 PASS DP=80;GPV=1;SPV=0.05702;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:32,2:9,3 +chr2 41452723 . CTT C 0 PASS DP=34;GPV=1;SPV=0.1184;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2 +chr2 42121772 . G GA 0 PASS DP=41;GPV=1;SPV=0.013378;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,6:6,3 +chr2 42403477 . G GTTT 0 PASS DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr2 42451204 . C CA 0 PASS DP=44;GPV=1;SPV=0.032622;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,8:12,7:4,1 +chr2 42525516 . T C 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:5,1:28,3 +chr2 42628772 . C T 0 PASS DP=58;GPV=1;SPV=0.026638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:19,5:6,4 +chr2 44588374 . G C 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:1,1:8,6 +chr2 44666612 . C CTTTTTTTTTTT 0 PASS DP=39;GPV=1;SPV=0.22913;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:15,3:5,1 +chr2 45064398 . G GT 0 PASS DP=74;GPV=1;SPV=0.0028422;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,6:14,8 +chr2 45716732 . AAAGT A 0 PASS DP=39;GPV=1;SPV=0.14853;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,6:16,5:2,1 +chr2 45868214 . CTT C 0 PASS DP=46;GPV=1;SPV=0.0013974;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,12:8,8:2,4 +chr2 46299246 . G GCGAAT 0 PASS DP=121;GPV=1;SPV=0.00018801;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:28,11:30,5 +chr2 46299254 . C G 0 PASS DP=122;GPV=1;SPV=0.00012803;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:27,10:30,6 +chr2 47259984 . G C 0 PASS DP=84;GPV=1;SPV=0.00010638;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,15:17,11:17,4 +chr2 49358589 . G A 0 PASS DP=97;GPV=1;SPV=0.0014915;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:19,1:18,7 +chr2 51939045 . G GT 0 PASS DP=20;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,7:1,4:1,3 +chr2 53439035 . G A 0 PASS DP=79;GPV=1;SPV=0.00029953;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,5:12,7 +chr2 54930953 . C CTT 0 PASS DP=44;GPV=1;SPV=0.092279;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,5:13,4:7,1 +chr2 55425116 . A AAG 0 PASS DP=88;GPV=1;SPV=7.7172e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:12,4:15,6 +chr2 57376462 . A G 0 PASS DP=86;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:9,5:3,3:6,2 +chr2 57912417 . A G 0 PASS DP=95;GPV=1;SPV=0.00010821;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:42,17:20,10:22,7 +chr2 60166802 . T C 0 PASS DP=92;GPV=1;SPV=0.00071811;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:20,5:17,5 +chr2 61054725 . ATG A 0 PASS DP=61;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,6:10,4 +chr2 61623897 . TAATAAAATAAAATAA T 0 PASS DP=68;GPV=1;SPV=0.016656;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:12,4:11,7 +chr2 61676192 . GT G 0 PASS DP=63;GPV=1;SPV=0.03601;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:15,4:8,4 +chr2 61715319 . C CTT 0 PASS DP=51;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:9,6:8,4 +chr2 62629617 . CTCTCCCTCTCCCCACGG C 0 PASS DP=48;GPV=1;SPV=0.12547;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:16,3:8,1 +chr2 63455439 . T C 0 PASS DP=76;GPV=1;SPV=0.052103;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:21,2:17,3 +chr2 65220216 . C CA 0 PASS DP=45;GPV=1;SPV=0.0065088;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,11:4,9:5,2 +chr2 65699924 . G C 0 PASS DP=103;GPV=1;SPV=0.00019326;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:45,14:27,9:18,5 +chr2 67945849 . C CTTT 0 PASS DP=35;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:7,4:7,2 +chr2 69662992 . C CT 0 PASS DP=33;GPV=1;SPV=0.0090729;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,7:4,1 +chr2 70219738 . C CT 0 PASS DP=45;GPV=1;SPV=0.017733;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:16,10:1,1 +chr2 70396496 . C CA 0 PASS DP=56;GPV=1;SPV=0.013912;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,10:13,9:8,1 +chr2 71161823 . G T 0 PASS DP=107;GPV=1;SPV=8.8589e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:40,22:20,11:20,11 +chr2 75186371 . C CA 0 PASS DP=50;GPV=1;SPV=0.043206;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,7:11,6:6,1 +chr2 76300327 . A G 0 PASS DP=48;GPV=1;SPV=0.048573;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,3:12,3 +chr2 77509384 . G T 0 PASS DP=99;GPV=1;SPV=0.00017939;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,16:19,9:26,7 +chr2 78858407 . C A 0 PASS DP=91;GPV=1;SPV=0.0015983;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:18,5:22,5 +chr2 79187261 . TTTTC T 0 PASS DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,3:12,3 +chr2 79283033 . T G 0 PASS DP=40;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:12,3:6,3 +chr2 79395157 . C T 0 PASS DP=116;GPV=1;SPV=4.2848e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:32,7:14,7 +chr2 79851737 . CTT C 0 PASS DP=34;GPV=1;SPV=0.05132;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,1:7,3 +chr2 79982253 . TACAC T 0 PASS DP=47;GPV=1;SPV=0.031354;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:4,2:11,7 +chr2 80375562 . C CTT 0 PASS DP=27;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:8,4:3,1 +chr2 80932071 . C CATAT 0 PASS DP=49;GPV=1;SPV=0.017571;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,4:5,5 +chr2 86902578 . A G 0 PASS DP=80;GPV=1;SPV=0.00064447;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:10,10:17,13 +chr2 87116473 . A T 0 PASS DP=62;GPV=1;SPV=0.015567;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:12,3:7,7 +chr2 87178306 . T TG 0 PASS DP=58;GPV=1;SPV=0.028693;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,10:9,4:16,6 +chr2 87201007 . T A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr2 87247722 . A G 0 PASS DP=111;GPV=1;SPV=0.012017;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:15,8:26,5 +chr2 87345906 . A T 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:4,2:21,2 +chr2 87388545 . C G 0 PASS DP=97;GPV=1;SPV=0.0030596;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:24,9:11,9 +chr2 87398126 . CGCCA C 0 PASS DP=75;GPV=1;SPV=0.079421;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:20,4:21,1 +chr2 87420984 . C G 0 PASS DP=20;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,2:4,2 +chr2 87706027 . T C 0 PASS DP=116;GPV=1;SPV=0.043168;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:52,14:30,9:22,5 +chr2 89534524 . G GTGAT 0 PASS DP=23;GPV=1;SPV=0.16149;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:10,3:1,0:9,3 +chr2 89597075 . A G 0 PASS DP=121;GPV=1;SPV=2.2566e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:45,23:28,10:17,13 +chr2 89767663 . GT G 0 PASS DP=92;GPV=1;SPV=0.040655;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:29,4:20,2 +chr2 89837671 . T A 0 PASS DP=143;GPV=1;SPV=0.021811;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:49,14:25,7:24,7 +chr2 90247912 . G A 0 PASS DP=149;GPV=1;SPV=0.0064228;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:58,19:32,12:26,7 +chr2 90249171 . C T 0 PASS DP=114;GPV=1;SPV=0.048023;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:35,6:15,7 +chr2 90311614 . T C 0 PASS DP=94;GPV=1;SPV=0.0018363;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,18:23,11:9,7 +chr2 90323215 . C G 0 PASS DP=110;GPV=1;SPV=0.038293;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:15,3:34,4 +chr2 90324502 . A G 0 PASS DP=24;GPV=1;SPV=0.013999;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:6,2:1,5 +chr2 90326314 . G A 0 PASS DP=31;GPV=1;SPV=0.043382;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr2 90350028 . A T 0 PASS DP=182;GPV=1;SPV=0.0092286;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:72,19:42,11:30,8 +chr2 90401619 . G A 0 PASS DP=171;GPV=1;SPV=0.019783;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:79,18:45,15:34,3 +chr2 91472627 . C T 0 PASS DP=246;GPV=1;SPV=0.0025124;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:136:113,22:54,12:59,10 +chr2 91476732 . T C 0 PASS DP=270;GPV=1;SPV=0.0036469;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:121,24:51,5:70,19 +chr2 91546596 . A G 0 PASS DP=173;GPV=1;SPV=0.00060653;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:71,21:36,7:35,14 +chr2 91601565 . C CTTTT 0 PASS DP=87;GPV=1;SPV=0.027931;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,10:13,5:20,5 +chr2 91711048 . G T 0 PASS DP=121;GPV=1;SPV=0.0012651;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:45,13:12,7:33,6 +chr2 91711082 . C T 0 PASS DP=137;GPV=1;SPV=0.048471;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:55,12:12,8:43,4 +chr2 91895156 . G GCT 0 PASS DP=239;GPV=1;SPV=0.023718;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:104,14:49,10:55,4 +chr2 91911069 . A C 0 PASS DP=186;GPV=1;SPV=0.0052731;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:84,10:35,8:49,2 +chr2 91932523 . T G 0 PASS DP=111;GPV=1;SPV=0.018291;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:30,3:27,4 +chr2 92198813 . G C 0 PASS DP=56;GPV=1;SPV=0.20884;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:30,4:3,0 +chr2 92204805 . C G 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:2,0:19,4 +chr2 92208558 . G A 0 PASS DP=53;GPV=1;SPV=0.20116;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,0:32,4 +chr2 92218555 . A G 0 PASS DP=74;GPV=1;SPV=0.079426;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:34,4:2,0 +chr2 92295228 . C T 0 PASS DP=24;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr2 92332611 . G C 0 PASS DP=91;GPV=1;SPV=0.023569;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:54,10:28,2:26,8 +chr2 92366760 . T G 0 PASS DP=276;GPV=1;SPV=0.023461;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:132,23:2,9:130,14 +chr2 92386741 . T A 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:10,3:10,1 +chr2 92392766 . C T 0 PASS DP=192;GPV=1;SPV=0.0050942;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:88,25:40,15:48,10 +chr2 92418824 . G C 0 PASS DP=44;GPV=1;SPV=0.078276;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr2 92485165 . C A 0 PASS DP=60;GPV=1;SPV=0.12943;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:3,0:29,4 +chr2 92491173 . T G 0 PASS DP=135;GPV=1;SPV=0.026545;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:68,9:42,6:26,3 +chr2 92511077 . A T 0 PASS DP=58;GPV=1;SPV=0.022365;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:9,6:19,1 +chr2 92564394 . T A 0 PASS DP=244;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:137:113,20:61,5:52,15 +chr2 92674209 . T A 0 PASS DP=135;GPV=1;SPV=0.044237;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:76,10:62,5:14,5 +chr2 92684703 . T A 0 PASS DP=70;GPV=1;SPV=0.080505;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:2,0:32,4 +chr2 92746667 . G A 0 PASS DP=77;GPV=1;SPV=0.026152;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:12,5:28,2 +chr2 92746668 . C T 0 PASS DP=77;GPV=1;SPV=0.049115;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,6:11,5:30,1 +chr2 92763497 . G A 0 PASS DP=48;GPV=1;SPV=0.011977;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:19,11:4,1 +chr2 92828797 . T A 0 PASS DP=287;GPV=1;SPV=0.0079688;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:153,18:1,1:152,17 +chr2 92856348 . C T 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,1:5,8 +chr2 92909528 . C A 0 PASS DP=48;GPV=1;SPV=0.022996;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:14,1:10,8 +chr2 92956450 . A G 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:0,1:35,4 +chr2 92992587 . T A 0 PASS DP=144;GPV=1;SPV=0.01794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:75,19:35,13:40,6 +chr2 93070152 . G A 0 PASS DP=34;GPV=1;SPV=0.011208;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,7:5,1 +chr2 93077499 . C A 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,5:5,3 +chr2 93100041 . G A 0 PASS DP=60;GPV=1;SPV=0.16867;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:35,4:0,0 +chr2 93114949 . C T 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:11,3:25,1 +chr2 93164279 . C G 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,1:9,3 +chr2 93215666 . A T 0 PASS DP=75;GPV=1;SPV=0.043236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,2:16,5 +chr2 93233897 . C A 0 PASS DP=55;GPV=1;SPV=0.080194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,1:23,5 +chr2 93249883 . T C 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr2 93432710 . C T 0 PASS DP=143;GPV=1;SPV=0.031747;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:66,12:26,7:40,5 +chr2 93459900 . T G 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,3:25,1 +chr2 93551914 . G A 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:0,5:6,4 +chr2 93575342 . G T 0 PASS DP=73;GPV=1;SPV=0.023393;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:30,7:9,1 +chr2 93596222 . A G 0 PASS DP=89;GPV=1;SPV=0.025703;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:41,6:6,1 +chr2 93672880 . C G 0 PASS DP=339;GPV=1;SPV=0.017673;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:189,23:62,12:127,11 +chr2 93683512 . A T 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr2 93690772 . T A 0 PASS DP=33;GPV=1;SPV=0.25968;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,1:7,3 +chr2 93864295 . G C 0 PASS DP=59;GPV=1;SPV=0.0066847;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:11,5:11,5 +chr2 93958145 . A G 0 PASS DP=241;GPV=1;SPV=0.0012808;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:119,21:98,18:21,3 +chr2 94073421 . GAA G 0 PASS DP=48;GPV=1;SPV=0.23474;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:18,2:9,1 +chr2 94084064 . T G 0 PASS DP=51;GPV=1;SPV=0.29538;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:20,3:14,1 +chr2 94084147 . G T 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr2 94084897 . T A 0 PASS DP=49;GPV=1;SPV=0.14592;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:11,3:18,2 +chr2 94286187 . A G 0 PASS DP=216;GPV=1;SPV=0.011597;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:100,27:56,12:44,15 +chr2 94287837 . G T 0 PASS DP=388;GPV=1;SPV=0.0017827;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:198,28:75,3:123,25 +chr2 94851909 . G GTT 0 PASS DP=45;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:16,3:3,1 +chr2 95484068 . T TA 0 PASS DP=56;GPV=1;SPV=0.012518;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,9:11,3 +chr2 95936776 . C A 0 PASS DP=229;GPV=1;SPV=0.030583;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:102,20:70,16:32,4 +chr2 95987605 . CT C 0 PASS DP=36;GPV=1;SPV=0.0047325;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:5,3:6,4 +chr2 96009000 . C T 0 PASS DP=95;GPV=1;SPV=6.3244e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:15,6:22,8 +chr2 96023181 . G A 0 PASS DP=108;GPV=1;SPV=0.016968;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:50,6:21,4:29,2 +chr2 96462406 . C T 0 PASS DP=150;GPV=1;SPV=0.015623;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:65,10:35,8:30,2 +chr2 97060632 . C T 0 PASS DP=94;GPV=1;SPV=0.0034588;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:25,5:18,4 +chr2 100014783 . C CTTTTTTTTTTT 0 PASS DP=24;GPV=1;SPV=0.022311;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,4:4,2 +chr2 102487178 . G GGT 0 PASS DP=108;GPV=1;SPV=0.0025178;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:20,3:25,5 +chr2 102818770 . C G 0 PASS DP=86;GPV=1;SPV=0.043302;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:26,3:20,3 +chr2 103496471 . T C 0 PASS DP=94;GPV=1;SPV=3.4306e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:22,7:14,8 +chr2 103705085 . TATATATAA T 0 PASS DP=45;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,7:5,2 +chr2 105522330 . AAG A 0 PASS DP=36;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,4:3,2:7,2 +chr2 106287921 . AAAC A 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:10,1:20,4 +chr2 106394211 . C G 0 PASS DP=69;GPV=1;SPV=0.015335;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:13,5:12,8 +chr2 106464556 . C T 0 PASS DP=117;GPV=1;SPV=0.0044711;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:14,5:29,1 +chr2 107904796 . C T 0 PASS DP=97;GPV=1;SPV=0.003233;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:14,11:25,3 +chr2 109606672 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:6,3:1,2 +chr2 110175315 . C T 0 PASS DP=89;GPV=1;SPV=0.00037706;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,4:17,6 +chr2 111551691 . G A 0 PASS DP=29;GPV=1;SPV=0.0021846;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:2,2:6,9 +chr2 111812295 . A G 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2 +chr2 113236228 . G A 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,3:7,1 +chr2 113394909 . A G 0 PASS DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:0,1:9,6 +chr2 113561824 . T C 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,3:16,1 +chr2 113594232 . AG A 0 PASS DP=122;GPV=1;SPV=0.046454;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:30,2:28,5 +chr2 114026437 . G A 0 PASS DP=110;GPV=1;SPV=0.000332;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:51,14:22,3:29,11 +chr2 116900074 . C T 0 PASS DP=84;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:12,4:9,1:3,3 +chr2 116900753 . TC T 0 PASS DP=53;GPV=1;SPV=0.011003;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,5:11,6 +chr2 117042252 . T TTA 0 PASS DP=68;GPV=1;SPV=0.042657;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:19,7:10,3 +chr2 117736666 . G A 0 PASS DP=77;GPV=1;SPV=0.00015203;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:18,6:10,6 +chr2 118030701 . T A 0 PASS DP=111;GPV=1;SPV=1.0575e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:46,19:25,12:21,7 +chr2 118200387 . T C 0 PASS DP=68;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,4:9,3:15,1 +chr2 118200397 . TATATACAC T 0 PASS DP=63;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,5:7,3:14,2 +chr2 118563884 . AAAAGAAAGAAAGAAAGAAAG A 0 PASS DP=54;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,7:8,5:4,2 +chr2 119529550 . CAAAAAAAA C 0 PASS DP=36;GPV=1;SPV=0.013393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,13:7,11:1,2 +chr2 121235579 . T C 0 PASS DP=50;GPV=1;SPV=0.0026133;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:7,5:9,6 +chr2 123358800 . CTTTTTTTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=17;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1 +chr2 124237077 . C T 0 PASS DP=108;GPV=1;SPV=0.00019654;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:22,5:24,8 +chr2 125013436 . T TA 0 PASS DP=18;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,4:2,1 +chr2 125032097 . T C 0 PASS DP=81;GPV=1;SPV=0.0029706;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:21,2:12,6 +chr2 125894961 . CAT C 0 PASS DP=30;GPV=1;SPV=0.013285;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,1:4,5 +chr2 128606445 . C T 0 PASS DP=77;GPV=1;SPV=0.0068293;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:17,8:20,1 +chr2 129435058 . C CTT 0 PASS DP=41;GPV=1;SPV=0.017739;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,8:9,1 +chr2 130226771 . T C 0 PASS DP=92;GPV=1;SPV=0.029035;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,1:20,9 +chr2 130637244 . T G 0 PASS DP=82;GPV=1;SPV=0.0082085;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:20,6:13,12 +chr2 130680549 . T G 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,3:9,1 +chr2 131275700 . C T 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr2 132012048 . TA T 0 PASS DP=229;GPV=1;SPV=0.023941;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:36,6:64,12 +chr2 132052015 . A C 0 PASS DP=180;GPV=1;SPV=0.034853;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:90,13:47,3:43,10 +chr2 132723140 . A AT 0 PASS DP=59;GPV=1;SPV=0.020153;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,7:14,5:7,2 +chr2 133302829 . C G 0 PASS DP=107;GPV=1;SPV=1.6041e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:45,19:24,8:21,11 +chr2 133960430 . C CT 0 PASS DP=33;GPV=1;SPV=0.037959;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,2:2,2 +chr2 134465189 . T TAAAA 0 PASS DP=83;GPV=1;SPV=0.077652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:18,3:27,2 +chr2 137781367 . G A 0 PASS DP=99;GPV=1;SPV=4.3552e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:19,9:15,7 +chr2 137911418 . ATTTTTTTT A 0 PASS DP=57;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,11:9,8:4,3 +chr2 138984952 . TCTTC T 0 PASS DP=52;GPV=1;SPV=0.07563;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,2:17,2 +chr2 139200479 . G A 0 PASS DP=82;GPV=1;SPV=0.00022098;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:17,3:11,7 +chr2 139975755 . C A 0 PASS DP=93;GPV=1;SPV=0.0012829;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:48,16:27,13:21,3 +chr2 140743990 . AAGT A 0 PASS DP=29;GPV=1;SPV=0.00059538;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:18:1,10:1,4:0,6 +chr2 141645469 . C CT 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:9,5:1,1 +chr2 141962869 . G A 0 PASS DP=89;GPV=1;SPV=0.0010228;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:20,5:19,6 +chr2 142353850 . C G 0 PASS DP=34;GPV=1;SPV=0.019548;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:5,2:5,5 +chr2 143090910 . C A 0 PASS DP=98;GPV=1;SPV=0.0011295;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:15,3:27,7 +chr2 145080448 . T C 0 PASS DP=82;GPV=1;SPV=0.15966;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:17,3:8,1:9,2 +chr2 146135294 . C CTT 0 PASS DP=46;GPV=1;SPV=0.0047012;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:7,9:5,2 +chr2 148411512 . C CT 0 PASS DP=31;GPV=1;SPV=0.060124;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,4:10,1 +chr2 149675021 . A ATCTATCTATCTATCTATCTATC 0 PASS DP=100;GPV=1;SPV=0.04668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:28,8:8,6:20,2 +chr2 149988264 . T C 0 PASS DP=94;GPV=1;SPV=0.0083921;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:21,5:21,2 +chr2 150184369 . A AACACAC 0 PASS DP=57;GPV=1;SPV=0.03053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:18,8:4,3 +chr2 150304967 . T C 0 PASS DP=85;GPV=1;SPV=0.00048032;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:22,9:15,4 +chr2 150653021 . C A 0 PASS DP=122;GPV=1;SPV=2.3536e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:41,24:17,8:24,16 +chr2 153069708 . G A 0 PASS DP=109;GPV=1;SPV=8.0829e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:21,7:22,6 +chr2 153345635 . TTTTC T 0 PASS DP=58;GPV=1;SPV=0.009702;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,9:1,6:15,3 +chr2 153414478 . A AT 0 PASS DP=66;GPV=1;SPV=0.010719;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:21,6:8,1 +chr2 154118282 . C CTT 0 PASS DP=51;GPV=1;SPV=0.032462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,16:10,7:10,9 +chr2 154417282 . C CA 0 PASS DP=49;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:12,5:4,2 +chr2 154620996 . T C 0 PASS DP=30;GPV=1;SPV=0.11785;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:3,2:10,4 +chr2 155613561 . T G 0 PASS DP=87;GPV=1;SPV=0.037461;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:5,8:3,5:2,3 +chr2 156462454 . T A 0 PASS DP=59;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,4:5,1:13,3 +chr2 156617063 . T C 0 PASS DP=71;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,4:10,3:13,1 +chr2 156773425 . T G 0 PASS DP=93;GPV=1;SPV=0.0066107;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:19,6:27,3 +chr2 162285325 . G A 0 PASS DP=99;GPV=1;SPV=0.032385;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:28,5:23,1 +chr2 164259174 . C T 0 PASS DP=79;GPV=1;SPV=0.0013605;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:15,5:21,7 +chr2 164584147 . AT A 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:4,3:5,1 +chr2 165520782 . AT A 0 PASS DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,4:9,3:1,1 +chr2 165766678 . T A 0 PASS DP=46;GPV=1;SPV=0.038035;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:17,6:6,1 +chr2 165927223 . T C 0 PASS DP=25;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:5,2:5,2 +chr2 167683806 . C T 0 PASS DP=85;GPV=1;SPV=2.1162e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,6:14,10 +chr2 169079881 . GAA G 0 PASS DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:10,3:6,2 +chr2 169284256 . C CTCT 0 PASS DP=26;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:2,4:5,1 +chr2 169466445 . TATAAAC T 0 PASS DP=43;GPV=1;SPV=0.13115;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:17,1:6,4 +chr2 169591920 . AT A 0 PASS DP=45;GPV=1;SPV=0.0095308;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,6:10,2:2,4 +chr2 169969548 . C CT 0 PASS DP=47;GPV=1;SPV=0.0011242;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,12:10,9:3,3 +chr2 170230336 . A ATTTT 0 PASS DP=44;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,9:8,4:8,5 +chr2 171496400 . A C 0 PASS DP=85;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,4:16,1:8,3 +chr2 171508528 . C A 0 PASS DP=109;GPV=1;SPV=4.7992e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:24,7:19,7 +chr2 172744982 . T C 0 PASS DP=99;GPV=1;SPV=7.0728e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:17,9:25,7 +chr2 172857881 . CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:6,3:7,1 +chr2 172911758 . CT C 0 PASS DP=30;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr2 173844256 . C CGTGTGT 0 PASS DP=66;GPV=1;SPV=0.0032844;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,14:9,8:4,6 +chr2 174110302 . A AT 0 PASS DP=45;GPV=1;SPV=0.0023112;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,15:5,12:4,3 +chr2 174540463 . C CAAA 0 PASS DP=36;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:4,7:6,1 +chr2 177853678 . ATATGTG A 0 PASS DP=32;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,4:1,2:7,2 +chr2 177855903 . AACAC A 0 PASS DP=63;GPV=1;SPV=0.0023233;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:12,13:8,10:4,3 +chr2 179027646 . CAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:4,3:9,1 +chr2 181301902 . T A 0 PASS DP=85;GPV=1;SPV=0.0089356;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:20,5:23,4 +chr2 181418864 . CT C 0 PASS DP=29;GPV=1;SPV=0.097916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,1:4,4 +chr2 183242462 . A T 0 PASS DP=43;GPV=1;SPV=0.0090729;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,8:4,3:8,5 +chr2 183265413 . C CAAAAAAAA 0 PASS DP=31;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:6,5:8,1 +chr2 183283860 . TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=71;GPV=1;SPV=0.085684;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:16,3:26,3 +chr2 186406821 . A T 0 PASS DP=83;GPV=1;SPV=0.045381;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:20,2:24,4 +chr2 187243808 . T TACACACACAC 0 PASS DP=60;GPV=1;SPV=0.034248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,5:15,3:8,2 +chr2 189835906 . C CAAA 0 PASS DP=58;GPV=1;SPV=0.015597;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,10:19,9:4,1 +chr2 191524061 . G GT 0 PASS DP=31;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:8,2:4,2 +chr2 194519854 . A AT 0 PASS DP=61;GPV=1;SPV=0.024221;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:16,4:12,2 +chr2 194623176 . TTG T 0 PASS DP=98;GPV=1;SPV=0.011999;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,7:25,4:21,3 +chr2 196613582 . T TA 0 PASS DP=95;GPV=1;SPV=0.00015878;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:22,9:18,5 +chr2 196626026 . CA C 0 PASS DP=40;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,8:5,2 +chr2 197240374 . C CA 0 PASS DP=52;GPV=1;SPV=0.0078195;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,13:12,11:6,2 +chr2 197695447 . T TA 0 PASS DP=97;GPV=1;SPV=0.036723;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:25,2:26,4 +chr2 197853604 . C T 0 PASS DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:19,4:20,7 +chr2 198253112 . G T 0 PASS DP=102;GPV=1;SPV=0.0064775;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:21,6:27,2 +chr2 199290797 . G A 0 PASS DP=96;GPV=1;SPV=3.1445e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:26,9:13,8 +chr2 199701299 . TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA T 0 PASS DP=31;GPV=1;SPV=0.040458;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,7:6,6:4,1 +chr2 203271080 . ATATTTT A 0 PASS DP=27;GPV=1;SPV=0.022999;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:4,4:3,2 +chr2 203512621 . C CT 0 PASS DP=52;GPV=1;SPV=0.019226;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,7:8,2 +chr2 204362490 . A AGATAGATAGATAGATG 0 PASS DP=74;GPV=1;SPV=0.0049095;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,13:11,10:8,3 +chr2 206180734 . C CATTATTATT 0 PASS DP=61;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:16,13:5,7:11,6 +chr2 207820890 . CTTT C 0 PASS DP=24;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:4,4:4,1 +chr2 208173120 . CAA C 0 PASS DP=53;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,11:7,9:3,2 +chr2 209510211 . G GT 0 PASS DP=86;GPV=1;SPV=0.0066158;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:24,6:18,3 +chr2 211317921 . CG C 0 PASS DP=62;GPV=1;SPV=0.044904;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,8:15,5:7,3 +chr2 212949823 . GTTT G 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:7,6:4,3 +chr2 214595549 . G A 0 PASS DP=69;GPV=1;SPV=0.03415;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:11,6:15,5 +chr2 214608659 . T G 0 PASS DP=84;GPV=1;SPV=0.041404;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:18,4:16,2 +chr2 215246625 . C A 0 PASS DP=56;GPV=1;SPV=0.076205;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,4:7,3:16,1 +chr2 216187470 . G C 0 PASS DP=44;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,2:4,1:2,1 +chr2 217150072 . C T 0 PASS DP=82;GPV=1;SPV=0.00022563;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:25,8:5,3 +chr2 217229439 . CTTTT C 0 PASS DP=34;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:9,2:5,2 +chr2 217293693 . A G 0 PASS DP=101;GPV=1;SPV=2.52e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:20,6:17,8 +chr2 217809576 . GATAGGTGC G 0 PASS DP=61;GPV=1;SPV=0.02182;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,8:9,3:15,5 +chr2 218321623 . CT C 0 PASS DP=50;GPV=1;SPV=0.0062802;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:17,7:5,3 +chr2 218588588 . CTT C 0 PASS DP=27;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:4,1:3,5 +chr2 219159526 . C CAT 0 PASS DP=47;GPV=1;SPV=0.21839;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,4:12,2:5,2 +chr2 220791974 . AT A 0 PASS DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1 +chr2 220833442 . T TACACACAC 0 PASS DP=64;GPV=1;SPV=0.010567;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,15:15,13:8,2 +chr2 221405710 . T TTTTGTTTTTTTTTTTTG 0 PASS DP=36;GPV=1;SPV=0.013894;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,4:3,1:4,3 +chr2 221868009 . G A 0 PASS DP=109;GPV=1;SPV=8.0829e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:19,7:24,6 +chr2 222323434 . A T 0 PASS DP=39;GPV=1;SPV=0.028638;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,9:1,4:3,5 +chr2 222816602 . T C 0 PASS DP=31;GPV=1;SPV=0.18154;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:15,3:4,1:11,2 +chr2 223321343 . G A 0 PASS DP=94;GPV=1;SPV=4.8214e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:24,8:13,7 +chr2 223547202 . A T 0 PASS DP=88;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,4:13,2:13,2 +chr2 223626106 . G GGAA 0 PASS DP=64;GPV=1;SPV=0.022123;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,6:22,5:5,1 +chr2 223626112 . G A 0 PASS DP=71;GPV=1;SPV=0.023915;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:18,9:11,6:7,3 +chr2 227045783 . CAT C 0 PASS DP=47;GPV=1;SPV=0.052629;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,1:12,4 +chr2 227377124 . T A 0 PASS DP=80;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:1,2:0,1:1,1 +chr2 227427984 . C CTCTTTTCTTTCTTT 0 PASS DP=70;GPV=1;SPV=0.038786;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:8,2:24,3 +chr2 228055142 . C CAAAAAAAAAAA 0 PASS DP=46;GPV=1;SPV=0.22222;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,2:3,2:0,0 +chr2 228139910 . T TTTTCTTTCTTTCTTTCTTTCTTTCTTTC 0 PASS DP=23;GPV=1;SPV=0.21504;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,3:2,2:8,1 +chr2 228393427 . T TATAA 0 PASS DP=50;GPV=1;SPV=0.05461;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:10,2:10,2 +chr2 228403532 . A G 0 PASS DP=122;GPV=1;SPV=0.0020126;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:63,12:36,6:27,6 +chr2 230222840 . G GT 0 PASS DP=46;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:15,2:7,2 +chr2 230782817 . T C 0 PASS DP=57;GPV=1;SPV=0.091036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,1:12,3 +chr2 231852022 . TC T 0 PASS DP=49;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,5:2,3:4,2 +chr2 232886127 . A G 0 PASS DP=91;GPV=1;SPV=0.05558;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,5:12,2:17,3 +chr2 233253340 . G T 0 PASS DP=32;GPV=1;SPV=0.0070941;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,5:3,5 +chr2 233258016 . AATATCTAT A 0 PASS DP=87;GPV=1;SPV=0.0024809;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:13,3:14,12 +chr2 234561655 . G T 0 PASS DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:17,9:16,5 +chr2 234747587 . AT A 0 PASS DP=38;GPV=1;SPV=0.0030816;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:9,14:5,8:4,6 +chr2 235090896 . CTTCTTTCTTTCT C 0 PASS DP=77;GPV=1;SPV=0.033381;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,12:13,4:22,8 +chr2 236024021 . G GT 0 PASS DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,2:16,2 +chr2 238162785 . G A 0 PASS DP=143;GPV=1;SPV=0.0029955;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:28,7:44,3 +chr2 239094421 . C A 0 PASS DP=73;GPV=1;SPV=3.883e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:18,8:9,9 +chr2 241848563 . C T 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,2:7,5 +chr2 242178601 . T G 0 PASS DP=188;GPV=1;SPV=0.017245;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:89,16:49,9:40,7 +chr20 227692 . C A 0 PASS DP=59;GPV=1;SPV=0.052186;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr20 508437 . A T 0 PASS DP=82;GPV=1;SPV=6.7435e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:13,9:15,3 +chr20 1948736 . AAAAAAG A 0 PASS DP=81;GPV=1;SPV=0.034215;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,6:16,3:15,3 +chr20 4103854 . C CAA 0 PASS DP=66;GPV=1;SPV=0.018271;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,9:15,8:6,1 +chr20 4768812 . T C 0 PASS DP=69;GPV=1;SPV=0.12821;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:3,2:2,1:1,1 +chr20 5763290 . C CA 0 PASS DP=71;GPV=1;SPV=0.0049095;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,13:17,11:2,2 +chr20 6530251 . C T 0 PASS DP=109;GPV=1;SPV=8.189e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:48,16:24,8:24,8 +chr20 6606159 . CTT C 0 PASS DP=56;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:3,1:23,4 +chr20 7810723 . CT C 0 PASS DP=55;GPV=1;SPV=0.045061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,4:12,1 +chr20 8031760 . GATGTATGTGTGTATGTATGATGT G 0 PASS DP=64;GPV=1;SPV=0.046772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,5:13,4:16,1 +chr20 8123251 . A T 0 PASS DP=76;GPV=1;SPV=0.072687;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:21,3:23,3 +chr20 9189274 . T C 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:14,3:6,1 +chr20 9191345 . AT A 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,2:5,2 +chr20 10118020 . A AAT 0 PASS DP=28;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:6,6:1,2 +chr20 10336200 . A G 0 PASS DP=64;GPV=1;SPV=0.00038475;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:16,4:7,7 +chr20 12341282 . T TG 0 PASS DP=98;GPV=1;SPV=0.045641;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:20,3:21,5 +chr20 13960126 . A G 0 PASS DP=95;GPV=1;SPV=1.8386e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:22,11:15,6 +chr20 14008889 . A G 0 PASS DP=100;GPV=1;SPV=0.00041767;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:20,6:23,6 +chr20 15294120 . T TAAA 0 PASS DP=59;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,15:10,11:12,4 +chr20 18118892 . C CTT 0 PASS DP=32;GPV=1;SPV=0.44608;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,4:3,2:8,2 +chr20 18464667 . CTT C 0 PASS DP=35;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,3:5,1 +chr20 20411129 . C T 0 PASS DP=121;GPV=1;SPV=6.1367e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:28,9:27,8 +chr20 20937991 . G A 0 PASS DP=91;GPV=1;SPV=0.00030699;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:28,9:14,7 +chr20 21463989 . C T 0 PASS DP=108;GPV=1;SPV=0.00089328;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:20,6:19,2 +chr20 21944595 . C T 0 PASS DP=98;GPV=1;SPV=0.00011575;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:23,6:20,10 +chr20 22082620 . G GTATATATGA 0 PASS DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,3:18,1 +chr20 25027351 . C T 0 PASS DP=105;GPV=1;SPV=0.00017575;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:18,5:24,7 +chr20 26514233 . G T 0 PASS DP=257;GPV=1;SPV=0.019443;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:124,15:105,6:19,9 +chr20 26534544 . T A 0 PASS DP=248;GPV=1;SPV=0.0069962;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:122,16:122,13:0,3 +chr20 27540217 . C T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr20 28518449 . T A 0 PASS DP=1270;GPV=1;SPV=0.039135;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:738:660,78:195,25:465,53 +chr20 28521867 . T C 0 PASS DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:23,2:8,2 +chr20 28547142 . T G 0 PASS DP=547;GPV=1;SPV=0.027317;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:305:273,31:215,23:58,8 +chr20 28614307 . TTC T 0 PASS DP=395;GPV=1;SPV=0.043453;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:223:198,25:112,13:86,12 +chr20 28623285 . C T 0 PASS DP=318;GPV=1;SPV=0.012606;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:149,36:105,20:44,16 +chr20 28640875 . C T 0 PASS DP=175;GPV=1;SPV=0.026665;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:99,11:54,9:45,2 +chr20 28645448 . G C 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,5:5,3 +chr20 28861781 . AC A 0 PASS DP=146;GPV=1;SPV=0.031078;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:70,13:42,8:28,5 +chr20 28890149 . C CA 0 PASS DP=201;GPV=1;SPV=0.012413;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:96,17:29,4:67,13 +chr20 29073075 . TA T 0 PASS DP=407;GPV=1;SPV=0.03738;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:178,29:72,4:106,25 +chr20 29073097 . C T 0 PASS DP=384;GPV=1;SPV=0.048485;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:175,31:61,8:114,23 +chr20 29119431 . T C 0 PASS DP=311;GPV=1;SPV=0.028171;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:140,19:63,6:77,13 +chr20 29248974 . C CA 0 PASS DP=376;GPV=1;SPV=0.026235;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:229,27:131,17:98,10 +chr20 29321156 . CA C 0 PASS DP=296;GPV=1;SPV=0.0019801;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:132,39:69,11:63,28 +chr20 29503185 . A G 0 PASS DP=436;GPV=1;SPV=0.014857;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:248:212,36:109,11:103,25 +chr20 29504586 . AT A 0 PASS DP=183;GPV=1;SPV=0.0088583;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:61,19:25,6:36,13 +chr20 29662251 . T C 0 PASS DP=100;GPV=1;SPV=0.042124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:20,6:18,1 +chr20 29738863 . A G 0 PASS DP=301;GPV=1;SPV=0.043134;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:143,24:63,6:80,18 +chr20 29821788 . T C 0 PASS DP=255;GPV=1;SPV=0.0047543;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:118,20:48,15:70,5 +chr20 29880455 . G A 0 PASS DP=928;GPV=1;SPV=0.0029875;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:501:450,51:251,31:199,20 +chr20 29880516 . G A 0 PASS DP=828;GPV=1;SPV=0.01893;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:438:387,51:204,35:183,16 +chr20 29897157 . G T 0 PASS DP=307;GPV=1;SPV=0.046093;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:144,25:68,14:76,11 +chr20 30154381 . C A 0 PASS DP=102;GPV=1;SPV=0.0012895;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:49,12:21,7:28,5 +chr20 30727455 . CACACACACACGT C 0 PASS DP=88;GPV=1;SPV=0.024635;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,8:17,6:12,2 +chr20 30727526 . C T 0 PASS DP=120;GPV=1;SPV=0.017892;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,11:33,8:21,3 +chr20 31054776 . T A 0 PASS DP=671;GPV=1;SPV=0.033557;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:343:300,43:145,20:155,23 +chr20 31060810 . G C 0 PASS DP=1686;GPV=1;SPV=0.011049;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:995:882,100:445,75:437,25 +chr20 31069228 . T A 0 PASS DP=1178;GPV=1;SPV=0.001115;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:699:588,111:204,27:384,84 +chr20 31072178 . T TGGAAA 0 PASS DP=1113;GPV=1;SPV=0.040867;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:663:553,70:251,41:302,29 +chr20 31171448 . G GAAT 0 PASS DP=78;GPV=1;SPV=0.045288;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:15,5:26,1 +chr20 34650694 . T G 0 PASS DP=57;GPV=1;SPV=0.077531;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:12,2:18,3 +chr20 35578117 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:1,4:4,2 +chr20 35926362 . C T 0 PASS DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:15,4:15,1 +chr20 36317223 . TTTTC T 0 PASS DP=63;GPV=1;SPV=0.0045492;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,9:5,3:17,6 +chr20 37073705 . G A 0 PASS DP=40;GPV=1;SPV=0.049428;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:4,4:4,6 +chr20 37480592 . C T 0 PASS DP=28;GPV=1;SPV=0.042986;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,5:0,3:3,2 +chr20 37519404 . C CA 0 PASS DP=58;GPV=1;SPV=0.011194;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:22,6:3,1 +chr20 38468121 . C T 0 PASS DP=109;GPV=1;SPV=0.00055593;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:49,12:28,5:21,7 +chr20 38662745 . T C 0 PASS DP=58;GPV=1;SPV=0.041365;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,3:8,1 +chr20 39636426 . G A 0 PASS DP=105;GPV=1;SPV=0.018013;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:28,4:21,2 +chr20 39700651 . G A 0 PASS DP=90;GPV=1;SPV=0.00075349;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:26,10:14,2 +chr20 40094345 . CTTT C 0 PASS DP=36;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,3:10,1 +chr20 41555257 . G C 0 PASS DP=36;GPV=1;SPV=0.027859;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,5:7,1 +chr20 41848464 . AT A 0 PASS DP=71;GPV=1;SPV=0.0069091;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:18,6:17,4 +chr20 42363270 . TTATATATATATATA T 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:16,3:7,1 +chr20 42423178 . T TAA 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:11,6:7,4 +chr20 42655416 . G T 0 PASS DP=94;GPV=1;SPV=0.0011693;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:26,5:18,7 +chr20 45942278 . C CT 0 PASS DP=75;GPV=1;SPV=0.055772;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:20,4:18,1 +chr20 46568401 . CA C 0 PASS DP=52;GPV=1;SPV=0.011308;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:11,7:8,2 +chr20 47039835 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.0012546;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,13:3,11:2,2 +chr20 48515196 . C G 0 PASS DP=124;GPV=1;SPV=0.0065333;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:15,4:40,3 +chr20 54481002 . C CT 0 PASS DP=113;GPV=1;SPV=0.037368;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:49,11:29,4:20,7 +chr20 55587924 . G C 0 PASS DP=101;GPV=1;SPV=0.00018355;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,18:25,4:23,14 +chr20 56114844 . C T 0 PASS DP=91;GPV=1;SPV=0.00029833;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:20,4:13,6 +chr20 57350881 . G C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr20 58736472 . C CAA 0 PASS DP=59;GPV=1;SPV=0.14971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,7:17,5:8,2 +chr20 59491334 . ATTTT A 0 PASS DP=64;GPV=1;SPV=0.0041352;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,8:13,5:6,3 +chr20 60018702 . CTTTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr20 61126462 . T TA 0 PASS DP=79;GPV=1;SPV=0.03212;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:13,7:19,5 +chr20 61329895 . G GTCCATCTGT 0 PASS DP=59;GPV=1;SPV=0.0053893;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,14:2,3:18,11 +chr20 61329897 . G C 0 PASS DP=53;GPV=1;SPV=0.011956;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:2,3:17,11 +chr20 62226743 . G A 0 PASS DP=116;GPV=1;SPV=9.3901e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:23,5:24,8 +chr20 63221510 . CGGACTGCAGGGATTGCAG C 0 PASS DP=133;GPV=1;SPV=0.008266;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:61,10:30,8:31,2 +chr20 63626400 . G A 0 PASS DP=67;GPV=1;SPV=0.045056;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:21,5:14,1 +chr20 64131416 . A C 0 PASS DP=55;GPV=1;SPV=0.26796;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,1:19,3 +chr21 5377310 . G GA 0 PASS DP=75;GPV=1;SPV=0.019526;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,8:17,1 +chr21 5377321 . A G 0 PASS DP=75;GPV=1;SPV=0.0090348;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:13,10:16,2 +chr21 7234619 . C A 0 PASS DP=133;GPV=1;SPV=0.019047;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:35,11:26,6 +chr21 7284211 . G A 0 PASS DP=127;GPV=1;SPV=0.034032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:62,8:33,3:29,5 +chr21 7311054 . C G 0 PASS DP=118;GPV=1;SPV=0.0082281;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:56,15:17,4:39,11 +chr21 7947593 . C T 0 PASS DP=324;GPV=1;SPV=0.012346;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:139,27:61,10:78,17 +chr21 7956671 . T G 0 PASS DP=261;GPV=1;SPV=0.04126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:111,15:52,5:59,10 +chr21 8032662 . G T 0 PASS DP=148;GPV=1;SPV=0.037103;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:75,11:38,6:37,5 +chr21 8043442 . T C 0 PASS DP=207;GPV=1;SPV=0.024791;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:102,25:39,10:63,15 +chr21 8530938 . G T 0 PASS DP=310;GPV=1;SPV=0.049839;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:146,27:68,10:78,17 +chr21 8545244 . C T 0 PASS DP=203;GPV=1;SPV=0.026785;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:88,16:43,6:45,10 +chr21 8549900 . ACGCGGCTTTTTGCGCCCACCGC A 0 PASS DP=56;GPV=1;SPV=0.16038;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr21 8671742 . A C 0 PASS DP=158;GPV=1;SPV=0.0027686;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:65,24:40,13:25,11 +chr21 8702759 . C CAT 0 PASS DP=267;GPV=1;SPV=0.011216;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:101,25:58,9:43,16 +chr21 8763455 . G T 0 PASS DP=366;GPV=1;SPV=0.0029205;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:157,33:86,17:71,16 +chr21 8763673 . G T 0 PASS DP=363;GPV=1;SPV=0.043572;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:177,24:90,14:87,10 +chr21 8771691 . T A 0 PASS DP=325;GPV=1;SPV=0.049824;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:149,23:74,17:75,6 +chr21 8778000 . G A 0 PASS DP=450;GPV=1;SPV=0.032269;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:247:216,31:112,15:104,16 +chr21 8779650 . T A 0 PASS DP=380;GPV=1;SPV=0.016695;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:176,31:91,20:85,11 +chr21 8797707 . C T 0 PASS DP=59;GPV=1;SPV=0.022054;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:4,1:26,7 +chr21 8806422 . G A 0 PASS DP=66;GPV=1;SPV=0.028409;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,1:16,3 +chr21 8806745 . G C 0 PASS DP=201;GPV=1;SPV=0.04515;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:96,13:61,8:35,5 +chr21 8815758 . C T 0 PASS DP=587;GPV=1;SPV=0.034858;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:321:276,44:96,18:180,26 +chr21 8816612 . A G 0 PASS DP=292;GPV=1;SPV=0.043024;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:132,28:114,21:18,7 +chr21 8819382 . C A 0 PASS DP=97;GPV=1;SPV=0.046688;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:24,3:17,3 +chr21 8823242 . G T 0 PASS DP=64;GPV=1;SPV=0.043789;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,3:12,2 +chr21 8825121 . C T 0 PASS DP=440;GPV=1;SPV=0.047395;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:202,25:102,11:100,14 +chr21 8839785 . C T 0 PASS DP=357;GPV=1;SPV=0.029043;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:188:168,20:114,9:54,11 +chr21 8878700 . T C 0 PASS DP=841;GPV=1;SPV=0.047098;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:463:412,51:229,31:183,20 +chr21 8987900 . A G 0 PASS DP=2146;GPV=1;SPV=0.0050428;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:1153:1002,143:844,72:158,71 +chr21 8993706 . C T 0 PASS DP=447;GPV=1;SPV=0.04647;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:245:220,25:108,13:112,12 +chr21 9008657 . T C 0 PASS DP=404;GPV=1;SPV=0.018758;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:232:207,25:85,7:122,18 +chr21 9013374 . A G 0 PASS DP=350;GPV=1;SPV=0.0048849;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:148,35:82,23:66,12 +chr21 9013554 . C CT 0 PASS DP=326;GPV=1;SPV=0.043271;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:141,28:78,11:63,17 +chr21 9013741 . G A 0 PASS DP=367;GPV=1;SPV=0.046477;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:185,33:96,16:89,17 +chr21 9015952 . A G 0 PASS DP=522;GPV=1;SPV=0.046044;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:243,39:125,20:118,19 +chr21 9020764 . G A 0 PASS DP=500;GPV=1;SPV=0.012366;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:289:251,38:135,19:116,19 +chr21 9024027 . C A 0 PASS DP=529;GPV=1;SPV=0.021783;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:281:249,32:132,16:117,16 +chr21 9024957 . A C 0 PASS DP=476;GPV=1;SPV=0.038402;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:251:220,31:97,16:123,15 +chr21 9032118 . G A 0 PASS DP=544;GPV=1;SPV=0.029411;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:286:257,29:143,20:114,9 +chr21 9033231 . G A 0 PASS DP=511;GPV=1;SPV=0.0026081;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:262:229,33:118,14:111,19 +chr21 9041943 . G A 0 PASS DP=341;GPV=1;SPV=0.042496;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:167:149,18:81,9:68,9 +chr21 9056372 . A T 0 PASS DP=428;GPV=1;SPV=0.036967;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:203,30:131,22:72,8 +chr21 9059642 . A T 0 PASS DP=388;GPV=1;SPV=0.036616;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:222:194,28:121,19:73,9 +chr21 9070128 . G A 0 PASS DP=575;GPV=1;SPV=0.039435;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:285:256,29:133,23:123,6 +chr21 9102690 . T G 0 PASS DP=495;GPV=1;SPV=0.038667;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:272:231,41:151,14:80,27 +chr21 9106027 . C T 0 PASS DP=294;GPV=1;SPV=0.037169;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:135,21:72,12:63,9 +chr21 9110896 . T C 0 PASS DP=780;GPV=1;SPV=0.011975;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:451:383,68:172,26:211,42 +chr21 9120170 . T C 0 PASS DP=497;GPV=1;SPV=0.040604;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:245,33:123,17:122,16 +chr21 9123976 . C A 0 PASS DP=852;GPV=1;SPV=0.022951;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:474:417,57:223,31:194,26 +chr21 9131132 . C T 0 PASS DP=874;GPV=1;SPV=0.04638;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:456:396,60:206,28:190,32 +chr21 9150722 . A C 0 PASS DP=750;GPV=1;SPV=0.032696;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:402:348,54:179,29:169,25 +chr21 9155364 . C T 0 PASS DP=467;GPV=1;SPV=0.030253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:262:231,31:168,23:63,8 +chr21 9166199 . C CTTTT 0 PASS DP=272;GPV=1;SPV=0.037934;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:85,21:38,18:47,3 +chr21 9169532 . T A 0 PASS DP=733;GPV=1;SPV=0.02235;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:418:371,47:179,16:192,31 +chr21 9172451 . A T 0 PASS DP=524;GPV=1;SPV=0.038483;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:297:258,39:143,17:115,22 +chr21 9177169 . C T 0 PASS DP=605;GPV=1;SPV=0.0073745;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:339:298,41:176,19:122,22 +chr21 9192936 . G GA 0 PASS DP=457;GPV=1;SPV=0.038651;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:215,41:104,12:111,29 +chr21 9255491 . G A 0 PASS DP=952;GPV=1;SPV=0.0017834;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:530:470,54:204,18:266,36 +chr21 9264019 . T A 0 PASS DP=415;GPV=1;SPV=0.021377;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:189,32:99,24:90,8 +chr21 9265282 . AG A 0 PASS DP=325;GPV=1;SPV=0.0071758;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:185:156,29:104,19:52,10 +chr21 9286058 . T G 0 PASS DP=270;GPV=1;SPV=0.040609;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:133,20:105,12:28,8 +chr21 9292979 . GT G 0 PASS DP=374;GPV=1;SPV=0.021292;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:212:176,36:44,4:132,32 +chr21 9321336 . GT G 0 PASS DP=571;GPV=1;SPV=0.01829;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:308:264,44:132,23:132,21 +chr21 9334566 . A G 0 PASS DP=487;GPV=1;SPV=0.0040494;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:260:211,48:106,20:105,28 +chr21 9348069 . T G 0 PASS DP=669;GPV=1;SPV=0.00026859;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:363:295,68:130,28:165,40 +chr21 9362795 . C T 0 PASS DP=473;GPV=1;SPV=0.00051641;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:225,39:123,11:102,28 +chr21 9368395 . C T 0 PASS DP=1221;GPV=1;SPV=0.0091982;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:635:565,70:290,46:275,24 +chr21 9374811 . G T 0 PASS DP=861;GPV=1;SPV=0.040834;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:462:402,60:179,37:223,23 +chr21 9568119 . GATA G 0 PASS DP=207;GPV=1;SPV=0.021101;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:81,19:45,7:36,12 +chr21 9579930 . G C 0 PASS DP=297;GPV=1;SPV=0.00087408;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:122,35:57,19:65,16 +chr21 9604525 . C CAA 0 PASS DP=165;GPV=1;SPV=0.0084205;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:66,15:43,10:23,5 +chr21 9619052 . C T 0 PASS DP=189;GPV=1;SPV=0.011468;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:78,22:54,17:24,5 +chr21 9689135 . C T 0 PASS DP=237;GPV=1;SPV=0.026206;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:122,26:65,10:57,16 +chr21 9721868 . C T 0 PASS DP=212;GPV=1;SPV=0.033766;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:96,21:57,11:39,10 +chr21 9820722 . G T 0 PASS DP=588;GPV=1;SPV=0.021097;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:313:272,41:139,27:133,14 +chr21 9820972 . G A 0 PASS DP=797;GPV=1;SPV=0.0025079;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:426:371,55:144,25:227,30 +chr21 9858418 . A C 0 PASS DP=211;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:104,26:49,17:55,9 +chr21 9880504 . G A 0 PASS DP=109;GPV=1;SPV=0.0052311;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:45,16:23,8:22,8 +chr21 9942462 . C A 0 PASS DP=308;GPV=1;SPV=0.030683;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:145,25:67,11:78,14 +chr21 10024042 . G T 0 PASS DP=155;GPV=1;SPV=0.047615;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:43,14:31,6 +chr21 10087051 . A G 0 PASS DP=218;GPV=1;SPV=0.00063389;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:102,29:53,17:49,12 +chr21 10325231 . TATATA T 0 PASS DP=170;GPV=1;SPV=0.046502;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:69,9:43,8:26,1 +chr21 10333904 . C T 0 PASS DP=480;GPV=1;SPV=0.0018907;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:264:233,31:84,13:149,18 +chr21 10366189 . T C 0 PASS DP=237;GPV=1;SPV=0.040644;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:119,22:54,11:65,11 +chr21 10423803 . T A 0 PASS DP=544;GPV=1;SPV=0.010678;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:235,43:134,22:101,21 +chr21 10467542 . A G 0 PASS DP=502;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:239,30:120,16:119,14 +chr21 10469473 . G A 0 PASS DP=532;GPV=1;SPV=0.024453;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:291:247,44:120,20:127,24 +chr21 10472512 . GAAC G 0 PASS DP=520;GPV=1;SPV=0.0031242;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:220,49:120,27:100,22 +chr21 10480244 . T C 0 PASS DP=509;GPV=1;SPV=0.0024418;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:237,45:123,28:114,17 +chr21 10480245 . G A 0 PASS DP=518;GPV=1;SPV=0.0042244;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:287:242,45:129,28:113,17 +chr21 10485910 . C T 0 PASS DP=277;GPV=1;SPV=0.011841;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:162:137,25:70,13:67,12 +chr21 10679026 . ATTCCG A 0 PASS DP=223;GPV=1;SPV=0.016439;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:89,20:48,12:41,8 +chr21 10785034 . A G 0 PASS DP=270;GPV=1;SPV=0.0013993;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:139,30:56,10:83,20 +chr21 10798374 . G A 0 PASS DP=581;GPV=1;SPV=0.015273;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:361:315,46:170,26:145,20 +chr21 13137513 . G A 0 PASS DP=88;GPV=1;SPV=0.046561;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:9,7:34,1 +chr21 13144811 . C A 0 PASS DP=124;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:30,2:24,4 +chr21 13379484 . C T 0 PASS DP=35;GPV=1;SPV=0.013587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,5:9,3 +chr21 13641624 . G A 0 PASS DP=77;GPV=1;SPV=0.032295;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:18,1:13,8 +chr21 13907540 . G A 0 PASS DP=133;GPV=1;SPV=0.03431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:60,9:35,6:25,3 +chr21 16854693 . TTTC T 0 PASS DP=42;GPV=1;SPV=0.022726;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,2:8,6 +chr21 17483379 . C CTT 0 PASS DP=42;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,4:7,1:8,3 +chr21 17973417 . C CT 0 PASS DP=52;GPV=1;SPV=0.020011;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:11,6:5,2 +chr21 18982554 . A C 0 PASS DP=94;GPV=1;SPV=0.0067604;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:26,3:18,5 +chr21 19463992 . C CATACATATATATATAT 0 PASS DP=48;GPV=1;SPV=0.05384;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,5:12,4:9,1 +chr21 19628116 . C CAAAA 0 PASS DP=71;GPV=1;SPV=0.068138;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,4:21,3:11,1 +chr21 22232667 . G A 0 PASS DP=31;GPV=1;SPV=0.052643;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,4:8,2 +chr21 23590599 . CT C 0 PASS DP=41;GPV=1;SPV=0.015395;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,6:4,1 +chr21 23697931 . C T 0 PASS DP=94;GPV=1;SPV=0.025013;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:21,9:9,1:12,8 +chr21 24846151 . T G 0 PASS DP=32;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,2:5,2:0,0 +chr21 24948990 . C T 0 PASS DP=68;GPV=1;SPV=0.0052229;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:13,4:16,4 +chr21 25615142 . C T 0 PASS DP=85;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:11,5:4,2:7,3 +chr21 27298891 . G GTTTT 0 PASS DP=34;GPV=1;SPV=0.015718;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,7:4,5:1,2 +chr21 27347967 . A G 0 PASS DP=60;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,4:15,2:15,2 +chr21 27354565 . T A 0 PASS DP=97;GPV=1;SPV=0.0037211;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:26,4:19,5 +chr21 27416163 . TG T 0 PASS DP=26;GPV=1;SPV=0.12981;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:7,4:4,1 +chr21 27814389 . CACACACACACACACACACACATACACACACACACATATAT C 0 PASS DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:9,3:13,3 +chr21 28617212 . G T 0 PASS DP=106;GPV=1;SPV=0.0040373;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:20,5:27,3 +chr21 28877054 . G A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr21 31944841 . G A 0 PASS DP=93;GPV=1;SPV=0.0030877;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:19,5:20,3 +chr21 31947865 . G A 0 PASS DP=98;GPV=1;SPV=2.1435e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:17,3:22,14 +chr21 32258875 . T C 0 PASS DP=81;GPV=1;SPV=0.0097766;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:19,2:20,6 +chr21 33443898 . T TG 0 PASS DP=80;GPV=1;SPV=0.41384;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:34,4:17,2:17,2 +chr21 33577660 . C T 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,3:5,3 +chr21 34886880 . T G 0 PASS DP=109;GPV=1;SPV=2.4883e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,16:20,10:17,6 +chr21 35224837 . TAAAAA T 0 PASS DP=42;GPV=1;SPV=0.00060756;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,13:3,11:7,2 +chr21 36401545 . A G 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2 +chr21 36679792 . G GA 0 PASS DP=76;GPV=1;SPV=0.03324;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,7:26,3:10,4 +chr21 37715702 . G C 0 PASS DP=119;GPV=1;SPV=3.2932e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:21,7:23,10 +chr21 38080849 . G T 0 PASS DP=116;GPV=1;SPV=0.00015222;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:17,5:27,6 +chr21 38247073 . GATGGATGGATGGATGGATGGATGGATGC G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:15,2:18,2 +chr21 38823821 . C G 0 PASS DP=88;GPV=1;SPV=0.00014004;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:10,5:23,7 +chr21 40856359 . A T 0 PASS DP=92;GPV=1;SPV=0.055222;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:22,4:9,1:13,3 +chr21 42726623 . TA T 0 PASS DP=32;GPV=1;SPV=0.15385;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,4:3,2:3,2 +chr21 43285797 . G A 0 PASS DP=42;GPV=1;SPV=0.11553;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:5,1:18,4 +chr21 43285798 . A G 0 PASS DP=41;GPV=1;SPV=0.23453;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:5,1:20,3 +chr21 45798200 . A G 0 PASS DP=78;GPV=1;SPV=0.064069;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,2:12,2 +chr21 46011608 . C T 0 PASS DP=42;GPV=1;SPV=0.034481;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,2:8,4 +chr21 46135606 . C CCCCCTCACAAATGT 0 PASS DP=41;GPV=1;SPV=0.045809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:8,5:8,5 +chr21 46290029 . T TCG 0 PASS DP=150;GPV=1;SPV=0.0010541;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:63,17:37,6:26,11 +chr22 10689007 . G C 0 PASS DP=320;GPV=1;SPV=0.0079376;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:133,27:55,10:78,17 +chr22 10700391 . G C 0 PASS DP=523;GPV=1;SPV=0.033443;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:298:268,30:126,16:142,14 +chr22 10714537 . G A 0 PASS DP=513;GPV=1;SPV=0.036131;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:283:252,31:148,18:104,13 +chr22 10733494 . C T 0 PASS DP=981;GPV=1;SPV=0.043216;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:518:460,58:232,33:228,25 +chr22 10736687 . T C 0 PASS DP=893;GPV=1;SPV=0.013435;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:485:424,61:222,32:202,29 +chr22 10747965 . T TAA 0 PASS DP=527;GPV=1;SPV=0.0026073;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:240,38:123,4:117,34 +chr22 10750862 . C A 0 PASS DP=456;GPV=1;SPV=0.039077;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:265:238,27:134,14:104,13 +chr22 10751852 . G T 0 PASS DP=304;GPV=1;SPV=0.035037;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:144,27:57,20:87,7 +chr22 10769175 . C T 0 PASS DP=232;GPV=1;SPV=0.023598;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:110,26:42,11:68,15 +chr22 10770017 . C T 0 PASS DP=127;GPV=1;SPV=0.023772;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:15,2:38,9 +chr22 10859372 . G C 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr22 11037850 . CATGGTCTATCCACCAGAAGCTCCACT C 0 PASS DP=409;GPV=1;SPV=0.016737;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:192,25:116,11:76,14 +chr22 11045266 . A G 0 PASS DP=206;GPV=1;SPV=0.049948;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:105,12:62,3:43,9 +chr22 11450271 . C G 0 PASS DP=403;GPV=1;SPV=0.048218;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:189,28:69,18:120,10 +chr22 11461986 . C T 0 PASS DP=298;GPV=1;SPV=0.04756;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:132,26:86,14:46,12 +chr22 11581793 . T A 0 PASS DP=242;GPV=1;SPV=0.0010021;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:108,33:54,17:54,16 +chr22 11681871 . AT A 0 PASS DP=318;GPV=1;SPV=0.035282;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:129,24:61,8:68,16 +chr22 11723034 . C T 0 PASS DP=327;GPV=1;SPV=0.045514;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:170,29:63,9:107,20 +chr22 11786618 . A G 0 PASS DP=126;GPV=1;SPV=0.043844;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:58,9:24,3:34,6 +chr22 11792346 . CTA C 0 PASS DP=65;GPV=1;SPV=0.00031414;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:15,9:5,4 +chr22 11794198 . G A 0 PASS DP=362;GPV=1;SPV=0.0037187;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:176,21:79,10:97,11 +chr22 11863677 . C T 0 PASS DP=398;GPV=1;SPV=0.0072569;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:213:187,26:103,15:84,11 +chr22 11879766 . T A 0 PASS DP=976;GPV=1;SPV=0.036518;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:541:469,72:283,42:186,30 +chr22 11903218 . ATATAT A 0 PASS DP=29;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,4:5,3:2,1 +chr22 11909680 . A T 0 PASS DP=352;GPV=1;SPV=0.0010556;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:164,36:101,15:63,21 +chr22 11929057 . C T 0 PASS DP=969;GPV=1;SPV=0.022939;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:522:467,55:249,31:218,24 +chr22 11930912 . A C 0 PASS DP=951;GPV=1;SPV=0.044041;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:513:454,59:233,29:221,30 +chr22 11932496 . T C 0 PASS DP=676;GPV=1;SPV=0.044802;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:360:319,41:130,17:189,24 +chr22 11932569 . G A 0 PASS DP=625;GPV=1;SPV=0.031177;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:317:277,40:124,23:153,17 +chr22 11936610 . G A 0 PASS DP=405;GPV=1;SPV=0.027745;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:229:199,30:77,7:122,23 +chr22 11937738 . C T 0 PASS DP=228;GPV=1;SPV=0.0085398;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:94,26:37,4:57,22 +chr22 11942202 . C T 0 PASS DP=445;GPV=1;SPV=0.039894;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:210,29:82,20:128,9 +chr22 11946259 . T C 0 PASS DP=148;GPV=1;SPV=0.0058279;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:66,10:33,4:33,6 +chr22 11946261 . C T 0 PASS DP=152;GPV=1;SPV=0.0040059;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:69,11:31,5:38,6 +chr22 11976519 . C T 0 PASS DP=114;GPV=1;SPV=0.019883;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:28,9:21,1 +chr22 11976540 . C T 0 PASS DP=115;GPV=1;SPV=0.008073;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:33,11:18,2 +chr22 12033461 . A C 0 PASS DP=614;GPV=1;SPV=0.029847;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:334:300,34:150,21:150,13 +chr22 12050597 . A T 0 PASS DP=544;GPV=1;SPV=0.016893;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:322:285,37:127,19:158,18 +chr22 12055207 . T G 0 PASS DP=357;GPV=1;SPV=0.036506;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:165,26:80,15:85,11 +chr22 12061675 . G A 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:0,0:10,4 +chr22 12088780 . CTT C 0 PASS DP=319;GPV=1;SPV=0.022509;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:171:153,18:83,10:70,8 +chr22 12142166 . A T 0 PASS DP=203;GPV=1;SPV=0.025642;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:91,13:37,6:54,7 +chr22 12152516 . G A 0 PASS DP=107;GPV=1;SPV=0.045548;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:49,12:28,7:21,5 +chr22 12166049 . G A 0 PASS DP=113;GPV=1;SPV=0.021333;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:32,6:11,4 +chr22 12185462 . G T 0 PASS DP=462;GPV=1;SPV=0.038331;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:250:216,34:112,17:104,17 +chr22 12195493 . A C 0 PASS DP=335;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:168,19:73,15:95,4 +chr22 12203053 . A C 0 PASS DP=440;GPV=1;SPV=0.011802;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:259:214,45:139,13:75,32 +chr22 12208373 . T C 0 PASS DP=263;GPV=1;SPV=0.02796;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:115,27:40,9:75,18 +chr22 12220167 . T C 0 PASS DP=442;GPV=1;SPV=0.047508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:207,26:121,14:86,12 +chr22 12308408 . G T 0 PASS DP=105;GPV=1;SPV=0.04336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:18,1:29,8 +chr22 12309863 . G T 0 PASS DP=214;GPV=1;SPV=0.02033;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:103,13:61,11:42,2 +chr22 12318474 . C T 0 PASS DP=50;GPV=1;SPV=0.0012208;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:7,6:9,9 +chr22 12367917 . C T 0 PASS DP=190;GPV=1;SPV=0.00052148;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:74,27:30,11:44,16 +chr22 12414131 . T G 0 PASS DP=226;GPV=1;SPV=0.0080936;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:135:106,29:44,15:62,14 +chr22 12414141 . T C 0 PASS DP=231;GPV=1;SPV=0.0039034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:108,32:44,15:64,17 +chr22 12621815 . A G 0 PASS DP=432;GPV=1;SPV=0.012537;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:242:217,25:105,18:112,7 +chr22 12622715 . CAT C 0 PASS DP=269;GPV=1;SPV=0.01243;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:125,15:58,6:67,9 +chr22 12704191 . A C 0 PASS DP=264;GPV=1;SPV=0.018695;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:142:114,28:48,14:66,14 +chr22 12717397 . T A 0 PASS DP=417;GPV=1;SPV=0.029457;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:230:199,30:91,4:108,26 +chr22 12721141 . G A 0 PASS DP=230;GPV=1;SPV=0.0064155;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:129:101,28:36,18:65,10 +chr22 12721329 . C T 0 PASS DP=344;GPV=1;SPV=0.020704;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:163,33:104,17:59,16 +chr22 12725414 . T A 0 PASS DP=200;GPV=1;SPV=0.030986;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:83,20:49,13:34,7 +chr22 12783586 . A G 0 PASS DP=177;GPV=1;SPV=0.041242;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:76,15:34,5:42,10 +chr22 12807090 . G T 0 PASS DP=311;GPV=1;SPV=0.006667;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:149,22:75,10:74,12 +chr22 12811984 . A C 0 PASS DP=238;GPV=1;SPV=0.039103;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:117,16:54,10:63,6 +chr22 12874391 . C T 0 PASS DP=232;GPV=1;SPV=0.018876;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:116,14:1,1:115,13 +chr22 12899067 . A AAG 0 PASS DP=170;GPV=1;SPV=0.0096207;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:80,22:9,2:71,20 +chr22 12899086 . C T 0 PASS DP=169;GPV=1;SPV=0.016357;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:79,23:10,2:69,21 +chr22 15246055 . G A 0 PASS DP=61;GPV=1;SPV=0.010276;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:18,3:10,5 +chr22 15328198 . C T 0 PASS DP=105;GPV=1;SPV=0.044843;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:26,6:20,5 +chr22 15362633 . G T 0 PASS DP=86;GPV=1;SPV=0.0054483;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:30,4:11,5 +chr22 15375380 . A G 0 PASS DP=106;GPV=1;SPV=0.015007;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:32,8:27,1 +chr22 15493116 . TTTTATTTA T 0 PASS DP=38;GPV=1;SPV=0.01404;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:6,1:8,5 +chr22 15522715 . A G 0 PASS DP=76;GPV=1;SPV=0.037221;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:21,8:13,3 +chr22 15541395 . T C 0 PASS DP=216;GPV=1;SPV=0.030268;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:98,19:51,9:47,10 +chr22 15561011 . A G 0 PASS DP=115;GPV=1;SPV=0.037527;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:52,15:23,2:29,13 +chr22 15646529 . GA G 0 PASS DP=179;GPV=1;SPV=0.0033681;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:67,18:43,10:24,8 +chr22 15724758 . C T 0 PASS DP=327;GPV=1;SPV=0.047029;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:147,28:85,15:62,13 +chr22 15781692 . C T 0 PASS DP=155;GPV=1;SPV=0.0032617;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:69,11:38,7:31,4 +chr22 15792412 . C A 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:2,1:10,3 +chr22 15811856 . C T 0 PASS DP=45;GPV=1;SPV=0.031652;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,1:9,8 +chr22 15813627 . A T 0 PASS DP=148;GPV=1;SPV=0.038366;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:49,8:23,2 +chr22 15851023 . T C 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr22 15890034 . C T 0 PASS DP=26;GPV=1;SPV=0.014047;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:2,3:4,1 +chr22 15941887 . C G 0 PASS DP=162;GPV=1;SPV=0.019626;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:65,18:59,17:6,1 +chr22 15941905 . C G 0 PASS DP=170;GPV=1;SPV=0.014796;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:69,19:64,18:5,1 +chr22 15948114 . T C 0 PASS DP=229;GPV=1;SPV=0.0090593;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:97,27:52,14:45,13 +chr22 16071022 . T C 0 PASS DP=21;GPV=1;SPV=0.014757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,2:2,5 +chr22 16149178 . G T 0 PASS DP=104;GPV=1;SPV=2.8187e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:43,17:20,8:23,9 +chr22 16255232 . C A 0 PASS DP=108;GPV=1;SPV=0.00049344;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:41,21:25,15:16,6 +chr22 16358075 . C CTGGAATGGAATGGAATGGAA 0 PASS DP=63;GPV=1;SPV=0.023399;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,7:11,3 +chr22 16451280 . C T 0 PASS DP=298;GPV=1;SPV=0.036095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:148,18:101,14:47,4 +chr22 16545715 . G A 0 PASS DP=68;GPV=1;SPV=0.048152;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:21,4:12,1 +chr22 16558256 . G GGCCAGCCAA 0 PASS DP=74;GPV=1;SPV=0.012849;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,14:14,4:15,10 +chr22 16772010 . C T 0 PASS DP=29;GPV=1;SPV=0.012694;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,14:5,12:2,2 +chr22 17710067 . T TAA 0 PASS DP=54;GPV=1;SPV=0.03177;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:12,5:7,4 +chr22 18172991 . G A 0 PASS DP=111;GPV=1;SPV=0.018829;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:18,7:23,7 +chr22 18357235 . C A 0 PASS DP=188;GPV=1;SPV=0.043095;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:79,14:34,8:45,6 +chr22 18501462 . C T 0 PASS DP=41;GPV=1;SPV=0.027524;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,6:9,2 +chr22 18551852 . C T 0 PASS DP=67;GPV=1;SPV=0.01699;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:10,2:16,9 +chr22 18775887 . G A 0 PASS DP=141;GPV=1;SPV=0.01;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:37,1:21,7 +chr22 18856566 . G A 0 PASS DP=98;GPV=1;SPV=0.015096;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:20,1:24,5 +chr22 18864091 . C T 0 PASS DP=96;GPV=1;SPV=0.014772;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:13,5:23,4 +chr22 20201442 . T C 0 PASS DP=34;GPV=1;SPV=0.17857;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:2,3:0,0:2,3 +chr22 21023436 . C T 0 PASS DP=109;GPV=1;SPV=0.0078472;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:21,4:23,2 +chr22 21123786 . C A 0 PASS DP=77;GPV=1;SPV=0.048804;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,3:15,1 +chr22 21129361 . G C 0 PASS DP=225;GPV=1;SPV=0.038397;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:108,26:66,14:42,12 +chr22 21160939 . C CA 0 PASS DP=89;GPV=1;SPV=0.0069435;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,13:22,10:5,3 +chr22 21183055 . A G 0 PASS DP=44;GPV=1;SPV=0.17496;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:23,4:2,0 +chr22 21194980 . T C 0 PASS DP=114;GPV=1;SPV=0.0095288;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:49,9:29,8:20,1 +chr22 21199929 . A T 0 PASS DP=88;GPV=1;SPV=0.040092;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:19,2:23,6 +chr22 21256321 . A G 0 PASS DP=127;GPV=1;SPV=0.020495;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:32,6:20,5 +chr22 21276374 . G A 0 PASS DP=167;GPV=1;SPV=0.0032688;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:79,19:30,7:49,12 +chr22 21281758 . C CAA 0 PASS DP=163;GPV=1;SPV=0.038365;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:68,16:41,11:27,5 +chr22 21282567 . G A 0 PASS DP=159;GPV=1;SPV=0.037464;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:76,12:37,2:39,10 +chr22 22906108 . G T 0 PASS DP=71;GPV=1;SPV=0.0089808;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:13,4:20,4 +chr22 23916807 . A G 0 PASS DP=49;GPV=1;SPV=0.017646;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:17,3:1,2 +chr22 23937746 . A T 0 PASS DP=37;GPV=1;SPV=0.077195;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,2:7,3 +chr22 23937765 . G T 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:15,1:10,3 +chr22 23951323 . G A 0 PASS DP=82;GPV=1;SPV=0.047026;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:26,1:9,3 +chr22 25085783 . A G 0 PASS DP=45;GPV=1;SPV=0.15941;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:24,3:1,1 +chr22 26294892 . G T 0 PASS DP=75;GPV=1;SPV=0.025639;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:11,3:12,5 +chr22 26773211 . C A 0 PASS DP=72;GPV=1;SPV=0.031743;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:23,9:13,2 +chr22 27506065 . A ATTTTTTTTTT 0 PASS DP=28;GPV=1;SPV=0.023799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,6:5,1 +chr22 27769552 . A ATTTTTTTTTTTTT 0 PASS DP=24;GPV=1;SPV=0.28173;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:3,3:8,1 +chr22 29159129 . T G 0 PASS DP=48;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:15,2:9,5 +chr22 31913686 . CT C 0 PASS DP=19;GPV=1;SPV=0.021672;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr22 32213647 . TATAC T 0 PASS DP=62;GPV=1;SPV=0.0342;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,7:6,4:12,3 +chr22 32409823 . G T 0 PASS DP=68;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,4:6,2:11,2 +chr22 34423171 . C CT 0 PASS DP=71;GPV=1;SPV=0.015231;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,9:5,4:10,5 +chr22 34440931 . C T 0 PASS DP=97;GPV=1;SPV=0.00013624;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:22,10:17,3 +chr22 34729243 . C T 0 PASS DP=88;GPV=1;SPV=0.00041682;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:16,5:19,6 +chr22 35002572 . CA C 0 PASS DP=40;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:12,8:1,2 +chr22 36074155 . ATATATG A 0 PASS DP=66;GPV=1;SPV=0.087004;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:19,1:13,3 +chr22 37152929 . C CTTT 0 PASS DP=32;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:4,4:6,1 +chr22 37325753 . CTTTTTTTTTTT C 0 PASS DP=26;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:2,5:3,1 +chr22 38550946 . A G 0 PASS DP=57;GPV=1;SPV=0.10359;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,2:11,2 +chr22 39057005 . G GTTT 0 PASS DP=37;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:4,4:4,2 +chr22 39110577 . G A 0 PASS DP=80;GPV=1;SPV=0.019973;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:12,2:19,5 +chr22 40075154 . A ATT 0 PASS DP=35;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:11,3:8,1 +chr22 40164779 . GTT G 0 PASS DP=48;GPV=1;SPV=0.00098508;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,9:0,6:1,3 +chr22 40586903 . GTGC G 0 PASS DP=80;GPV=1;SPV=0.018872;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:20,3:16,3 +chr22 41039446 . TA T 0 PASS DP=63;GPV=1;SPV=0.031685;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:11,4:19,2 +chr22 41187130 . CA C 0 PASS DP=42;GPV=1;SPV=0.023376;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,8:4,7:7,1 +chr22 41649139 . A AAAAAAAATATATATATATATAT 0 PASS DP=40;GPV=1;SPV=0.041455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:7,1:7,3 +chr22 41649160 . A G 0 PASS DP=52;GPV=1;SPV=0.0054797;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:10,5:12,4 +chr22 42982888 . A C 0 PASS DP=35;GPV=1;SPV=0.045968;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,3:11,3 +chr22 43281460 . C CTTT 0 PASS DP=39;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:8,2:6,2 +chr22 43281461 . A G 0 PASS DP=35;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:7,4:6,2 +chr22 43344508 . G GCA 0 PASS DP=73;GPV=1;SPV=0.029194;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,9:18,8:4,1 +chr22 45321847 . C G 0 PASS DP=92;GPV=1;SPV=0.0059888;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,10:29,4:18,6 +chr22 45670438 . CTT C 0 PASS DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,1:4,4 +chr22 46628577 . A G 0 PASS DP=49;GPV=1;SPV=0.042462;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:20,4:4,2 +chr22 47425042 . A ATCTCTCTCTCTC 0 PASS DP=45;GPV=1;SPV=0.015968;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,8:1,3:11,5 +chr22 47822489 . T A 0 PASS DP=114;GPV=1;SPV=0.00016147;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:28,2:18,10 +chr22 48414872 . C T 0 PASS DP=80;GPV=1;SPV=0.013151;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:14,6:19,6 +chr22 48493497 . G A 0 PASS DP=104;GPV=1;SPV=4.2021e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:22,7:11,11 +chr22 48661949 . T TG 0 PASS DP=59;GPV=1;SPV=0.115;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:20,4:14,1 +chr22 48736261 . G C 0 PASS DP=39;GPV=1;SPV=0.0032318;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:8,8:3,3 +chr22 48926645 . C T 0 PASS DP=27;GPV=1;SPV=0.017544;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:0,1:6,4 +chr22 48942477 . T C 0 PASS DP=92;GPV=1;SPV=0.038776;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:20,2:24,3 +chr22 49071003 . C T 0 PASS DP=29;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:2,1:4,3 +chr22 49981606 . A C 0 PASS DP=67;GPV=1;SPV=0.13742;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,4:18,2:6,2 +chr22 50397790 . T TCC 0 PASS DP=37;GPV=1;SPV=0.027557;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,4:1,0 +chr3 539552 . C A 0 PASS DP=119;GPV=1;SPV=2.9334e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:26,11:20,3 +chr3 594638 . C A 0 PASS DP=99;GPV=1;SPV=8.3492e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:35,21:19,9:16,12 +chr3 760398 . C T 0 PASS DP=56;GPV=1;SPV=0.047242;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:12,2:13,6 +chr3 2798074 . C T 0 PASS DP=63;GPV=1;SPV=0.089726;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:18,2:19,4 +chr3 4456773 . C CGTGTAT 0 PASS DP=73;GPV=1;SPV=0.026963;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,7:10,3:16,4 +chr3 4457038 . GTATATATATATACGTGTGTGTATATATATATATATACGTGTGTGTA G 0 PASS DP=64;GPV=1;SPV=0.12945;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:18,3:17,1 +chr3 7928613 . A G 0 PASS DP=60;GPV=1;SPV=0.011853;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:15,4:8,10 +chr3 7928614 . A G 0 PASS DP=55;GPV=1;SPV=0.015065;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,4:9,8 +chr3 9556782 . A G 0 PASS DP=68;GPV=1;SPV=0.040958;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:17,7:13,5 +chr3 12095535 . G A 0 PASS DP=24;GPV=1;SPV=0.094203;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:1,3:9,1 +chr3 13682097 . T C 0 PASS DP=86;GPV=1;SPV=0.0223;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:12,8:19,2 +chr3 15446818 . C CAAAA 0 PASS DP=50;GPV=1;SPV=0.062192;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,6:9,5:8,1 +chr3 17943713 . C A 0 PASS DP=104;GPV=1;SPV=2.4942e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:22,7:18,8 +chr3 18853399 . T C 0 PASS DP=96;GPV=1;SPV=4.4921e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:19,10:20,6 +chr3 21143522 . T TATATAA 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr3 22541399 . C CATATACACACATATGTGTACAT 0 PASS DP=69;GPV=1;SPV=0.039984;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,10:14,6:12,4 +chr3 23328661 . TC T 0 PASS DP=74;GPV=1;SPV=0.055024;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:28,4:12,2 +chr3 23921570 . GT G 0 PASS DP=58;GPV=1;SPV=0.00098502;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:12,13:8,2 +chr3 23921574 . T G 0 PASS DP=64;GPV=1;SPV=0.0022239;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:8,13:14,3 +chr3 25849097 . C T 0 PASS DP=91;GPV=1;SPV=1.3678e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:20,11:15,7 +chr3 27902453 . AT A 0 PASS DP=35;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,2:6,3 +chr3 27916234 . T G 0 PASS DP=60;GPV=1;SPV=0.048274;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:17,5:16,2 +chr3 28865466 . CCT C 0 PASS DP=65;GPV=1;SPV=0.10299;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:14,1:23,4 +chr3 30172443 . TGA T 0 PASS DP=83;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,4:10,2:18,2 +chr3 30509594 . T C 0 PASS DP=86;GPV=1;SPV=0.002901;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:15,2:25,8 +chr3 32938730 . G T 0 PASS DP=83;GPV=1;SPV=0.012825;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,10:15,2:7,8 +chr3 33113157 . G GA 0 PASS DP=56;GPV=1;SPV=0.0091169;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:18,4:3,2 +chr3 34543707 . C G 0 PASS DP=88;GPV=1;SPV=0.00010498;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:18,11:17,3 +chr3 34705068 . A ATAT 0 PASS DP=50;GPV=1;SPV=0.022424;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:9,8:11,1 +chr3 34705070 . T A 0 PASS DP=49;GPV=1;SPV=0.014937;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:9,8:10,2 +chr3 36398591 . A G 0 PASS DP=29;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,4:5,1 +chr3 37004861 . A G 0 PASS DP=99;GPV=1;SPV=0.00029634;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:18,4:21,7 +chr3 38161250 . ATATATTTCATG A 0 PASS DP=114;GPV=1;SPV=0.029223;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,11:26,7:28,4 +chr3 38949519 . C A 0 PASS DP=99;GPV=1;SPV=5.5261e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:23,5:17,10 +chr3 39169713 . AGAAG A 0 PASS DP=35;GPV=1;SPV=0.023537;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,5:5,4:2,1 +chr3 41123103 . C A 0 PASS DP=101;GPV=1;SPV=7.7811e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:20,6:19,7 +chr3 42272301 . C T 0 PASS DP=109;GPV=1;SPV=2.6976e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:40,18:18,9:22,9 +chr3 43016925 . G A 0 PASS DP=73;GPV=1;SPV=0.016558;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:18,3:17,4 +chr3 43580142 . C CA 0 PASS DP=53;GPV=1;SPV=0.036288;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:15,2:5,2 +chr3 44405951 . CA C 0 PASS DP=52;GPV=1;SPV=0.014318;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,9:10,7:3,2 +chr3 46161710 . A AT 0 PASS DP=40;GPV=1;SPV=0.090728;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:11,2:10,4 +chr3 49790111 . TTCTCTCTC T 0 PASS DP=42;GPV=1;SPV=0.038306;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:4,3:12,3 +chr3 50016829 . T G 0 PASS DP=60;GPV=1;SPV=0.089909;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:13,3:16,1 +chr3 50946094 . T TA 0 PASS DP=30;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:5,4:4,2 +chr3 50975454 . G C 0 PASS DP=65;GPV=1;SPV=0.024549;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:12,10:15,2 +chr3 51016122 . G GAT 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,4:4,1 +chr3 51760324 . G A 0 PASS DP=74;GPV=1;SPV=0.0046387;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:18,4:11,3 +chr3 54547672 . CT C 0 PASS DP=43;GPV=1;SPV=0.0033618;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,10:6,3:1,7 +chr3 54918336 . T C 0 PASS DP=50;GPV=1;SPV=0.020817;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,7:11,6:6,1 +chr3 55003739 . G A 0 PASS DP=97;GPV=1;SPV=0.0037149;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:19,4:23,4 +chr3 55368311 . CCACA C 0 PASS DP=48;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:13,8:3,2 +chr3 55651038 . T TG 0 PASS DP=71;GPV=1;SPV=0.0041072;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,11:9,2:9,9 +chr3 57959637 . T C 0 PASS DP=92;GPV=1;SPV=0.019611;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:23,3:20,3 +chr3 58386290 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,6:3,4:3,2 +chr3 59082428 . TATA T 0 PASS DP=27;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:3,2:6,4 +chr3 60058130 . GT G 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,1:4,3 +chr3 60206152 . T A 0 PASS DP=66;GPV=1;SPV=0.049205;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:17,5:20,2 +chr3 60418374 . GTGTATATA G 0 PASS DP=32;GPV=1;SPV=0.014569;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,6:1,5:0,1 +chr3 60418426 . A G 0 PASS DP=25;GPV=1;SPV=0.013387;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:1,1:7,6 +chr3 60859723 . ATTTTTTTTTTT A 0 PASS DP=30;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:9,3:4,1 +chr3 60860722 . G A 0 PASS DP=56;GPV=1;SPV=0.020146;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:9,3:10,6 +chr3 62005690 . CTTT C 0 PASS DP=29;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,6:5,2 +chr3 62750353 . C CA 0 PASS DP=41;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:9,8:5,7:4,1 +chr3 62847576 . A C 0 PASS DP=22;GPV=1;SPV=0.010394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:0,1:4,7 +chr3 62855091 . A ATTTTTTTTTTTTT 0 PASS DP=32;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:6,1:5,3 +chr3 64475229 . C T 0 PASS DP=99;GPV=1;SPV=3.9759e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:17,9:18,8 +chr3 65929402 . G A 0 PASS DP=97;GPV=1;SPV=0.0012029;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:25,7:19,4 +chr3 66095020 . T TC 0 PASS DP=32;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,4:9,2:6,2 +chr3 67265479 . T A 0 PASS DP=104;GPV=1;SPV=0.018065;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:22,1:23,7 +chr3 67838857 . G A 0 PASS DP=88;GPV=1;SPV=3.0224e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:16,12:14,6 +chr3 67911386 . T A 0 PASS DP=97;GPV=1;SPV=0.0044491;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:23,4:23,5 +chr3 68076855 . C T 0 PASS DP=131;GPV=1;SPV=0.04767;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:32,1:18,7 +chr3 68444771 . A AATAT 0 PASS DP=55;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,9:7,3:5,6 +chr3 68760215 . G A 0 PASS DP=80;GPV=1;SPV=0.00061221;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:18,3:17,10 +chr3 68760216 . A T 0 PASS DP=83;GPV=1;SPV=0.0016391;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:22,3:17,9 +chr3 69263817 . C CT 0 PASS DP=25;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,4:2,2:3,2 +chr3 69477359 . A AT 0 PASS DP=62;GPV=1;SPV=0.0027151;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:9,3:12,12 +chr3 69560415 . C CTT 0 PASS DP=22;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr3 70154530 . G A 0 PASS DP=81;GPV=1;SPV=0.00083722;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:12,5:22,6 +chr3 72045562 . CTATAA C 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:3,5:5,1 +chr3 72857229 . C CA 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:25,3:11,1 +chr3 73600335 . A ACTCT 0 PASS DP=50;GPV=1;SPV=0.036782;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,5:2,1:9,4 +chr3 73734013 . C T 0 PASS DP=113;GPV=1;SPV=3.9089e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:42,23:18,16:24,7 +chr3 74210363 . C T 0 PASS DP=90;GPV=1;SPV=1.0504e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:21,6:11,10 +chr3 75155073 . G A 0 PASS DP=89;GPV=1;SPV=0.0010228;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:22,7:17,4 +chr3 75697563 . TG T 0 PASS DP=346;GPV=1;SPV=0.032276;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:150,27:71,15:79,12 +chr3 75880014 . C T 0 PASS DP=93;GPV=1;SPV=2.017e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,15:20,7:14,8 +chr3 76273403 . C T 0 PASS DP=86;GPV=1;SPV=0.00045564;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:20,5:16,7 +chr3 76682685 . C T 0 PASS DP=111;GPV=1;SPV=2.8766e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:49,19:18,6:31,13 +chr3 76760920 . C CT 0 PASS DP=68;GPV=1;SPV=0.01062;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,4:15,3 +chr3 78673605 . T C 0 PASS DP=26;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:4,1:4,3 +chr3 79023696 . GTT G 0 PASS DP=32;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:13,1:2,4 +chr3 79024828 . C A 0 PASS DP=110;GPV=1;SPV=2.6242e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:46,17:24,7:22,10 +chr3 84324433 . G T 0 PASS DP=101;GPV=1;SPV=0.00023502;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:18,6:21,5 +chr3 85568473 . C CTCTTTCTTTCTTTCTTTCTT 0 PASS DP=45;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,4:0,3:5,1 +chr3 86405125 . CTTTTTTTTT C 0 PASS DP=33;GPV=1;SPV=0.018485;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:7,6:3,5 +chr3 86596078 . G A 0 PASS DP=113;GPV=1;SPV=0.0011685;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:63,19:32,15:31,4 +chr3 86843970 . T TAAA 0 PASS DP=35;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:3,8:8,1 +chr3 86859807 . A AAT 0 PASS DP=49;GPV=1;SPV=0.24893;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,4:11,3:13,1 +chr3 86859822 . T C 0 PASS DP=56;GPV=1;SPV=0.13783;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,5:12,4:20,1 +chr3 87794982 . CT C 0 PASS DP=24;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,4:3,1 +chr3 90798808 . C G 0 PASS DP=281;GPV=1;SPV=0.0046815;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:137,19:4,1:133,18 +chr3 90805489 . C T 0 PASS DP=23;GPV=1;SPV=0.037267;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:1,3:6,1 +chr3 90831428 . A G 0 PASS DP=126;GPV=1;SPV=0.045123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:64,11:53,10:11,1 +chr3 90851104 . T C 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:1,0:20,4 +chr3 90886829 . A T 0 PASS DP=60;GPV=1;SPV=0.073744;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:27,3:1,1 +chr3 90903284 . A C 0 PASS DP=151;GPV=1;SPV=0.0022767;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:64,8:19,7:45,1 +chr3 90903489 . T C 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:18,1:11,3 +chr3 90905544 . G T 0 PASS DP=88;GPV=1;SPV=0.017926;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:9,4:25,3 +chr3 90939262 . A G 0 PASS DP=42;GPV=1;SPV=0.0027092;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,6:3,2 +chr3 90948816 . T A 0 PASS DP=195;GPV=1;SPV=0.049765;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:90,14:39,12:51,2 +chr3 90954559 . A G 0 PASS DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:0,1:31,3 +chr3 90984477 . T A 0 PASS DP=363;GPV=1;SPV=0.0024643;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:187,22:117,16:70,6 +chr3 90997507 . A G 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:0,3:17,1 +chr3 91002253 . G T 0 PASS DP=63;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,4:28,1:5,3 +chr3 91014694 . T C 0 PASS DP=71;GPV=1;SPV=0.053889;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:1,0:30,4 +chr3 91018076 . G A 0 PASS DP=288;GPV=1;SPV=0.0016556;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:160:141,19:107,17:34,2 +chr3 91018090 . C A 0 PASS DP=273;GPV=1;SPV=0.0016843;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:133,19:97,17:36,2 +chr3 91018462 . C T 0 PASS DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:1,0:35,4 +chr3 91027672 . C A 0 PASS DP=23;GPV=1;SPV=0.0074891;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:4,1:1,4 +chr3 91048782 . C T 0 PASS DP=184;GPV=1;SPV=0.0011912;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:88,22:76,20:12,2 +chr3 91069464 . C T 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,1:0,3 +chr3 91090520 . G C 0 PASS DP=147;GPV=1;SPV=0.031628;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:73,11:50,6:23,5 +chr3 91090645 . G A 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,3:13,3 +chr3 91149523 . G T 0 PASS DP=65;GPV=1;SPV=0.087004;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:0,3:32,1 +chr3 91152348 . T G 0 PASS DP=481;GPV=1;SPV=0.005532;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:244:218,26:55,4:163,22 +chr3 91177444 . A T 0 PASS DP=57;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:30,4:0,0 +chr3 91283350 . A G 0 PASS DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:26,4:6,1 +chr3 91932493 . G A 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr3 92156121 . G A 0 PASS DP=45;GPV=1;SPV=0.05384;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:3,2:18,3 +chr3 95131785 . A T 0 PASS DP=48;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,4:6,3:6,1 +chr3 96994759 . A AGAGAGC 0 PASS DP=49;GPV=1;SPV=0.041509;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,10:9,5:8,5 +chr3 99263623 . C G 0 PASS DP=20;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,3:1,1:0,2 +chr3 100135438 . ATGTG A 0 PASS DP=47;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:11,5:5,4 +chr3 100956214 . AACACACACACAC A 0 PASS DP=55;GPV=1;SPV=0.019569;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,7:12,6:8,1 +chr3 101616345 . CCTTTT C 0 PASS DP=47;GPV=1;SPV=0.014604;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:7,7:7,2 +chr3 102517213 . C CAAAAA 0 PASS DP=71;GPV=1;SPV=0.022089;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,15:16,13:12,2 +chr3 103099702 . C T 0 PASS DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:2,1:4,2 +chr3 103235162 . C T 0 PASS DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:3,2:12,2 +chr3 103490639 . CTTTT C 0 PASS DP=35;GPV=1;SPV=0.14178;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:9,4:9,1 +chr3 103750097 . C T 0 PASS DP=116;GPV=1;SPV=0.00017007;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:57,18:32,10:25,8 +chr3 104465360 . T C 0 PASS DP=104;GPV=1;SPV=0.00082723;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:20,5:26,6 +chr3 105266608 . T A 0 PASS DP=98;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:21,4:9,2:12,2 +chr3 105529504 . A T 0 PASS DP=96;GPV=1;SPV=2.1899e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:38,17:16,7:22,10 +chr3 106707337 . T A 0 PASS DP=62;GPV=1;SPV=0.10396;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,5:11,2:14,3 +chr3 108795945 . GTTTTTTT G 0 PASS DP=56;GPV=1;SPV=0.0053746;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,10:4,9:6,1 +chr3 109321582 . GT G 0 PASS DP=54;GPV=1;SPV=0.019606;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,8:10,4 +chr3 109527907 . C T 0 PASS DP=82;GPV=1;SPV=0.08744;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,4:8,2:11,2 +chr3 109906974 . GATAT G 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:12,3:3,1 +chr3 109930083 . C CCCTTCCCTCCTTCCCTCCTT 0 PASS DP=42;GPV=1;SPV=0.27439;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,3:7,2:17,1 +chr3 110172450 . C T 0 PASS DP=85;GPV=1;SPV=0.00070127;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:21,7:16,5 +chr3 110648326 . C CT 0 PASS DP=65;GPV=1;SPV=0.0097737;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,4:10,1 +chr3 112012215 . G C 0 PASS DP=33;GPV=1;SPV=0.01497;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,13:1,1:9,12 +chr3 112562096 . C A 0 PASS DP=132;GPV=1;SPV=0.0003713;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:28,5:28,6 +chr3 115537067 . TATAG T 0 PASS DP=23;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,2:6,3 +chr3 115776408 . G A 0 PASS DP=98;GPV=1;SPV=0.0034116;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:32,6:10,2 +chr3 116421443 . G A 0 PASS DP=99;GPV=1;SPV=9.7046e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:18,6:25,10 +chr3 116664364 . TAAC T 0 PASS DP=64;GPV=1;SPV=0.0083333;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:31:0,7:0,5:0,2 +chr3 117131025 . T C 0 PASS DP=96;GPV=1;SPV=0.0097133;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:44,7:20,4:24,3 +chr3 118133343 . G C 0 PASS DP=73;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:25,4:12,3 +chr3 119623721 . T C 0 PASS DP=50;GPV=1;SPV=0.047696;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:5,3:10,3 +chr3 119845421 . G A 0 PASS DP=103;GPV=1;SPV=2.5707e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,6:18,8 +chr3 120169863 . T C 0 PASS DP=96;GPV=1;SPV=0.0049041;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,4:20,5 +chr3 122430515 . A AGTGTGTGTGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:11,3:6,1 +chr3 123724139 . CTT C 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr3 124144641 . C T 0 PASS DP=77;GPV=1;SPV=0.013761;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:18,4:15,2 +chr3 124853407 . C T 0 PASS DP=96;GPV=1;SPV=1.7206e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:17,6:18,9 +chr3 131181745 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0084599;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,8:5,7:8,1 +chr3 132355509 . AT A 0 PASS DP=52;GPV=1;SPV=0.041513;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,5:5,2 +chr3 134701428 . A ATG 0 PASS DP=70;GPV=1;SPV=0.099673;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:19,1:17,3 +chr3 134860174 . C G 0 PASS DP=73;GPV=1;SPV=0.064086;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:16,3:22,2 +chr3 135738067 . A T 0 PASS DP=72;GPV=1;SPV=0.17024;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,5:11,2:19,3 +chr3 136227187 . C T 0 PASS DP=70;GPV=1;SPV=0.017643;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:16,5:14,9 +chr3 136447596 . ATTTT A 0 PASS DP=45;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,9:14,5:2,4 +chr3 136702123 . C G 0 PASS DP=67;GPV=1;SPV=0.037023;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,8:11,3:13,5 +chr3 138397587 . C T 0 PASS DP=102;GPV=1;SPV=0.00048225;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,5:20,5 +chr3 138890387 . CTCTCGCTCGCTT C 0 PASS DP=46;GPV=1;SPV=0.039259;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:2,2:14,2 +chr3 139860290 . T G 0 PASS DP=102;GPV=1;SPV=5.7843e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:19,9:24,7 +chr3 139955112 . C CTATATATATATATA 0 PASS DP=23;GPV=1;SPV=0.068627;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,4:4,3:2,1 +chr3 140518474 . G C 0 PASS DP=109;GPV=1;SPV=8.0627e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:17,6:20,8 +chr3 141636481 . G A 0 PASS DP=68;GPV=1;SPV=0.0095308;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:12,6:8,3:4,3 +chr3 142920596 . G GTGTTTT 0 PASS DP=49;GPV=1;SPV=0.019247;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:10,6:9,3 +chr3 143920646 . T TAC 0 PASS DP=62;GPV=1;SPV=0.01326;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:16,4:9,2 +chr3 143920676 . T C 0 PASS DP=57;GPV=1;SPV=0.017377;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:13,7:6,2 +chr3 143976584 . G GAGAGAGAGAA 0 PASS DP=57;GPV=1;SPV=0.030474;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,9:9,4:8,5 +chr3 144568320 . C CAA 0 PASS DP=45;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,10:7,9:4,1 +chr3 145631060 . C T 0 PASS DP=51;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:6,2:0,1:6,1 +chr3 147818553 . GA G 0 PASS DP=36;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,3:3,1 +chr3 147936619 . G A 0 PASS DP=124;GPV=1;SPV=1.9997e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:17,10:32,5 +chr3 149417090 . G A 0 PASS DP=117;GPV=1;SPV=4.8957e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:47,14:18,7:29,7 +chr3 151525002 . CTTTTTTTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr3 152644923 . T TATAGAG 0 PASS DP=62;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:2,6:2,2:0,4 +chr3 153206221 . C A 0 PASS DP=83;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,4:17,1:11,3 +chr3 153350196 . C CTCTCTGTGTGTGTGTGTG 0 PASS DP=68;GPV=1;SPV=0.0034381;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,11:9,4:9,7 +chr3 153711346 . T C 0 PASS DP=72;GPV=1;SPV=0.0035757;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:18,2:15,8 +chr3 154646137 . CT C 0 PASS DP=33;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,4:6,3:6,1 +chr3 155140410 . CTT C 0 PASS DP=44;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,8:6,2:7,6 +chr3 155237763 . C CTTTTTT 0 PASS DP=26;GPV=1;SPV=0.0026248;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,10:3,8:2,2 +chr3 155928019 . CT C 0 PASS DP=29;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,4:3,3:1,1 +chr3 157963976 . G A 0 PASS DP=84;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:17,4:6,1:11,3 +chr3 159691416 . C CT 0 PASS DP=25;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:5,4:2,3 +chr3 160674106 . G A 0 PASS DP=80;GPV=1;SPV=0.045175;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:18,3:21,2 +chr3 160771543 . C CTT 0 PASS DP=38;GPV=1;SPV=0.099099;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,3:4,1 +chr3 160976605 . G T 0 PASS DP=91;GPV=1;SPV=7.3373e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:18,9:16,4 +chr3 161369286 . TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTC T 0 PASS DP=40;GPV=1;SPV=0.051138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:11,4:7,1 +chr3 161605235 . T TTTTATATATATATATATATATA 0 PASS DP=28;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,4:3,2:3,2 +chr3 162603638 . C CT 0 PASS DP=28;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:3,5:6,1 +chr3 163040250 . TATATAG T 0 PASS DP=68;GPV=1;SPV=0.029248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:17,6:14,3 +chr3 163784956 . GT G 0 PASS DP=75;GPV=1;SPV=1.7096e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:16,17:13,12:3,5 +chr3 164011343 . C T 0 PASS DP=75;GPV=1;SPV=0.09921;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:21,1:22,4 +chr3 164765099 . CT C 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,3:7,1 +chr3 165488881 . GT G 0 PASS DP=29;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,2:4,2 +chr3 165983125 . C G 0 PASS DP=104;GPV=1;SPV=0.0045735;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:33,3:17,6 +chr3 166880502 . AATATATATT A 0 PASS DP=34;GPV=1;SPV=0.2164;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:9,3:10,1 +chr3 168568422 . G GTGTGTGTGTGTGTGGTGT 0 PASS DP=91;GPV=1;SPV=9.1446e-07;SS=2;SSC=60;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:16,20:13,9:3,11 +chr3 170285078 . C CT 0 PASS DP=46;GPV=1;SPV=0.0014958;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:13,19:8,17:5,2 +chr3 171562565 . T C 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:5,2:15,3 +chr3 171586739 . G A 0 PASS DP=87;GPV=1;SPV=0.035373;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:25,6:15,5 +chr3 171710872 . C CT 0 PASS DP=56;GPV=1;SPV=0.036439;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,18:18,16:6,2 +chr3 172623989 . A G 0 PASS DP=119;GPV=1;SPV=3.4682e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:40,31:23,13:17,18 +chr3 173978835 . A T 0 PASS DP=58;GPV=1;SPV=0.050612;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,4:4,2:8,2 +chr3 175174789 . A G 0 PASS DP=91;GPV=1;SPV=0.15567;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:33,4:19,3:14,1 +chr3 175656897 . T A 0 PASS DP=118;GPV=1;SPV=2.561e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:40,35:21,17:19,18 +chr3 177805499 . T TAAA 0 PASS DP=49;GPV=1;SPV=0.0041408;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:8,12:2,9:6,3 +chr3 180244709 . C CTT 0 PASS DP=38;GPV=1;SPV=0.22636;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,2:10,2 +chr3 180592693 . CTTTTT C 0 PASS DP=28;GPV=1;SPV=0.27607;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:10,2:6,2 +chr3 181702070 . CCA C 0 PASS DP=65;GPV=1;SPV=0.069705;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:22,2:12,3 +chr3 181957214 . A T 0 PASS DP=107;GPV=1;SPV=0.038206;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:27,6:15,1:12,5 +chr3 181976434 . C CA 0 PASS DP=40;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:11,5:6,1 +chr3 182665652 . C T 0 PASS DP=106;GPV=1;SPV=0.0026749;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:36,2:17,9 +chr3 183167172 . C CTTTT 0 PASS DP=58;GPV=1;SPV=0.028809;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,7:4,4:17,3 +chr3 183234707 . T TTTTTTTA 0 PASS DP=81;GPV=1;SPV=0.013385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,15:20,4:12,11 +chr3 183609768 . TA T 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:16,1:8,3 +chr3 184617634 . GAGA G 0 PASS DP=68;GPV=1;SPV=0.098102;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:21,1:20,5 +chr3 185091968 . T A 0 PASS DP=27;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,3:4,1 +chr3 185454379 . GATATATGAGAT G 0 PASS DP=66;GPV=1;SPV=0.029627;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,13:16,2:11,11 +chr3 185454601 . TGA T 0 PASS DP=74;GPV=1;SPV=0.00065651;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,4:12,9 +chr3 185454626 . G T 0 PASS DP=70;GPV=1;SPV=0.0082759;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,5:14,8 +chr3 185455148 . T A 0 PASS DP=57;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:19,2:10,2 +chr3 185455151 . G T 0 PASS DP=62;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:19,2:12,2 +chr3 185638985 . CAA C 0 PASS DP=50;GPV=1;SPV=0.17119;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,8:13,6:7,2 +chr3 186786051 . T G 0 PASS DP=94;GPV=1;SPV=4.2601e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:33,25:10,14:23,11 +chr3 187856602 . G GT 0 PASS DP=103;GPV=1;SPV=2.4148e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:42,17:25,14:17,3 +chr3 188142523 . GAAGA G 0 PASS DP=51;GPV=1;SPV=0.00082127;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,9:8,1 +chr3 188524881 . TTCCTTCCTTCCGTCCG T 0 PASS DP=49;GPV=1;SPV=0.0084177;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:2,5:15,5 +chr3 188638313 . AG A 0 PASS DP=59;GPV=1;SPV=0.014646;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3 +chr3 188770347 . T C 0 PASS DP=40;GPV=1;SPV=0.020196;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:7,2:7,3 +chr3 189966137 . AAG A 0 PASS DP=72;GPV=1;SPV=0.030805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:26,6:12,1 +chr3 191632973 . C T 0 PASS DP=112;GPV=1;SPV=0.0011102;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:27,9:22,1 +chr3 191875373 . CTT C 0 PASS DP=50;GPV=1;SPV=0.026352;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,10:9,5:11,5 +chr3 193596361 . CTTAA C 0 PASS DP=51;GPV=1;SPV=0.15731;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:8,1:17,2 +chr3 195290848 . A T 0 PASS DP=104;GPV=1;SPV=0.03708;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:51,17:33,15:18,2 +chr3 195482567 . G C 0 PASS DP=59;GPV=1;SPV=0.069135;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,2:8,2 +chr3 195487256 . C G 0 PASS DP=97;GPV=1;SPV=0.038826;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:46,15:33,13:13,2 +chr3 195487534 . G T 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:17,4:18,1 +chr3 195489437 . T A 0 PASS DP=154;GPV=1;SPV=0.011845;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:82,22:34,3:48,19 +chr3 195622600 . C A 0 PASS DP=104;GPV=1;SPV=0.013931;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:42,8:7,2 +chr3 195698193 . C T 0 PASS DP=142;GPV=1;SPV=0.02706;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:65,15:33,9:32,6 +chr3 195719427 . CTTT C 0 PASS DP=176;GPV=1;SPV=0.0099771;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:5,7:1,4:4,3 +chr3 195816817 . T TGCCCA 0 PASS DP=49;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,4:8,1:16,3 +chr3 195978090 . C T 0 PASS DP=275;GPV=1;SPV=0.0068093;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:135,21:71,11:64,10 +chr3 196037653 . C CAAAAA 0 PASS DP=57;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,7:9,6:6,1 +chr3 196052292 . C CT 0 PASS DP=39;GPV=1;SPV=0.10722;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,4:10,2 +chr3 196346919 . C CTTTTTTTTTTTT 0 PASS DP=47;GPV=1;SPV=0.080042;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,4:13,3:5,1 +chr3 196910335 . CT C 0 PASS DP=20;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:6,3:1,1 +chr3 196949037 . T TC 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3 +chr3 197459525 . A G 0 PASS DP=18;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:2,1:4,1 +chr3 197624815 . C T 0 PASS DP=126;GPV=1;SPV=0.010631;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:29,3:33,8 +chr4 15464 . G C 0 PASS DP=225;GPV=1;SPV=0.018837;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:89,21:62,9:27,12 +chr4 20957 . T C 0 PASS DP=259;GPV=1;SPV=0.033085;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:100,19:72,14:28,5 +chr4 24734 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr4 34973 . A T 0 PASS DP=229;GPV=1;SPV=0.032843;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:103,18:52,11:51,7 +chr4 450958 . T A 0 PASS DP=35;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,4:2,3:1,1 +chr4 1906654 . C CT 0 PASS DP=29;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2 +chr4 3198215 . AT A 0 PASS DP=45;GPV=1;SPV=0.024875;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:13,5:2,5 +chr4 3788247 . C T 0 PASS DP=107;GPV=1;SPV=3.9178e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:40,25:25,12:15,13 +chr4 4082660 . T TCACACACACACACACACACACACA 0 PASS DP=64;GPV=1;SPV=0.029276;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:9,4:14,2 +chr4 4606615 . ATTT A 0 PASS DP=37;GPV=1;SPV=0.016565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,1:9,6 +chr4 7115598 . G T 0 PASS DP=61;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,4:18,3:9,1 +chr4 7566015 . G A 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,3:9,2 +chr4 8263816 . G C 0 PASS DP=71;GPV=1;SPV=0.051471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:4,3:2,2:2,1 +chr4 8630136 . C T 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:19,4:1,0 +chr4 8652924 . C T 0 PASS DP=120;GPV=1;SPV=5.454e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:54,17:31,9:23,8 +chr4 8692329 . T C 0 PASS DP=92;GPV=1;SPV=0.027874;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:24,4:17,1 +chr4 9090052 . C CA 0 PASS DP=53;GPV=1;SPV=0.025971;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:11,6:4,1 +chr4 9140304 . CA C 0 PASS DP=39;GPV=1;SPV=0.0062652;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,4:4,3 +chr4 9981256 . T G 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:1,1:6,7 +chr4 11565730 . AC A 0 PASS DP=22;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,2:0,1:5,1 +chr4 12428449 . C CTT 0 PASS DP=44;GPV=1;SPV=0.0076326;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,11:7,7:6,4 +chr4 14834044 . G A 0 PASS DP=92;GPV=1;SPV=0.018064;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:16,6:19,8 +chr4 15664550 . CTT C 0 PASS DP=33;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,1:11,4 +chr4 16816407 . C CT 0 PASS DP=42;GPV=1;SPV=0.045366;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:12,9:6,2 +chr4 17035717 . G A 0 PASS DP=100;GPV=1;SPV=0.00041767;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:26,5:17,7 +chr4 17154514 . G GTTCTTT 0 PASS DP=56;GPV=1;SPV=0.0051634;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,15:10,11:8,4 +chr4 17392769 . GA G 0 PASS DP=47;GPV=1;SPV=0.17641;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:20,3:7,1 +chr4 17696172 . T C 0 PASS DP=88;GPV=1;SPV=0.0005289;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:11,5:28,8 +chr4 18160746 . CT C 0 PASS DP=42;GPV=1;SPV=0.022726;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:8,6:7,2 +chr4 18207818 . T A 0 PASS DP=94;GPV=1;SPV=0.0011693;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:21,5:23,7 +chr4 18277327 . C CAA 0 PASS DP=36;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,10:7,8:1,2 +chr4 19259011 . C A 0 PASS DP=79;GPV=1;SPV=1.9322e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:19,11:9,5 +chr4 20211807 . A T 0 PASS DP=76;GPV=1;SPV=0.044785;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:18,6:18,2 +chr4 20716612 . C T 0 PASS DP=77;GPV=1;SPV=1.9388e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,5:11,8 +chr4 22084117 . G T 0 PASS DP=98;GPV=1;SPV=0.0010978;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:22,6:24,6 +chr4 22815365 . ATATATATATATATATATATTTTTTTTTTTTTTTT A 0 PASS DP=27;GPV=1;SPV=0.12121;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,5:1,3:2,2 +chr4 23603769 . TTG T 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,2:20,2 +chr4 24726335 . C CTT 0 PASS DP=39;GPV=1;SPV=0.0029195;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,11:11,10:2,1 +chr4 25444486 . G GTT 0 PASS DP=33;GPV=1;SPV=0.017473;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:7,2:2,2 +chr4 26316502 . TATATATTC T 0 PASS DP=69;GPV=1;SPV=0.041596;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:19,3:9,1 +chr4 27501814 . G T 0 PASS DP=87;GPV=1;SPV=0.00047924;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:20,6:13,4 +chr4 27781760 . T A 0 PASS DP=98;GPV=1;SPV=4.7366e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:18,8:21,7 +chr4 27837405 . G T 0 PASS DP=101;GPV=1;SPV=0.00074812;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:19,8:27,4 +chr4 28397577 . G GT 0 PASS DP=83;GPV=1;SPV=0.047026;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,1:13,3 +chr4 28725976 . G A 0 PASS DP=92;GPV=1;SPV=0.022472;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,5:16,1:18,4 +chr4 28933105 . CAA C 0 PASS DP=44;GPV=1;SPV=0.031264;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,6:7,5:5,1 +chr4 29036293 . T TAG 0 PASS DP=48;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,10:8,4 +chr4 29055438 . G A 0 PASS DP=93;GPV=1;SPV=0.0030877;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:16,5:23,3 +chr4 29514900 . G A 0 PASS DP=95;GPV=1;SPV=0.00011761;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:18,5:21,9 +chr4 31368449 . C CCTCTCTCTCT 0 PASS DP=30;GPV=1;SPV=0.21504;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,3:3,2:7,1 +chr4 32154568 . CTTTTT C 0 PASS DP=38;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,9:9,8:2,1 +chr4 32793744 . C CAAAA 0 PASS DP=59;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,9:14,8:8,1 +chr4 32856257 . CTTT C 0 PASS DP=80;GPV=1;SPV=0.037745;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,5:20,3:17,2 +chr4 32862019 . ATTTT A 0 PASS DP=67;GPV=1;SPV=0.034373;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:13,2:11,2 +chr4 35953472 . A C 0 PASS DP=55;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:7,2:4,1:3,1 +chr4 36713372 . C CTT 0 PASS DP=56;GPV=1;SPV=0.026985;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,8:6,1 +chr4 37348581 . CTTTT C 0 PASS DP=32;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:1,6:5,2 +chr4 37774975 . G C 0 PASS DP=111;GPV=1;SPV=0.011371;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:53,7:30,4:23,3 +chr4 37777168 . T G 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,2:17,2 +chr4 39297302 . G T 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1 +chr4 39793488 . TCCTTTC T 0 PASS DP=72;GPV=1;SPV=0.036334;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:19,2:20,5 +chr4 39793511 . C T 0 PASS DP=87;GPV=1;SPV=0.0028438;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:20,5:16,7 +chr4 40045853 . C CA 0 PASS DP=45;GPV=1;SPV=0.026993;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,9:10,8:5,1 +chr4 40405377 . G A 0 PASS DP=101;GPV=1;SPV=7.4138e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:18,6:24,9 +chr4 43384910 . T A 0 PASS DP=29;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,3:4,3 +chr4 44282396 . G A 0 PASS DP=90;GPV=1;SPV=0.0007003;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:25,4:13,7 +chr4 46348939 . A T 0 PASS DP=81;GPV=1;SPV=0.011661;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:32,6:10,3 +chr4 47195456 . T TAGA 0 PASS DP=61;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:0,2:0,1:0,1 +chr4 48092553 . TGGACACATTTTTCCAAAAGTGTGACTTACAAGAGCAATGTGTAAAGGGAGAAAGAGTTAGGGCAGCA T 0 PASS DP=58;GPV=1;SPV=0.064593;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:12,2:14,2 +chr4 49102880 . A ATTCCT 0 PASS DP=106;GPV=1;SPV=0.021398;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,6:24,2:26,4 +chr4 49117668 . ACCATT A 0 PASS DP=122;GPV=1;SPV=0.048559;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,6:27,2:21,4 +chr4 49161694 . C T 0 PASS DP=278;GPV=1;SPV=0.018289;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:146:122,24:53,13:69,11 +chr4 49173848 . G A 0 PASS DP=131;GPV=1;SPV=0.0098093;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:71,9:41,1:30,8 +chr4 49235503 . T C 0 PASS DP=181;GPV=1;SPV=0.049851;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:77,18:43,13:34,5 +chr4 49237120 . G C 0 PASS DP=212;GPV=1;SPV=0.024925;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:83,20:33,8:50,12 +chr4 49237791 . CACTTAAA C 0 PASS DP=109;GPV=1;SPV=0.037423;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:27,2:21,7 +chr4 49246131 . C A 0 PASS DP=402;GPV=1;SPV=0.0056713;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:229:201,28:145,19:56,9 +chr4 49249561 . C T 0 PASS DP=366;GPV=1;SPV=0.032859;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:168,32:94,23:74,9 +chr4 49252795 . C T 0 PASS DP=577;GPV=1;SPV=0.04704;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:292:260,32:152,21:108,11 +chr4 49256477 . T A 0 PASS DP=426;GPV=1;SPV=0.0033633;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:178,37:91,25:87,12 +chr4 49257937 . T A 0 PASS DP=413;GPV=1;SPV=0.023553;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:192,29:86,15:106,14 +chr4 49264667 . GTGTT G 0 PASS DP=614;GPV=1;SPV=0.0099073;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:342:243,46:159,17:84,29 +chr4 49266327 . AT A 0 PASS DP=712;GPV=1;SPV=0.0051943;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:406:349,54:165,15:184,39 +chr4 49292267 . G A 0 PASS DP=264;GPV=1;SPV=0.0096171;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:124,19:69,6:55,13 +chr4 49498308 . T C 0 PASS DP=108;GPV=1;SPV=0.045686;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:19,1:27,5 +chr4 49519369 . C T 0 PASS DP=191;GPV=1;SPV=0.028218;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:94,13:54,8:40,5 +chr4 49519466 . TA T 0 PASS DP=155;GPV=1;SPV=0.035166;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:65,17:42,9:23,8 +chr4 49554189 . C CA 0 PASS DP=241;GPV=1;SPV=0.0068684;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:118,16:58,7:60,9 +chr4 49556231 . G T 0 PASS DP=116;GPV=1;SPV=0.029547;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:49,11:30,8:19,3 +chr4 49558512 . T C 0 PASS DP=124;GPV=1;SPV=0.012898;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:53,20:26,9:27,11 +chr4 49579191 . C T 0 PASS DP=230;GPV=1;SPV=0.034495;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:108,22:27,7:81,15 +chr4 49591746 . G A 0 PASS DP=303;GPV=1;SPV=0.0043003;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:140,32:94,21:46,11 +chr4 49591755 . G C 0 PASS DP=317;GPV=1;SPV=0.009297;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:182:146,36:100,23:46,13 +chr4 49610504 . A G 0 PASS DP=94;GPV=1;SPV=0.014844;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:17,2:32,6 +chr4 49636085 . A T 0 PASS DP=61;GPV=1;SPV=0.0002515;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:7,9:11,1 +chr4 49647349 . G A 0 PASS DP=169;GPV=1;SPV=0.044924;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:77,9:48,8:29,1 +chr4 49788517 . A G 0 PASS DP=32;GPV=1;SPV=0.07699;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,4:7,1 +chr4 49893276 . C A 0 PASS DP=645;GPV=1;SPV=0.011987;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:362:311,51:144,24:167,27 +chr4 50045157 . T G 0 PASS DP=73;GPV=1;SPV=0.022376;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:30,3:4,7 +chr4 50531544 . C A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr4 50752559 . T C 0 PASS DP=131;GPV=1;SPV=0.045908;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:57,3:0,7 +chr4 51099347 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr4 51567766 . C G 0 PASS DP=65;GPV=1;SPV=0.016282;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:22,4:6,2 +chr4 51717602 . G C 0 PASS DP=33;GPV=1;SPV=0.2164;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chr4 52424285 . G GAAA 0 PASS DP=59;GPV=1;SPV=0.036581;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,11:14,9:8,2 +chr4 54622537 . T C 0 PASS DP=76;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,4:10,2:25,2 +chr4 55117039 . C T 0 PASS DP=95;GPV=1;SPV=0.0077737;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:21,3:21,4 +chr4 55344846 . C CA 0 PASS DP=36;GPV=1;SPV=0.067079;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,7:5,6:4,1 +chr4 55542385 . T A 0 PASS DP=56;GPV=1;SPV=0.033333;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,6:0,1:0,5 +chr4 55761622 . G A 0 PASS DP=76;GPV=1;SPV=0.026414;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,6:19,3:16,3 +chr4 56619681 . C T 0 PASS DP=94;GPV=1;SPV=0.01722;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:27,4:23,4 +chr4 56651878 . G GTGTGTT 0 PASS DP=66;GPV=1;SPV=0.17898;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,5:11,3:25,2 +chr4 56901844 . GT G 0 PASS DP=62;GPV=1;SPV=0.0063671;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,12:11,9:7,3 +chr4 57103659 . TC T 0 PASS DP=41;GPV=1;SPV=0.022451;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:9,5:8,1 +chr4 57429325 . T TC 0 PASS DP=26;GPV=1;SPV=0.15415;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:5,3:6,1 +chr4 58216382 . C T 0 PASS DP=89;GPV=1;SPV=0.0057881;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:18,4:25,5 +chr4 58877410 . CTATA C 0 PASS DP=74;GPV=1;SPV=0.05753;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,5:20,4 +chr4 59158894 . A G 0 PASS DP=95;GPV=1;SPV=3.3036e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:22,4:13,10 +chr4 60170060 . CA C 0 PASS DP=35;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:7,8:6,1 +chr4 60338297 . T C 0 PASS DP=19;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:3,1:3,3 +chr4 61930175 . CA C 0 PASS DP=80;GPV=1;SPV=5.5762e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:23,12:8,4 +chr4 62079954 . C CA 0 PASS DP=57;GPV=1;SPV=0.042605;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:17,8:4,1 +chr4 63417628 . T TACAC 0 PASS DP=47;GPV=1;SPV=0.037328;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,7:9,5:5,2 +chr4 63422490 . T C 0 PASS DP=82;GPV=1;SPV=0.00095274;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,4:16,7 +chr4 63509573 . G A 0 PASS DP=100;GPV=1;SPV=8.9306e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:18,7:21,6 +chr4 63535392 . C G 0 PASS DP=52;GPV=1;SPV=0.038888;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,3:12,5 +chr4 63535460 . A C 0 PASS DP=45;GPV=1;SPV=0.037131;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,5:7,2 +chr4 64653798 . A AAAAAAAAAAAAAAGAAAGAAAAGAAAAGAAAAG 0 PASS DP=53;GPV=1;SPV=0.041838;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:11,2:12,3 +chr4 65334585 . C A 0 PASS DP=118;GPV=1;SPV=0.00025319;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:50,12:26,5:24,7 +chr4 66317249 . A G 0 PASS DP=92;GPV=1;SPV=0.00034554;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:18,8:23,6 +chr4 66681806 . G A 0 PASS DP=114;GPV=1;SPV=2.344e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:51,20:21,13:30,7 +chr4 67342257 . C CAAAA 0 PASS DP=40;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,8:5,7:3,1 +chr4 67540341 . C T 0 PASS DP=95;GPV=1;SPV=0.0037102;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:21,6:20,2 +chr4 68714842 . C A 0 PASS DP=72;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,4:10,2:10,2 +chr4 68977991 . G A 0 PASS DP=82;GPV=1;SPV=0.050238;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,3:24,2 +chr4 69335373 . GTA G 0 PASS DP=56;GPV=1;SPV=0.062133;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,3:13,2 +chr4 69472099 . TACAAAA T 0 PASS DP=88;GPV=1;SPV=0.0063865;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:30,17:16,7:14,10 +chr4 73349484 . TA T 0 PASS DP=92;GPV=1;SPV=0.028888;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,4:20,2:14,2 +chr4 74561269 . A AAT 0 PASS DP=27;GPV=1;SPV=0.034045;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,5:4,3 +chr4 75665626 . AAC A 0 PASS DP=66;GPV=1;SPV=0.023939;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:18,3:15,4 +chr4 76167671 . CT C 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr4 76889847 . CA C 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,7:6,1 +chr4 76917675 . G A 0 PASS DP=126;GPV=1;SPV=0.044051;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,9:47,8:10,1 +chr4 76918224 . C T 0 PASS DP=197;GPV=1;SPV=0.0047068;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:81,22:57,14:24,8 +chr4 80750416 . C T 0 PASS DP=84;GPV=1;SPV=0.0017641;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:14,5:18,3 +chr4 82248742 . CGT C 0 PASS DP=53;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,8:7,6:6,2 +chr4 84242410 . G A 0 PASS DP=93;GPV=1;SPV=0.0030266;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:25,5:21,6 +chr4 86799825 . CTTTT C 0 PASS DP=24;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,1:2,3 +chr4 87113590 . T G 0 PASS DP=91;GPV=1;SPV=0.0007893;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:15,5:24,6 +chr4 87746818 . G C 0 PASS DP=64;GPV=1;SPV=0.034759;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:12,4:14,6 +chr4 88098645 . G GAGATAGAT 0 PASS DP=70;GPV=1;SPV=0.018938;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,11:13,6:9,5 +chr4 88887530 . C CT 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,4:3,2 +chr4 90865779 . C A 0 PASS DP=96;GPV=1;SPV=0.0019678;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:38,8:21,5:17,3 +chr4 92149762 . G A 0 PASS DP=75;GPV=1;SPV=0.0001398;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,6:12,8 +chr4 93244513 . C CTATTATA 0 PASS DP=43;GPV=1;SPV=0.020413;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:10,4:9,3 +chr4 93612825 . G A 0 PASS DP=56;GPV=1;SPV=0.037023;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,7:8,1 +chr4 96513383 . G A 0 PASS DP=115;GPV=1;SPV=1.6916e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:45,21:32,9:13,12 +chr4 100104827 . A ATATGTATATATG 0 PASS DP=82;GPV=1;SPV=0.094058;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,4:18,2:18,2 +chr4 100226787 . GTT G 0 PASS DP=37;GPV=1;SPV=0.027005;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,10:8,9:5,1 +chr4 101470541 . CAT C 0 PASS DP=79;GPV=1;SPV=0.041296;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,4:18,3:14,1 +chr4 101470555 . T C 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,3:15,1 +chr4 102798279 . A AATATATATATATAT 0 PASS DP=61;GPV=1;SPV=0.017962;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,11:12,8:10,3 +chr4 102926038 . A C 0 PASS DP=117;GPV=1;SPV=0.042888;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:56,10:38,5:18,5 +chr4 103732723 . C CCGTATATATGCA 0 PASS DP=78;GPV=1;SPV=0.0072137;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,13:19,7:6,6 +chr4 104220900 . A C 0 PASS DP=65;GPV=1;SPV=0.12418;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,4:6,3:12,1 +chr4 105284064 . ACGTG A 0 PASS DP=39;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:9,3:11,2 +chr4 105914373 . C A 0 PASS DP=37;GPV=1;SPV=0.00034907;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:3,6:7,6 +chr4 107719187 . G GTTTTTT 0 PASS DP=73;GPV=1;SPV=0.0024737;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,16:17,13:6,3 +chr4 109753059 . TATA T 0 PASS DP=72;GPV=1;SPV=0.0136;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,6:14,2:16,4 +chr4 109753065 . A T 0 PASS DP=77;GPV=1;SPV=0.036679;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:13,2:17,4 +chr4 113804741 . A T 0 PASS DP=94;GPV=1;SPV=7.1737e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:13,8:22,10 +chr4 115118961 . G A 0 PASS DP=88;GPV=1;SPV=0.016274;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:14,8:23,7 +chr4 117192020 . ATG A 0 PASS DP=42;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,10:9,9:4,1 +chr4 118501329 . CT C 0 PASS DP=40;GPV=1;SPV=0.017739;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:9,8:5,1 +chr4 118810137 . T G 0 PASS DP=58;GPV=1;SPV=0.016929;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,9:4,2:9,7 +chr4 118876667 . CTCTTTCTTTCTTTCTTTCTTTCTT C 0 PASS DP=51;GPV=1;SPV=0.012898;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,11:0,2:14,9 +chr4 119418794 . G T 0 PASS DP=26;GPV=1;SPV=0.014047;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr4 119479109 . T TGATTACCTCTGTAAAATCA 0 PASS DP=81;GPV=1;SPV=0.023273;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,10:6,5:22,5 +chr4 119531060 . C A 0 PASS DP=88;GPV=1;SPV=0.00432;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:26,4:17,6 +chr4 119576953 . A T 0 PASS DP=87;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:26,4:13,1:13,3 +chr4 119734507 . C T 0 PASS DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:27,6:12,5 +chr4 121405687 . A ATAT 0 PASS DP=34;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr4 124026110 . C T 0 PASS DP=68;GPV=1;SPV=0.019772;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,6:10,3 +chr4 125814698 . G GGA 0 PASS DP=59;GPV=1;SPV=0.0095885;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,16:11,12:12,4 +chr4 128662542 . C CT 0 PASS DP=62;GPV=1;SPV=0.047358;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:16,5:8,4 +chr4 128807055 . C G 0 PASS DP=95;GPV=1;SPV=5.3794e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:42,20:21,7:21,13 +chr4 129956700 . G A 0 PASS DP=103;GPV=1;SPV=0.00010382;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:21,6:18,6 +chr4 130350139 . C T 0 PASS DP=51;GPV=1;SPV=0.095042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:0,0:25,4 +chr4 131278724 . C CT 0 PASS DP=101;GPV=1;SPV=0.024074;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:22,1:22,4 +chr4 132783622 . C T 0 PASS DP=97;GPV=1;SPV=0.00029292;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:22,7:16,4 +chr4 132999967 . G A 0 PASS DP=85;GPV=1;SPV=0.0042441;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:17,7:27,5 +chr4 133456730 . C T 0 PASS DP=74;GPV=1;SPV=0.0031698;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:9,3:23,6 +chr4 135272246 . GT G 0 PASS DP=50;GPV=1;SPV=0.0012088;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,16:5,13:8,3 +chr4 136925000 . G T 0 PASS DP=108;GPV=1;SPV=0.00040855;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:22,5:20,5 +chr4 139092416 . C A 0 PASS DP=81;GPV=1;SPV=0.036354;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:23,4:14,4 +chr4 139092417 . A C 0 PASS DP=71;GPV=1;SPV=0.026881;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:24,4:12,3 +chr4 139092418 . T A 0 PASS DP=76;GPV=1;SPV=0.006996;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:21,4:13,4 +chr4 139989902 . A G 0 PASS DP=65;GPV=1;SPV=0.060769;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:11,3:22,2 +chr4 140800462 . A ATATT 0 PASS DP=45;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,4:17,2:5,2 +chr4 141580080 . TTC T 0 PASS DP=78;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,4:9,3:15,1 +chr4 143948795 . C T 0 PASS DP=127;GPV=1;SPV=0.00029442;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:60,14:27,8:33,6 +chr4 144292744 . C A 0 PASS DP=117;GPV=1;SPV=0.024171;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:63,7:30,5:33,2 +chr4 144562388 . G A 0 PASS DP=109;GPV=1;SPV=9.7059e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:41,16:16,6:25,10 +chr4 146542376 . CT C 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr4 148324367 . T G 0 PASS DP=87;GPV=1;SPV=0.052629;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:22,5:14,3:8,2 +chr4 148492842 . AGTATCCTCTATACATAGTATTTTATATATATC A 0 PASS DP=22;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:1,2:1,2:0,0 +chr4 149102144 . CTT C 0 PASS DP=33;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:11,3:6,2 +chr4 150380982 . CAA C 0 PASS DP=35;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,7:2,1 +chr4 150647352 . CT C 0 PASS DP=20;GPV=1;SPV=0.031857;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:1,3:0,1 +chr4 150780633 . A ATATATATACGTGTATATATATACATATATATACACG 0 PASS DP=68;GPV=1;SPV=0.055746;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,4:8,3:16,1 +chr4 150970557 . A G 0 PASS DP=50;GPV=1;SPV=0.065277;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,6:8,3:6,3 +chr4 151008397 . T C 0 PASS DP=82;GPV=1;SPV=0.0015215;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:14,4:19,5 +chr4 151222669 . T C 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,2:10,3 +chr4 152701645 . A G 0 PASS DP=91;GPV=1;SPV=0.00040756;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:23,7:18,7 +chr4 153399890 . ATT A 0 PASS DP=29;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:10,3:4,2 +chr4 153566329 . G T 0 PASS DP=99;GPV=1;SPV=1.6594e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:13,8:18,4 +chr4 154176775 . C CT 0 PASS DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:11,3:13,2 +chr4 154385557 . G A 0 PASS DP=91;GPV=1;SPV=3.8419e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:7,12:21,7 +chr4 154433395 . C CCTTTTTT 0 PASS DP=20;GPV=1;SPV=0.12587;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:0,0:5,4 +chr4 154751761 . A AAG 0 PASS DP=27;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,4:3,2:3,2 +chr4 157599693 . C G 0 PASS DP=97;GPV=1;SPV=0.0021288;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:23,4:19,5 +chr4 158255594 . G A 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:18,3:15,3 +chr4 158492068 . T TTTTC 0 PASS DP=67;GPV=1;SPV=0.0066451;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,14:10,6:9,8 +chr4 160555509 . T C 0 PASS DP=96;GPV=1;SPV=0.00024258;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:25,8:17,6 +chr4 161887403 . CT C 0 PASS DP=76;GPV=1;SPV=0.067189;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,6:15,4:15,2 +chr4 162657480 . ATATAGTATAGAC A 0 PASS DP=65;GPV=1;SPV=0.0077271;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,6:7,5:16,1 +chr4 164864400 . A AGAG 0 PASS DP=33;GPV=1;SPV=0.037533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:7,6:4,1 +chr4 164892111 . G A 0 PASS DP=94;GPV=1;SPV=0.00013794;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:13,9:26,5 +chr4 165235571 . A G 0 PASS DP=105;GPV=1;SPV=0.016048;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:23,3:25,3 +chr4 166473672 . A C 0 PASS DP=95;GPV=1;SPV=0.00048809;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:17,6:24,6 +chr4 167327273 . C CAA 0 PASS DP=45;GPV=1;SPV=0.0074763;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,8:8,7:2,1 +chr4 169103086 . ATT A 0 PASS DP=51;GPV=1;SPV=0.040008;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,9:8,7:8,2 +chr4 172552837 . T TAAAAAAAA 0 PASS DP=22;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:1,3:2,1 +chr4 176418256 . C CT 0 PASS DP=68;GPV=1;SPV=0.001413;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,23:10,10:14,13 +chr4 176809676 . G A 0 PASS DP=80;GPV=1;SPV=0.0012733;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:20,5:15,6 +chr4 177205827 . CA C 0 PASS DP=66;GPV=1;SPV=0.016636;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:10,3:23,5 +chr4 177511398 . AT A 0 PASS DP=101;GPV=1;SPV=0.0010149;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:23,7:20,3 +chr4 177919881 . A AT 0 PASS DP=55;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:13,6:7,4 +chr4 178098024 . G A 0 PASS DP=104;GPV=1;SPV=0.043916;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:30,2:19,8 +chr4 180436765 . C CAA 0 PASS DP=60;GPV=1;SPV=0.036153;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:14,9:13,2 +chr4 181411099 . A AG 0 PASS DP=59;GPV=1;SPV=0.0062613;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3 +chr4 181825425 . A C 0 PASS DP=41;GPV=1;SPV=0.04735;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,7:4,3:6,4 +chr4 181844536 . C T 0 PASS DP=100;GPV=1;SPV=0.00013137;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:42,14:20,6:22,8 +chr4 182049097 . G A 0 PASS DP=85;GPV=1;SPV=0.02185;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:48,9:23,3:25,6 +chr4 184308769 . C CAAAAAAA 0 PASS DP=42;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:5,5:3,2 +chr4 184607094 . C T 0 PASS DP=93;GPV=1;SPV=0.00075514;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:16,2:16,6 +chr4 184928147 . CAAAAAAAA C 0 PASS DP=51;GPV=1;SPV=0.034441;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,8:6,6:8,2 +chr4 185443342 . A ATATATATTTTTT 0 PASS DP=24;GPV=1;SPV=0.27198;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:7,1:1,3 +chr4 186478194 . T G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr4 186970880 . T C 0 PASS DP=28;GPV=1;SPV=0.024318;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,4:5,5 +chr4 186981764 . G A 0 PASS DP=54;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:12,2:16,2 +chr4 187078357 . T TTGTGTGTGTGTGTGTGTGTGTG 0 PASS DP=60;GPV=1;SPV=0.047407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,9:15,1 +chr4 187298453 . G A 0 PASS DP=79;GPV=1;SPV=0.0011232;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:15,3:19,8 +chr4 187639769 . CT C 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,3:3,2 +chr4 187943519 . C T 0 PASS DP=86;GPV=1;SPV=0.0066158;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:17,4:25,5 +chr4 188443382 . C T 0 PASS DP=38;GPV=1;SPV=0.084679;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,4:10,1 +chr4 188698800 . G A 0 PASS DP=107;GPV=1;SPV=1.959e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:20,6:17,7 +chr4 188974431 . G A 0 PASS DP=20;GPV=1;SPV=0.14474;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:8,3:2,2:6,1 +chr4 189205947 . T A 0 PASS DP=71;GPV=1;SPV=0.057396;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,5:11,2:12,3 +chr4 189447454 . A C 0 PASS DP=85;GPV=1;SPV=0.0086439;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,6:18,4:15,2 +chr4 189447455 . C T 0 PASS DP=95;GPV=1;SPV=0.032947;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,5:18,3:25,2 +chr4 189685393 . A C 0 PASS DP=59;GPV=1;SPV=0.019428;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,11:13,9:6,2 +chr4 189757141 . G GT 0 PASS DP=64;GPV=1;SPV=0.015407;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,13:10,3:15,10 +chr4 190050837 . C T 0 PASS DP=293;GPV=1;SPV=0.049845;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:138,21:65,14:73,7 +chr4 190116123 . T C 0 PASS DP=303;GPV=1;SPV=0.029934;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:159:117,18:58,9:59,9 +chr5 100875 . T C 0 PASS DP=47;GPV=1;SPV=0.16035;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:23,3:13,2:10,1 +chr5 502907 . C T 0 PASS DP=151;GPV=1;SPV=0.025674;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:79,13:35,11:44,2 +chr5 649065 . TG T 0 PASS DP=56;GPV=1;SPV=0.062133;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:18,3:10,2 +chr5 649720 . CCG C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,2:2,2 +chr5 682627 . C G 0 PASS DP=113;GPV=1;SPV=0.020165;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:32,2:27,5 +chr5 700911 . G A 0 PASS DP=53;GPV=1;SPV=0.027715;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:15,3:11,4 +chr5 700916 . G A 0 PASS DP=53;GPV=1;SPV=0.048244;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:16,3:11,3 +chr5 714493 . AT A 0 PASS DP=93;GPV=1;SPV=0.031765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:6,3:30,7 +chr5 847849 . T G 0 PASS DP=124;GPV=1;SPV=0.041895;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:23,2:35,5 +chr5 1238415 . G GA 0 PASS DP=90;GPV=1;SPV=0.035178;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,5:18,1:21,4 +chr5 2580850 . CCTTCCTTTCTTT C 0 PASS DP=55;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,5:2,1:6,4 +chr5 2594305 . TGCACAGAGATACACACAGACACACAGAGATACACAGGCACAGACAGAC T 0 PASS DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,3:13,1 +chr5 4040418 . C T 0 PASS DP=41;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,5:8,1:9,4 +chr5 4506713 . G A 0 PASS DP=96;GPV=1;SPV=0.014858;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:20,2:27,5 +chr5 4559105 . A G 0 PASS DP=94;GPV=1;SPV=0.01722;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:25,5:25,3 +chr5 5816146 . GAT G 0 PASS DP=39;GPV=1;SPV=0.10008;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:2,1:16,5 +chr5 6260056 . A T 0 PASS DP=94;GPV=1;SPV=0.00057272;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:17,5:20,5 +chr5 6313801 . C CT 0 PASS DP=52;GPV=1;SPV=0.011847;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,6:7,4 +chr5 6995984 . C T 0 PASS DP=97;GPV=1;SPV=1.2479e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:37,17:15,10:22,7 +chr5 7288807 . TTCTTCTTC T 0 PASS DP=63;GPV=1;SPV=0.016301;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,3:15,3 +chr5 7776193 . T TA 0 PASS DP=68;GPV=1;SPV=0.0051328;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:16,16:7,14:9,2 +chr5 8454942 . T C 0 PASS DP=78;GPV=1;SPV=0.03854;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,2:16,8 +chr5 9021991 . C T 0 PASS DP=100;GPV=1;SPV=4.3022e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:41,16:16,7:25,9 +chr5 9674709 . C T 0 PASS DP=90;GPV=1;SPV=0.00043374;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:22,7:12,3 +chr5 9766290 . T C 0 PASS DP=105;GPV=1;SPV=1.3389e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:21,6:14,11 +chr5 9954291 . G A 0 PASS DP=89;GPV=1;SPV=0.0032629;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:22,5:12,2 +chr5 10285688 . C CTCTCTCTT 0 PASS DP=73;GPV=1;SPV=0.03878;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,11:14,6:13,5 +chr5 10352719 . T G 0 PASS DP=107;GPV=1;SPV=0.00039347;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:50,14:20,8:30,6 +chr5 10864421 . AT A 0 PASS DP=41;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:5,3:9,5 +chr5 11228353 . C CA 0 PASS DP=37;GPV=1;SPV=0.036457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,7:10,5:6,2 +chr5 12099554 . A T 0 PASS DP=86;GPV=1;SPV=0.0059953;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,8:16,3:12,5 +chr5 13029343 . A AGGG 0 PASS DP=23;GPV=1;SPV=0.083916;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:5,3:0,2 +chr5 13149494 . CAGATAGAT C 0 PASS DP=73;GPV=1;SPV=0.011623;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:18,8:17,9 +chr5 15033020 . CT C 0 PASS DP=42;GPV=1;SPV=0.083787;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:16,5:6,1 +chr5 15265506 . C T 0 PASS DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:20,1:22,4 +chr5 15379417 . G A 0 PASS DP=75;GPV=1;SPV=0.00076695;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:13,5:16,5 +chr5 16142884 . CTT C 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,5:1,1 +chr5 16232857 . A T 0 PASS DP=83;GPV=1;SPV=0.0021309;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:26,7:14,5 +chr5 17217075 . A T 0 PASS DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:8,1:23,3 +chr5 17343355 . A AAATAATAAT 0 PASS DP=70;GPV=1;SPV=0.0042467;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:16,13:8,8:8,5 +chr5 17595177 . G A 0 PASS DP=156;GPV=1;SPV=0.040357;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:65,11:65,7:0,4 +chr5 18369049 . A ATGG 0 PASS DP=80;GPV=1;SPV=0.024981;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,4:13,1:5,3 +chr5 18780674 . AT A 0 PASS DP=25;GPV=1;SPV=0.024499;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,8:1,4:5,4 +chr5 19382635 . T TTGTGTGTG 0 PASS DP=56;GPV=1;SPV=0.020403;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,10:13,4:8,6 +chr5 20095323 . G A 0 PASS DP=37;GPV=1;SPV=0.175;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,2:4,1:1,1 +chr5 21970839 . CAAAA C 0 PASS DP=18;GPV=1;SPV=0.0082418;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:2,4:0,0 +chr5 22466525 . G A 0 PASS DP=77;GPV=1;SPV=0.022062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,3:17,2 +chr5 25382046 . T C 0 PASS DP=86;GPV=1;SPV=0.011784;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:13,7:17,4 +chr5 26121258 . A G 0 PASS DP=98;GPV=1;SPV=0.0016467;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:24,3:22,8 +chr5 26803072 . A G 0 PASS DP=114;GPV=1;SPV=0.00058548;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:30,8:24,5 +chr5 27949409 . CTT C 0 PASS DP=25;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:3,3:5,1 +chr5 29877631 . G T 0 PASS DP=47;GPV=1;SPV=0.06407;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:12,4:11,1 +chr5 29947445 . G A 0 PASS DP=87;GPV=1;SPV=0.000239;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:18,7:19,7 +chr5 30771958 . G A 0 PASS DP=109;GPV=1;SPV=5.3599e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:43,19:29,12:14,7 +chr5 33178032 . CCA C 0 PASS DP=69;GPV=1;SPV=0.00021757;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:8,3:10,16 +chr5 33881564 . C CT 0 PASS DP=74;GPV=1;SPV=0.023403;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:21,2:10,3 +chr5 33911832 . T C 0 PASS DP=93;GPV=1;SPV=0.00064041;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:18,8:23,4 +chr5 34665043 . G A 0 PASS DP=41;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr5 35880888 . A G 0 PASS DP=112;GPV=1;SPV=0.00011099;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:52,17:34,9:18,8 +chr5 39028201 . G T 0 PASS DP=54;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:7,3:20,1 +chr5 39371299 . G A 0 PASS DP=121;GPV=1;SPV=1.7232e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:47,15:29,7:18,8 +chr5 40294210 . C A 0 PASS DP=99;GPV=1;SPV=2.9026e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:38,15:21,9:17,6 +chr5 40546086 . G T 0 PASS DP=64;GPV=1;SPV=0.0065197;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:11,2:16,11 +chr5 41426844 . A AT 0 PASS DP=109;GPV=1;SPV=1.7371e-06;SS=2;SSC=57;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:36,16:19,10:17,6 +chr5 42917957 . C T 0 PASS DP=103;GPV=1;SPV=0.00047993;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:20,4:23,7 +chr5 43645657 . C A 0 PASS DP=32;GPV=1;SPV=0.034106;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,1:6,8 +chr5 44748860 . G T 0 PASS DP=66;GPV=1;SPV=0.035343;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,5:6,1:10,4 +chr5 45807187 . ATGTG A 0 PASS DP=39;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,5:11,3:2,2 +chr5 46663683 . A C 0 PASS DP=44;GPV=1;SPV=0.017166;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:7,2:12,5 +chr5 46665462 . C A 0 PASS DP=82;GPV=1;SPV=0.035088;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:1,1:34,12 +chr5 46665464 . A G 0 PASS DP=77;GPV=1;SPV=0.0093922;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:1,1:31,13 +chr5 46756249 . G C 0 PASS DP=30;GPV=1;SPV=0.013393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:6,4:2,4 +chr5 46783409 . A G 0 PASS DP=95;GPV=1;SPV=0.011463;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,11:16,2:38,9 +chr5 47112438 . C G 0 PASS DP=54;GPV=1;SPV=0.062847;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:7,3:22,3 +chr5 47112440 . A G 0 PASS DP=56;GPV=1;SPV=0.071601;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:8,3:23,3 +chr5 47116274 . C A 0 PASS DP=50;GPV=1;SPV=0.28678;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:4,2:29,2 +chr5 47116995 . G A 0 PASS DP=60;GPV=1;SPV=0.10478;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:29,4:7,2 +chr5 47297581 . G A 0 PASS DP=260;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:127,20:78,9:49,11 +chr5 50141951 . C A 0 PASS DP=190;GPV=1;SPV=0.025998;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:21,8:66,8 +chr5 50145036 . T G 0 PASS DP=460;GPV=1;SPV=0.020017;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:248:221,27:69,8:152,19 +chr5 50628618 . T A 0 PASS DP=98;GPV=1;SPV=0.0033793;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:31,5:14,4 +chr5 50655431 . C CTT 0 PASS DP=58;GPV=1;SPV=0.021615;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,7:3,1:11,6 +chr5 51500712 . C CCTCT 0 PASS DP=32;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,5:6,4:4,1 +chr5 51567438 . G GTA 0 PASS DP=45;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,8:11,4:7,4 +chr5 51609127 . C CAA 0 PASS DP=41;GPV=1;SPV=0.020314;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:12,7:6,1 +chr5 51879386 . CAA C 0 PASS DP=35;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,4:11,3:7,1 +chr5 52103502 . G GATTTT 0 PASS DP=89;GPV=1;SPV=0.00077065;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:12,8:16,11 +chr5 54798863 . A AAGAC 0 PASS DP=37;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,5:2,3:4,2 +chr5 58817454 . C T 0 PASS DP=83;GPV=1;SPV=0.0095669;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:19,5:21,3 +chr5 60668159 . T TTTTA 0 PASS DP=47;GPV=1;SPV=0.0098611;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,10:5,5:7,5 +chr5 60874986 . G T 0 PASS DP=108;GPV=1;SPV=1.3278e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:44,18:28,10:16,8 +chr5 61638540 . T C 0 PASS DP=95;GPV=1;SPV=1.2598e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:36,17:15,10:21,7 +chr5 62238968 . A AT 0 PASS DP=94;GPV=1;SPV=0.028602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:24,7:19,1 +chr5 62238999 . T TG 0 PASS DP=99;GPV=1;SPV=0.039663;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:28,7:20,1 +chr5 64463583 . G T 0 PASS DP=95;GPV=1;SPV=0.019795;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:20,5:23,7 +chr5 65007626 . CTTT C 0 PASS DP=47;GPV=1;SPV=0.0045748;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:8,12:6,7:2,5 +chr5 66389037 . G A 0 PASS DP=87;GPV=1;SPV=0.0040054;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,9:20,4:20,5 +chr5 66522574 . T A 0 PASS DP=102;GPV=1;SPV=0.0047446;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:15,6:31,2 +chr5 67398893 . A ATTATTTATTTATTTATTTAT 0 PASS DP=79;GPV=1;SPV=0.031786;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,8:8,4:20,4 +chr5 67508890 . G GTATATA 0 PASS DP=34;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,3:5,1 +chr5 68217627 . G GGTGTGTGT 0 PASS DP=72;GPV=1;SPV=0.028582;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:20,14:13,3 +chr5 73682418 . C CT 0 PASS DP=78;GPV=1;SPV=0.011394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:20,13:15,5 +chr5 76829263 . CTT C 0 PASS DP=80;GPV=1;SPV=0.20253;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:22,4:14,2:8,2 +chr5 77443876 . CT C 0 PASS DP=37;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,4:4,3 +chr5 79567406 . C CT 0 PASS DP=42;GPV=1;SPV=0.062905;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:12,9:11,1 +chr5 80066094 . CA C 0 PASS DP=54;GPV=1;SPV=0.048297;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2 +chr5 80338707 . T G 0 PASS DP=98;GPV=1;SPV=0.0090267;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:18,7:30,1 +chr5 80600615 . T C 0 PASS DP=52;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:8,2:9,3 +chr5 80612791 . T C 0 PASS DP=34;GPV=1;SPV=0.097916;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,5:11,4:3,1 +chr5 80617029 . CTATATATATA C 0 PASS DP=47;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:17,2:5,2 +chr5 80762778 . T TTTTTA 0 PASS DP=95;GPV=1;SPV=0.029694;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,11:16,7:21,4 +chr5 82050839 . CA C 0 PASS DP=39;GPV=1;SPV=0.038556;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr5 82472884 . ATATAT A 0 PASS DP=88;GPV=1;SPV=0.042665;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:37,9:3,1 +chr5 82505422 . C A 0 PASS DP=107;GPV=1;SPV=0.027702;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:54,6:26,2:28,4 +chr5 84238665 . G GTTTTTT 0 PASS DP=28;GPV=1;SPV=0.0074891;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:1,4:4,1 +chr5 84359577 . C T 0 PASS DP=109;GPV=1;SPV=8.5136e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:23,7:18,5 +chr5 85392531 . C T 0 PASS DP=84;GPV=1;SPV=0.010345;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:25,4:16,4 +chr5 85392541 . C T 0 PASS DP=88;GPV=1;SPV=0.015734;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:24,3:19,4 +chr5 85392546 . CA C 0 PASS DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:25,3:20,2 +chr5 85420733 . A C 0 PASS DP=73;GPV=1;SPV=0.031527;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:40,8:17,4:23,4 +chr5 85420734 . TTA T 0 PASS DP=78;GPV=1;SPV=0.022898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:17,4:25,4 +chr5 86218528 . A T 0 PASS DP=98;GPV=1;SPV=3.9621e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:20,11:17,3 +chr5 89121849 . C CT 0 PASS DP=54;GPV=1;SPV=0.031077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:13,3:10,2 +chr5 89480700 . T A 0 PASS DP=74;GPV=1;SPV=5.7039e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:13,8:11,4 +chr5 91035846 . A G 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2 +chr5 91150009 . CTTT C 0 PASS DP=48;GPV=1;SPV=0.015726;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr5 93142335 . A T 0 PASS DP=89;GPV=1;SPV=3.7484e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:37,19:22,10:15,9 +chr5 93341444 . C CTTT 0 PASS DP=40;GPV=1;SPV=0.0092864;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,7:8,6:5,1 +chr5 93351645 . G A 0 PASS DP=104;GPV=1;SPV=0.00053646;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:25,8:19,3 +chr5 96680383 . G A 0 PASS DP=40;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,2:1,1:6,1 +chr5 97634997 . G GT 0 PASS DP=66;GPV=1;SPV=0.015665;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,8:15,7:10,1 +chr5 98071411 . A AAGAGAGAGAGAGAGAGAGAGAGAG 0 PASS DP=25;GPV=1;SPV=0.15021;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:6,3:2,2 +chr5 98851539 . CTTTTTTTT C 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0 +chr5 99954797 . C CA 0 PASS DP=88;GPV=1;SPV=0.00080682;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,11:14,6:23,5 +chr5 101381937 . G A 0 PASS DP=66;GPV=1;SPV=0.11371;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,4:13,3:15,1 +chr5 102050841 . T C 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,1:5,5 +chr5 102414907 . GTAAA G 0 PASS DP=80;GPV=1;SPV=0.029668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:14,9:20,5 +chr5 107827145 . GA G 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:14,3:3,1 +chr5 108558362 . A G 0 PASS DP=62;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:6,2:2,1:4,1 +chr5 109780510 . CTG C 0 PASS DP=83;GPV=1;SPV=0.0024346;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:31,20:18,14:13,6 +chr5 109932957 . T TTG 0 PASS DP=71;GPV=1;SPV=0.049775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,11:14,6:14,5 +chr5 111098300 . C G 0 PASS DP=101;GPV=1;SPV=0.00075282;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:18,9:26,2 +chr5 111964873 . A T 0 PASS DP=40;GPV=1;SPV=0.026042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,1:5,3 +chr5 112035948 . ATGTTTAGTTCTCACTTATAAGTGAGAGCATACAGTATTTGGTTTTC A 0 PASS DP=55;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:12,9:9,4 +chr5 112377215 . G GA 0 PASS DP=52;GPV=1;SPV=0.0082887;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:15,9:9,1 +chr5 113418689 . T C 0 PASS DP=92;GPV=1;SPV=0.024912;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:18,4:16,2 +chr5 113424132 . T TACACACACACAC 0 PASS DP=43;GPV=1;SPV=0.0037215;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:7,2:2,4 +chr5 113942875 . CTT C 0 PASS DP=29;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:4,4:4,1 +chr5 114385521 . A G 0 PASS DP=71;GPV=1;SPV=0.065336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:16,4:21,1 +chr5 115547937 . G GTGTGTGTGTGTGTATA 0 PASS DP=27;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,2:4,2 +chr5 118300419 . G A 0 PASS DP=107;GPV=1;SPV=0.00035702;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:54,18:31,9:23,9 +chr5 119089293 . T TA 0 PASS DP=28;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,1:2,4 +chr5 119259999 . TAAAAAAAAAAA T 0 PASS DP=43;GPV=1;SPV=0.025988;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:6,4:7,3 +chr5 119503076 . T TTG 0 PASS DP=72;GPV=1;SPV=0.030283;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:21,4:6,8 +chr5 120048971 . T G 0 PASS DP=47;GPV=1;SPV=0.027654;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:6,5:11,2 +chr5 121758050 . G A 0 PASS DP=92;GPV=1;SPV=0.00033668;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:42,15:21,7:21,8 +chr5 121946774 . A T 0 PASS DP=81;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:52:1,3:1,2:0,1 +chr5 122768581 . GAAGAAGAAGAAA G 0 PASS DP=67;GPV=1;SPV=0.040341;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:20,4:6,2 +chr5 125385480 . A ATTTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.0046299;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,11:3,4:4,7 +chr5 126209194 . C CGACACTTATGACCTCACTTAATCTTAACTACT 0 PASS DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:10,4:22,2 +chr5 126301689 . C CT 0 PASS DP=40;GPV=1;SPV=0.020196;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,5:10,3:4,2 +chr5 127674413 . T TC 0 PASS DP=57;GPV=1;SPV=0.0023514;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,10:12,5:8,5 +chr5 128479998 . A C 0 PASS DP=22;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,3:5,1:2,2 +chr5 128818607 . G A 0 PASS DP=35;GPV=1;SPV=0.02607;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:9,2:2,2 +chr5 128818611 . A G 0 PASS DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,2:3,3 +chr5 128862735 . C T 0 PASS DP=86;GPV=1;SPV=0.00054719;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:38,13:19,7:19,6 +chr5 133040733 . T TTGTGTG 0 PASS DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:17,4:3,6 +chr5 133132133 . A AT 0 PASS DP=92;GPV=1;SPV=0.038534;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:16,2:21,6 +chr5 133132135 . A T 0 PASS DP=81;GPV=1;SPV=0.04432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,1:15,6 +chr5 133625816 . TC T 0 PASS DP=47;GPV=1;SPV=0.11664;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,3:11,2 +chr5 133625871 . CCATAT C 0 PASS DP=41;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:14,2:4,2 +chr5 133625903 . CCAT C 0 PASS DP=39;GPV=1;SPV=0.037203;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr5 134581621 . C A 0 PASS DP=91;GPV=1;SPV=0.012341;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:14,4:29,3 +chr5 135465724 . C CA 0 PASS DP=115;GPV=1;SPV=2.2194e-05;SS=2;SSC=46;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:22,6:23,9 +chr5 135886603 . AT A 0 PASS DP=27;GPV=1;SPV=0.048951;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,4:3,1:0,3 +chr5 135886606 . T A 0 PASS DP=20;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:1,1:0,1 +chr5 137160497 . C CTA 0 PASS DP=22;GPV=1;SPV=0.020124;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:0,2:7,5 +chr5 137916478 . T C 0 PASS DP=70;GPV=1;SPV=0.043214;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:20,5:14,4 +chr5 138719109 . C CA 0 PASS DP=57;GPV=1;SPV=0.0072028;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:17,10:1,1 +chr5 138947465 . G A 0 PASS DP=104;GPV=1;SPV=0.0001115;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:21,9:24,6 +chr5 139003676 . G A 0 PASS DP=85;GPV=1;SPV=8.4049e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:12,7:18,5 +chr5 140286600 . G A 0 PASS DP=18;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:1,2:0,1 +chr5 140467115 . TTG T 0 PASS DP=102;GPV=1;SPV=0.018474;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:27,4:25,3 +chr5 142188590 . A G 0 PASS DP=84;GPV=1;SPV=0.024367;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:23,5:11,2 +chr5 142683857 . AATCCTTT A 0 PASS DP=38;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:11,4:3,4 +chr5 144465779 . C CTT 0 PASS DP=44;GPV=1;SPV=0.028042;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2 +chr5 145502843 . G GT 0 PASS DP=77;GPV=1;SPV=0.0034956;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:12,5:22,4 +chr5 147260167 . C CTG 0 PASS DP=24;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:2,1:3,1 +chr5 147651165 . T TTTATCATTACTATAAGAAAA 0 PASS DP=72;GPV=1;SPV=0.014541;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:14,7:11,5 +chr5 148212537 . T TATATA 0 PASS DP=34;GPV=1;SPV=0.041789;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,2:8,3 +chr5 151474176 . A G 0 PASS DP=43;GPV=1;SPV=0.071753;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,2:10,2 +chr5 151474178 . A G 0 PASS DP=46;GPV=1;SPV=0.024248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:9,2:8,3 +chr5 152278458 . G GTTTT 0 PASS DP=24;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,4:3,2:4,2 +chr5 153189298 . A G 0 PASS DP=95;GPV=1;SPV=0.00097618;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:27,8:15,3 +chr5 153217085 . G A 0 PASS DP=35;GPV=1;SPV=0.0032114;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4 +chr5 153428652 . AG A 0 PASS DP=66;GPV=1;SPV=0.046412;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:21,8:12,2 +chr5 154464170 . C T 0 PASS DP=106;GPV=1;SPV=0.0014109;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:56,15:21,4:35,11 +chr5 155032165 . A G 0 PASS DP=56;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:13,2:14,2 +chr5 155033235 . TA T 0 PASS DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:23,3:5,1 +chr5 156660289 . C T 0 PASS DP=136;GPV=1;SPV=0.010351;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:31,10:20,7 +chr5 157890366 . AT A 0 PASS DP=95;GPV=1;SPV=0.028779;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:35,6:17,2:18,4 +chr5 158567730 . C CTTTCTTT 0 PASS DP=47;GPV=1;SPV=0.097821;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,7:6,4:13,3 +chr5 160354597 . AG A 0 PASS DP=51;GPV=1;SPV=0.042236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:9,10:4,2:5,8 +chr5 161809637 . TTTTCTTTCTTTCTTTCTTTC T 0 PASS DP=61;GPV=1;SPV=0.020223;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,11:3,2:13,9 +chr5 162681843 . A T 0 PASS DP=82;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:5,3:3,2:2,1 +chr5 162685313 . C CTT 0 PASS DP=46;GPV=1;SPV=0.00035338;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,13:0,9:1,4 +chr5 162688688 . G T 0 PASS DP=98;GPV=1;SPV=0.0040464;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:22,4:21,4 +chr5 162688689 . C T 0 PASS DP=102;GPV=1;SPV=0.0040417;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:23,4:22,4 +chr5 163626366 . ACT A 0 PASS DP=48;GPV=1;SPV=0.0072753;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:8,7:7,6 +chr5 165884152 . C T 0 PASS DP=86;GPV=1;SPV=0.0071318;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:22,3:15,4 +chr5 167181504 . A G 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,3:17,1 +chr5 168502386 . T A 0 PASS DP=74;GPV=1;SPV=0.052808;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:23,1:14,4 +chr5 168539872 . A ATTTTTTTT 0 PASS DP=61;GPV=1;SPV=0.015377;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,11:14,6:12,5 +chr5 168908214 . C T 0 PASS DP=92;GPV=1;SPV=7.9266e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:19,9:14,3 +chr5 170264978 . CTTTTTT C 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,6:3,3 +chr5 170503711 . G A 0 PASS DP=55;GPV=1;SPV=0.016386;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:16,4:7,2 +chr5 170731693 . C CA 0 PASS DP=43;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:16,3:5,2 +chr5 172052164 . G T 0 PASS DP=99;GPV=1;SPV=0.0030721;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:18,6:27,3 +chr5 172725544 . C T 0 PASS DP=89;GPV=1;SPV=0.0039154;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:16,3:19,4 +chr5 172857589 . C G 0 PASS DP=35;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:0,1:1,1 +chr5 173289783 . CCCTTCCTTCCTTCCTTCCTTCCTT C 0 PASS DP=30;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:0,0:11,4 +chr5 173516978 . T C 0 PASS DP=37;GPV=1;SPV=0.057896;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,4:10,2 +chr5 174061909 . CT C 0 PASS DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:17,7:5,3 +chr5 175918325 . C G 0 PASS DP=50;GPV=1;SPV=0.039973;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:8,5:13,3 +chr5 178018091 . G A 0 PASS DP=101;GPV=1;SPV=0.011798;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:27,2:21,5 +chr5 178027845 . T G 0 PASS DP=89;GPV=1;SPV=0.006972;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:22,8:22,1 +chr5 178027971 . C T 0 PASS DP=102;GPV=1;SPV=0.021516;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:59,9:30,1:29,8 +chr5 179013776 . G A 0 PASS DP=53;GPV=1;SPV=0.051054;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,1:9,3 +chr5 179397489 . GTATATATATATATA G 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr5 179429980 . G A 0 PASS DP=65;GPV=1;SPV=0.027835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,9:12,4 +chr5 179594547 . G A 0 PASS DP=34;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,14:1,2:7,12 +chr5 180300049 . G A 0 PASS DP=173;GPV=1;SPV=0.018747;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:78,10:44,1:34,9 +chr5 180530909 . C G 0 PASS DP=139;GPV=1;SPV=0.032217;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:58,12:24,2:34,10 +chr5 181032233 . AG A 0 PASS DP=53;GPV=1;SPV=0.23077;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:5,2:3,1:2,1 +chr5 181032238 . G A 0 PASS DP=46;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:3,2:1,1:2,1 +chr6 1111770 . C G 0 PASS DP=86;GPV=1;SPV=1.727e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:16,7:13,7 +chr6 1512694 . AAAAG A 0 PASS DP=49;GPV=1;SPV=0.0068176;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,4:8,6 +chr6 2828420 . G GA 0 PASS DP=32;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,6:5,3:1,3 +chr6 2940604 . G A 0 PASS DP=71;GPV=1;SPV=0.02519;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:13,7:19,2 +chr6 4867772 . G GT 0 PASS DP=74;GPV=1;SPV=0.043808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,5:14,4:21,1 +chr6 5292829 . G A 0 PASS DP=99;GPV=1;SPV=0.022916;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:33,5:19,2 +chr6 6332752 . TA T 0 PASS DP=65;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,8:3,4:4,4 +chr6 6817878 . C CTTTT 0 PASS DP=37;GPV=1;SPV=0.15398;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,4:9,3:7,1 +chr6 7117388 . GTTTTTTTTTTTTTTT G 0 PASS DP=36;GPV=1;SPV=0.0097821;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,7:5,5:4,2 +chr6 7449715 . A ATT 0 PASS DP=49;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:13,3:8,3 +chr6 7659339 . CT C 0 PASS DP=34;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,10:5,6:3,4 +chr6 7957018 . A AGTGTGT 0 PASS DP=48;GPV=1;SPV=0.0066622;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,6:11,4:4,2 +chr6 8041312 . C CTTTT 0 PASS DP=48;GPV=1;SPV=0.028628;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,7:11,4 +chr6 8901169 . T TAAAA 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,11:5,8:1,3 +chr6 9204743 . T C 0 PASS DP=108;GPV=1;SPV=0.0014733;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:51,11:23,4:28,7 +chr6 9494455 . C T 0 PASS DP=30;GPV=1;SPV=0.10909;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,2:2,1:0,1 +chr6 12337054 . C A 0 PASS DP=100;GPV=1;SPV=0.00065809;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:33,9:15,5 +chr6 13732406 . C A 0 PASS DP=92;GPV=1;SPV=0.0071789;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:18,5:22,2 +chr6 14448843 . T C 0 PASS DP=82;GPV=1;SPV=0.041422;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,6:11,3:17,3 +chr6 14684389 . A G 0 PASS DP=82;GPV=1;SPV=0.0011599;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:17,7:17,3 +chr6 15277795 . C A 0 PASS DP=67;GPV=1;SPV=0.15091;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:21,5:6,1:15,4 +chr6 16443208 . CA C 0 PASS DP=29;GPV=1;SPV=0.046962;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,4:0,1 +chr6 18570841 . C G 0 PASS DP=79;GPV=1;SPV=0.048187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:17,3:22,2 +chr6 19941221 . G A 0 PASS DP=58;GPV=1;SPV=0.040102;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,2:10,4 +chr6 20021488 . A AAAATAAAT 0 PASS DP=85;GPV=1;SPV=0.02282;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:17,7:19,8 +chr6 20273024 . CTTTTTTTT C 0 PASS DP=38;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:11,5:4,4 +chr6 20371541 . CA C 0 PASS DP=47;GPV=1;SPV=0.017517;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:13,8:6,4 +chr6 21156424 . C CAAA 0 PASS DP=48;GPV=1;SPV=0.0020034;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:8,9:5,3 +chr6 21965351 . C T 0 PASS DP=26;GPV=1;SPV=0.20468;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr6 22162978 . A T 0 PASS DP=54;GPV=1;SPV=0.038803;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:15,3:6,7 +chr6 22162980 . AGT A 0 PASS DP=58;GPV=1;SPV=0.011696;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:16,4:8,7 +chr6 22163000 . ATAGATAGT A 0 PASS DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:13,4:11,6 +chr6 23731309 . ATT A 0 PASS DP=58;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:2,4:1,3:1,1 +chr6 26137737 . CATATATATATATATATATATAT C 0 PASS DP=24;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:7,4:0,3 +chr6 26315902 . C T 0 PASS DP=41;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,4:10,2:6,2 +chr6 26382666 . A G 0 PASS DP=68;GPV=1;SPV=0.011098;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,6:12,4:15,2 +chr6 26522893 . A T 0 PASS DP=111;GPV=1;SPV=0.0027576;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:24,4:23,4 +chr6 26605221 . T C 0 PASS DP=58;GPV=1;SPV=0.0048714;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,2:10,8 +chr6 27100546 . T C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:5,1:11,3 +chr6 27217046 . A AAAAACAAAACAAAAC 0 PASS DP=57;GPV=1;SPV=0.049992;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:14,4:15,2 +chr6 27217081 . A C 0 PASS DP=45;GPV=1;SPV=0.0026559;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,18:10,8:4,10 +chr6 27235620 . T G 0 PASS DP=33;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,4:2,1:5,3 +chr6 27748895 . C T 0 PASS DP=97;GPV=1;SPV=0.00037553;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:21,5:18,6 +chr6 29238947 . TTATA T 0 PASS DP=90;GPV=1;SPV=0.10966;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:26,4:11,3:15,1 +chr6 29932035 . C G 0 PASS DP=45;GPV=1;SPV=0.01269;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:9,3:6,2 +chr6 30467010 . ATTTTTTTTTTTTTT A 0 PASS DP=46;GPV=1;SPV=0.016525;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:6,1:12,5 +chr6 31487417 . CA C 0 PASS DP=121;GPV=1;SPV=0.0038365;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:64,11:41,3:23,8 +chr6 31487481 . G T 0 PASS DP=162;GPV=1;SPV=0.028495;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:69,19:45,6:24,13 +chr6 32979047 . G T 0 PASS DP=42;GPV=1;SPV=0.099099;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:8,2:10,2 +chr6 32993949 . TTTTTTTTTTTTTGG T 0 PASS DP=31;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:6,7:4,1 +chr6 33361461 . G C 0 PASS DP=89;GPV=1;SPV=0.00079781;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:22,6:16,5 +chr6 34212002 . CAAAAAA C 0 PASS DP=37;GPV=1;SPV=0.014832;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,10:3,8:5,2 +chr6 34258748 . A ATATTTTTTTT 0 PASS DP=25;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,5:2,3:5,2 +chr6 35543076 . T A 0 PASS DP=113;GPV=1;SPV=0.00017103;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:31,10:17,3 +chr6 35652253 . A G 0 PASS DP=111;GPV=1;SPV=0.040434;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,7:33,6:18,1 +chr6 35791058 . AG A 0 PASS DP=135;GPV=1;SPV=0.030144;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:62,19:19,9:43,10 +chr6 36153472 . G A 0 PASS DP=98;GPV=1;SPV=0.00026004;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:24,4:14,7 +chr6 37262032 . T C 0 PASS DP=41;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,4:5,2:3,2 +chr6 38228351 . C CCA 0 PASS DP=34;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:5,1:3,3 +chr6 38772971 . CTTTTTTT C 0 PASS DP=37;GPV=1;SPV=0.021064;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:5,9:7,2 +chr6 39058671 . C T 0 PASS DP=110;GPV=1;SPV=0.012167;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:48,15:25,6:23,9 +chr6 41802025 . G GT 0 PASS DP=87;GPV=1;SPV=0.0081641;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,6:19,2:15,4 +chr6 41985304 . CTT C 0 PASS DP=28;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:7,8:1,1 +chr6 42138850 . A AACACACACACACACACAC 0 PASS DP=44;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,9:4,5:6,4 +chr6 42494445 . T TC 0 PASS DP=28;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,6:6,3:4,3 +chr6 43570311 . CAAA C 0 PASS DP=31;GPV=1;SPV=0.040038;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:9,4:0,2 +chr6 44271370 . G T 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,2:11,2 +chr6 45100541 . T TA 0 PASS DP=55;GPV=1;SPV=0.031247;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,7:13,5 +chr6 45399773 . G A 0 PASS DP=40;GPV=1;SPV=0.12269;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,3:9,2 +chr6 45891633 . C CA 0 PASS DP=57;GPV=1;SPV=0.020186;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:11,8:9,2 +chr6 46877227 . C CTTTCTTTCTTTCTTTCT 0 PASS DP=66;GPV=1;SPV=0.033698;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,7:8,2:17,5 +chr6 48304249 . T G 0 PASS DP=91;GPV=1;SPV=0.00047744;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:14,7:23,4 +chr6 53157950 . AAAG A 0 PASS DP=57;GPV=1;SPV=0.034034;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,3:14,2 +chr6 54675034 . A G 0 PASS DP=97;GPV=1;SPV=0.018053;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:28,4:21,3 +chr6 55962557 . T C 0 PASS DP=63;GPV=1;SPV=0.048018;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:12,2:21,4 +chr6 57539658 . A G 0 PASS DP=63;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,4:8,3:15,1 +chr6 57913549 . C T 0 PASS DP=100;GPV=1;SPV=5.9634e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:40,21:21,10:19,11 +chr6 58755015 . A G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr6 59422846 . T G 0 PASS DP=52;GPV=1;SPV=0.031141;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:6,5:10,2 +chr6 63148838 . CA C 0 PASS DP=56;GPV=1;SPV=0.040965;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:19,4:6,1 +chr6 63458066 . TTA T 0 PASS DP=72;GPV=1;SPV=0.079949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,2:18,2 +chr6 67659586 . G T 0 PASS DP=83;GPV=1;SPV=0.024816;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:24,3:16,3 +chr6 68904069 . A G 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,3:0,1 +chr6 69533355 . C T 0 PASS DP=87;GPV=1;SPV=0.027692;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:21,3:22,3 +chr6 69921531 . C CAT 0 PASS DP=101;GPV=1;SPV=0.0048013;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:20,8:18,6 +chr6 72074925 . C T 0 PASS DP=87;GPV=1;SPV=0.0018753;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:20,10:24,4 +chr6 74438585 . AT A 0 PASS DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,2:11,2 +chr6 75137886 . A T 0 PASS DP=100;GPV=1;SPV=0.00022955;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:24,10:20,4 +chr6 75456565 . C CT 0 PASS DP=68;GPV=1;SPV=0.00056917;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:19,6:4,3 +chr6 75536160 . A T 0 PASS DP=18;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,4:0,1:0,3 +chr6 76272024 . CTT C 0 PASS DP=54;GPV=1;SPV=0.0056817;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:1,3:18,4 +chr6 77270294 . C T 0 PASS DP=58;GPV=1;SPV=0.0009357;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:12,5:11,7 +chr6 77561686 . G C 0 PASS DP=94;GPV=1;SPV=0.00032937;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:17,3:15,6 +chr6 79373616 . C T 0 PASS DP=104;GPV=1;SPV=6.6836e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:18,10:18,5 +chr6 80318686 . T TA 0 PASS DP=62;GPV=1;SPV=0.027805;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,8:15,5 +chr6 80806606 . G C 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,2:20,2 +chr6 81559728 . C A 0 PASS DP=87;GPV=1;SPV=0.0055147;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:18,3:18,4 +chr6 81612427 . G A 0 PASS DP=70;GPV=1;SPV=0.0054566;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:13,8:15,10 +chr6 82422987 . A T 0 PASS DP=88;GPV=1;SPV=0.00070597;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:14,6:23,5 +chr6 85872303 . TTC T 0 PASS DP=42;GPV=1;SPV=0.037674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,9:4,2:14,7 +chr6 86090284 . CTT C 0 PASS DP=79;GPV=1;SPV=0.039205;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,2:20,2 +chr6 86167786 . A T 0 PASS DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:16,3:17,11 +chr6 86743844 . TG T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,2:13,2 +chr6 89845243 . ATG A 0 PASS DP=30;GPV=1;SPV=0.016999;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:5,9:2,1 +chr6 90473373 . C CTG 0 PASS DP=54;GPV=1;SPV=0.043685;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:10,6:9,2 +chr6 90964127 . TATATACTAC T 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:2,2:11,2 +chr6 91841142 . T C 0 PASS DP=58;GPV=1;SPV=0.045802;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:7,2:15,4 +chr6 93015866 . TCCTCTGTAAAGAG T 0 PASS DP=98;GPV=1;SPV=0.0028658;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:22,5:19,3 +chr6 94917868 . C CA 0 PASS DP=67;GPV=1;SPV=0.027604;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,2:11,4 +chr6 95121561 . G A 0 PASS DP=45;GPV=1;SPV=0.0054024;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:9,3:7,4 +chr6 95323596 . C T 0 PASS DP=92;GPV=1;SPV=0.0014181;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:28,6:14,5 +chr6 95601716 . ATT A 0 PASS DP=34;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:7,2:6,2 +chr6 96136242 . T A 0 PASS DP=87;GPV=1;SPV=4.1533e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:16,6:17,9 +chr6 96411350 . G A 0 PASS DP=92;GPV=1;SPV=0.00019202;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:14,3:22,9 +chr6 96594227 . TTATATATATATA T 0 PASS DP=44;GPV=1;SPV=0.20757;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,11:6,8:8,3 +chr6 97091981 . C T 0 PASS DP=69;GPV=1;SPV=0.05132;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,4:9,2:4,2 +chr6 98623447 . G A 0 PASS DP=76;GPV=1;SPV=0.00047803;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:17,4:15,9 +chr6 100497438 . T C 0 PASS DP=84;GPV=1;SPV=0.00069443;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:17,3:16,7 +chr6 100659197 . G T 0 PASS DP=94;GPV=1;SPV=0.00035126;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:45,17:25,6:20,11 +chr6 102463894 . C A 0 PASS DP=31;GPV=1;SPV=0.0083313;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:5,7:6,4 +chr6 102757247 . A C 0 PASS DP=97;GPV=1;SPV=0.0025743;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:18,6:25,3 +chr6 103465401 . C G 0 PASS DP=89;GPV=1;SPV=7.238e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:16,5:17,8 +chr6 103999545 . C A 0 PASS DP=89;GPV=1;SPV=8.6514e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:20,5:10,6 +chr6 104020542 . A G 0 PASS DP=79;GPV=1;SPV=0.032802;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,5:17,3 +chr6 105542764 . C CTTTTTTT 0 PASS DP=32;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,7:7,6:6,1 +chr6 110270837 . C CT 0 PASS DP=47;GPV=1;SPV=0.018907;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:12,5:7,1 +chr6 111058932 . C CTT 0 PASS DP=59;GPV=1;SPV=0.0015829;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,12:11,7:8,5 +chr6 113582269 . T A 0 PASS DP=63;GPV=1;SPV=0.056492;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:16,2:18,4 +chr6 114320954 . G A 0 PASS DP=66;GPV=1;SPV=4.5866e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:9,6:11,6 +chr6 114913348 . T A 0 PASS DP=106;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:5,4:3,3:2,1 +chr6 117069620 . A G 0 PASS DP=46;GPV=1;SPV=0.0057488;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:8,7:8,10 +chr6 117738740 . TA T 0 PASS DP=38;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,6:6,1 +chr6 118519466 . GTGTGT G 0 PASS DP=28;GPV=1;SPV=0.016499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:5,5:1,1 +chr6 118760105 . G A 0 PASS DP=79;GPV=1;SPV=0.00073099;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:14,11:21,2 +chr6 122228508 . G A 0 PASS DP=103;GPV=1;SPV=0.0017182;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:49,11:22,8:27,3 +chr6 122353620 . A T 0 PASS DP=95;GPV=1;SPV=0.00029045;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:39,12:21,5:18,7 +chr6 124139079 . A ATTTTTTT 0 PASS DP=35;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,10:4,7:4,3 +chr6 124658961 . A T 0 PASS DP=76;GPV=1;SPV=0.020406;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,2:17,3 +chr6 124687519 . TAC T 0 PASS DP=40;GPV=1;SPV=0.04484;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,6:8,1 +chr6 128291921 . C T 0 PASS DP=102;GPV=1;SPV=0.0034056;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:19,2:21,5 +chr6 129055186 . TTA T 0 PASS DP=71;GPV=1;SPV=0.080505;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,4:17,1:17,3 +chr6 130728750 . C CAAAAAAAA 0 PASS DP=63;GPV=1;SPV=0.010573;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,10:13,9:7,1 +chr6 131499479 . G GT 0 PASS DP=29;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,4:5,1:1,3 +chr6 131559893 . C CT 0 PASS DP=67;GPV=1;SPV=0.0060843;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,13:13,6:11,7 +chr6 133394282 . GTGTTTTTTTTTTTT G 0 PASS DP=32;GPV=1;SPV=0.015103;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,7:5,6:1,1 +chr6 133644593 . G A 0 PASS DP=68;GPV=1;SPV=0.00076721;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:19,6:9,6 +chr6 136369356 . T C 0 PASS DP=123;GPV=1;SPV=0.00015018;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:50,12:30,7:20,5 +chr6 138853256 . G A 0 PASS DP=104;GPV=1;SPV=0.00015449;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:14,7:29,6 +chr6 139341552 . A T 0 PASS DP=86;GPV=1;SPV=0.0013696;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,9:10,5:24,4 +chr6 141441319 . T G 0 PASS DP=70;GPV=1;SPV=0.032222;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:14,3:16,8 +chr6 142818711 . G GA 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:15,3:5,2 +chr6 142818723 . A G 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,3:6,1 +chr6 142908854 . C CAAA 0 PASS DP=69;GPV=1;SPV=0.0010314;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:13,16:10,13:3,3 +chr6 145301406 . C T 0 PASS DP=92;GPV=1;SPV=0.0012682;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:20,5:17,4 +chr6 148326414 . C T 0 PASS DP=36;GPV=1;SPV=0.0098884;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:4,5:4,1 +chr6 148482688 . A ATTTTTTTTTT 0 PASS DP=60;GPV=1;SPV=0.044564;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,9:16,5:11,4 +chr6 149915078 . C CCTTTT 0 PASS DP=35;GPV=1;SPV=0.10911;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:16,2:3,4 +chr6 150833044 . T A 0 PASS DP=68;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,2:5,1:2,1 +chr6 153349342 . CA C 0 PASS DP=66;GPV=1;SPV=0.01339;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:24,3:8,5 +chr6 153496288 . C A 0 PASS DP=94;GPV=1;SPV=0.00014589;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:22,10:14,2 +chr6 154331405 . A AAGAAAGAAAGAAAGAAAGAG 0 PASS DP=75;GPV=1;SPV=0.049488;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,6:27,2:8,4 +chr6 154687498 . A G 0 PASS DP=46;GPV=1;SPV=0.058895;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,3:12,2 +chr6 154812292 . C CT 0 PASS DP=30;GPV=1;SPV=0.029349;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:8,7:4,1 +chr6 156003552 . A G 0 PASS DP=92;GPV=1;SPV=0.0017721;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:19,4:22,6 +chr6 157279320 . A AAG 0 PASS DP=84;GPV=1;SPV=0.018965;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:19,3:23,4 +chr6 157522730 . CTCCTCCCTCCCTCCCTTTCT C 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:1,2:8,3 +chr6 158761301 . C CTTTTTT 0 PASS DP=51;GPV=1;SPV=0.099229;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,5:18,4:8,1 +chr6 159010200 . T C 0 PASS DP=59;GPV=1;SPV=0.040224;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:6,1:21,4 +chr6 159133753 . T C 0 PASS DP=65;GPV=1;SPV=0.04992;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,7:9,1:18,6 +chr6 160872501 . C CTTTTCT 0 PASS DP=31;GPV=1;SPV=0.019162;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,3:8,4 +chr6 162021463 . T A 0 PASS DP=58;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,4:9,3:5,1 +chr6 162418613 . A AGTGTGTGTGTGTGTGTGTGTGT 0 PASS DP=61;GPV=1;SPV=0.046347;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,6:14,4:9,2 +chr6 162612597 . CAAAAA C 0 PASS DP=58;GPV=1;SPV=0.0073681;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:16,11:5,4 +chr6 162658671 . AAAG A 0 PASS DP=88;GPV=1;SPV=0.00483;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:36,21:13,7:23,14 +chr6 164370462 . TA T 0 PASS DP=82;GPV=1;SPV=0.00012362;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,11:6,3:12,8 +chr6 164513819 . G T 0 PASS DP=44;GPV=1;SPV=0.045025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,3:5,2 +chr6 164848823 . G A 0 PASS DP=93;GPV=1;SPV=0.00016948;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,4:13,5 +chr6 165136817 . C G 0 PASS DP=74;GPV=1;SPV=0.075844;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:25,2:15,3 +chr6 166164374 . C G 0 PASS DP=97;GPV=1;SPV=9.7731e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:18,9:18,3 +chr6 167376005 . T C 0 PASS DP=75;GPV=1;SPV=0.020267;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:11,8:16,3 +chr6 167941643 . A AG 0 PASS DP=27;GPV=1;SPV=0.024799;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,4:2,1 +chr6 168001615 . G A 0 PASS DP=55;GPV=1;SPV=0.00074754;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,12:7,3:9,9 +chr6 168560884 . A G 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr6 168589727 . G GCC 0 PASS DP=100;GPV=1;SPV=0.047311;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:28,3:17,6 +chr6 168589730 . G A 0 PASS DP=96;GPV=1;SPV=0.036692;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:24,5:15,8 +chr6 168911467 . C T 0 PASS DP=44;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,4:10,2:5,2 +chr6 170039884 . T C 0 PASS DP=52;GPV=1;SPV=0.13093;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,5:15,2:4,3 +chr6 170736435 . G A 0 PASS DP=47;GPV=1;SPV=0.21163;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:24,1:6,4 +chr7 1190285 . G GAGTC 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:17,1:11,3 +chr7 1408585 . A G 0 PASS DP=90;GPV=1;SPV=0.0012326;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:19,6:14,2 +chr7 2452593 . C T 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr7 2859404 . C CAT 0 PASS DP=34;GPV=1;SPV=0.021859;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,10:1,7:7,3 +chr7 2895183 . C CT 0 PASS DP=27;GPV=1;SPV=0.080632;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:9,5:3,1 +chr7 3280111 . C CT 0 PASS DP=54;GPV=1;SPV=0.012883;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:11,4:11,7 +chr7 4083708 . T TGCTC 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:0,1:15,7 +chr7 4598967 . G A 0 PASS DP=40;GPV=1;SPV=0.033483;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr7 6457972 . CT C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chr7 6745558 . T G 0 PASS DP=32;GPV=1;SPV=0.1893;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,4:5,3:10,1 +chr7 6757889 . G C 0 PASS DP=59;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:13,4:15,1 +chr7 9045935 . A ATT 0 PASS DP=33;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,4:10,1:5,3 +chr7 9143957 . A ATATATAAACATATATATATAAATATATG 0 PASS DP=41;GPV=1;SPV=0.047035;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:4,1:5,3 +chr7 9203198 . ATTTTTTTTTTTTTTTTTTTTTT A 0 PASS DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:7,1:5,3 +chr7 10723665 . C G 0 PASS DP=84;GPV=1;SPV=0.012866;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:19,11:10,7:9,4 +chr7 11179957 . TATATATAATGTATATATACATAATATATA T 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:3,1:20,4 +chr7 13148829 . CA C 0 PASS DP=44;GPV=1;SPV=0.039138;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,1:14,4 +chr7 13587394 . G GTT 0 PASS DP=68;GPV=1;SPV=0.0012561;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,17:11,8:9,9 +chr7 14259379 . TTCTC T 0 PASS DP=66;GPV=1;SPV=0.017938;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:13,4:15,2 +chr7 14418390 . T C 0 PASS DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:10,4:11,7 +chr7 15014868 . C CTTTT 0 PASS DP=31;GPV=1;SPV=0.0088578;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,7:0,5:1,2 +chr7 15406281 . CAT C 0 PASS DP=85;GPV=1;SPV=0.03714;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:42,9:15,5:27,4 +chr7 15735093 . C CA 0 PASS DP=47;GPV=1;SPV=0.017694;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,6:9,5:3,1 +chr7 16415707 . C T 0 PASS DP=68;GPV=1;SPV=0.0029154;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,6:16,4 +chr7 16990931 . C CTGTG 0 PASS DP=81;GPV=1;SPV=0.033577;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,11:16,9:14,2 +chr7 17752194 . G GT 0 PASS DP=72;GPV=1;SPV=0.0013728;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:14,9:18,3 +chr7 18706160 . C CT 0 PASS DP=34;GPV=1;SPV=0.082337;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:7,4:9,2 +chr7 19302139 . C CA 0 PASS DP=54;GPV=1;SPV=0.041838;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,5:14,4:9,1 +chr7 20661540 . C CTT 0 PASS DP=70;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,6:13,4:13,2 +chr7 20668664 . C A 0 PASS DP=134;GPV=1;SPV=0.035422;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:73,14:25,7:48,7 +chr7 22114012 . T C 0 PASS DP=55;GPV=1;SPV=0.016586;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:7,3:18,4 +chr7 23046402 . G A 0 PASS DP=63;GPV=1;SPV=0.0037629;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:15,11:4,3 +chr7 23637163 . AG A 0 PASS DP=34;GPV=1;SPV=0.039244;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr7 23690199 . A ATATATATAT 0 PASS DP=41;GPV=1;SPV=0.04287;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,9:4,4:11,5 +chr7 24355915 . CTA C 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:17,2:18,3 +chr7 24430732 . ATATATATAAATG A 0 PASS DP=65;GPV=1;SPV=0.064403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1 +chr7 25253506 . C T 0 PASS DP=92;GPV=1;SPV=0.0021281;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:21,3:12,4 +chr7 26083654 . C T 0 PASS DP=117;GPV=1;SPV=1.5421e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:41,22:23,12:18,10 +chr7 26962990 . TAAAAAAAAAAAA T 0 PASS DP=37;GPV=1;SPV=0.051628;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,7:11,1 +chr7 28057410 . T C 0 PASS DP=96;GPV=1;SPV=6.763e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:42,18:21,9:21,9 +chr7 28725645 . T TTAAA 0 PASS DP=89;GPV=1;SPV=0.047268;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,12:25,7:12,5 +chr7 29123628 . A T 0 PASS DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,1:5,3 +chr7 29784970 . A C 0 PASS DP=120;GPV=1;SPV=0.00038558;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:59,15:26,9:33,6 +chr7 29986717 . AT A 0 PASS DP=82;GPV=1;SPV=0.034293;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,12:24,4:13,8 +chr7 30766197 . A T 0 PASS DP=92;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,4:21,2:8,2 +chr7 32374118 . A G 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:19,4:1,0 +chr7 32954414 . CT C 0 PASS DP=38;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:4,2:6,2 +chr7 33695812 . T TTATATATATATATA 0 PASS DP=32;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:2,5:4,2 +chr7 34128086 . G A 0 PASS DP=104;GPV=1;SPV=3.0233e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:39,14:16,7:23,7 +chr7 34953728 . A G 0 PASS DP=108;GPV=1;SPV=0.047669;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:29,8:12,5:17,3 +chr7 36517204 . TTC T 0 PASS DP=56;GPV=1;SPV=0.02403;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:3,4:12,4 +chr7 37882605 . G A 0 PASS DP=56;GPV=1;SPV=0.047759;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,5:11,3:4,2 +chr7 39015837 . A ATT 0 PASS DP=32;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:2,3:1,2:1,1 +chr7 39015991 . A T 0 PASS DP=35;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:14,4:5,1 +chr7 39015997 . T TTATATATATTATATA 0 PASS DP=41;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:14,3:6,1 +chr7 43983807 . G A 0 PASS DP=74;GPV=1;SPV=0.03116;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:20,1:13,4 +chr7 44032112 . A T 0 PASS DP=69;GPV=1;SPV=0.023029;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:23,3:9,3 +chr7 45841359 . G T 0 PASS DP=90;GPV=1;SPV=4.0373e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:14,6:16,6 +chr7 46010128 . T G 0 PASS DP=44;GPV=1;SPV=0.1599;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,8:7,3:12,5 +chr7 46843617 . TA T 0 PASS DP=45;GPV=1;SPV=0.025986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,10:3,9:7,1 +chr7 48550265 . C CTTTTTTTTTTT 0 PASS DP=71;GPV=1;SPV=0.0040597;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:9,10:15,2 +chr7 48913634 . T G 0 PASS DP=71;GPV=1;SPV=0.047959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,7:16,1:15,6 +chr7 48922573 . T A 0 PASS DP=66;GPV=1;SPV=0.0031611;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,4:13,4 +chr7 49014897 . C T 0 PASS DP=102;GPV=1;SPV=1.4291e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:41,18:28,9:13,9 +chr7 49032613 . C T 0 PASS DP=90;GPV=1;SPV=0.00054309;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:21,5:16,6 +chr7 52476780 . G C 0 PASS DP=71;GPV=1;SPV=0.067259;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,5:11,3:14,2 +chr7 52562752 . C CAAA 0 PASS DP=63;GPV=1;SPV=0.045845;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,8:20,7:6,1 +chr7 53458023 . G C 0 PASS DP=115;GPV=1;SPV=0.00010387;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:57,21:29,12:28,9 +chr7 53700155 . A T 0 PASS DP=95;GPV=1;SPV=6.5776e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:14,9:16,9 +chr7 53761057 . G T 0 PASS DP=95;GPV=1;SPV=0.00048809;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:23,6:18,6 +chr7 54397052 . T G 0 PASS DP=59;GPV=1;SPV=0.06127;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:17,4:15,2 +chr7 54397100 . T TA 0 PASS DP=60;GPV=1;SPV=0.026658;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:12,5:18,2 +chr7 54397143 . T TA 0 PASS DP=73;GPV=1;SPV=0.0071548;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:11,6:21,7 +chr7 54416638 . A T 0 PASS DP=71;GPV=1;SPV=0.062192;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,6:10,2:7,4 +chr7 55323229 . A C 0 PASS DP=60;GPV=1;SPV=0.052719;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,5:14,2:13,3 +chr7 56736408 . A C 0 PASS DP=88;GPV=1;SPV=0.028989;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:17,2:20,5 +chr7 56736546 . G C 0 PASS DP=71;GPV=1;SPV=0.011899;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:17,1:19,8 +chr7 56802275 . T C 0 PASS DP=151;GPV=1;SPV=0.021192;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:65,16:38,6:27,10 +chr7 56870984 . C T 0 PASS DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:20,3:25,2 +chr7 56972510 . G T 0 PASS DP=136;GPV=1;SPV=0.02467;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:54,16:31,11:23,5 +chr7 57389185 . G A 0 PASS DP=109;GPV=1;SPV=5.8494e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:21,7:15,7 +chr7 59452090 . C G 0 PASS DP=57;GPV=1;SPV=0.13255;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:0,0:31,4 +chr7 60996788 . GAGATGAAA G 0 PASS DP=185;GPV=1;SPV=0.0069242;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:91,11:58,9:33,2 +chr7 61247396 . G A 0 PASS DP=78;GPV=1;SPV=5.4574e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,8:14,5 +chr7 61381733 . T C 0 PASS DP=82;GPV=1;SPV=0.011433;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:16,7:20,3 +chr7 63759651 . C T 0 PASS DP=66;GPV=1;SPV=0.043658;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:0,1:27,3 +chr7 64254999 . C CAAA 0 PASS DP=55;GPV=1;SPV=0.0013639;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,10:3,9:5,1 +chr7 65123873 . T C 0 PASS DP=119;GPV=1;SPV=0.035299;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:23,1:35,7 +chr7 65622845 . C T 0 PASS DP=82;GPV=1;SPV=0.016132;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:24,13:12,9:12,4 +chr7 66421225 . C CAA 0 PASS DP=51;GPV=1;SPV=0.010685;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,12:10,10:6,2 +chr7 66562091 . AG A 0 PASS DP=77;GPV=1;SPV=0.048716;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,1:13,4 +chr7 66598828 . T TCTGCTGCTGCTG 0 PASS DP=49;GPV=1;SPV=0.0027565;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,13:6,9:4,4 +chr7 67180423 . TA T 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:10,3:14,1 +chr7 67252893 . C CAAAT 0 PASS DP=83;GPV=1;SPV=3.1103e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:26,26:12,17:14,9 +chr7 67409850 . TTC T 0 PASS DP=40;GPV=1;SPV=0.036036;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,0:12,4 +chr7 67435937 . CT C 0 PASS DP=35;GPV=1;SPV=0.00015256;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:3,14:1,11:2,3 +chr7 67548523 . C T 0 PASS DP=93;GPV=1;SPV=0.0073893;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:22,3:22,5 +chr7 67903888 . T TA 0 PASS DP=74;GPV=1;SPV=0.036173;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:21,9:10,1 +chr7 67989694 . T TAAAAAAAAAA 0 PASS DP=51;GPV=1;SPV=0.12446;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,5:15,4:13,1 +chr7 68600503 . C CT 0 PASS DP=63;GPV=1;SPV=0.041607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,9:10,5:12,4 +chr7 70084077 . C CA 0 PASS DP=78;GPV=1;SPV=3.4423e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:14,6:13,8 +chr7 71290347 . G A 0 PASS DP=108;GPV=1;SPV=9.1458e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:50,18:30,11:20,7 +chr7 72299689 . C CT 0 PASS DP=48;GPV=1;SPV=0.0095364;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:6,8:7,1 +chr7 72593820 . TAAA T 0 PASS DP=41;GPV=1;SPV=0.020128;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,6:3,1 +chr7 72756201 . T TTTTTATTTTA 0 PASS DP=93;GPV=1;SPV=0.037443;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:30,14:7,10:23,4 +chr7 72876661 . C CAA 0 PASS DP=28;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,3:4,1 +chr7 73211608 . C CTT 0 PASS DP=66;GPV=1;SPV=0.035907;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:16,6:6,1 +chr7 74016494 . C CT 0 PASS DP=26;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr7 74671079 . CT C 0 PASS DP=34;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:7,4:3,1 +chr7 74861501 . C CT 0 PASS DP=35;GPV=1;SPV=0.031121;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,9:4,8:4,1 +chr7 74955968 . G T 0 PASS DP=42;GPV=1;SPV=0.043618;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:7,1:9,6 +chr7 74960683 . T A 0 PASS DP=60;GPV=1;SPV=0.037117;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,10:10,7:11,3 +chr7 76046341 . C T 0 PASS DP=35;GPV=1;SPV=0.023045;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,9:3,4:4,5 +chr7 76088684 . CA C 0 PASS DP=80;GPV=1;SPV=0.069135;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,4:15,3:12,1 +chr7 76262840 . GA G 0 PASS DP=70;GPV=1;SPV=0.079534;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:28,4:10,1 +chr7 76460515 . T C 0 PASS DP=46;GPV=1;SPV=0.19282;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,3:14,1 +chr7 76500368 . C G 0 PASS DP=73;GPV=1;SPV=0.031994;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:10,1:15,8 +chr7 76622297 . C T 0 PASS DP=101;GPV=1;SPV=0.016746;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:25,1:21,8 +chr7 76641285 . C T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:9,2:15,2 +chr7 76969216 . T G 0 PASS DP=55;GPV=1;SPV=0.010634;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:2,6:12,3 +chr7 76970542 . C T 0 PASS DP=122;GPV=1;SPV=0.023497;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:51,9:25,3:26,6 +chr7 78070630 . G A 0 PASS DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:24,1:8,3 +chr7 78430240 . C CTTTT 0 PASS DP=33;GPV=1;SPV=0.036419;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,5:6,3:6,2 +chr7 79625141 . T TATATA 0 PASS DP=69;GPV=1;SPV=0.044663;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:13,3:20,2 +chr7 79767092 . G A 0 PASS DP=115;GPV=1;SPV=4.326e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:49,16:24,9:25,7 +chr7 80152558 . CT C 0 PASS DP=45;GPV=1;SPV=0.026716;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:14,6:3,2 +chr7 80964594 . A T 0 PASS DP=71;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:4,5:2,3:2,2 +chr7 81736894 . G GGTGTGTGTGTGTGT 0 PASS DP=63;GPV=1;SPV=0.018698;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4 +chr7 82322451 . C CAA 0 PASS DP=43;GPV=1;SPV=0.019737;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,8:8,7:2,1 +chr7 82512544 . G A 0 PASS DP=101;GPV=1;SPV=1.8109e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:37,20:18,10:19,10 +chr7 84736856 . A T 0 PASS DP=92;GPV=1;SPV=0.12591;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:27,4:19,1:8,3 +chr7 84750620 . G A 0 PASS DP=96;GPV=1;SPV=8.6302e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:17,6:15,13 +chr7 85481067 . A ATGTG 0 PASS DP=46;GPV=1;SPV=0.0020696;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:6,6:11,4 +chr7 85717463 . CT C 0 PASS DP=51;GPV=1;SPV=0.0096405;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:16,9:11,8:5,1 +chr7 87350028 . T C 0 PASS DP=106;GPV=1;SPV=2.9752e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:23,6:20,10 +chr7 87766872 . G A 0 PASS DP=92;GPV=1;SPV=0.017595;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:21,5:25,2 +chr7 88604328 . G A 0 PASS DP=79;GPV=1;SPV=0.00034961;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:18,8:12,3 +chr7 91922242 . AAAAAAAC A 0 PASS DP=42;GPV=1;SPV=0.0050167;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:7,4:10,7 +chr7 93405435 . T G 0 PASS DP=74;GPV=1;SPV=0.017612;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:13,4:20,2 +chr7 96868173 . A ATTT 0 PASS DP=33;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,6:5,5:6,1 +chr7 96898974 . T TTTATTATTATTATTATTATTA 0 PASS DP=61;GPV=1;SPV=0.0063671;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:7,6:11,6 +chr7 97712859 . C T 0 PASS DP=90;GPV=1;SPV=1.9538e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:20,10:16,9 +chr7 98420585 . G GTA 0 PASS DP=77;GPV=1;SPV=0.036437;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:14,5:19,2 +chr7 99180901 . A C 0 PASS DP=21;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:4,1:2,1 +chr7 100457801 . A ATGTGTGTG 0 PASS DP=40;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:5,3:4,2 +chr7 100998245 . C T 0 PASS DP=20;GPV=1;SPV=0.18947;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:1,1:6,1 +chr7 101140194 . A G 0 PASS DP=42;GPV=1;SPV=0.047842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,2:12,2 +chr7 101140236 . GAA G 0 PASS DP=19;GPV=1;SPV=0.032508;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,1:0,3 +chr7 101146056 . C A 0 PASS DP=98;GPV=1;SPV=0.0017227;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:28,7:20,5 +chr7 101241637 . C CTT 0 PASS DP=49;GPV=1;SPV=0.027296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:13,6:3,1 +chr7 102547818 . GAA G 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr7 102554519 . G A 0 PASS DP=222;GPV=1;SPV=0.0040935;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:104,22:24,12:80,10 +chr7 102570134 . GA G 0 PASS DP=44;GPV=1;SPV=0.034481;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:4,2:10,4 +chr7 102572592 . T C 0 PASS DP=588;GPV=1;SPV=0.044139;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:304:264,40:139,20:125,20 +chr7 102665519 . T G 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:5,1:19,3 +chr7 102668693 . G A 0 PASS DP=160;GPV=1;SPV=0.037009;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:84,19:39,10:45,9 +chr7 105071580 . GTGTATATATATATA G 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:5,3:8,1 +chr7 105455567 . G C 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,3:13,1 +chr7 105727777 . T C 0 PASS DP=39;GPV=1;SPV=0.072836;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,7:7,4:9,3 +chr7 107065336 . G A 0 PASS DP=47;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,3:3,2:3,1 +chr7 107158258 . TAGAA T 0 PASS DP=95;GPV=1;SPV=0.01609;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:25,2:18,4 +chr7 107158264 . G C 0 PASS DP=96;GPV=1;SPV=0.011583;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:24,2:17,4 +chr7 107909839 . CT C 0 PASS DP=55;GPV=1;SPV=0.035511;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,9:12,6:6,3 +chr7 108549354 . T G 0 PASS DP=107;GPV=1;SPV=0.0010134;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:20,7:26,3 +chr7 108891130 . GTTTTT G 0 PASS DP=32;GPV=1;SPV=0.1371;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:13,5:4,1 +chr7 109038790 . CT C 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:9,3:4,1 +chr7 109751577 . GTTTTTTT G 0 PASS DP=27;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:6,3:1,1 +chr7 111537527 . CT C 0 PASS DP=41;GPV=1;SPV=0.0037321;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,8:5,1 +chr7 116562964 . A AAAG 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:20,3:7,1 +chr7 116562978 . GGA G 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:22,3:6,1 +chr7 117529217 . A G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:4,4:16,1 +chr7 119646481 . G A 0 PASS DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,4:11,8 +chr7 119654833 . G GA 0 PASS DP=82;GPV=1;SPV=0.0057229;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:19,7:20,2 +chr7 120050531 . T A 0 PASS DP=59;GPV=1;SPV=0.028465;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:9,3:16,2 +chr7 120167623 . G A 0 PASS DP=122;GPV=1;SPV=2.0285e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:46,14:28,7:18,7 +chr7 120265704 . G A 0 PASS DP=88;GPV=1;SPV=0.039155;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:22,3:20,2 +chr7 121380733 . T TTATATATATATATATATATATA 0 PASS DP=50;GPV=1;SPV=0.14084;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:17,2:9,2 +chr7 121395252 . G GATAC 0 PASS DP=91;GPV=1;SPV=0.031169;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,5:21,3:14,2 +chr7 123990564 . G A 0 PASS DP=94;GPV=1;SPV=0.0018214;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:16,1:17,6 +chr7 124784842 . CTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,3:3,1 +chr7 124991025 . G A 0 PASS DP=119;GPV=1;SPV=0.00024999;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:58,16:33,4:25,12 +chr7 125143216 . CTT C 0 PASS DP=30;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:6,5:4,2 +chr7 125289405 . G GATATATATATATATATATAT 0 PASS DP=23;GPV=1;SPV=0.0055944;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:1,8:1,7:0,1 +chr7 126763472 . TACACAC T 0 PASS DP=53;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,2:3,1:1,1 +chr7 127029006 . A C 0 PASS DP=93;GPV=1;SPV=0.00047793;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:23,5:15,6 +chr7 127125765 . A AACACACACACAC 0 PASS DP=46;GPV=1;SPV=0.0015492;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,9:4,6:1,3 +chr7 129114664 . C T 0 PASS DP=89;GPV=1;SPV=8.8849e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:18,4:14,8 +chr7 129659073 . C CTTTT 0 PASS DP=50;GPV=1;SPV=0.016464;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:17,3:3,3 +chr7 129696084 . A AAAC 0 PASS DP=38;GPV=1;SPV=0.032005;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:8,2:1,3 +chr7 129790556 . T C 0 PASS DP=86;GPV=1;SPV=0.070652;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:10,5:3,1:7,4 +chr7 129884416 . C CA 0 PASS DP=39;GPV=1;SPV=0.036457;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,7:8,6:8,1 +chr7 130257636 . C T 0 PASS DP=23;GPV=1;SPV=0.019231;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,4:0,0:3,4 +chr7 131189547 . C A 0 PASS DP=108;GPV=1;SPV=0.083225;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:25,5:11,2:14,3 +chr7 131227477 . C CTT 0 PASS DP=67;GPV=1;SPV=0.086167;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,2:21,2 +chr7 131227493 . TTC T 0 PASS DP=66;GPV=1;SPV=0.069705;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,5:12,3:22,2 +chr7 132217179 . A T 0 PASS DP=101;GPV=1;SPV=0.0002238;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:22,5:19,7 +chr7 132615927 . A ATCTCTCTCTCTCTCTCTC 0 PASS DP=47;GPV=1;SPV=0.25076;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:8,1:21,3 +chr7 133247882 . AT A 0 PASS DP=50;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:14,7:8,3 +chr7 133737909 . C CTTTT 0 PASS DP=30;GPV=1;SPV=0.27368;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,7:2,5:9,2 +chr7 135309610 . C CTT 0 PASS DP=37;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:5,5:7,3 +chr7 135819017 . T C 0 PASS DP=112;GPV=1;SPV=4.4906e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:50,18:26,7:24,11 +chr7 136191578 . C A 0 PASS DP=102;GPV=1;SPV=0.047407;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:25,10:14,5:11,5 +chr7 137792282 . C T 0 PASS DP=94;GPV=1;SPV=0.0071224;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:29,6:18,3 +chr7 138636470 . A AT 0 PASS DP=82;GPV=1;SPV=0.0019055;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:18,5:18,5 +chr7 138745963 . AT A 0 PASS DP=36;GPV=1;SPV=0.18039;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,2:13,2 +chr7 139905057 . T TTCTTTCTTTC 0 PASS DP=60;GPV=1;SPV=0.025917;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:14,1:10,4 +chr7 140266059 . A ATT 0 PASS DP=59;GPV=1;SPV=0.024063;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:14,7:7,2 +chr7 140961346 . C T 0 PASS DP=41;GPV=1;SPV=0.047956;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,1:10,4 +chr7 141432146 . CTTT C 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1 +chr7 142378361 . G GTT 0 PASS DP=85;GPV=1;SPV=0.033108;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:17,2:22,3 +chr7 142814163 . CTTTTTTTTTTTT C 0 PASS DP=34;GPV=1;SPV=0.0053554;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:2,6:5,2 +chr7 144318748 . G A 0 PASS DP=25;GPV=1;SPV=0.0068026;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,3:4,3 +chr7 145673910 . C CAAAAAAAAAA 0 PASS DP=52;GPV=1;SPV=0.022623;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,6:11,5:5,1 +chr7 146901870 . C CT 0 PASS DP=45;GPV=1;SPV=0.0068445;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:4,6:14,4 +chr7 147033176 . A G 0 PASS DP=37;GPV=1;SPV=0.05418;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,4:3,1:3,3 +chr7 147239929 . G C 0 PASS DP=106;GPV=1;SPV=0.00041262;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:31,10:17,3 +chr7 148598765 . G T 0 PASS DP=41;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,8:4,3:0,5 +chr7 149542686 . C CA 0 PASS DP=56;GPV=1;SPV=0.0042972;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,12:14,11:3,1 +chr7 150007999 . C G 0 PASS DP=128;GPV=1;SPV=0.028806;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:55,9:29,1:26,8 +chr7 150797514 . G A 0 PASS DP=108;GPV=1;SPV=6.6865e-10;SS=2;SSC=91;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:30,27:17,18:13,9 +chr7 152238768 . T C 0 PASS DP=109;GPV=1;SPV=0.03511;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:47,14:23,7:24,7 +chr7 152480647 . A T 0 PASS DP=72;GPV=1;SPV=0.012115;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:21,3:14,5 +chr7 152511786 . C CT 0 PASS DP=48;GPV=1;SPV=0.024638;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:13,8:3,2 +chr7 152874515 . G GC 0 PASS DP=45;GPV=1;SPV=0.16482;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:2,2:25,3 +chr7 152938560 . C T 0 PASS DP=94;GPV=1;SPV=8.7178e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:20,4:16,9 +chr7 153762484 . C T 0 PASS DP=95;GPV=1;SPV=0.0056915;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:18,4:22,3 +chr7 153845294 . G A 0 PASS DP=97;GPV=1;SPV=0.001855;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:46,11:27,5:19,6 +chr7 154776250 . T C 0 PASS DP=86;GPV=1;SPV=0.047725;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:32,4:9,7 +chr7 155050527 . T TACACAC 0 PASS DP=71;GPV=1;SPV=0.038903;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,12:20,10:11,2 +chr7 155111533 . C CT 0 PASS DP=28;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:2,5:7,1 +chr7 155539625 . G A 0 PASS DP=96;GPV=1;SPV=3.4257e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:21,7:16,8 +chr7 156024264 . C A 0 PASS DP=118;GPV=1;SPV=0.00017676;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:27,9:29,7 +chr7 156389357 . C T 0 PASS DP=114;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:28,2:30,6 +chr7 157498375 . C T 0 PASS DP=56;GPV=1;SPV=0.037307;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:10,3:15,2 +chr7 157982292 . A G 0 PASS DP=25;GPV=1;SPV=0.069881;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,2:6,4 +chr7 158089591 . A T 0 PASS DP=104;GPV=1;SPV=0.018729;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:27,4:14,5 +chr7 158166518 . C T 0 PASS DP=41;GPV=1;SPV=0.039387;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:13,5:6,1 +chr7 158320111 . ACACACACACAGCCTCCCT A 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,1:0,3 +chr8 283011 . G A 0 PASS DP=37;GPV=1;SPV=0.26049;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:21,3:18,1:3,2 +chr8 403891 . A G 0 PASS DP=55;GPV=1;SPV=0.092258;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:11,1:16,3 +chr8 1017526 . C CTG 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:12,3:7,2 +chr8 1104182 . G T 0 PASS DP=82;GPV=1;SPV=8.0217e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:20,10:13,6 +chr8 1275848 . T TAA 0 PASS DP=42;GPV=1;SPV=0.2122;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:7,3:18,1 +chr8 1275920 . AAT A 0 PASS DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,1:10,5 +chr8 2120675 . T A 0 PASS DP=24;GPV=1;SPV=0.020362;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,5:0,2:4,3 +chr8 2516725 . T A 0 PASS DP=106;GPV=1;SPV=6.5335e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:33,21:17,8:16,13 +chr8 3068584 . C T 0 PASS DP=98;GPV=1;SPV=0.00020622;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:41,13:26,7:15,6 +chr8 3390899 . G A 0 PASS DP=96;GPV=1;SPV=6.289e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:40,16:26,8:14,8 +chr8 3906261 . G T 0 PASS DP=91;GPV=1;SPV=0.0010064;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:14,7:26,4 +chr8 4409642 . CT C 0 PASS DP=39;GPV=1;SPV=0.03989;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,8:2,7:2,1 +chr8 5269651 . G A 0 PASS DP=94;GPV=1;SPV=0.0049996;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:21,8:24,1 +chr8 5624850 . T TAA 0 PASS DP=41;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,4:12,3:7,1 +chr8 5655618 . A C 0 PASS DP=93;GPV=1;SPV=0.0012714;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,3:20,7 +chr8 6113421 . TACTATATACAGTGTATATACACTATAGAC T 0 PASS DP=42;GPV=1;SPV=0.32127;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:16,2:12,2 +chr8 6261270 . C T 0 PASS DP=85;GPV=1;SPV=0.014917;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:18,2:23,5 +chr8 6768735 . GAA G 0 PASS DP=67;GPV=1;SPV=0.029045;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,7:14,5:8,2 +chr8 7207095 . C G 0 PASS DP=52;GPV=1;SPV=0.0093016;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:8,10:13,5 +chr8 7376048 . T C 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chr8 7376049 . G A 0 PASS DP=53;GPV=1;SPV=0.098182;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:12,2:10,1 +chr8 7482193 . A G 0 PASS DP=131;GPV=1;SPV=0.016522;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:56,18:31,5:25,13 +chr8 7583423 . C T 0 PASS DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0 +chr8 7801383 . C A 0 PASS DP=74;GPV=1;SPV=0.00038792;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:23,14:5,4 +chr8 7818239 . T G 0 PASS DP=26;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:11,5:1,1 +chr8 8057148 . A C 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr8 8067091 . G A 0 PASS DP=213;GPV=1;SPV=0.024755;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:92,14:54,4:38,10 +chr8 8142268 . A T 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:0,0:14,4 +chr8 8183755 . C T 0 PASS DP=67;GPV=1;SPV=0.077596;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:16,4:20,1 +chr8 8313737 . T A 0 PASS DP=96;GPV=1;SPV=1.4277e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:13,9:20,5 +chr8 8436016 . G GT 0 PASS DP=27;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,3:5,1 +chr8 8447410 . CTT C 0 PASS DP=36;GPV=1;SPV=0.07699;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,5:9,1:6,4 +chr8 8558379 . C A 0 PASS DP=115;GPV=1;SPV=4.326e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:49,16:13,5:36,11 +chr8 8879564 . C T 0 PASS DP=89;GPV=1;SPV=8.3554e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:25,5:11,10 +chr8 9973961 . G A 0 PASS DP=66;GPV=1;SPV=0.040392;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:16,5:12,2 +chr8 10048938 . GT G 0 PASS DP=96;GPV=1;SPV=0.00070234;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:43,12:23,9:20,3 +chr8 11700075 . T C 0 PASS DP=112;GPV=1;SPV=0.00053331;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:24,8:24,3 +chr8 12001900 . C CTT 0 PASS DP=48;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:3,4:0,3:3,1 +chr8 12209513 . C G 0 PASS DP=137;GPV=1;SPV=0.040163;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:60,15:28,9:32,6 +chr8 12286375 . T C 0 PASS DP=37;GPV=1;SPV=0.11076;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr8 12442343 . A T 0 PASS DP=65;GPV=1;SPV=0.040934;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:14,2:12,7 +chr8 12522519 . CTCT C 0 PASS DP=187;GPV=1;SPV=0.028869;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:89,20:35,10:54,10 +chr8 12555537 . C A 0 PASS DP=266;GPV=1;SPV=0.049651;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:118,25:41,9:77,16 +chr8 12556968 . G A 0 PASS DP=279;GPV=1;SPV=0.036536;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:117,23:67,10:50,13 +chr8 12559343 . G A 0 PASS DP=281;GPV=1;SPV=0.010149;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:125,32:59,14:66,18 +chr8 12566962 . C G 0 PASS DP=290;GPV=1;SPV=0.040469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:131,24:64,8:67,16 +chr8 12590428 . G A 0 PASS DP=309;GPV=1;SPV=0.044471;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:134,23:58,12:76,11 +chr8 12591444 . G A 0 PASS DP=231;GPV=1;SPV=0.011397;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:94,26:40,11:54,15 +chr8 12774582 . G A 0 PASS DP=55;GPV=1;SPV=0.042981;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,5:8,2 +chr8 14948879 . C T 0 PASS DP=74;GPV=1;SPV=0.019247;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:19,9:14,4:5,5 +chr8 15648068 . C T 0 PASS DP=94;GPV=1;SPV=7.0149e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,17:20,7:14,10 +chr8 15782334 . C T 0 PASS DP=117;GPV=1;SPV=1.8338e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:51,19:26,9:25,10 +chr8 16122843 . CT C 0 PASS DP=41;GPV=1;SPV=0.014951;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:11,9:4,4 +chr8 16707079 . C T 0 PASS DP=20;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,2:2,1:4,1 +chr8 16947855 . G C 0 PASS DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:24,4:11,1 +chr8 18509669 . G A 0 PASS DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:11,7:16,7 +chr8 21813654 . G A 0 PASS DP=67;GPV=1;SPV=0.046916;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2 +chr8 22592057 . T A 0 PASS DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:10,2:21,2 +chr8 22860188 . ATATG A 0 PASS DP=93;GPV=1;SPV=0.020178;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,1:16,6 +chr8 23374399 . G A 0 PASS DP=85;GPV=1;SPV=0.010763;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:26,4:18,5 +chr8 23652544 . CCTTCCTTCCTTTCTTT C 0 PASS DP=59;GPV=1;SPV=0.017837;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,3:13,6 +chr8 25903607 . G T 0 PASS DP=113;GPV=1;SPV=0.00089077;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:21,6:24,3 +chr8 26731248 . C CA 0 PASS DP=52;GPV=1;SPV=0.095044;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:23,4:4,1 +chr8 28881475 . GA G 0 PASS DP=81;GPV=1;SPV=0.048964;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:44,6:28,2:16,4 +chr8 30046474 . TAAAAAAA T 0 PASS DP=29;GPV=1;SPV=0.23663;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:7,2:9,2 +chr8 30089770 . A C 0 PASS DP=82;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:1,2:0,0:1,2 +chr8 30173970 . A G 0 PASS DP=69;GPV=1;SPV=0.016248;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,5:16,1 +chr8 30692495 . C CT 0 PASS DP=32;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,7:4,5:4,2 +chr8 32389771 . T A 0 PASS DP=83;GPV=1;SPV=0.0030396;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:14,2:17,5 +chr8 32412421 . TAC T 0 PASS DP=41;GPV=1;SPV=0.34673;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,3:13,1:11,2 +chr8 35523578 . CT C 0 PASS DP=54;GPV=1;SPV=0.023028;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:24,9:5,3 +chr8 38574646 . T G 0 PASS DP=112;GPV=1;SPV=0.019217;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:37,3:21,4 +chr8 39749587 . G A 0 PASS DP=97;GPV=1;SPV=0.036723;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:31,4:20,2 +chr8 40067256 . TTC T 0 PASS DP=48;GPV=1;SPV=0.089038;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:5,1:14,2 +chr8 40332741 . CT C 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:14,4:6,1 +chr8 40680701 . T C 0 PASS DP=73;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:15,4:5,3:10,1 +chr8 42203992 . T C 0 PASS DP=60;GPV=1;SPV=0.01549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,9:8,1:11,8 +chr8 44933113 . A G 0 PASS DP=25;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:5,2:1,1 +chr8 48746954 . G A 0 PASS DP=95;GPV=1;SPV=0.00018197;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:18,9:21,4 +chr8 49787630 . G A 0 PASS DP=94;GPV=1;SPV=0.00012803;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:22,4:18,11 +chr8 51349171 . GT G 0 PASS DP=98;GPV=1;SPV=0.092709;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:32,4:16,3:16,1 +chr8 54478540 . C CTTT 0 PASS DP=48;GPV=1;SPV=0.010436;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,7:10,3 +chr8 55750541 . C CTT 0 PASS DP=43;GPV=1;SPV=0.0033813;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,7:6,1 +chr8 56633257 . CT C 0 PASS DP=33;GPV=1;SPV=0.021739;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,6:5,5:4,1 +chr8 61166136 . T A 0 PASS DP=78;GPV=1;SPV=0.027483;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:14,3:24,3 +chr8 61262000 . G A 0 PASS DP=92;GPV=1;SPV=0.026618;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:21,3:25,7 +chr8 61752495 . CA C 0 PASS DP=49;GPV=1;SPV=0.021168;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:7,4:14,2 +chr8 61752509 . C A 0 PASS DP=48;GPV=1;SPV=0.05461;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,3:15,1 +chr8 63017600 . C A 0 PASS DP=101;GPV=1;SPV=0.00028775;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:23,6:19,6 +chr8 63166003 . T C 0 PASS DP=94;GPV=1;SPV=3.2412e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:38,17:16,4:22,13 +chr8 63819075 . G A 0 PASS DP=86;GPV=1;SPV=0.00071194;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:15,8:21,3 +chr8 64040802 . C A 0 PASS DP=99;GPV=1;SPV=7.4953e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:34,20:17,11:17,9 +chr8 64549678 . A G 0 PASS DP=32;GPV=1;SPV=0.023574;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,6:5,2 +chr8 65596309 . G A 0 PASS DP=48;GPV=1;SPV=0.016761;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,6:5,1:7,5 +chr8 66851018 . G A 0 PASS DP=103;GPV=1;SPV=0.0080832;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:53,9:22,4:31,5 +chr8 67403755 . A G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr8 67468972 . C T 0 PASS DP=84;GPV=1;SPV=0.00017122;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:19,5:9,5 +chr8 67475817 . CCTTTCT C 0 PASS DP=38;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,6:2,2:12,4 +chr8 68095500 . AATAC A 0 PASS DP=79;GPV=1;SPV=0.012987;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:14,3:17,5 +chr8 68095521 . A T 0 PASS DP=74;GPV=1;SPV=0.016986;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:10,4:17,8 +chr8 68268006 . T G 0 PASS DP=30;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:2,2:7,3 +chr8 68525956 . C CTT 0 PASS DP=36;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:12,3:8,1 +chr8 70643527 . T A 0 PASS DP=93;GPV=1;SPV=4.5526e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:17,9:18,5 +chr8 72152181 . G A 0 PASS DP=76;GPV=1;SPV=0.014234;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:16,6:14,5 +chr8 73090922 . G A 0 PASS DP=93;GPV=1;SPV=0.00024465;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:24,6:15,7 +chr8 74802578 . C A 0 PASS DP=77;GPV=1;SPV=0.0015192;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:15,3:19,8 +chr8 75287608 . AAT A 0 PASS DP=81;GPV=1;SPV=0.093588;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:26,4:10,3:16,1 +chr8 75584552 . C G 0 PASS DP=83;GPV=1;SPV=0.00019435;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:17,6:11,4 +chr8 75644593 . A T 0 PASS DP=97;GPV=1;SPV=5.4584e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:11,8:23,4 +chr8 76731856 . C CATTATT 0 PASS DP=72;GPV=1;SPV=0.0060061;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:12,8:13,3 +chr8 77133292 . CT C 0 PASS DP=30;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:8,4:4,1 +chr8 77473407 . A G 0 PASS DP=45;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:7,2:3,1:4,1 +chr8 77486236 . G A 0 PASS DP=43;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,3:13,2 +chr8 79683371 . C CT 0 PASS DP=27;GPV=1;SPV=0.035837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,6:3,1 +chr8 80086101 . C CT 0 PASS DP=28;GPV=1;SPV=0.048309;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,6:4,1 +chr8 81980963 . TATATATA T 0 PASS DP=34;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:4,3:7,4 +chr8 84151550 . C T 0 PASS DP=114;GPV=1;SPV=0.00027199;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:54,15:36,8:18,7 +chr8 85180511 . CATATATATATATATAT C 0 PASS DP=38;GPV=1;SPV=0.0044521;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,10:3,7:2,3 +chr8 85654505 . G C 0 PASS DP=45;GPV=1;SPV=0.11779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:18,3:5,1 +chr8 85657690 . A G 0 PASS DP=733;GPV=1;SPV=0.037764;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:378:331,47:95,18:236,29 +chr8 85741876 . C G 0 PASS DP=812;GPV=1;SPV=0.020207;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:452:399,53:195,28:204,25 +chr8 86162635 . T TTA 0 PASS DP=25;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:4,4:2,1 +chr8 86162674 . A ATAATATATAT 0 PASS DP=29;GPV=1;SPV=0.030556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,4:2,1 +chr8 86162689 . T TTA 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:11,3:3,1 +chr8 86600776 . ATTTTTT A 0 PASS DP=46;GPV=1;SPV=0.039565;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,9:8,5:15,4 +chr8 88749707 . A G 0 PASS DP=77;GPV=1;SPV=0.0014381;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:28,8:20,3:8,5 +chr8 88830408 . ATATATGTACTATATATGCATGTATGCATC A 0 PASS DP=76;GPV=1;SPV=0.024749;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:17,8:22,5 +chr8 88867842 . ATATATATAGT A 0 PASS DP=22;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:4,2:4,2 +chr8 89753827 . T A 0 PASS DP=85;GPV=1;SPV=0.053564;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:50,7:26,3:24,4 +chr8 89753830 . ATATT A 0 PASS DP=87;GPV=1;SPV=0.058382;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:29,3:23,4 +chr8 90202884 . CTTT C 0 PASS DP=43;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,8:2,1 +chr8 92631352 . A AGT 0 PASS DP=65;GPV=1;SPV=0.036061;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,12:22,9:10,3 +chr8 95553955 . C T 0 PASS DP=56;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:19,4:12,1 +chr8 95581559 . G A 0 PASS DP=118;GPV=1;SPV=6.5448e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:18,2:26,10 +chr8 95625128 . C T 0 PASS DP=91;GPV=1;SPV=0.0020227;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:18,5:25,6 +chr8 98105121 . A C 0 PASS DP=55;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,2:2,1:5,1 +chr8 98115388 . CAAA C 0 PASS DP=46;GPV=1;SPV=0.031197;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,6:12,2 +chr8 98421016 . G A 0 PASS DP=95;GPV=1;SPV=0.0035237;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:25,6:21,4 +chr8 98680981 . C CT 0 PASS DP=36;GPV=1;SPV=0.008898;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:5,9:5,2 +chr8 98858323 . T TATAGAG 0 PASS DP=32;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:5,6:3,5:2,1 +chr8 101049459 . C T 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:0,2:19,3 +chr8 101592100 . C T 0 PASS DP=31;GPV=1;SPV=0.018648;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,5:1,1:2,4 +chr8 102371275 . T A 0 PASS DP=50;GPV=1;SPV=0.060124;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,5:8,4:5,1 +chr8 103059898 . C A 0 PASS DP=66;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:5,3:1,2:4,1 +chr8 103684539 . TTTTTATTTTATTTTATTTTA T 0 PASS DP=64;GPV=1;SPV=0.042981;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,7:6,4:12,3 +chr8 104549400 . C CT 0 PASS DP=52;GPV=1;SPV=0.010488;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:9,7:8,5 +chr8 106161086 . T A 0 PASS DP=78;GPV=1;SPV=0.0048593;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,5:18,4 +chr8 106704393 . CTTTTTTTTT C 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:3,3:6,2 +chr8 106984409 . G A 0 PASS DP=93;GPV=1;SPV=4.5526e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:15,5:20,9 +chr8 107033169 . A AAAAAAAAAAG 0 PASS DP=48;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,7:7,4:7,3 +chr8 108097991 . AGAAGGAAG A 0 PASS DP=37;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:13,3:6,1 +chr8 108098147 . AGAAGGAAGGAAGGAAG A 0 PASS DP=45;GPV=1;SPV=0.17137;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,4:20,1:1,3 +chr8 108614685 . A G 0 PASS DP=106;GPV=1;SPV=4.1184e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:41,14:18,5:23,9 +chr8 109608824 . G A 0 PASS DP=98;GPV=1;SPV=0.00011817;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:21,10:18,3 +chr8 110152082 . G A 0 PASS DP=30;GPV=1;SPV=0.020843;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:4,2:7,4 +chr8 113537715 . T A 0 PASS DP=81;GPV=1;SPV=0.002391;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:18,4:14,4 +chr8 116366082 . GGGAAGGAAGGAAGGAA G 0 PASS DP=44;GPV=1;SPV=0.044074;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,6:8,2 +chr8 116752665 . GAAGAAAGAAAGA G 0 PASS DP=58;GPV=1;SPV=0.039029;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:11,3:8,2 +chr8 117920671 . G A 0 PASS DP=82;GPV=1;SPV=0.00018514;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:17,5:14,7 +chr8 120078337 . CAA C 0 PASS DP=66;GPV=1;SPV=0.0049412;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:17,8:8,4 +chr8 120920575 . TTATA T 0 PASS DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:16,1:7,4 +chr8 121112767 . A G 0 PASS DP=86;GPV=1;SPV=1.8286e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:17,10:16,8 +chr8 123702459 . A G 0 PASS DP=102;GPV=1;SPV=1.0881e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:15,7:18,6 +chr8 125540475 . G A 0 PASS DP=81;GPV=1;SPV=0.00083722;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:18,5:16,6 +chr8 126196445 . A G 0 PASS DP=98;GPV=1;SPV=1.613e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:40,19:16,13:24,6 +chr8 127817460 . AAT A 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr8 129449402 . G C 0 PASS DP=22;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:6,2:0,0 +chr8 132409076 . T A 0 PASS DP=104;GPV=1;SPV=9.7521e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:41,18:20,14:21,4 +chr8 133578440 . AAGAAAAAG A 0 PASS DP=32;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr8 134113457 . T C 0 PASS DP=79;GPV=1;SPV=0.0034446;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:24,6:11,3 +chr8 134190431 . GGTTGT G 0 PASS DP=117;GPV=1;SPV=0.048023;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:50,13:32,11:18,2 +chr8 134214861 . C CT 0 PASS DP=32;GPV=1;SPV=0.024674;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,5:4,4 +chr8 135515365 . TAAAAAAAA T 0 PASS DP=39;GPV=1;SPV=0.035568;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:8,4:7,1 +chr8 135645992 . ATTT A 0 PASS DP=43;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,4:11,2:6,2 +chr8 135782500 . C A 0 PASS DP=103;GPV=1;SPV=6.0337e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:17,5:20,7 +chr8 137237914 . G T 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:16,3:14,1 +chr8 137433570 . G A 0 PASS DP=101;GPV=1;SPV=0.0011997;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:19,5:22,4 +chr8 137569743 . T A 0 PASS DP=91;GPV=1;SPV=0.00084558;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,12:22,8:19,4 +chr8 140033660 . T TTTTTG 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:6,1:15,4 +chr8 140902036 . T A 0 PASS DP=96;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:6,3:3,1:3,2 +chr8 141540940 . C CACAG 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,3:18,1 +chr8 142760623 . C A 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:4,2:1,1 +chr8 142887418 . G C 0 PASS DP=69;GPV=1;SPV=0.038264;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:17,6:7,1 +chr8 143908400 . C T 0 PASS DP=95;GPV=1;SPV=0.00031571;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:21,3:14,7 +chr8 144188449 . ATTTTT A 0 PASS DP=39;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:1,0:12,4 +chr9 400004 . C T 0 PASS DP=26;GPV=1;SPV=0.055901;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chr9 528469 . CT C 0 PASS DP=18;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,3:1,1 +chr9 932654 . C T 0 PASS DP=83;GPV=1;SPV=0.001805;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:18,6:20,5 +chr9 1551518 . C CT 0 PASS DP=102;GPV=1;SPV=1.467e-06;SS=2;SSC=58;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:17,5:14,10 +chr9 4465756 . A T 0 PASS DP=72;GPV=1;SPV=0.0096404;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:38,11:13,3:25,8 +chr9 4857407 . C T 0 PASS DP=82;GPV=1;SPV=0.0017262;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:14,5:17,3 +chr9 5919543 . A AACACACACACACACACACAC 0 PASS DP=34;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,6:8,4:2,2 +chr9 6179458 . T C 0 PASS DP=104;GPV=1;SPV=0.01818;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:53,7:35,5:18,2 +chr9 9034725 . G A 0 PASS DP=87;GPV=1;SPV=0.0016349;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:16,4:22,6 +chr9 9158600 . G A 0 PASS DP=90;GPV=1;SPV=0.0040567;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:26,4:13,4 +chr9 11399613 . A G 0 PASS DP=84;GPV=1;SPV=0.0040654;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:19,6:17,2 +chr9 12019965 . G A 0 PASS DP=117;GPV=1;SPV=5.0519e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:49,15:29,4:20,11 +chr9 12038241 . G T 0 PASS DP=78;GPV=1;SPV=7.9911e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:19,3:9,10 +chr9 12386854 . CATATAT C 0 PASS DP=26;GPV=1;SPV=0.25826;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:8,2:2,2 +chr9 14768275 . A T 0 PASS DP=79;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:42:1,4:0,0:1,4 +chr9 15345467 . C A 0 PASS DP=87;GPV=1;SPV=0.054832;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,5:13,2:12,3 +chr9 15363370 . CAT C 0 PASS DP=28;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:5,7:5,1 +chr9 15534643 . T A 0 PASS DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:21,3:10,9 +chr9 16367422 . A ATT 0 PASS DP=33;GPV=1;SPV=0.077778;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:6,2:5,2 +chr9 17608147 . C CTTT 0 PASS DP=39;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,8:2,4:5,4 +chr9 18283607 . T TAA 0 PASS DP=30;GPV=1;SPV=0.031059;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,6:5,4:3,2 +chr9 22361749 . G A 0 PASS DP=90;GPV=1;SPV=0.0022864;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:15,3:21,5 +chr9 22753409 . C CA 0 PASS DP=50;GPV=1;SPV=0.00071247;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:16,11:2,1 +chr9 22830913 . T C 0 PASS DP=77;GPV=1;SPV=0.10313;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,4:18,3:7,1 +chr9 22905412 . AT A 0 PASS DP=85;GPV=1;SPV=8.9917e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:21,11:12,3 +chr9 23159451 . C G 0 PASS DP=35;GPV=1;SPV=0.03602;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:5,2:6,4 +chr9 23228610 . G GA 0 PASS DP=74;GPV=1;SPV=0.017057;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,16:20,12:10,4 +chr9 23289832 . CAA C 0 PASS DP=60;GPV=1;SPV=0.115;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:24,4:10,1 +chr9 23627441 . GTATATATATATATA G 0 PASS DP=32;GPV=1;SPV=0.0045822;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:5,9:5,3 +chr9 24471382 . C T 0 PASS DP=94;GPV=1;SPV=4.6702e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:16,6:18,7 +chr9 24609154 . A AT 0 PASS DP=60;GPV=1;SPV=0.0048907;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:11,9:17,2 +chr9 25012710 . A T 0 PASS DP=91;GPV=1;SPV=5.8151e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:18,6:18,9 +chr9 25460823 . C CAAAAAAAAA 0 PASS DP=83;GPV=1;SPV=0.035008;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,10:21,9:12,1 +chr9 25552600 . T A 0 PASS DP=83;GPV=1;SPV=0.00018501;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,10:17,5 +chr9 26003300 . G A 0 PASS DP=96;GPV=1;SPV=7.3924e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:22,7:16,7 +chr9 26121984 . C A 0 PASS DP=106;GPV=1;SPV=1.5702e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:41,16:19,9:22,7 +chr9 27875868 . AAC A 0 PASS DP=58;GPV=1;SPV=0.0049255;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:13,5:12,4 +chr9 27880014 . G A 0 PASS DP=134;GPV=1;SPV=7.2274e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:30,8:22,8 +chr9 28848160 . ATATAGT A 0 PASS DP=26;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:8,2:4,1 +chr9 29024836 . G A 0 PASS DP=94;GPV=1;SPV=1.9604e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:18,6:15,8 +chr9 29085281 . T TA 0 PASS DP=35;GPV=1;SPV=0.33771;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:14,3:6,1 +chr9 32165011 . G A 0 PASS DP=82;GPV=1;SPV=0.00041078;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:17,7:15,4 +chr9 32601670 . T A 0 PASS DP=101;GPV=1;SPV=0.0001031;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:18,4:22,9 +chr9 34416213 . A T 0 PASS DP=34;GPV=1;SPV=0.029588;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,10:8,9:4,1 +chr9 35333964 . G T 0 PASS DP=88;GPV=1;SPV=0.036676;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:17,4:12,2:5,2 +chr9 36156385 . TAA T 0 PASS DP=39;GPV=1;SPV=0.044451;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,8:4,3 +chr9 36792753 . CCA C 0 PASS DP=74;GPV=1;SPV=0.028317;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:24,5:12,1 +chr9 38460772 . CTTTTT C 0 PASS DP=34;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr9 38989371 . G A 0 PASS DP=64;GPV=1;SPV=0.051196;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:18,3:16,3 +chr9 39054976 . C T 0 PASS DP=110;GPV=1;SPV=0.042295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:60,10:32,7:28,3 +chr9 39584585 . A AAAAAAAG 0 PASS DP=146;GPV=1;SPV=0.02264;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:68,8:36,4:32,4 +chr9 39796987 . T A 0 PASS DP=52;GPV=1;SPV=0.054403;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:11,1:16,5 +chr9 40040894 . G A 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,4:5,2 +chr9 40068507 . C T 0 PASS DP=84;GPV=1;SPV=0.039226;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:24,5:13,2 +chr9 40200174 . GTTTT G 0 PASS DP=112;GPV=1;SPV=0.018088;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:44,16:24,10:20,6 +chr9 40516774 . T C 0 PASS DP=43;GPV=1;SPV=0.039259;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,3:9,1 +chr9 40731686 . A AT 0 PASS DP=81;GPV=1;SPV=0.025396;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,6:15,1:23,5 +chr9 40804756 . C CCTTT 0 PASS DP=57;GPV=1;SPV=0.015839;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,11:8,3:14,8 +chr9 40851579 . A G 0 PASS DP=107;GPV=1;SPV=0.012703;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:18,3:29,3 +chr9 40960658 . A T 0 PASS DP=240;GPV=1;SPV=0.037876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:115,25:58,18:57,7 +chr9 40973717 . G A 0 PASS DP=316;GPV=1;SPV=0.029368;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:173:155,18:76,13:79,5 +chr9 40979805 . TAA T 0 PASS DP=386;GPV=1;SPV=0.047842;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:202,25:114,13:88,12 +chr9 40995624 . G C 0 PASS DP=151;GPV=1;SPV=0.0046679;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:76,9:57,8:19,1 +chr9 41075176 . TGTGTAC T 0 PASS DP=94;GPV=1;SPV=0.029296;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,13:13,3:24,10 +chr9 41112893 . A T 0 PASS DP=64;GPV=1;SPV=0.036359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:10,8:15,1 +chr9 41203255 . G A 0 PASS DP=168;GPV=1;SPV=0.042316;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:70,9:29,3:41,6 +chr9 41204487 . G A 0 PASS DP=36;GPV=1;SPV=0.030844;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,3:8,2 +chr9 41221222 . G A 0 PASS DP=393;GPV=1;SPV=0.010139;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:203:172,31:104,19:68,12 +chr9 41253107 . G C 0 PASS DP=217;GPV=1;SPV=0.0010047;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:99,16:47,7:52,9 +chr9 41275062 . C T 0 PASS DP=80;GPV=1;SPV=0.0041548;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:7,7:24,7 +chr9 41275865 . C T 0 PASS DP=324;GPV=1;SPV=0.008596;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:144,22:59,6:85,16 +chr9 41326243 . A C 0 PASS DP=76;GPV=1;SPV=0.018267;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:17,3:13,11 +chr9 41338692 . C T 0 PASS DP=86;GPV=1;SPV=0.0096193;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:20,10:12,3 +chr9 41460901 . G T 0 PASS DP=89;GPV=1;SPV=0.041853;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:15,1:25,6 +chr9 41460991 . A G 0 PASS DP=67;GPV=1;SPV=0.0016204;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:4,2:20,10 +chr9 41482510 . T A 0 PASS DP=105;GPV=1;SPV=0.033965;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:53,9:20,3:33,6 +chr9 41501442 . T C 0 PASS DP=68;GPV=1;SPV=0.026137;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,6:16,4 +chr9 41717094 . A AT 0 PASS DP=141;GPV=1;SPV=0.022536;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,13:37,5:21,8 +chr9 41920840 . G A 0 PASS DP=209;GPV=1;SPV=0.0053225;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:97,28:60,18:37,10 +chr9 41932622 . C T 0 PASS DP=197;GPV=1;SPV=0.0060414;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:79,25:41,9:38,16 +chr9 42187574 . C T 0 PASS DP=85;GPV=1;SPV=0.026125;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:18,2:9,6 +chr9 42189883 . T C 0 PASS DP=120;GPV=1;SPV=0.021814;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:59,17:33,9:26,8 +chr9 43005960 . A T 0 PASS DP=170;GPV=1;SPV=0.02464;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:50,5:26,11 +chr9 43034421 . G A 0 PASS DP=142;GPV=1;SPV=0.04063;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:72,8:33,2:39,6 +chr9 43040612 . T C 0 PASS DP=118;GPV=1;SPV=0.017696;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:44,14:29,11:15,3 +chr9 43319585 . C T 0 PASS DP=93;GPV=1;SPV=0.0013404;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:27,5:17,7 +chr9 43435546 . T G 0 PASS DP=157;GPV=1;SPV=0.03335;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:70,13:62,11:8,2 +chr9 43497226 . T G 0 PASS DP=139;GPV=1;SPV=0.019473;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:42,3:21,5 +chr9 43555952 . C T 0 PASS DP=265;GPV=1;SPV=0.046991;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:145:122,23:93,19:29,4 +chr9 43657784 . A G 0 PASS DP=40;GPV=1;SPV=0.099968;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,1:6,4 +chr9 43737971 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr9 44129620 . G A 0 PASS DP=387;GPV=1;SPV=0.028788;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:191,26:132,23:59,3 +chr9 44310318 . A C 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr9 44414745 . T C 0 PASS DP=199;GPV=1;SPV=0.019624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:90,14:23,3:67,11 +chr9 44843023 . A G 0 PASS DP=132;GPV=1;SPV=0.016542;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:62,19:56,2:6,17 +chr9 44895497 . G C 0 PASS DP=467;GPV=1;SPV=0.010463;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:255:219,36:140,29:79,7 +chr9 44934534 . T A 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,2:11,2 +chr9 45123799 . G C 0 PASS DP=455;GPV=1;SPV=0.006184;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:215,24:123,12:92,12 +chr9 45374360 . C T 0 PASS DP=66;GPV=1;SPV=0.064347;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:29,4:1,0 +chr9 45419343 . A G 0 PASS DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:2,8:12,1 +chr9 60610139 . G T 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:1,0:22,4 +chr9 61161872 . T G 0 PASS DP=43;GPV=1;SPV=0.0091926;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:6,9:9,2 +chr9 61915782 . G T 0 PASS DP=90;GPV=1;SPV=0.017906;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:45,7:19,1:26,6 +chr9 62099604 . C T 0 PASS DP=19;GPV=1;SPV=0.0011775;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:1,10:0,2:1,8 +chr9 62800114 . C T 0 PASS DP=487;GPV=1;SPV=0.031305;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:240,39:124,15:116,24 +chr9 62802278 . C T 0 PASS DP=480;GPV=1;SPV=0.043145;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:215,39:100,14:115,25 +chr9 62811764 . T C 0 PASS DP=310;GPV=1;SPV=0.025293;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:139,25:62,13:77,12 +chr9 62826395 . G C 0 PASS DP=253;GPV=1;SPV=0.02156;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:127,16:69,2:58,14 +chr9 62835638 . G C 0 PASS DP=296;GPV=1;SPV=0.01712;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:169:150,19:79,6:71,13 +chr9 62840770 . G C 0 PASS DP=341;GPV=1;SPV=0.0035057;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:164,26:39,6:125,20 +chr9 62841157 . A T 0 PASS DP=258;GPV=1;SPV=0.033344;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:110,21:55,5:55,16 +chr9 62885216 . C T 0 PASS DP=94;GPV=1;SPV=0.0432;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:14,3:26,8 +chr9 62904052 . G A 0 PASS DP=83;GPV=1;SPV=0.023646;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:19,8:9,1 +chr9 62905632 . TC T 0 PASS DP=68;GPV=1;SPV=0.064294;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:31,4:0,0 +chr9 63345898 . T G 0 PASS DP=115;GPV=1;SPV=0.01398;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:43,15:16,7:27,8 +chr9 63757194 . C T 0 PASS DP=106;GPV=1;SPV=0.00082552;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:51,13:32,9:19,4 +chr9 63812339 . C T 0 PASS DP=117;GPV=1;SPV=0.032541;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:51,9:28,4:23,5 +chr9 63819760 . G T 0 PASS DP=567;GPV=1;SPV=0.014374;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:261,39:120,23:141,16 +chr9 63861709 . C A 0 PASS DP=263;GPV=1;SPV=0.015469;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:112,28:35,7:77,21 +chr9 63861710 . A G 0 PASS DP=260;GPV=1;SPV=0.023576;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:112,27:39,7:73,20 +chr9 63870056 . A G 0 PASS DP=131;GPV=1;SPV=0.020167;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:33,7:18,5 +chr9 63870158 . G A 0 PASS DP=129;GPV=1;SPV=0.021202;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:31,3:26,7 +chr9 63870195 . CT C 0 PASS DP=118;GPV=1;SPV=0.014363;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,6:29,1:22,5 +chr9 64077123 . C CA 0 PASS DP=55;GPV=1;SPV=0.03931;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,12:16,10:3,2 +chr9 64107800 . C A 0 PASS DP=400;GPV=1;SPV=0.046046;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:209:182,27:90,18:92,9 +chr9 64375598 . A G 0 PASS DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,4:11,9 +chr9 64386168 . C T 0 PASS DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:17,4:3,1 +chr9 64469826 . C CTTTT 0 PASS DP=35;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,4:4,1:3,3 +chr9 64492136 . C A 0 PASS DP=75;GPV=1;SPV=0.041089;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:10,7:17,2 +chr9 64493849 . T C 0 PASS DP=91;GPV=1;SPV=0.041004;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:36,2:8,3 +chr9 64682117 . G T 0 PASS DP=17;GPV=1;SPV=0.036405;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:0,5:3,1 +chr9 65256879 . C T 0 PASS DP=46;GPV=1;SPV=0.015873;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:0,1:16,7 +chr9 65269468 . T C 0 PASS DP=31;GPV=1;SPV=0.3426;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:16,2:3,1 +chr9 65287393 . T A 0 PASS DP=27;GPV=1;SPV=0.0019324;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:2,4:4,3 +chr9 65653714 . T G 0 PASS DP=247;GPV=1;SPV=0.017356;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:109,19:62,13:47,6 +chr9 65936253 . A C 0 PASS DP=152;GPV=1;SPV=0.049277;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:65,13:30,7:35,6 +chr9 65967821 . G T 0 PASS DP=118;GPV=1;SPV=0.03329;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:23,5:30,7 +chr9 66031944 . T C 0 PASS DP=169;GPV=1;SPV=0.0014401;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:71,23:40,12:31,11 +chr9 66042285 . T C 0 PASS DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:3,3:7,2 +chr9 66171597 . T C 0 PASS DP=186;GPV=1;SPV=0.049508;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:75,16:38,9:37,7 +chr9 66171811 . T A 0 PASS DP=135;GPV=1;SPV=0.018795;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:52,16:26,9:26,7 +chr9 66176323 . A G 0 PASS DP=35;GPV=1;SPV=0.027751;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:7,1:2,4 +chr9 66220831 . C T 0 PASS DP=172;GPV=1;SPV=0.031662;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:79,16:42,9:37,7 +chr9 66354771 . AAAGG A 0 PASS DP=38;GPV=1;SPV=0.26573;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:1,0:22,4 +chr9 66356240 . G GT 0 PASS DP=46;GPV=1;SPV=0.016558;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:11,1:6,5 +chr9 66738566 . G T 0 PASS DP=94;GPV=1;SPV=0.024045;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:21,8:19,2 +chr9 66886167 . A ATT 0 PASS DP=55;GPV=1;SPV=0.038251;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:12,4:9,7 +chr9 67126309 . A C 0 PASS DP=132;GPV=1;SPV=0.00032488;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:61,13:34,8:27,5 +chr9 67505891 . A T 0 PASS DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:5,8:3,1 +chr9 67616303 . C T 0 PASS DP=59;GPV=1;SPV=0.023721;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:6,2:18,3 +chr9 67749642 . G T 0 PASS DP=25;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr9 67778907 . C T 0 PASS DP=66;GPV=1;SPV=0.028868;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:6,3:28,4 +chr9 67810124 . A T 0 PASS DP=171;GPV=1;SPV=0.020503;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:73,9:35,7:38,2 +chr9 67897767 . G GT 0 PASS DP=70;GPV=1;SPV=0.064244;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:15,1:17,3 +chr9 68235379 . G A 0 PASS DP=96;GPV=1;SPV=0.047588;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,10:16,6:19,4 +chr9 68257015 . GGTTTTTT G 0 PASS DP=19;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:2,1:2,1 +chr9 68263305 . G T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr9 68293018 . C G 0 PASS DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:34,4:1,0 +chr9 68302441 . C A 0 PASS DP=37;GPV=1;SPV=0.02545;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2 +chr9 68331415 . C T 0 PASS DP=110;GPV=1;SPV=0.027329;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:60,7:28,5:32,2 +chr9 68331508 . A G 0 PASS DP=126;GPV=1;SPV=0.03356;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:65,9:21,2:44,7 +chr9 68356290 . C T 0 PASS DP=99;GPV=1;SPV=0.044109;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:26,7:18,2 +chr9 70505606 . C T 0 PASS DP=71;GPV=1;SPV=0.011214;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:18,1:19,9 +chr9 70505607 . CT C 0 PASS DP=65;GPV=1;SPV=0.11654;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:15,1:23,4 +chr9 71928186 . CAAAAAAAA C 0 PASS DP=43;GPV=1;SPV=0.026533;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:6,15:3,13:3,2 +chr9 74549551 . A G 0 PASS DP=24;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,3:5,3:0,0 +chr9 74847168 . T G 0 PASS DP=100;GPV=1;SPV=0.00019647;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:40,12:21,6:19,6 +chr9 76351610 . GA G 0 PASS DP=57;GPV=1;SPV=0.028362;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:18,2:6,3 +chr9 77431748 . G A 0 PASS DP=113;GPV=1;SPV=3.6348e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:44,19:21,10:23,9 +chr9 77951092 . C CTT 0 PASS DP=45;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,5:6,4:6,1 +chr9 79516885 . C CA 0 PASS DP=74;GPV=1;SPV=0.064152;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,2:15,2 +chr9 79516891 . G A 0 PASS DP=83;GPV=1;SPV=0.024282;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:15,6:9,3:6,3 +chr9 79845036 . C A 0 PASS DP=95;GPV=1;SPV=0.00017085;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:17,5:18,6 +chr9 80682810 . G GTGTGTACATA 0 PASS DP=86;GPV=1;SPV=0.0012204;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,17:15,7:10,10 +chr9 80758140 . CACAT C 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr9 81017974 . C T 0 PASS DP=74;GPV=1;SPV=0.00035994;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:15,5:14,7 +chr9 81082749 . TTC T 0 PASS DP=44;GPV=1;SPV=0.020884;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:6,1:10,8 +chr9 82276208 . A G 0 PASS DP=74;GPV=1;SPV=0.013935;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:15,6:15,6 +chr9 83158653 . T C 0 PASS DP=59;GPV=1;SPV=0.10931;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,4:17,2:13,2 +chr9 83378261 . G GT 0 PASS DP=56;GPV=1;SPV=0.014733;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,15:4,11:12,4 +chr9 84773759 . A C 0 PASS DP=92;GPV=1;SPV=0.00042036;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:21,4:16,7 +chr9 84797611 . A T 0 PASS DP=20;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:0,0:6,2 +chr9 84924229 . TAGAAAGAA T 0 PASS DP=67;GPV=1;SPV=0.0010569;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:13,10:9,6 +chr9 85219269 . T A 0 PASS DP=95;GPV=1;SPV=0.0052387;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:43,8:18,3:25,5 +chr9 85259866 . T C 0 PASS DP=40;GPV=1;SPV=0.021798;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:6,1:7,6 +chr9 87183343 . G T 0 PASS DP=108;GPV=1;SPV=0.00025363;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:20,6:25,6 +chr9 88136022 . C G 0 PASS DP=119;GPV=1;SPV=0.020238;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:58,17:31,7:27,10 +chr9 88178055 . C A 0 PASS DP=70;GPV=1;SPV=0.039403;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,10:6,2:17,8 +chr9 88423726 . AT A 0 PASS DP=63;GPV=1;SPV=0.0034815;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,14:17,10:12,4 +chr9 90352561 . A T 0 PASS DP=103;GPV=1;SPV=1.2761e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:33,21:18,12:15,9 +chr9 91372933 . T TTTG 0 PASS DP=38;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:3,1:9,3 +chr9 92156756 . A G 0 PASS DP=87;GPV=1;SPV=0.03611;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:16,2:14,8 +chr9 96165262 . G A 0 PASS DP=93;GPV=1;SPV=0.014087;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:23,3:18,3 +chr9 96456759 . CAAAAA C 0 PASS DP=24;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1 +chr9 97946938 . G A 0 PASS DP=101;GPV=1;SPV=2.6269e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:43,19:20,13:23,6 +chr9 98246667 . TC T 0 PASS DP=104;GPV=1;SPV=0.00032303;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:44,12:19,9:25,3 +chr9 98729589 . C T 0 PASS DP=96;GPV=1;SPV=0.0056752;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:44,8:19,5:25,3 +chr9 100973502 . A C 0 PASS DP=30;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:14:0,2:0,0:0,2 +chr9 102747129 . A T 0 PASS DP=88;GPV=1;SPV=7.4988e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:21,9:13,5 +chr9 102910576 . A T 0 PASS DP=82;GPV=1;SPV=0.0001091;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:14,8:18,6 +chr9 103157090 . AT A 0 PASS DP=88;GPV=1;SPV=1.6127e-05;SS=2;SSC=47;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:14,7:17,8 +chr9 103157095 . A T 0 PASS DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:13,6:17,8 +chr9 103168002 . G A 0 PASS DP=98;GPV=1;SPV=0.007985;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:50,9:22,7:28,2 +chr9 103739609 . C T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:2,1:11,3 +chr9 109332155 . T A 0 PASS DP=68;GPV=1;SPV=0.033265;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,6:8,3:5,3 +chr9 109510558 . TAAAA T 0 PASS DP=57;GPV=1;SPV=0.059209;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,5:11,1:15,4 +chr9 110245653 . TA T 0 PASS DP=26;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:1,3:1,1:0,2 +chr9 111153004 . A G 0 PASS DP=39;GPV=1;SPV=0.0022504;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,13:10,10:2,3 +chr9 111985797 . G T 0 PASS DP=94;GPV=1;SPV=0.00032727;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:21,8:16,3 +chr9 112161821 . A C 0 PASS DP=62;GPV=1;SPV=0.13866;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:7,4:5,1:2,3 +chr9 112290707 . T TACACACACAA 0 PASS DP=50;GPV=1;SPV=0.011333;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,11:5,4:11,7 +chr9 112477701 . T C 0 PASS DP=78;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:22,5:17,6 +chr9 112775542 . T TTGTGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,3:5,2 +chr9 113248462 . C CT 0 PASS DP=30;GPV=1;SPV=0.032107;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,4:3,1 +chr9 114496542 . A C 0 PASS DP=83;GPV=1;SPV=0.020919;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,6:8,5:14,1 +chr9 114949683 . C CTT 0 PASS DP=51;GPV=1;SPV=0.080194;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,5:5,2:21,3 +chr9 114949709 . C T 0 PASS DP=40;GPV=1;SPV=0.020314;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:1,3:17,5 +chr9 115298062 . CAAA C 0 PASS DP=47;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,5:12,1:9,4 +chr9 116141871 . T TGGAAGGAA 0 PASS DP=37;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:7,4:7,1 +chr9 119043947 . A T 0 PASS DP=80;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,4:13,1:13,3 +chr9 121002240 . ATATGTATATATATG A 0 PASS DP=49;GPV=1;SPV=0.012978;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:12,3:10,5 +chr9 122391368 . T TAC 0 PASS DP=31;GPV=1;SPV=0.20399;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:9,2:7,2 +chr9 123848228 . TAA T 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:13,3:5,1 +chr9 123946971 . AT A 0 PASS DP=27;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,1:7,3 +chr9 125126591 . A T 0 PASS DP=54;GPV=1;SPV=0.025527;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:16,4:6,1 +chr9 125368651 . TTA T 0 PASS DP=40;GPV=1;SPV=0.024893;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:7,5:7,5 +chr9 126043190 . C T 0 PASS DP=82;GPV=1;SPV=0.00025457;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:17,5:15,7 +chr9 126720734 . T TA 0 PASS DP=75;GPV=1;SPV=0.013592;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:18,2:17,5 +chr9 128830632 . CTTTTTTTTTTTTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.0036482;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,9:5,2:1,7 +chr9 129493970 . G A 0 PASS DP=53;GPV=1;SPV=0.0091766;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:14,4:3,1 +chr9 130334549 . G GTT 0 PASS DP=57;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:10,11:6,9:4,2 +chr9 130955308 . G T 0 PASS DP=21;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:0,5:3,1 +chr9 131462836 . T TAAAA 0 PASS DP=30;GPV=1;SPV=0.040316;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:4,2:1,2 +chr9 132313931 . T G 0 PASS DP=101;GPV=1;SPV=0.11505;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:31,4:22,2:9,2 +chr9 132708087 . AAGAAAG A 0 PASS DP=60;GPV=1;SPV=0.027472;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,9:10,3:10,6 +chr9 132964743 . CT C 0 PASS DP=47;GPV=1;SPV=0.0036125;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,6:4,2:3,4 +chr9 134679626 . C T 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr9 135125996 . GT G 0 PASS DP=92;GPV=1;SPV=0.043084;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:16,1:29,4 +chr9 136452449 . CAAAAA C 0 PASS DP=41;GPV=1;SPV=0.027664;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:11,9:5,1 +chr9 136802875 . T C 0 PASS DP=61;GPV=1;SPV=0.10745;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,4:4,3:23,1 +chr9 137323590 . T C 0 PASS DP=72;GPV=1;SPV=0.022631;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:27,12:24,10:3,2 +chr9 137379006 . A G 0 PASS DP=28;GPV=1;SPV=0.23663;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,1:12,3 +chr9 138218119 . T C 0 PASS DP=99;GPV=1;SPV=0.046765;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:58,7:35,6:23,1 +chrM 4201 . G A 0 PASS DP=14053;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7031:5235,1795:2022,765:3213,1030 +chrX 3092212 . G C 0 PASS DP=57;GPV=1;SPV=0.029045;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:8,4:14,3 +chrX 3309177 . A AAT 0 PASS DP=52;GPV=1;SPV=0.00068379;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:10,8:9,4 +chrX 3659728 . TG T 0 PASS DP=33;GPV=1;SPV=0.10909;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:2,2:0,1:2,1 +chrX 4121774 . T TCTC 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chrX 7992178 . T TTCTC 0 PASS DP=20;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:0,4:3,1 +chrX 9313051 . A G 0 PASS DP=18;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,4:0,4:0,0 +chrX 9411434 . G C 0 PASS DP=65;GPV=1;SPV=0.068498;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:12,3:18,1 +chrX 13675572 . A G 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2 +chrX 14545758 . C T 0 PASS DP=51;GPV=1;SPV=1.7034e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:6,7:6,5 +chrX 18214152 . G A 0 PASS DP=49;GPV=1;SPV=4.9037e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,15:7,7:4,8 +chrX 21331652 . C T 0 PASS DP=42;GPV=1;SPV=0.00017618;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,15:6,8:6,7 +chrX 22690043 . A T 0 PASS DP=50;GPV=1;SPV=2.9309e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:5,7:8,6 +chrX 26425516 . A T 0 PASS DP=43;GPV=1;SPV=0.00012264;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:6,3:5,8 +chrX 27042819 . TA T 0 PASS DP=42;GPV=1;SPV=9.7816e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:6,6:5,7 +chrX 27096437 . A T 0 PASS DP=39;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:19:0,2:0,0:0,2 +chrX 28945905 . G A 0 PASS DP=43;GPV=1;SPV=0.068336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,2:10,3 +chrX 33412878 . G A 0 PASS DP=57;GPV=1;SPV=0.037062;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,4:14,2 +chrX 34032854 . G A 0 PASS DP=39;GPV=1;SPV=0.00010021;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,11:4,7:5,4 +chrX 38518516 . C CT 0 PASS DP=38;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,5:7,1 +chrX 44125010 . CA C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chrX 44616563 . G T 0 PASS DP=37;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:3,2:3,2:0,0 +chrX 45302124 . G T 0 PASS DP=36;GPV=1;SPV=0.19342;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:14,3:8,3 +chrX 46037998 . GATATATAT G 0 PASS DP=29;GPV=1;SPV=0.012836;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,12:4,3:3,9 +chrX 46917834 . C CCTCT 0 PASS DP=17;GPV=1;SPV=0.024476;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,5:2,3:0,2 +chrX 48779797 . T C 0 PASS DP=52;GPV=1;SPV=4.5999e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,17:6,8:0,9 +chrX 51692739 . A ACGCG 0 PASS DP=27;GPV=1;SPV=0.044851;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:7,3:1,5 +chrX 53078022 . C G 0 PASS DP=52;GPV=1;SPV=0.031857;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:1,4:1,3:0,1 +chrX 53463626 . T TTCTTCTTTCTA 0 PASS DP=47;GPV=1;SPV=0.078276;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:8,1:12,3 +chrX 55940070 . C CA 0 PASS DP=39;GPV=1;SPV=0.0033075;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,6:5,2 +chrX 59031791 . C T 0 PASS DP=30;GPV=1;SPV=0.0050575;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,5:2,1 +chrX 61711362 . G C 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chrX 72049295 . G A 0 PASS DP=53;GPV=1;SPV=4.8084e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:6,7:10,8 +chrX 79631705 . G A 0 PASS DP=45;GPV=1;SPV=0.0010246;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:6,5:9,5 +chrX 80453521 . CA C 0 PASS DP=34;GPV=1;SPV=0.00053602;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:7,7:2,5 +chrX 82060681 . C CTCT 0 PASS DP=40;GPV=1;SPV=0.13462;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:6,2:12,1 +chrX 82593914 . G T 0 PASS DP=52;GPV=1;SPV=0.095675;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:18,2:12,4 +chrX 83754213 . G A 0 PASS DP=68;GPV=1;SPV=0.063124;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:19,2:16,3 +chrX 87257915 . A G 0 PASS DP=45;GPV=1;SPV=0.003412;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,3:9,5 +chrX 87796085 . T C 0 PASS DP=49;GPV=1;SPV=0.00013922;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,5:5,5 +chrX 88491057 . G T 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,1:7,5 +chrX 88811126 . C T 0 PASS DP=53;GPV=1;SPV=2.0919e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,15:3,9:6,6 +chrX 90203941 . C CTCTTTCTT 0 PASS DP=30;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,6:2,2:4,4 +chrX 91286984 . C A 0 PASS DP=52;GPV=1;SPV=7.3793e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:8,3:6,8 +chrX 91807176 . CA C 0 PASS DP=34;GPV=1;SPV=0.07313;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:13,4:3,1 +chrX 91893509 . C T 0 PASS DP=49;GPV=1;SPV=8.5672e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,5:6,6 +chrX 93083071 . ATTTTAT A 0 PASS DP=45;GPV=1;SPV=0.051203;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:13,1:7,5 +chrX 93083081 . G A 0 PASS DP=54;GPV=1;SPV=0.02299;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:14,1:10,5 +chrX 97016615 . A T 0 PASS DP=47;GPV=1;SPV=1.3047e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:3,6:8,8 +chrX 100214822 . A G 0 PASS DP=44;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:1,2:0,1:1,1 +chrX 100501914 . A G 0 PASS DP=26;GPV=1;SPV=0.26154;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:10,1:4,2 +chrX 107347815 . A AT 0 PASS DP=32;GPV=1;SPV=0.0071858;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4 +chrX 107623602 . C T 0 PASS DP=33;GPV=1;SPV=0.035315;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:4,3:11,5 +chrX 110091519 . T C 0 PASS DP=40;GPV=1;SPV=3.3228e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:6,12:3,7:3,5 +chrX 110912416 . A G 0 PASS DP=20;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,2:5,1:1,1 +chrX 111269239 . C T 0 PASS DP=44;GPV=1;SPV=0.001265;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,14:9,5:7,9 +chrX 111766846 . C T 0 PASS DP=36;GPV=1;SPV=0.0014461;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,5:2,3 +chrX 116312761 . A G 0 PASS DP=44;GPV=1;SPV=0.15083;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:12,3:12,1 +chrX 117350431 . T A 0 PASS DP=39;GPV=1;SPV=0.022869;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,2:9,4 +chrX 117350432 . A T 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:6,2:9,3 +chrX 118009278 . G T 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:9,3:10,1 +chrX 123694621 . A G 0 PASS DP=43;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,2:0,1:0,1 +chrX 123916752 . AAGTT A 0 PASS DP=27;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,2:3,3 +chrX 124536737 . G A 0 PASS DP=48;GPV=1;SPV=8.1543e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,17:4,8:3,9 +chrX 126872642 . T G 0 PASS DP=39;GPV=1;SPV=0.0023473;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:3,4:10,5 +chrX 126945081 . A C 0 PASS DP=31;GPV=1;SPV=0.1839;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,5:3,2:9,3 +chrX 126945083 . C T 0 PASS DP=31;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,4:2,2:8,2 +chrX 127531176 . TGTA T 0 PASS DP=31;GPV=1;SPV=0.0041657;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,3:6,8 +chrX 127921041 . A T 0 PASS DP=43;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:1,4:1,1:0,3 +chrX 128936893 . GTA G 0 PASS DP=29;GPV=1;SPV=0.12821;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,2:3,1:0,1 +chrX 129599558 . C G 0 PASS DP=42;GPV=1;SPV=1.5459e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,14:2,5:7,9 +chrX 130732698 . T TCA 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:8,2:9,2 +chrX 139415082 . A T 0 PASS DP=47;GPV=1;SPV=5.8711e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:4,5:9,9 +chrX 147897926 . T A 0 PASS DP=33;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:10,1:7,3 +chrX 152244389 . G A 0 PASS DP=50;GPV=1;SPV=8.2699e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,6:8,8 +chrX 153679546 . T TTTTTC 0 PASS DP=23;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:2,2:9,2 +chrX 154888408 . C T 0 PASS DP=37;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,4:8,2:8,2 +chrX 155051710 . G A 0 PASS DP=46;GPV=1;SPV=0.0042541;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,5:7,4 +chrY 3056481 . A T 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2 +chrY 3309359 . C A 0 PASS DP=60;GPV=1;SPV=0.091905;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,1:16,4 +chrY 3773083 . T C 0 PASS DP=17;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,2:0,1:6,1 +chrY 3795271 . C T 0 PASS DP=62;GPV=1;SPV=0.073354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chrY 3809249 . C G 0 PASS DP=54;GPV=1;SPV=4.3264e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,15:9,10:4,5 +chrY 4571151 . C T 0 PASS DP=67;GPV=1;SPV=5.6034e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,20:9,10:6,10 +chrY 4616746 . C T 0 PASS DP=53;GPV=1;SPV=0.070174;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:14,2:13,3 +chrY 4631875 . T C 0 PASS DP=48;GPV=1;SPV=0.073845;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:14,1:12,5 +chrY 5682239 . GTTTTT G 0 PASS DP=18;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:4,1:1,1 +chrY 6718333 . A G 0 PASS DP=55;GPV=1;SPV=0.023207;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,1:12,4 +chrY 8465534 . C T 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chrY 9196507 . G A 0 PASS DP=38;GPV=1;SPV=0.0004971;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:5,4:4,4 +chrY 9462573 . G C 0 PASS DP=305;GPV=1;SPV=0.040288;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:133,17:52,5:81,12 +chrY 9469163 . G A 0 PASS DP=25;GPV=1;SPV=0.10791;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:1,0:10,4 +chrY 10065090 . C T 0 PASS DP=49;GPV=1;SPV=5.941e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:4,6:10,8 +chrY 10669371 . T C 0 PASS DP=50;GPV=1;SPV=0.23636;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,3:8,2:3,1 +chrY 11123549 . CT C 0 PASS DP=258;GPV=1;SPV=0.0092257;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:96,25:54,13:42,12 +chrY 11161812 . T A 0 PASS DP=158;GPV=1;SPV=0.028338;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:41,9:32,3 +chrY 11193193 . C A 0 PASS DP=183;GPV=1;SPV=0.045127;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:77,14:35,5:42,9 +chrY 11222315 . T C 0 PASS DP=618;GPV=1;SPV=0.012111;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:324:285,39:156,20:129,19 +chrY 11240134 . T C 0 PASS DP=820;GPV=1;SPV=0.018731;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:432:380,52:202,25:178,27 +chrY 11250509 . C T 0 PASS DP=122;GPV=1;SPV=0.0094467;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:51,11:26,4:25,7 +chrY 11259114 . T A 0 PASS DP=110;GPV=1;SPV=0.04336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,9:28,7:19,2 +chrY 11266802 . G C 0 PASS DP=205;GPV=1;SPV=0.011379;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:92,20:52,12:40,8 +chrY 11280375 . T C 0 PASS DP=499;GPV=1;SPV=0.017248;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:274:244,30:105,11:139,19 +chrY 11299445 . T TTTCCA 0 PASS DP=51;GPV=1;SPV=0.020935;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,9:11,4:14,5 +chrY 11548439 . T TATGGAATGGAATGGA 0 PASS DP=108;GPV=1;SPV=0.014981;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,6:22,5:14,1 +chrY 12093051 . G A 0 PASS DP=27;GPV=1;SPV=0.068111;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:3,3:4,1 +chrY 13654970 . A G 0 PASS DP=38;GPV=1;SPV=0.00026317;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,5:3,3 +chrY 15682277 . CT C 0 PASS DP=30;GPV=1;SPV=0.086845;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3 +chrY 20082265 . A T 0 PASS DP=66;GPV=1;SPV=0.033133;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:16,2:11,5 +chrY 20087972 . A G 0 PASS DP=47;GPV=1;SPV=0.048406;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,7:6,1 +chrY 22241393 . C T 0 PASS DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,8:5,7:5,1 +chrY 22241422 . T C 0 PASS DP=31;GPV=1;SPV=0.080632;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:10,4:2,4 +chrY 26671555 . T A 0 PASS DP=1600;GPV=1;SPV=0.041367;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:888:797,89:312,39:485,50 +chrY 56728619 . A G 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:0,0:22,4 +chrY 56752448 . G A 0 PASS DP=61;GPV=1;SPV=0.083915;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,4:0,0:29,4 +chrY 56828396 . T G 0 PASS DP=232;GPV=1;SPV=0.00081136;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:121:105,16:55,12:50,4 +chrY 56834375 . CTCTAT C 0 PASS DP=380;GPV=1;SPV=0.01997;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:173,28:94,15:79,13 +chrY 56854458 . C G 0 PASS DP=422;GPV=1;SPV=0.046799;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:218:185,33:108,18:77,15 +chrY 56871363 . G T 0 PASS DP=934;GPV=1;SPV=0.037494;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:499:435,64:207,37:228,27 +chrY 56878387 . A G 0 PASS DP=839;GPV=1;SPV=0.048414;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:458:408,50:204,23:204,27 +chrY 56879897 . T C 0 PASS DP=317;GPV=1;SPV=0.028389;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:129,25:77,14:52,11 +chrY 56883281 . G A 0 PASS DP=251;GPV=1;SPV=0.035565;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:124,14:55,8:69,6
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/EGF167.vcf Sun Sep 13 18:40:29 2020 +0000 @@ -0,0 +1,4432 @@ +##fileformat=VCFv4.2 +##FILTER=<ID=PASS,Description="All filters passed"> +##reference=hg38 +##source=varscan.py +##contig=<ID=chr1,length=248956422> +##contig=<ID=chr10,length=133797422> +##contig=<ID=chr11,length=135086622> +##contig=<ID=chr12,length=133275309> +##contig=<ID=chr13,length=114364328> +##contig=<ID=chr14,length=107043718> +##contig=<ID=chr15,length=101991189> +##contig=<ID=chr16,length=90338345> +##contig=<ID=chr17,length=83257441> +##contig=<ID=chr18,length=80373285> +##contig=<ID=chr19,length=58617616> +##contig=<ID=chr2,length=242193529> +##contig=<ID=chr20,length=64444167> +##contig=<ID=chr21,length=46709983> +##contig=<ID=chr22,length=50818468> +##contig=<ID=chr3,length=198295559> +##contig=<ID=chr4,length=190214555> +##contig=<ID=chr5,length=181538259> +##contig=<ID=chr6,length=170805979> +##contig=<ID=chr7,length=159345973> +##contig=<ID=chr8,length=145138636> +##contig=<ID=chr9,length=138394717> +##contig=<ID=chrM,length=16569> +##contig=<ID=chrX,length=156040895> +##contig=<ID=chrY,length=57227415> +##filter="SOMATIC" +##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL"> +##INFO=<ID=DP,Number=1,Type=Integer,Description="Total depth of quality bases"> +##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Indicates if record is a somatic mutation"> +##INFO=<ID=SS,Number=1,Type=String,Description="Somatic status of variant (0=Reference,1=Germline,2=Somatic,3=LOH, or 5=Unknown)"> +##INFO=<ID=SSC,Number=1,Type=String,Description="Somatic score in Phred scale (0-255) derived from somatic p-value"> +##INFO=<ID=GPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor+normal versus no variant for Germline calls"> +##INFO=<ID=SPV,Number=1,Type=Float,Description="Fisher's Exact Test P-value of tumor versus normal for Somatic/LOH calls"> +##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> +##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> +##FILTER=<ID=VarCount,Description="Fewer than 4 variant-supporting reads"> +##FILTER=<ID=VarFreq,Description="Variant allele frequency below 0.05"> +##FILTER=<ID=VarAvgRL,Description="Average clipped length of variant-supporting reads < 90"> +##FILTER=<ID=VarReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=VarDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=VarMMQS,Description="Average mismatch quality sum for variant reads > 100"> +##FILTER=<ID=VarMapQual,Description="Average mapping quality of variant reads < 15"> +##FILTER=<ID=VarBaseQual,Description="Average base quality of variant reads < 15"> +##FILTER=<ID=Strand,Description="Strand representation of variant reads < 0.01"> +##FILTER=<ID=RefAvgRL,Description="Average clipped length of ref-supporting reads < 90"> +##FILTER=<ID=RefReadPos,Description="Relative average read position < 0.1"> +##FILTER=<ID=RefDist3,Description="Average distance to effective 3' end < 0.1"> +##FILTER=<ID=RefMapQual,Description="Average mapping quality of reference reads < 15"> +##FILTER=<ID=RefBaseQual,Description="Average base quality of ref-supporting reads < 15"> +##FILTER=<ID=RefMMQS,Description="Average mismatch quality sum for ref-supporting reads > 100"> +##FILTER=<ID=MMQSdiff,Description="Mismatch quality sum difference (var - ref) > 50"> +##FILTER=<ID=MinMMQSdiff,Description="Mismatch quality sum difference (var - ref) < 50"> +##FILTER=<ID=MapQualDiff,Description="Mapping quality difference (ref - var) > 50"> +##FILTER=<ID=MaxBAQdiff,Description="Average base quality difference (ref - var) > 50"> +##FILTER=<ID=ReadLenDiff,Description="Average supporting read length difference (ref - var) > 0.25"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype code"> +##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype quality"> +##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> +##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> +##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Read depth for each allele on the forward strand"> +##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Read depth for each allele on the reverse strand"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR +chr1 64976 . C T 0 PASS DP=51;GPV=1;SPV=0.045103;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,1:9,7 +chr1 103756 . G T 0 PASS DP=66;GPV=1;SPV=0.032644;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:16,5:6,2 +chr1 185034 . A G 0 PASS DP=89;GPV=1;SPV=0.00088719;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:15,3:19,6 +chr1 186728 . A T 0 PASS DP=139;GPV=1;SPV=0.018661;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:61,15:31,5:30,10 +chr1 739365 . G A 0 PASS DP=125;GPV=1;SPV=0.043949;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:59,7:27,3:32,4 +chr1 790461 . T G 0 PASS DP=77;GPV=1;SPV=0.047347;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:17,4:14,4 +chr1 1290925 . G A 0 PASS DP=123;GPV=1;SPV=2.0989e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:38,21:20,12:18,9 +chr1 1749629 . G A 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,3:4,2 +chr1 2687442 . A G 0 PASS DP=67;GPV=1;SPV=0.045135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:19,4:13,1 +chr1 3934011 . C CTT 0 PASS DP=45;GPV=1;SPV=0.004222;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:6,6:3,3 +chr1 5673561 . C T 0 PASS DP=71;GPV=1;SPV=0.00023464;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:12,8:13,3 +chr1 5750713 . G A 0 PASS DP=87;GPV=1;SPV=0.00053311;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:15,5:16,4 +chr1 6160432 . GAGA G 0 PASS DP=42;GPV=1;SPV=0.096892;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:18,4:1,0 +chr1 6662128 . G GT 0 PASS DP=55;GPV=1;SPV=0.039538;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,9:13,5:10,4 +chr1 7083961 . C CT 0 PASS DP=52;GPV=1;SPV=0.00097732;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:7,4:9,4 +chr1 7572902 . T C 0 PASS DP=115;GPV=1;SPV=2.2819e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:39,26:18,16:21,10 +chr1 8007444 . T A 0 PASS DP=47;GPV=1;SPV=0.026369;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:11,4:7,4 +chr1 8263331 . ACG A 0 PASS DP=79;GPV=1;SPV=0.037745;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:22,3:15,2 +chr1 8781356 . C CAA 0 PASS DP=55;GPV=1;SPV=0.004796;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:11,9:9,3 +chr1 10273740 . C A 0 PASS DP=41;GPV=1;SPV=0.20798;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:8,5:5,2:3,3 +chr1 10538613 . T TTC 0 PASS DP=94;GPV=1;SPV=0.00068981;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:24,5:16,6 +chr1 11631652 . C T 0 PASS DP=70;GPV=1;SPV=2.0105e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:8,5:7,4 +chr1 12043425 . C A 0 PASS DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:16,3:10,2 +chr1 12876485 . C G 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr1 12879513 . G A 0 PASS DP=103;GPV=1;SPV=0.01756;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:39,13:19,9:20,4 +chr1 12887164 . A T 0 PASS DP=108;GPV=1;SPV=0.022406;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:18,3:26,6 +chr1 12936058 . G T 0 PASS DP=149;GPV=1;SPV=4.5404e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:65,15:49,8:16,7 +chr1 13251355 . G A 0 PASS DP=30;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:2,4:3,1 +chr1 14124658 . C T 0 PASS DP=92;GPV=1;SPV=8.4105e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:14,13:13,3 +chr1 15251295 . C A 0 PASS DP=75;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:17,5:6,4:11,1 +chr1 15971571 . A C 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2 +chr1 16200383 . A G 0 PASS DP=103;GPV=1;SPV=6.2138e-11;SS=2;SSC=102;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:26,31:21,15:5,16 +chr1 16508168 . C T 0 PASS DP=231;GPV=1;SPV=0.032064;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:103,12:52,3:51,9 +chr1 16553056 . T G 0 PASS DP=150;GPV=1;SPV=0.045458;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:59,15:26,12:33,3 +chr1 16561095 . C A 0 PASS DP=347;GPV=1;SPV=0.0093043;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:156,28:85,16:71,12 +chr1 16575059 . C T 0 PASS DP=179;GPV=1;SPV=0.048526;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:75,12:35,5:40,7 +chr1 16578491 . T C 0 PASS DP=300;GPV=1;SPV=0.032164;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:118,25:48,12:70,13 +chr1 16596571 . G A 0 PASS DP=339;GPV=1;SPV=0.032119;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:184:160,24:80,16:80,8 +chr1 16610160 . C T 0 PASS DP=376;GPV=1;SPV=0.031944;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:170,25:88,14:82,11 +chr1 16613024 . G T 0 PASS DP=390;GPV=1;SPV=0.017709;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:221:186,35:94,15:92,20 +chr1 16632466 . C G 0 PASS DP=303;GPV=1;SPV=0.025558;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:122,27:68,10:54,17 +chr1 16653179 . T C 0 PASS DP=148;GPV=1;SPV=0.03937;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:63,16:36,8:27,8 +chr1 16692440 . G A 0 PASS DP=147;GPV=1;SPV=0.008973;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:60,20:34,16:26,4 +chr1 16701425 . G A 0 PASS DP=128;GPV=1;SPV=0.048492;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:66,8:36,5:30,3 +chr1 16731644 . T C 0 PASS DP=126;GPV=1;SPV=0.027018;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:54,9:29,2:25,7 +chr1 16756272 . A T 0 PASS DP=398;GPV=1;SPV=0.036166;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:171,30:86,11:85,19 +chr1 16774088 . T C 0 PASS DP=171;GPV=1;SPV=0.00059662;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:65,21:29,12:36,9 +chr1 16882059 . TAA T 0 PASS DP=57;GPV=1;SPV=0.020314;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,8:9,2:9,6 +chr1 16896455 . C G 0 PASS DP=202;GPV=1;SPV=0.03107;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:34,7:66,11 +chr1 16902883 . G A 0 PASS DP=116;GPV=1;SPV=0.048236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:20,6:27,3 +chr1 17175906 . CTA C 0 PASS DP=22;GPV=1;SPV=0.0065492;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,7:2,5:2,2 +chr1 17487165 . T A 0 PASS DP=85;GPV=1;SPV=2.8454e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:22,7:9,8 +chr1 19683758 . CTTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.0074891;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:3,4:2,1 +chr1 20651805 . A T 0 PASS DP=72;GPV=1;SPV=0.029828;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:10,3:17,8 +chr1 21387063 . CG C 0 PASS DP=17;GPV=1;SPV=0.175;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1 +chr1 21945968 . CA C 0 PASS DP=36;GPV=1;SPV=0.016624;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,8:4,5:1,3 +chr1 24901173 . C A 0 PASS DP=86;GPV=1;SPV=8.7093e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:12,12:10,11 +chr1 25098735 . G A 0 PASS DP=100;GPV=1;SPV=2.3507e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:13,10:19,10 +chr1 25764475 . C T 0 PASS DP=85;GPV=1;SPV=1.2544e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:12,11:12,9 +chr1 26037226 . C CT 0 PASS DP=29;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,3:7,2 +chr1 26095828 . G A 0 PASS DP=88;GPV=1;SPV=4.9557e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:35,16:18,10:17,6 +chr1 26407725 . A G 0 PASS DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:8,5:6,11 +chr1 26593918 . C CT 0 PASS DP=40;GPV=1;SPV=0.03809;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,7:13,6:5,1 +chr1 26818069 . T TG 0 PASS DP=46;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr1 28236460 . T A 0 PASS DP=98;GPV=1;SPV=1.8875e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:16,6:14,9 +chr1 29873254 . T TA 0 PASS DP=50;GPV=1;SPV=0.035132;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,7:7,1 +chr1 31186395 . T G 0 PASS DP=41;GPV=1;SPV=0.097902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,4:2,3:2,1 +chr1 31850450 . GT G 0 PASS DP=48;GPV=1;SPV=0.030558;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:13,8:8,6 +chr1 34362437 . C T 0 PASS DP=89;GPV=1;SPV=3.6106e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:34,25:16,11:18,14 +chr1 34371742 . T TA 0 PASS DP=46;GPV=1;SPV=0.00054583;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:2,10:1,2:1,8 +chr1 34512079 . T C 0 PASS DP=101;GPV=1;SPV=1.245e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,23:9,12:16,11 +chr1 35705066 . G A 0 PASS DP=33;GPV=1;SPV=0.011795;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:8,6:4,1 +chr1 36213962 . G A 0 PASS DP=45;GPV=1;SPV=0.031374;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,7:11,5:3,2 +chr1 37078451 . G A 0 PASS DP=53;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:6,2:3,1:3,1 +chr1 37359811 . G T 0 PASS DP=78;GPV=1;SPV=0.00099533;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:11,4:13,3 +chr1 39194317 . ATTTCTTTTCT A 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:6,2:23,2 +chr1 39940663 . A C 0 PASS DP=104;GPV=1;SPV=3.7619e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:39,27:27,13:12,14 +chr1 41545371 . C A 0 PASS DP=37;GPV=1;SPV=0.0020332;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:6,5:3,5 +chr1 42057169 . T TA 0 PASS DP=55;GPV=1;SPV=0.0021337;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:13,4:6,4 +chr1 42921136 . C CTTTT 0 PASS DP=44;GPV=1;SPV=0.0034225;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:9,10:2,1 +chr1 44065405 . GTT G 0 PASS DP=47;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:10,7:6,1 +chr1 44091635 . CA C 0 PASS DP=43;GPV=1;SPV=0.016023;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,9:4,1 +chr1 44259924 . C T 0 PASS DP=81;GPV=1;SPV=0.022447;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:30,7:10,4 +chr1 44386736 . T C 0 PASS DP=96;GPV=1;SPV=8.408e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:24,25:9,9:15,16 +chr1 46232818 . T A 0 PASS DP=76;GPV=1;SPV=0.01117;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:24,15:14,6:10,9 +chr1 47550338 . CTT C 0 PASS DP=31;GPV=1;SPV=0.049428;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:4,5:4,2 +chr1 54476217 . A C 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:4,2:26,2 +chr1 55047134 . T C 0 PASS DP=69;GPV=1;SPV=3.8594e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:4,3:14,7 +chr1 56322079 . C CAA 0 PASS DP=44;GPV=1;SPV=0.021839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,12:8,9:4,3 +chr1 57924627 . T A 0 PASS DP=52;GPV=1;SPV=0.046726;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,2:11,2 +chr1 58387722 . C T 0 PASS DP=37;GPV=1;SPV=0.29371;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,3:6,3:0,0 +chr1 59846599 . TC T 0 PASS DP=30;GPV=1;SPV=0.04724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,1:7,3 +chr1 60376642 . A ACAC 0 PASS DP=61;GPV=1;SPV=0.017385;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:3,6:1,2:2,4 +chr1 61952253 . T TGAGAGAGA 0 PASS DP=78;GPV=1;SPV=0.0020298;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:13,12:13,4 +chr1 64603266 . G A 0 PASS DP=73;GPV=1;SPV=2.2204e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:13,10:6,9 +chr1 65708676 . C CT 0 PASS DP=19;GPV=1;SPV=0.00087413;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:0,5:1,1 +chr1 66434631 . C CT 0 PASS DP=37;GPV=1;SPV=0.21414;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:12,3:10,2 +chr1 67953866 . T TCTC 0 PASS DP=22;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:3,2:2,5 +chr1 68354547 . A G 0 PASS DP=33;GPV=1;SPV=0.030435;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:6,1:3,4 +chr1 69004827 . T G 0 PASS DP=83;GPV=1;SPV=1.1895e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:13,11:18,8 +chr1 70658070 . T C 0 PASS DP=37;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr1 71597432 . G C 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:3,2:2,1 +chr1 72088796 . CTTTTTTT C 0 PASS DP=33;GPV=1;SPV=0.013867;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,6:2,1 +chr1 74056251 . C T 0 PASS DP=82;GPV=1;SPV=2.1076e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:16,15:11,4 +chr1 77449659 . G T 0 PASS DP=75;GPV=1;SPV=0.04342;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:17,2:19,3 +chr1 79571375 . G A 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:7,2:12,2 +chr1 79649737 . C CTCTT 0 PASS DP=52;GPV=1;SPV=0.022632;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:5,7:12,2 +chr1 82541637 . C A 0 PASS DP=88;GPV=1;SPV=4.3414e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,16:9,7:15,9 +chr1 83487712 . T G 0 PASS DP=94;GPV=1;SPV=0.019975;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:19,2:20,8 +chr1 84498559 . G A 0 PASS DP=51;GPV=1;SPV=0.028003;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,3:11,2 +chr1 86738252 . G GT 0 PASS DP=73;GPV=1;SPV=0.027342;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:18,7:13,4 +chr1 86768048 . G A 0 PASS DP=95;GPV=1;SPV=2.5366e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:12,9:16,9 +chr1 87891193 . CA C 0 PASS DP=46;GPV=1;SPV=0.035545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,8:10,7:3,1 +chr1 88047083 . GAA G 0 PASS DP=47;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,4:9,3:4,1 +chr1 89502764 . T TCACACACACA 0 PASS DP=45;GPV=1;SPV=0.047956;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:5,3:8,2 +chr1 89776380 . TA T 0 PASS DP=72;GPV=1;SPV=0.077619;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,3:17,2 +chr1 89776412 . T TA 0 PASS DP=64;GPV=1;SPV=0.041061;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,10:10,7:9,3 +chr1 96825934 . ATGTGTGTG A 0 PASS DP=48;GPV=1;SPV=0.0054311;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:5,5:8,5 +chr1 100327770 . G GTGTGT 0 PASS DP=59;GPV=1;SPV=0.0045922;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,14:6,8:11,6 +chr1 100327773 . T G 0 PASS DP=55;GPV=1;SPV=0.01147;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,13:8,7:9,6 +chr1 100550598 . C CT 0 PASS DP=58;GPV=1;SPV=0.17898;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,5:6,2:30,3 +chr1 101258579 . GTCTTTCTT G 0 PASS DP=62;GPV=1;SPV=0.038416;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,5:6,3:15,2 +chr1 101855904 . G C 0 PASS DP=80;GPV=1;SPV=5.197e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:16,6:14,9 +chr1 102769692 . G A 0 PASS DP=79;GPV=1;SPV=1.1765e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,3:14,12 +chr1 105154315 . A C 0 PASS DP=95;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:46:1,3:1,1:0,2 +chr1 105171195 . CTT C 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,4:2,1 +chr1 108658099 . A G 0 PASS DP=47;GPV=1;SPV=0.092532;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,4:8,3:8,1 +chr1 108865213 . A G 0 PASS DP=49;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,6:13,3:1,3 +chr1 109171951 . C A 0 PASS DP=78;GPV=1;SPV=0.0019813;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:18,6:21,9 +chr1 111005120 . T TA 0 PASS DP=55;GPV=1;SPV=0.040965;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,4:12,1 +chr1 111502084 . AAT A 0 PASS DP=52;GPV=1;SPV=0.0025292;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:6,4:9,9 +chr1 111502097 . G T 0 PASS DP=52;GPV=1;SPV=0.0020721;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,14:7,4:8,10 +chr1 111502124 . A ATAGG 0 PASS DP=56;GPV=1;SPV=0.0019759;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:7,3:12,9 +chr1 111502125 . G A 0 PASS DP=49;GPV=1;SPV=0.0025754;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:7,3:9,9 +chr1 112337596 . CTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,8:5,6:2,2 +chr1 113069477 . C CA 0 PASS DP=18;GPV=1;SPV=0.034965;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:2,7:1,1:1,6 +chr1 113070430 . G A 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,4:2,0 +chr1 113938941 . C T 0 PASS DP=35;GPV=1;SPV=0.006865;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,6:2,3:4,3 +chr1 114660139 . C T 0 PASS DP=73;GPV=1;SPV=3.1203e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:9,11:18,7 +chr1 114789069 . C CTTTCTTTT 0 PASS DP=46;GPV=1;SPV=0.045455;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,4:6,1:7,3 +chr1 115079137 . C CCACA 0 PASS DP=59;GPV=1;SPV=0.0041929;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:7,4:7,6 +chr1 115415941 . G GATATATATATATATATAT 0 PASS DP=45;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:10,3:12,1 +chr1 115910145 . C CA 0 PASS DP=55;GPV=1;SPV=0.0017056;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:11,6:6,1 +chr1 116253903 . C T 0 PASS DP=86;GPV=1;SPV=0.00092166;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:11,2:19,6 +chr1 117134134 . G GTGTACGTA 0 PASS DP=84;GPV=1;SPV=0.01036;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,7:14,5:19,2 +chr1 118139338 . A G 0 PASS DP=98;GPV=1;SPV=0.0025423;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:27,2:19,8 +chr1 118784421 . C CATAT 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,6:3,2 +chr1 120168801 . T TCA 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,2:9,2 +chr1 120169213 . T C 0 PASS DP=78;GPV=1;SPV=0.051443;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:21,4:18,1 +chr1 120345124 . T G 0 PASS DP=64;GPV=1;SPV=0.031399;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,4:12,3 +chr1 120446150 . A T 0 PASS DP=108;GPV=1;SPV=0.006307;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:24,11:20,4 +chr1 120860952 . A G 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:2,6:6,1 +chr1 121537706 . C A 0 PASS DP=123;GPV=1;SPV=0.03412;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:53,16:29,13:24,3 +chr1 121537819 . C G 0 PASS DP=113;GPV=1;SPV=0.0057897;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:42,18:26,7:16,11 +chr1 121673339 . G A 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr1 121692848 . A T 0 PASS DP=24;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:1,1:7,3 +chr1 121817176 . T C 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,3:16,1 +chr1 121817303 . C T 0 PASS DP=74;GPV=1;SPV=0.045506;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:19,2:12,2 +chr1 121817879 . A T 0 PASS DP=69;GPV=1;SPV=0.048616;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:17,3:11,3 +chr1 121908948 . T C 0 PASS DP=65;GPV=1;SPV=0.026058;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:1,2:21,8 +chr1 121919722 . G A 0 PASS DP=51;GPV=1;SPV=0.018729;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,5:6,2 +chr1 122070636 . C T 0 PASS DP=24;GPV=1;SPV=0.010718;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,9:2,3:3,6 +chr1 122382529 . T C 0 PASS DP=119;GPV=1;SPV=0.047399;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:40,8:15,1 +chr1 123243045 . T G 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr1 124797823 . A T 0 PASS DP=71;GPV=1;SPV=0.0051201;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:20,7:11,7 +chr1 124804084 . T A 0 PASS DP=135;GPV=1;SPV=0.045229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:54,7:30,6:24,1 +chr1 124820032 . C A 0 PASS DP=48;GPV=1;SPV=0.13227;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:4,3:25,3 +chr1 124846536 . G A 0 PASS DP=59;GPV=1;SPV=0.079011;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:26,3:2,1 +chr1 124847040 . T C 0 PASS DP=277;GPV=1;SPV=0.0091812;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:143:121,22:21,10:100,12 +chr1 124847056 . A T 0 PASS DP=239;GPV=1;SPV=0.0069251;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:15,11:85,9 +chr1 124861830 . T G 0 PASS DP=181;GPV=1;SPV=0.019611;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:80,16:71,15:9,1 +chr1 124864475 . G C 0 PASS DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:29,3:6,1 +chr1 124881542 . C A 0 PASS DP=55;GPV=1;SPV=0.19365;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:1,0:32,4 +chr1 124895211 . T A 0 PASS DP=38;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,3:9,2 +chr1 124919453 . G A 0 PASS DP=52;GPV=1;SPV=0.018505;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:11,1:11,5 +chr1 125141867 . T G 0 PASS DP=112;GPV=1;SPV=0.036077;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,7:16,5:26,2 +chr1 125174130 . G T 0 PASS DP=304;GPV=1;SPV=0.0015423;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:128,37:90,32:38,5 +chr1 143210830 . A T 0 PASS DP=697;GPV=1;SPV=0.030353;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:360:312,48:298,24:14,24 +chr1 143210881 . C T 0 PASS DP=780;GPV=1;SPV=0.010966;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:407:357,49:338,25:19,24 +chr1 143258960 . A C 0 PASS DP=202;GPV=1;SPV=0.015095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:84,23:23,5:61,18 +chr1 143287623 . TA T 0 PASS DP=71;GPV=1;SPV=0.073933;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:25,4:13,1 +chr1 143287625 . T G 0 PASS DP=72;GPV=1;SPV=0.060799;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:25,4:12,1 +chr1 143287626 . A G 0 PASS DP=77;GPV=1;SPV=0.034354;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:26,5:13,1 +chr1 143306655 . TA T 0 PASS DP=114;GPV=1;SPV=0.036552;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:34,4:13,4 +chr1 143306705 . T A 0 PASS DP=116;GPV=1;SPV=0.0049119;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:49,10:38,6:11,4 +chr1 143341813 . TA T 0 PASS DP=28;GPV=1;SPV=0.0054348;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,5:1,2 +chr1 144106291 . C T 0 PASS DP=31;GPV=1;SPV=0.0081121;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,3:2,6 +chr1 144422041 . C A 0 PASS DP=51;GPV=1;SPV=0.041838;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,4:15,1 +chr1 144926620 . G T 0 PASS DP=105;GPV=1;SPV=0.0043757;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:25,8:18,2 +chr1 144956439 . C CT 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:5,3:6,1 +chr1 146040573 . CT C 0 PASS DP=34;GPV=1;SPV=0.11096;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,4:8,1 +chr1 146122266 . C G 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr1 146186479 . C T 0 PASS DP=111;GPV=1;SPV=0.044985;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:23,9:25,4 +chr1 146670550 . C G 0 PASS DP=42;GPV=1;SPV=0.00042668;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:10,18:6,13:4,5 +chr1 146911184 . T C 0 PASS DP=114;GPV=1;SPV=0.010436;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:26,2:32,6 +chr1 147202313 . T C 0 PASS DP=41;GPV=1;SPV=0.046544;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:12,6:5,3 +chr1 148156731 . C T 0 PASS DP=61;GPV=1;SPV=0.019962;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:0,3:24,2 +chr1 148418215 . G T 0 PASS DP=95;GPV=1;SPV=0.027816;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:54,8:26,4:28,4 +chr1 148702391 . C T 0 PASS DP=76;GPV=1;SPV=0.032289;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:13,4:25,2 +chr1 148941544 . T G 0 PASS DP=33;GPV=1;SPV=0.024462;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr1 148952750 . T G 0 PASS DP=83;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,4:8,3:15,1 +chr1 149075897 . TA T 0 PASS DP=151;GPV=1;SPV=0.01295;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:67,16:30,7:37,9 +chr1 149137986 . A T 0 PASS DP=53;GPV=1;SPV=0.059933;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr1 150318976 . G A 0 PASS DP=62;GPV=1;SPV=0.020934;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,1:16,6 +chr1 150885343 . CAAA C 0 PASS DP=42;GPV=1;SPV=0.013999;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,7:4,6:3,1 +chr1 151450023 . A ATT 0 PASS DP=46;GPV=1;SPV=0.065277;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,6:11,4:3,2 +chr1 151517853 . C CTT 0 PASS DP=64;GPV=1;SPV=0.00072083;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,20:9,17:11,3 +chr1 151629586 . A AT 0 PASS DP=74;GPV=1;SPV=0.009128;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,9:17,6:19,3 +chr1 151692406 . C CT 0 PASS DP=23;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:2,2:5,2 +chr1 152644015 . TCACA T 0 PASS DP=63;GPV=1;SPV=0.023594;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,9:9,2 +chr1 152964062 . A AC 0 PASS DP=64;GPV=1;SPV=0.17382;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,5:30,2:10,3 +chr1 153112676 . C T 0 PASS DP=114;GPV=1;SPV=0.00027577;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:59,20:29,13:30,7 +chr1 153406780 . A G 0 PASS DP=95;GPV=1;SPV=0.0015324;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:25,5:19,6 +chr1 153987515 . C CA 0 PASS DP=43;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:10,3:14,1 +chr1 154490794 . G GT 0 PASS DP=82;GPV=1;SPV=0.0084221;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,10:19,7:23,3 +chr1 154868936 . CAA C 0 PASS DP=60;GPV=1;SPV=0.18741;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:13,1:23,3 +chr1 155436491 . C CTT 0 PASS DP=47;GPV=1;SPV=0.15941;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,4:13,3:12,1 +chr1 155729884 . C T 0 PASS DP=111;GPV=1;SPV=0.001145;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:57,14:27,9:30,5 +chr1 156310037 . C CA 0 PASS DP=38;GPV=1;SPV=0.023788;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,12:8,11:1,1 +chr1 156313363 . AG A 0 PASS DP=61;GPV=1;SPV=0.13544;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:13,1:20,3 +chr1 156578259 . T A 0 PASS DP=58;GPV=1;SPV=0.046332;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:6,5:19,7 +chr1 157180917 . A ACTCTCTCTCTCTCT 0 PASS DP=52;GPV=1;SPV=0.0020002;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,12:8,3:6,9 +chr1 159483237 . T C 0 PASS DP=75;GPV=1;SPV=0.007626;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:23,4:16,7 +chr1 159932249 . C T 0 PASS DP=100;GPV=1;SPV=2.2441e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:42,19:25,12:17,7 +chr1 160112965 . C G 0 PASS DP=67;GPV=1;SPV=0.033188;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:20,7:11,2 +chr1 160751856 . CTCTCTCTATATATATA C 0 PASS DP=50;GPV=1;SPV=0.032155;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:5,4:15,5 +chr1 160853782 . TA T 0 PASS DP=49;GPV=1;SPV=0.14184;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,8:7,7:14,1 +chr1 161471866 . G C 0 PASS DP=297;GPV=1;SPV=0.048391;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:147,19:71,5:76,14 +chr1 161559730 . G A 0 PASS DP=93;GPV=1;SPV=0.039102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:26,4:21,5 +chr1 161641777 . T A 0 PASS DP=95;GPV=1;SPV=0.051843;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:29,4:24,2 +chr1 161646609 . G T 0 PASS DP=108;GPV=1;SPV=0.0037074;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:54,16:25,10:29,6 +chr1 162403488 . GAAAAAAAAA G 0 PASS DP=52;GPV=1;SPV=0.096637;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,4:15,2:9,2 +chr1 163548254 . GTTTTTT G 0 PASS DP=41;GPV=1;SPV=0.0089185;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,4:7,5 +chr1 163794200 . T C 0 PASS DP=103;GPV=1;SPV=0.021113;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,11:27,8:26,3 +chr1 164927646 . C CTTT 0 PASS DP=47;GPV=1;SPV=0.0098611;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,10:5,9:7,1 +chr1 165622729 . G C 0 PASS DP=67;GPV=1;SPV=0.0063951;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:23,5:8,4 +chr1 165820486 . T TAC 0 PASS DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,2:8,2 +chr1 166677437 . G GTATATATATA 0 PASS DP=54;GPV=1;SPV=0.028036;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:14,10:10,2 +chr1 167061586 . GT G 0 PASS DP=52;GPV=1;SPV=0.034541;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:17,8:5,2 +chr1 167985210 . T G 0 PASS DP=97;GPV=1;SPV=0.0023257;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:15,2:30,8 +chr1 168639090 . TTC T 0 PASS DP=52;GPV=1;SPV=0.047306;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,10:5,5:18,5 +chr1 169620795 . T TTGTGTG 0 PASS DP=40;GPV=1;SPV=0.0094953;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,8:0,3:7,5 +chr1 169778636 . TG T 0 PASS DP=53;GPV=1;SPV=0.24396;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,4:16,2:17,2 +chr1 169810834 . ATTTTTT A 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:8,2:5,2 +chr1 169847313 . TAAAAA T 0 PASS DP=41;GPV=1;SPV=0.030435;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,12:8,9:1,3 +chr1 170226562 . T TCCTCCCTCCCTCCCTCCCTC 0 PASS DP=27;GPV=1;SPV=0.18814;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:0,0:13,4 +chr1 170585727 . T TA 0 PASS DP=35;GPV=1;SPV=0.2201;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:16,5:5,1 +chr1 170667312 . A G 0 PASS DP=97;GPV=1;SPV=0.16587;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:11,5:8,2:3,3 +chr1 171353802 . CT C 0 PASS DP=72;GPV=1;SPV=0.01601;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:25,5:13,4 +chr1 171944377 . A G 0 PASS DP=94;GPV=1;SPV=0.0034588;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:22,5:21,4 +chr1 172694443 . C CAT 0 PASS DP=110;GPV=1;SPV=0.025491;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,7:22,2:35,5 +chr1 172758534 . C CTTTT 0 PASS DP=48;GPV=1;SPV=0.0034427;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,12:7,9:8,3 +chr1 174136219 . T A 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:9,2:20,2 +chr1 174265544 . G GA 0 PASS DP=37;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,8:6,6:6,2 +chr1 174378863 . T C 0 PASS DP=59;GPV=1;SPV=0.0011386;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,1:10,8 +chr1 174378864 . G A 0 PASS DP=60;GPV=1;SPV=0.0018974;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:12,1:11,8 +chr1 175125703 . CTCTTTCTTTCTT C 0 PASS DP=36;GPV=1;SPV=0.34557;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,4:0,2:14,2 +chr1 175403206 . G A 0 PASS DP=99;GPV=1;SPV=3.1057e-13;SS=2;SSC=125;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:19,34:9,14:10,20 +chr1 176041345 . CT C 0 PASS DP=75;GPV=1;SPV=0.10224;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:26,5:22,2 +chr1 176178338 . CAA C 0 PASS DP=81;GPV=1;SPV=0.12076;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:51,6:35,3:16,3 +chr1 177734589 . GCTT G 0 PASS DP=47;GPV=1;SPV=0.068571;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:8,2:17,4 +chr1 178696324 . AGAT A 0 PASS DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:9,3:13,4 +chr1 179597332 . C CT 0 PASS DP=41;GPV=1;SPV=0.032072;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,8:7,1 +chr1 180980206 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.068436;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:9,4:5,1 +chr1 181894088 . G A 0 PASS DP=100;GPV=1;SPV=2.0132e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:29,41:17,23:12,18 +chr1 182341376 . CT C 0 PASS DP=54;GPV=1;SPV=0.11921;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:18,4:13,1 +chr1 183438201 . G GAA 0 PASS DP=82;GPV=1;SPV=0.051443;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,5:26,2:13,3 +chr1 184884215 . CT C 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:6,2:2,4 +chr1 185652665 . A T 0 PASS DP=105;GPV=1;SPV=0.0013673;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:21,7:30,5 +chr1 185927910 . A G 0 PASS DP=91;GPV=1;SPV=0.00015783;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:18,6:21,9 +chr1 186631576 . G A 0 PASS DP=33;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,6:9,4:5,2 +chr1 186868071 . C CT 0 PASS DP=42;GPV=1;SPV=0.018671;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:8,7:5,1 +chr1 186966119 . A T 0 PASS DP=63;GPV=1;SPV=0.18481;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,4:13,2:15,2 +chr1 187686787 . A C 0 PASS DP=115;GPV=1;SPV=3.8302e-12;SS=2;SSC=114;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:30,45:13,23:17,22 +chr1 189117603 . C CT 0 PASS DP=34;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:7,4:7,1 +chr1 189161360 . T A 0 PASS DP=36;GPV=1;SPV=0.0014886;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,20:3,9:4,11 +chr1 190018670 . G GAT 0 PASS DP=24;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,6:1,4:2,2 +chr1 190195804 . C G 0 PASS DP=83;GPV=1;SPV=0.00048878;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:16,6:21,8 +chr1 190365808 . A G 0 PASS DP=47;GPV=1;SPV=0.26877;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,6:7,4:6,2 +chr1 191299707 . C CTT 0 PASS DP=39;GPV=1;SPV=0.064151;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,6:11,5:8,1 +chr1 191349460 . ATTTTTTTTTTT A 0 PASS DP=50;GPV=1;SPV=0.0073497;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,9:11,7:9,2 +chr1 191907551 . TTC T 0 PASS DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:8,2:23,3 +chr1 192799509 . TA T 0 PASS DP=46;GPV=1;SPV=0.049128;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:16,4:8,3 +chr1 192857317 . G A 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr1 193550723 . T A 0 PASS DP=77;GPV=1;SPV=4.8037e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:31,21:16,13:15,8 +chr1 194098959 . T TA 0 PASS DP=40;GPV=1;SPV=0.027999;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,16:8,6:6,10 +chr1 194280332 . T C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:7,2:1,2 +chr1 194303668 . TATAA T 0 PASS DP=197;GPV=1;SPV=0.042129;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:101,22:58,9:43,13 +chr1 194398803 . G C 0 PASS DP=92;GPV=1;SPV=0.074661;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:6,6:4,2:2,4 +chr1 194578836 . C A 0 PASS DP=84;GPV=1;SPV=0.0037205;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:17,3:23,7 +chr1 195886836 . C A 0 PASS DP=98;GPV=1;SPV=0.0032849;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:51,12:31,7:20,5 +chr1 195990833 . G A 0 PASS DP=55;GPV=1;SPV=0.21542;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:12,3:24,2 +chr1 196820506 . T G 0 PASS DP=57;GPV=1;SPV=0.0043846;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,5:8,7 +chr1 198524124 . T A 0 PASS DP=86;GPV=1;SPV=0.54715;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:16,4:5,1:11,3 +chr1 200127708 . AAATAT A 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,2:8,2 +chr1 200383093 . CTT C 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:16,2:3,2 +chr1 200509269 . C CTTT 0 PASS DP=36;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:2,8:2,1 +chr1 200581761 . CT C 0 PASS DP=49;GPV=1;SPV=0.003052;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:8,7:9,8 +chr1 200686036 . C CAAAAAAAA 0 PASS DP=44;GPV=1;SPV=0.057386;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,10:8,9:8,1 +chr1 200774073 . G T 0 PASS DP=120;GPV=1;SPV=3.62e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:51,16:30,7:21,9 +chr1 200774074 . T C 0 PASS DP=116;GPV=1;SPV=0.00029843;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:52,13:30,6:22,7 +chr1 202149367 . A G 0 PASS DP=87;GPV=1;SPV=1.984e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,20:14,10:16,10 +chr1 202401361 . A AT 0 PASS DP=24;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:6,2:3,3 +chr1 202786166 . A AT 0 PASS DP=44;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,12:4,10:2,2 +chr1 202938064 . AAAAG A 0 PASS DP=32;GPV=1;SPV=0.030401;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,7:8,3 +chr1 203479706 . CAA C 0 PASS DP=59;GPV=1;SPV=0.060553;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,9:19,8:9,1 +chr1 204158411 . C CT 0 PASS DP=42;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,8:6,7:4,1 +chr1 204452288 . C CTTTT 0 PASS DP=33;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,6:3,2:10,4 +chr1 204811028 . CT C 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,4:3,1 +chr1 206267113 . C T 0 PASS DP=105;GPV=1;SPV=0.021607;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:30,3:25,4 +chr1 206523350 . AT A 0 PASS DP=40;GPV=1;SPV=0.035283;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:4,1:15,6 +chr1 207617691 . CCTTT C 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:5,11:8,5 +chr1 208086990 . TGAGA T 0 PASS DP=44;GPV=1;SPV=0.004662;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:1,7:0,5:1,2 +chr1 208221381 . GTT G 0 PASS DP=41;GPV=1;SPV=0.039921;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,7:12,6:3,1 +chr1 208844667 . GAAAGGA G 0 PASS DP=60;GPV=1;SPV=0.0091986;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:16,7:11,1 +chr1 208845676 . AATAG A 0 PASS DP=88;GPV=1;SPV=9.3443e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:14,11:9,8 +chr1 209698180 . TAGA T 0 PASS DP=89;GPV=1;SPV=0.040883;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:25,6:12,2:13,4 +chr1 210109590 . AG A 0 PASS DP=70;GPV=1;SPV=0.057106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3 +chr1 210867364 . T C 0 PASS DP=96;GPV=1;SPV=0.1569;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:39,7:19,3:20,4 +chr1 211029334 . TA T 0 PASS DP=46;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,13:6,6:10,7 +chr1 212168573 . A ATATTTTTT 0 PASS DP=40;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,6:10,3:5,3 +chr1 212481402 . T TAA 0 PASS DP=54;GPV=1;SPV=0.15614;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,4:14,2:14,2 +chr1 212633936 . C CT 0 PASS DP=58;GPV=1;SPV=0.027364;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:19,4:8,2 +chr1 212851790 . TA T 0 PASS DP=53;GPV=1;SPV=0.00096505;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:19,13:2,1 +chr1 213363772 . T C 0 PASS DP=23;GPV=1;SPV=0.0045767;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,3:4,3 +chr1 214350707 . A ATTT 0 PASS DP=42;GPV=1;SPV=0.032805;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,10:7,6:4,4 +chr1 216039333 . G A 0 PASS DP=99;GPV=1;SPV=0.0018064;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:21,8:26,3 +chr1 216098427 . G A 0 PASS DP=89;GPV=1;SPV=0.0032764;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:44,11:27,6:17,5 +chr1 216377791 . GAGAAGGAAAGAAATAA G 0 PASS DP=37;GPV=1;SPV=0.10447;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:9,3:7,1 +chr1 217080671 . GTT G 0 PASS DP=48;GPV=1;SPV=0.25926;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,4:9,3:6,1 +chr1 217188193 . A G 0 PASS DP=69;GPV=1;SPV=0.028508;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,6:15,1:10,5 +chr1 217694010 . G A 0 PASS DP=53;GPV=1;SPV=0.03781;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:14,9:11,5 +chr1 217795362 . C CT 0 PASS DP=31;GPV=1;SPV=0.087294;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:6,6:7,1 +chr1 220032243 . T A 0 PASS DP=75;GPV=1;SPV=0.18462;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:6,3:3,1:3,2 +chr1 220835311 . GA G 0 PASS DP=48;GPV=1;SPV=0.027649;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:20,5:3,2 +chr1 220883332 . C G 0 PASS DP=73;GPV=1;SPV=3.0121e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:20,31:10,13:10,18 +chr1 220952530 . C CTA 0 PASS DP=63;GPV=1;SPV=0.058243;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:16,5:20,2 +chr1 220971720 . A AAT 0 PASS DP=68;GPV=1;SPV=0.027829;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:14,2:21,5 +chr1 221983183 . C CGT 0 PASS DP=37;GPV=1;SPV=0.027219;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,12:8,9:6,3 +chr1 222039722 . A G 0 PASS DP=49;GPV=1;SPV=0.012061;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:10,1:10,6 +chr1 222138220 . GTA G 0 PASS DP=75;GPV=1;SPV=0.0014895;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:15,4:19,8 +chr1 222154901 . AAAAAAC A 0 PASS DP=43;GPV=1;SPV=0.017042;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:12,9:4,1 +chr1 222480540 . G T 0 PASS DP=46;GPV=1;SPV=0.091614;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,1:7,3 +chr1 223439672 . T TCTC 0 PASS DP=53;GPV=1;SPV=0.20063;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:12,2:22,3 +chr1 223675743 . C G 0 PASS DP=61;GPV=1;SPV=0.10445;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,7:22,3:3,4 +chr1 223682908 . CT C 0 PASS DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:12,2:2,2 +chr1 223930244 . T G 0 PASS DP=60;GPV=1;SPV=0.0024349;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:7,9:18,1 +chr1 224209064 . G A 0 PASS DP=71;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,9:18,6:7,3 +chr1 224443682 . GATATCT G 0 PASS DP=38;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,4:8,1 +chr1 224452781 . C CA 0 PASS DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,15:8,13:6,2 +chr1 225831560 . G A 0 PASS DP=95;GPV=1;SPV=0.031932;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:26,7:5,1:21,6 +chr1 226064434 . A T 0 PASS DP=75;GPV=1;SPV=0.031822;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:23,5:19,3 +chr1 226504641 . A G 0 PASS DP=83;GPV=1;SPV=0.0073028;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:45,12:33,6:12,6 +chr1 227126468 . G A 0 PASS DP=80;GPV=1;SPV=0.13974;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,4:14,2:15,2 +chr1 227156121 . T G 0 PASS DP=82;GPV=1;SPV=0.030583;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:11,7:7,4:4,3 +chr1 227196338 . C CTTTTTTT 0 PASS DP=32;GPV=1;SPV=0.035523;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,5:3,3 +chr1 227380955 . G T 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,3:20,1 +chr1 228819196 . G A 0 PASS DP=92;GPV=1;SPV=5.8392e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:26,38:17,19:9,19 +chr1 229590256 . G A 0 PASS DP=67;GPV=1;SPV=0.024751;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:12,7:4,1:8,6 +chr1 230319848 . CT C 0 PASS DP=44;GPV=1;SPV=0.0031524;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:6,9:4,2 +chr1 231615380 . T C 0 PASS DP=61;GPV=1;SPV=0.026121;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,12:11,6:16,6 +chr1 232123741 . C T 0 PASS DP=119;GPV=1;SPV=0.0057052;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:46,19:18,6:28,13 +chr1 232568977 . G A 0 PASS DP=101;GPV=1;SPV=5.4628e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:27,6:14,9 +chr1 232656016 . A ATTTTT 0 PASS DP=54;GPV=1;SPV=0.011272;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:10,14:6,10:4,4 +chr1 233918822 . A C 0 PASS DP=65;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:11,7:5,1:6,6 +chr1 233922486 . C CT 0 PASS DP=54;GPV=1;SPV=0.0023473;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:13,17:9,7:4,10 +chr1 234143288 . C CT 0 PASS DP=53;GPV=1;SPV=0.13974;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:21,3:8,1 +chr1 234446633 . A AAATTATATAATTTCTTAATATAT 0 PASS DP=97;GPV=1;SPV=0.014645;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:23,4:17,10 +chr1 234779794 . C T 0 PASS DP=267;GPV=1;SPV=0.009407;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:118,30:62,18:56,12 +chr1 234946032 . AAAAAAATATATATATAT A 0 PASS DP=26;GPV=1;SPV=0.018593;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,9:4,6:4,3 +chr1 236842784 . G GTATATATATA 0 PASS DP=42;GPV=1;SPV=0.01095;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,10:5,6:4,4 +chr1 237565157 . C CTT 0 PASS DP=55;GPV=1;SPV=0.015259;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,12:1,3:24,9 +chr1 237952151 . TATATATATATATA T 0 PASS DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,1:5,4 +chr1 237952166 . A T 0 PASS DP=26;GPV=1;SPV=0.14141;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,4:4,1:0,3 +chr1 238153670 . TTCTCTCTCTC T 0 PASS DP=51;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,13:5,7:12,6 +chr1 238188360 . CCTCCTCCTTCTTCTTCTTCTT C 0 PASS DP=40;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,4:1,0:19,4 +chr1 240178447 . C T 0 PASS DP=67;GPV=1;SPV=0.0055469;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:10,8:8,3:2,5 +chr1 240742610 . CTTTT C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr1 240919005 . G T 0 PASS DP=101;GPV=1;SPV=9.1325e-14;SS=2;SSC=130;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:19,46:9,18:10,28 +chr1 241017411 . G A 0 PASS DP=79;GPV=1;SPV=2.0643e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:21,30:8,11:13,19 +chr1 241068203 . C T 0 PASS DP=53;GPV=1;SPV=0.0020554;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,3:13,9 +chr1 241744410 . T C 0 PASS DP=90;GPV=1;SPV=0.0032559;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:46,12:19,5:27,7 +chr1 242207878 . TTATATA T 0 PASS DP=49;GPV=1;SPV=0.022676;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:8,5:13,9 +chr1 242337258 . T TCATGAGGCAGTAGATTGTATTTTAAAGATGAC 0 PASS DP=65;GPV=1;SPV=0.003144;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,13:7,10:18,3 +chr1 242490879 . A G 0 PASS DP=90;GPV=1;SPV=0.00025984;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:40,15:17,7:23,8 +chr1 243583193 . T C 0 PASS DP=39;GPV=1;SPV=0.073823;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,1:11,4 +chr1 245045757 . G A 0 PASS DP=91;GPV=1;SPV=0.10542;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:34,5:20,1:14,4 +chr1 245857516 . T TGCATAGGTCTGGTCCTGGATTCTCCCTCTGCTTC 0 PASS DP=81;GPV=1;SPV=0.034415;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,14:16,6:18,8 +chr1 246362764 . G C 0 PASS DP=172;GPV=1;SPV=0.023364;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:84,20:46,15:38,5 +chr1 246892301 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:2,2:8,2 +chr1 247219140 . T C 0 PASS DP=97;GPV=1;SPV=0.011658;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:16,9:27,4 +chr1 247852918 . CAGAGAGAGAGAGAGAG C 0 PASS DP=56;GPV=1;SPV=0.070707;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,5:2,2:1,3 +chr1 247907113 . TTTTTTC T 0 PASS DP=61;GPV=1;SPV=0.073271;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:5,1:27,4 +chr1 248168028 . G T 0 PASS DP=46;GPV=1;SPV=0.012992;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:8,3:9,7 +chr1 248306538 . CG C 0 PASS DP=32;GPV=1;SPV=0.046615;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:3,4:12,4 +chr1 248452271 . CA C 0 PASS DP=31;GPV=1;SPV=0.064856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:13,2:2,5 +chr1 248943908 . C G 0 PASS DP=170;GPV=1;SPV=0.0028471;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:76,24:42,12:34,12 +chr10 1265691 . C G 0 PASS DP=49;GPV=1;SPV=0.12934;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:10,3:16,1 +chr10 3818912 . T TC 0 PASS DP=37;GPV=1;SPV=0.001984;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,13:7,5:1,8 +chr10 4149533 . G C 0 PASS DP=126;GPV=1;SPV=0.027754;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:55,7:28,4:27,3 +chr10 6155205 . C CTTTTT 0 PASS DP=48;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,5:13,4:6,1 +chr10 6170702 . AGG A 0 PASS DP=62;GPV=1;SPV=0.12491;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,4:10,2:11,2 +chr10 6932014 . CA C 0 PASS DP=47;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,12:6,8:4,4 +chr10 7220830 . T C 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:12,1:17,5 +chr10 8026028 . T A 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:5,5:4,4 +chr10 8280630 . A T 0 PASS DP=67;GPV=1;SPV=0.015156;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:10,3:19,7 +chr10 8422085 . C CTTTCTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.19021;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,1:12,3 +chr10 8545427 . C T 0 PASS DP=37;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,4:2,1:4,3 +chr10 9358808 . C T 0 PASS DP=71;GPV=1;SPV=1.1265e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:9,11:7,6 +chr10 10296730 . C CTCTTTTT 0 PASS DP=17;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1 +chr10 14209718 . C CA 0 PASS DP=60;GPV=1;SPV=0.0030692;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,7:12,2 +chr10 15469418 . C G 0 PASS DP=82;GPV=1;SPV=0.0030239;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:24,3:12,6 +chr10 16841910 . C CAAA 0 PASS DP=41;GPV=1;SPV=0.30409;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,4:6,3:6,1 +chr10 18600978 . G A 0 PASS DP=26;GPV=1;SPV=0.25826;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:8,1:2,3 +chr10 19064769 . CA C 0 PASS DP=41;GPV=1;SPV=0.0086203;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:9,5:5,1 +chr10 19467802 . T A 0 PASS DP=72;GPV=1;SPV=0.071429;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:41:1,3:0,2:1,1 +chr10 19955074 . A ATT 0 PASS DP=48;GPV=1;SPV=0.031815;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:12,6:4,1 +chr10 21343903 . AAAAG A 0 PASS DP=29;GPV=1;SPV=0.14559;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:7,4:5,1 +chr10 21704329 . T TTCTC 0 PASS DP=38;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:10,2:8,3 +chr10 21881844 . T TA 0 PASS DP=44;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:11,6:5,2 +chr10 23457003 . T TGTGTGTGCGC 0 PASS DP=42;GPV=1;SPV=0.011437;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,6:6,3:6,3 +chr10 23818343 . TATA T 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,3:10,1 +chr10 24895253 . C CTTTTTT 0 PASS DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:1,2:2,1 +chr10 24972517 . A T 0 PASS DP=88;GPV=1;SPV=1.9991e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:10,4:16,11 +chr10 25639028 . ATTTC A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:6,2:17,2 +chr10 28836271 . T C 0 PASS DP=50;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,4:1,0:9,4 +chr10 29776765 . C T 0 PASS DP=37;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,5:3,1:14,4 +chr10 30410480 . A G 0 PASS DP=102;GPV=1;SPV=9.1412e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:23,9:13,6 +chr10 30890083 . CA C 0 PASS DP=38;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr10 32438069 . C G 0 PASS DP=81;GPV=1;SPV=9.6275e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:19,21:13,8:6,13 +chr10 33028330 . CTT C 0 PASS DP=43;GPV=1;SPV=0.12337;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:8,2:16,3 +chr10 33121193 . T C 0 PASS DP=81;GPV=1;SPV=4.2988e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:17,7:12,7 +chr10 33671715 . A ATATGAC 0 PASS DP=32;GPV=1;SPV=0.0099416;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,4:4,1 +chr10 33671725 . G A 0 PASS DP=25;GPV=1;SPV=0.0047431;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:0,4:5,1 +chr10 33671731 . A ATATATATATGAC 0 PASS DP=29;GPV=1;SPV=0.0072239;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:2,3:1,1 +chr10 34645186 . T A 0 PASS DP=75;GPV=1;SPV=0.019307;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:17,4:20,3 +chr10 35745310 . C T 0 PASS DP=86;GPV=1;SPV=0.001927;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:20,5:16,4 +chr10 36050368 . A T 0 PASS DP=75;GPV=1;SPV=0.0056445;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:18,3:17,6 +chr10 36322330 . G A 0 PASS DP=79;GPV=1;SPV=1.015e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:11,10:10,10 +chr10 36480667 . C T 0 PASS DP=62;GPV=1;SPV=0.013537;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:14,10:11,6 +chr10 37113363 . T C 0 PASS DP=109;GPV=1;SPV=0.014496;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:19,8:28,3 +chr10 38327263 . T TTC 0 PASS DP=42;GPV=1;SPV=0.0074752;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,9:4,4:2,5 +chr10 38496005 . C A 0 PASS DP=59;GPV=1;SPV=0.033228;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:13,2:15,4 +chr10 38496006 . C T 0 PASS DP=58;GPV=1;SPV=0.027512;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:11,6:13,3 +chr10 38576386 . AAATGG A 0 PASS DP=23;GPV=1;SPV=0.10784;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:5,3:2,1 +chr10 38651476 . CAT C 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:17,1:18,3 +chr10 38652470 . T G 0 PASS DP=83;GPV=1;SPV=0.04533;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:16,3:13,5 +chr10 38689754 . G A 0 PASS DP=164;GPV=1;SPV=0.00022978;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:76,13:42,6:34,7 +chr10 38923521 . T C 0 PASS DP=336;GPV=1;SPV=0.0033879;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:157,20:87,10:70,10 +chr10 39835327 . A T 0 PASS DP=294;GPV=1;SPV=0.041879;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:135,15:74,6:61,9 +chr10 40287592 . A G 0 PASS DP=61;GPV=1;SPV=0.029233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:6,3:23,3 +chr10 40300954 . G A 0 PASS DP=79;GPV=1;SPV=0.034849;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,1:22,3 +chr10 40691595 . A T 0 PASS DP=79;GPV=1;SPV=0.041896;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:17,6:15,5 +chr10 40761927 . A C 0 PASS DP=147;GPV=1;SPV=0.014577;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:69,9:27,1:42,8 +chr10 40857299 . C A 0 PASS DP=22;GPV=1;SPV=0.039341;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,0:4,4 +chr10 40884373 . G C 0 PASS DP=166;GPV=1;SPV=0.0030742;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:67,19:12,5:55,14 +chr10 40892303 . G A 0 PASS DP=588;GPV=1;SPV=0.025852;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:261,39:147,23:114,16 +chr10 40920706 . C G 0 PASS DP=41;GPV=1;SPV=0.06379;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:14,3:2,2:12,1 +chr10 40963788 . T C 0 PASS DP=50;GPV=1;SPV=0.054928;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:7,1:14,3 +chr10 40965940 . A G 0 PASS DP=71;GPV=1;SPV=0.0005505;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:17,9:9,1 +chr10 41104823 . G C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:22,4:1,0 +chr10 41494604 . C G 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:24,4:2,0 +chr10 41527518 . A C 0 PASS DP=53;GPV=1;SPV=0.059209;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:11,3:15,2 +chr10 41584168 . C T 0 PASS DP=669;GPV=1;SPV=0.022969;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:351:303,48:227,41:76,7 +chr10 41881947 . CGAGTGTAATT C 0 PASS DP=310;GPV=1;SPV=0.030017;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:144,20:112,14:32,6 +chr10 41882734 . T C 0 PASS DP=371;GPV=1;SPV=0.033617;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:208:176,32:93,21:83,11 +chr10 41891344 . C A 0 PASS DP=80;GPV=1;SPV=0.031173;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:21,4:15,1 +chr10 41892391 . A T 0 PASS DP=123;GPV=1;SPV=0.042405;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:54,7:29,2:25,5 +chr10 41896230 . G GGAATGGAATC 0 PASS DP=169;GPV=1;SPV=0.018345;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:77,9:46,5:31,4 +chr10 41900107 . A T 0 PASS DP=157;GPV=1;SPV=0.0011011;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:53,10:30,1:23,9 +chr10 41906114 . C CAATGG 0 PASS DP=102;GPV=1;SPV=0.026485;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,7:22,4:12,3 +chr10 41912903 . T A 0 PASS DP=251;GPV=1;SPV=0.031646;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:111,19:47,15:64,4 +chr10 41914068 . G A 0 PASS DP=203;GPV=1;SPV=0.0015108;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:84,29:39,17:45,12 +chr10 42080954 . C T 0 PASS DP=1854;GPV=1;SPV=0.0032918;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:979:878,99:59,15:819,84 +chr10 42130201 . C G 0 PASS DP=604;GPV=1;SPV=0.010879;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:328:286,42:114,11:172,31 +chr10 42152600 . GTATATC G 0 PASS DP=151;GPV=1;SPV=0.042771;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:61,16:24,3:37,13 +chr10 42182059 . G T 0 PASS DP=52;GPV=1;SPV=0.16534;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:23,2:3,1 +chr10 42213791 . T C 0 PASS DP=71;GPV=1;SPV=0.038396;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:17,1:4,6 +chr10 42213848 . A G 0 PASS DP=62;GPV=1;SPV=0.028463;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:14,1:5,4 +chr10 42281418 . A G 0 PASS DP=157;GPV=1;SPV=0.029327;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:65,18:29,3:36,15 +chr10 42299381 . T C 0 PASS DP=84;GPV=1;SPV=0.11288;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:32,4:20,2:12,2 +chr10 44878064 . T C 0 PASS DP=55;GPV=1;SPV=0.19205;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:15,5:9,2:6,3 +chr10 45391072 . CCACGG C 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:4,5:5,2 +chr10 45749836 . A AAAAAAAATATATAT 0 PASS DP=55;GPV=1;SPV=0.05321;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,8:15,1:10,7 +chr10 45823138 . C A 0 PASS DP=41;GPV=1;SPV=0.017469;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:6,3:5,5 +chr10 45889994 . C CA 0 PASS DP=35;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,2:5,5 +chr10 45890429 . T C 0 PASS DP=61;GPV=1;SPV=0.0035718;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:15,1:9,7 +chr10 46408881 . T G 0 PASS DP=129;GPV=1;SPV=0.0042791;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:33,3:26,5 +chr10 46660447 . T TA 0 PASS DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:15,4:0,0 +chr10 46768125 . G A 0 PASS DP=110;GPV=1;SPV=0.019877;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:25,10:18,3 +chr10 46935640 . A C 0 PASS DP=71;GPV=1;SPV=0.046112;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:23,7:8,3 +chr10 46979530 . A G 0 PASS DP=74;GPV=1;SPV=0.046521;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:14,3:22,2 +chr10 47235996 . T A 0 PASS DP=81;GPV=1;SPV=5.3434e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:13,14:14,3 +chr10 47938554 . A G 0 PASS DP=49;GPV=1;SPV=0.034525;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:17,4:1,0 +chr10 47987548 . G A 0 PASS DP=69;GPV=1;SPV=0.042061;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:23,4:15,3 +chr10 48080905 . A C 0 PASS DP=94;GPV=1;SPV=0.013329;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:20,6:21,3 +chr10 48928398 . T G 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:12,2:16,2 +chr10 49891621 . ATATTTT A 0 PASS DP=31;GPV=1;SPV=0.047472;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,4:2,2:2,2 +chr10 49962894 . C CT 0 PASS DP=50;GPV=1;SPV=0.046334;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:11,5:14,1 +chr10 50109548 . G T 0 PASS DP=87;GPV=1;SPV=0.03763;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:19,8:15,2 +chr10 51464890 . CA C 0 PASS DP=49;GPV=1;SPV=0.014937;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:11,8:8,2 +chr10 54853422 . T C 0 PASS DP=65;GPV=1;SPV=0.011736;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,6:19,3:4,3 +chr10 55235906 . C CA 0 PASS DP=45;GPV=1;SPV=0.017499;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,8:3,7:5,1 +chr10 55602627 . C G 0 PASS DP=83;GPV=1;SPV=0.072974;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:45,5:16,1:29,4 +chr10 55609015 . T C 0 PASS DP=72;GPV=1;SPV=0.01056;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:18,2:13,9 +chr10 55830519 . GA G 0 PASS DP=54;GPV=1;SPV=0.0029888;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:15,5:8,6 +chr10 55953998 . CA C 0 PASS DP=47;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:17,2:2,2 +chr10 56858096 . G T 0 PASS DP=85;GPV=1;SPV=6.9536e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:15,10:12,10 +chr10 57420264 . CTTTT C 0 PASS DP=31;GPV=1;SPV=0.040724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,4:3,1 +chr10 58009272 . CAAAA C 0 PASS DP=44;GPV=1;SPV=0.0073773;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr10 59037349 . A C 0 PASS DP=95;GPV=1;SPV=0.00022306;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:19,6:17,5 +chr10 59681738 . TATG T 0 PASS DP=24;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:5,2:5,2 +chr10 60158685 . C CTTTTTTTTTTTT 0 PASS DP=61;GPV=1;SPV=0.014013;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:9,7:8,1 +chr10 61263235 . C T 0 PASS DP=72;GPV=1;SPV=5.3195e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,18:8,14:8,4 +chr10 63606263 . T TTTTCTTTCTTTCTTTTTC 0 PASS DP=54;GPV=1;SPV=0.028555;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:6,3:12,5 +chr10 63861106 . C CGCGTGTGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.0057417;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:5,1:3,6 +chr10 65087396 . TAC T 0 PASS DP=37;GPV=1;SPV=0.37283;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,4:2,1:17,3 +chr10 67833444 . T C 0 PASS DP=72;GPV=1;SPV=0.060665;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,5:10,4:15,1 +chr10 68059870 . T C 0 PASS DP=51;GPV=1;SPV=0.014395;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:12,8:8,2 +chr10 68923937 . CTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:2,4:8,1 +chr10 72283779 . CAA C 0 PASS DP=42;GPV=1;SPV=0.016233;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:4,7:8,2 +chr10 72454784 . A C 0 PASS DP=57;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:1,1:2,1 +chr10 73250711 . T C 0 PASS DP=75;GPV=1;SPV=1.1858e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:8,7:14,11 +chr10 73756899 . AT A 0 PASS DP=36;GPV=1;SPV=0.024497;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,6:5,1:8,5 +chr10 73833909 . G GT 0 PASS DP=33;GPV=1;SPV=0.2419;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,4:8,2:6,2 +chr10 74128124 . AGGAAAAG A 0 PASS DP=34;GPV=1;SPV=0.22807;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,4:3,2:8,2 +chr10 74201684 . C G 0 PASS DP=65;GPV=1;SPV=0.035087;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,6:12,2:14,4 +chr10 74760868 . C CT 0 PASS DP=31;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,7:3,1 +chr10 75856489 . C CAAGT 0 PASS DP=83;GPV=1;SPV=0.00014322;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:12,6:17,5 +chr10 76084364 . ATTTT A 0 PASS DP=35;GPV=1;SPV=0.010792;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr10 76379161 . T TTGTG 0 PASS DP=49;GPV=1;SPV=0.0068919;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:8,2:12,6 +chr10 79183824 . TCC T 0 PASS DP=75;GPV=1;SPV=0.0010762;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:14,5:12,3 +chr10 81167688 . C CT 0 PASS DP=86;GPV=1;SPV=0.0051557;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,10:11,7:14,3 +chr10 81693963 . GAT G 0 PASS DP=25;GPV=1;SPV=0.016957;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,2:6,4 +chr10 82031071 . C A 0 PASS DP=82;GPV=1;SPV=2.2667e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:14,10:9,9 +chr10 83081279 . A G 0 PASS DP=93;GPV=1;SPV=4.0149e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:10,7:19,12 +chr10 84007300 . CT C 0 PASS DP=34;GPV=1;SPV=0.044477;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:9,2:3,2 +chr10 84018271 . A T 0 PASS DP=70;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:14,4:7,2:7,2 +chr10 84884296 . T A 0 PASS DP=74;GPV=1;SPV=0.0011799;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:12,5:18,5 +chr10 85854248 . G A 0 PASS DP=93;GPV=1;SPV=0.00061273;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:22,5:17,6 +chr10 86939833 . G T 0 PASS DP=63;GPV=1;SPV=0.053518;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,7:12,3:13,4 +chr10 87354692 . C T 0 PASS DP=104;GPV=1;SPV=0.012964;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:20,5:22,11 +chr10 87389196 . A G 0 PASS DP=100;GPV=1;SPV=0.0076335;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:24,7:24,1 +chr10 87390198 . A G 0 PASS DP=103;GPV=1;SPV=0.0043761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,8:15,6:31,2 +chr10 87418174 . TTATA T 0 PASS DP=79;GPV=1;SPV=0.013809;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:17,5:17,1 +chr10 87523518 . T A 0 PASS DP=71;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:3,3:2,1:1,2 +chr10 87701339 . T C 0 PASS DP=65;GPV=1;SPV=0.10738;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,4:18,2:13,2 +chr10 89576802 . G A 0 PASS DP=80;GPV=1;SPV=4.9339e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:19,24:10,12:9,12 +chr10 90976006 . A AAAAAAAAAAAAG 0 PASS DP=79;GPV=1;SPV=0.0010173;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,17:12,11:11,6 +chr10 92199392 . A C 0 PASS DP=59;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:1,1:3,1 +chr10 92948573 . C CACTACTACTACTACT 0 PASS DP=58;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:16,5:14,3:2,2 +chr10 94883510 . C CA 0 PASS DP=72;GPV=1;SPV=0.00064847;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:17,8:8,5 +chr10 96817689 . CT C 0 PASS DP=27;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:2,4:4,3 +chr10 97657811 . ACTGTCACCACCATCCATCTCCAGAGCTCTTTTTGTTGTTGTTGAGACCGAGTCTTGCT A 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,3:11,1 +chr10 98386546 . C CTTTT 0 PASS DP=53;GPV=1;SPV=0.00024277;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:6,10:6,4 +chr10 103265049 . CAAAAAAAAAAAAAAA C 0 PASS DP=39;GPV=1;SPV=0.01174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,10:8,5:3,5 +chr10 103278903 . G GCACACACACACA 0 PASS DP=53;GPV=1;SPV=0.047515;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:13,9:7,1 +chr10 104534877 . C T 0 PASS DP=35;GPV=1;SPV=0.068436;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:11,3:3,2 +chr10 105771010 . G T 0 PASS DP=88;GPV=1;SPV=5.8491e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:8,10:11,5 +chr10 106899591 . CT C 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:8,4:6,2 +chr10 109059631 . G A 0 PASS DP=82;GPV=1;SPV=0.0001197;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:17,3:11,8 +chr10 109208025 . AT A 0 PASS DP=55;GPV=1;SPV=0.015273;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chr10 111119516 . GCT G 0 PASS DP=55;GPV=1;SPV=0.032855;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:15,9:6,1 +chr10 112966194 . A T 0 PASS DP=34;GPV=1;SPV=0.023376;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:3,4:8,4 +chr10 113803008 . C T 0 PASS DP=65;GPV=1;SPV=0.1538;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,4:10,1:11,3 +chr10 113948684 . TATATATATATATATATATATACACAC T 0 PASS DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:3,3:0,2 +chr10 114066524 . C A 0 PASS DP=82;GPV=1;SPV=0.0021577;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:15,3:17,5 +chr10 114202173 . G A 0 PASS DP=89;GPV=1;SPV=3.8111e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:11,12:20,6 +chr10 115383511 . G A 0 PASS DP=77;GPV=1;SPV=0.0045408;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:13,5:20,3 +chr10 118949359 . C CT 0 PASS DP=27;GPV=1;SPV=0.020734;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:2,3:1,1 +chr10 119411842 . CTT C 0 PASS DP=21;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:2,1:3,1 +chr10 119955275 . T A 0 PASS DP=49;GPV=1;SPV=0.0003337;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,10:3,8:5,2 +chr10 120368900 . C T 0 PASS DP=79;GPV=1;SPV=3.0775e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:11,11:15,2 +chr10 121636873 . C CTTTT 0 PASS DP=53;GPV=1;SPV=0.022531;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,14:15,10:8,4 +chr10 121667273 . G T 0 PASS DP=62;GPV=1;SPV=0.088975;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:19,1:15,4 +chr10 122423110 . A T 0 PASS DP=70;GPV=1;SPV=0.026993;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:15,9:8,3:7,6 +chr10 122681334 . C T 0 PASS DP=30;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,2:3,4 +chr10 123181855 . A AT 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,2:4,4 +chr10 123653723 . AG A 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,4:5,5 +chr10 123738268 . T G 0 PASS DP=71;GPV=1;SPV=0.065402;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:20,4:20,2 +chr10 124158737 . T G 0 PASS DP=75;GPV=1;SPV=0.033359;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:14,3:20,2 +chr10 125892689 . G A 0 PASS DP=171;GPV=1;SPV=0.027462;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:75,15:23,2:52,13 +chr10 127045200 . T TA 0 PASS DP=28;GPV=1;SPV=0.008238;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:7,6:1,2 +chr10 127093202 . C CTTTCTTTCTTTCTTTCTTTCTTTG 0 PASS DP=28;GPV=1;SPV=0.088889;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:1,1:11,3 +chr10 129841050 . C T 0 PASS DP=80;GPV=1;SPV=0.0006809;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:15,7:16,3 +chr10 130530431 . C CT 0 PASS DP=55;GPV=1;SPV=0.002853;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:17,6:7,6 +chr10 131675469 . C T 0 PASS DP=95;GPV=1;SPV=2.2497e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:15,10:16,12 +chr10 133423970 . A AGGAGCGCCGCGGTG 0 PASS DP=67;GPV=1;SPV=0.0019513;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:16,6:4,9 +chr10 133464329 . G GC 0 PASS DP=70;GPV=1;SPV=0.050579;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:18,3:12,1 +chr11 180483 . A C 0 PASS DP=49;GPV=1;SPV=0.019748;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:9,9:8,2 +chr11 287677 . T C 0 PASS DP=40;GPV=1;SPV=0.053015;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:13,1:3,3 +chr11 1087343 . G A 0 PASS DP=34;GPV=1;SPV=0.072149;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:4,3:9,2 +chr11 1116392 . CGGGCTGTTCCCTGAGTGTGCTGGGCT C 0 PASS DP=78;GPV=1;SPV=0.030923;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:23,4:12,4 +chr11 1417831 . G T 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr11 1597972 . G A 0 PASS DP=38;GPV=1;SPV=0.1671;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,5:8,4:10,1 +chr11 3111965 . GTGTGCATATGTGTGCGCGCA G 0 PASS DP=65;GPV=1;SPV=0.012858;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:10,8:16,1 +chr11 3782570 . A AT 0 PASS DP=58;GPV=1;SPV=0.0045225;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,13:17,8:5,5 +chr11 3920129 . T A 0 PASS DP=86;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:6,2:2,1:4,1 +chr11 4045762 . C CT 0 PASS DP=31;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,2:3,2 +chr11 4327773 . C T 0 PASS DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:19,6:8,10 +chr11 4895219 . AAATTCTTTATATACATCATTAC A 0 PASS DP=84;GPV=1;SPV=0.0033007;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:18,12:14,7 +chr11 4898833 . G C 0 PASS DP=62;GPV=1;SPV=0.027191;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:9,6:4,2:5,4 +chr11 5838847 . C A 0 PASS DP=80;GPV=1;SPV=1.3989e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:11,6:12,10 +chr11 5870589 . ACC A 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:15,2:6,3 +chr11 6301244 . C T 0 PASS DP=94;GPV=1;SPV=7.7872e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:36,19:19,8:17,11 +chr11 6578652 . G A 0 PASS DP=66;GPV=1;SPV=0.056165;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:14,1:19,4 +chr11 8314484 . T G 0 PASS DP=60;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,4:8,3:3,1 +chr11 8462402 . C CAT 0 PASS DP=50;GPV=1;SPV=0.010978;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:9,4:6,4 +chr11 9375041 . C CAA 0 PASS DP=45;GPV=1;SPV=0.0204;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:11,8:6,2 +chr11 10504138 . C T 0 PASS DP=67;GPV=1;SPV=0.040341;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,4:14,2 +chr11 10731941 . A ATG 0 PASS DP=50;GPV=1;SPV=0.038709;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:16,4:7,2 +chr11 11463225 . C G 0 PASS DP=69;GPV=1;SPV=0.0095002;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:10,5:15,3 +chr11 13363127 . CATATATAT C 0 PASS DP=30;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,10:2,6:5,4 +chr11 13534505 . G A 0 PASS DP=97;GPV=1;SPV=1.1462e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:30,21:12,13:18,8 +chr11 14841349 . A C 0 PASS DP=53;GPV=1;SPV=0.0025048;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:7,2:12,6 +chr11 15651738 . C CTT 0 PASS DP=40;GPV=1;SPV=0.0067861;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:4,1:7,8 +chr11 15998454 . TG T 0 PASS DP=54;GPV=1;SPV=0.042668;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,5:9,2 +chr11 16196830 . C T 0 PASS DP=28;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:8,2:4,2 +chr11 16994530 . G A 0 PASS DP=80;GPV=1;SPV=3.8991e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,20:13,10:7,10 +chr11 18622101 . A AAAAAAAAAAAC 0 PASS DP=23;GPV=1;SPV=0.11905;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:2,1:0,3 +chr11 23317106 . C A 0 PASS DP=43;GPV=1;SPV=0.019285;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,3:9,1 +chr11 24328584 . T C 0 PASS DP=90;GPV=1;SPV=0.034902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:23,2:19,3 +chr11 24649978 . C G 0 PASS DP=69;GPV=1;SPV=0.023995;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:15,3:14,5 +chr11 24918965 . T C 0 PASS DP=178;GPV=1;SPV=0.0072049;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:87,14:41,3:46,11 +chr11 27496001 . A AAC 0 PASS DP=66;GPV=1;SPV=0.0006722;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:14,5:12,7 +chr11 28310962 . GTGGGT G 0 PASS DP=45;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:18,4:0,0 +chr11 30103519 . G A 0 PASS DP=41;GPV=1;SPV=0.00031821;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,10:6,8:0,2 +chr11 31142102 . G A 0 PASS DP=86;GPV=1;SPV=0.0058719;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:19,3:13,3 +chr11 31204428 . GA G 0 PASS DP=63;GPV=1;SPV=0.00013297;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:11,6:10,6 +chr11 32201444 . T C 0 PASS DP=64;GPV=1;SPV=7.7194e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:10,6:13,10 +chr11 35894837 . C CTT 0 PASS DP=18;GPV=1;SPV=0.051282;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:2,3:2,1 +chr11 36054840 . A G 0 PASS DP=31;GPV=1;SPV=0.033054;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,7:3,2:6,5 +chr11 37881192 . TA T 0 PASS DP=52;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:1,2:1,1:0,1 +chr11 39220874 . AGAAG A 0 PASS DP=27;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,5:3,3:3,2 +chr11 40665325 . A T 0 PASS DP=21;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,3:0,2:0,1 +chr11 40851180 . GA G 0 PASS DP=86;GPV=1;SPV=0.00070074;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:14,2:20,8 +chr11 41182848 . TAA T 0 PASS DP=75;GPV=1;SPV=0.0038457;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:21,12:11,7:10,5 +chr11 41460454 . C T 0 PASS DP=62;GPV=1;SPV=1.1624e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:8,7:11,10 +chr11 41655087 . T TCTC 0 PASS DP=29;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,5:1,1:9,4 +chr11 43619164 . G GAT 0 PASS DP=36;GPV=1;SPV=0.0041629;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,3:4,6 +chr11 43619215 . A AAT 0 PASS DP=37;GPV=1;SPV=0.016422;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:9,3:7,6 +chr11 44379144 . G A 0 PASS DP=26;GPV=1;SPV=0.053755;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,4:4,2 +chr11 46271364 . G A 0 PASS DP=76;GPV=1;SPV=5.9715e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:10,6:15,6 +chr11 47046665 . T C 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,4:9,2 +chr11 48500539 . C G 0 PASS DP=88;GPV=1;SPV=7.0452e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:28,20:17,14:11,6 +chr11 49002488 . T C 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,2:15,2 +chr11 49926902 . A G 0 PASS DP=86;GPV=1;SPV=0.00010628;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:21,7:13,7 +chr11 50023502 . C A 0 PASS DP=75;GPV=1;SPV=0.036467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:18,1:14,6 +chr11 51572510 . G T 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:3,0:30,4 +chr11 51664424 . G A 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:5,1:21,3 +chr11 52107622 . T C 0 PASS DP=201;GPV=1;SPV=0.029527;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:95,14:37,8:58,6 +chr11 52129259 . C T 0 PASS DP=70;GPV=1;SPV=0.033358;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:13,1:21,9 +chr11 53175444 . A T 0 PASS DP=36;GPV=1;SPV=0.048962;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:4,2:7,3 +chr11 53602042 . A G 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr11 54234630 . G A 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr11 54270934 . C A 0 PASS DP=25;GPV=1;SPV=0.014907;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr11 54334166 . A C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr11 54382388 . G T 0 PASS DP=106;GPV=1;SPV=0.043161;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:49,7:38,4:11,3 +chr11 54382389 . G T 0 PASS DP=104;GPV=1;SPV=0.038418;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:36,4:11,3 +chr11 54392352 . C T 0 PASS DP=29;GPV=1;SPV=0.074501;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:11,5:3,2 +chr11 54416246 . A T 0 PASS DP=89;GPV=1;SPV=0.045941;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:5,2:39,3 +chr11 55873506 . C A 0 PASS DP=121;GPV=1;SPV=3.0487e-10;SS=2;SSC=95;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:38,34:20,23:18,11 +chr11 56157088 . A T 0 PASS DP=69;GPV=1;SPV=1.5006e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:7,10:14,4 +chr11 56267744 . A G 0 PASS DP=37;GPV=1;SPV=0.00092696;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,8:5,6:3,2 +chr11 57185270 . CTTTT C 0 PASS DP=34;GPV=1;SPV=0.0059696;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,8:5,7:3,1 +chr11 59554905 . A AAG 0 PASS DP=39;GPV=1;SPV=0.064336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:12,6:5,1 +chr11 59554927 . GA G 0 PASS DP=42;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:17,5:4,1 +chr11 60832412 . T A 0 PASS DP=66;GPV=1;SPV=0.00075779;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:9,7:14,2 +chr11 64022867 . A AT 0 PASS DP=39;GPV=1;SPV=0.069881;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:4,4:7,2 +chr11 64196395 . C CA 0 PASS DP=49;GPV=1;SPV=0.022431;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,8:16,7:6,1 +chr11 64310536 . GT G 0 PASS DP=34;GPV=1;SPV=0.15773;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:7,3:11,1 +chr11 65734436 . C CA 0 PASS DP=33;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,7:6,5:2,2 +chr11 66311088 . AC A 0 PASS DP=76;GPV=1;SPV=0.21429;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:2,2:2,2:0,0 +chr11 68219436 . A G 0 PASS DP=47;GPV=1;SPV=0.13473;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,4:10,1:6,3 +chr11 69274380 . C G 0 PASS DP=83;GPV=1;SPV=6.8415e-10;SS=2;SSC=91;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:19,28:9,16:10,12 +chr11 71168031 . G C 0 PASS DP=47;GPV=1;SPV=0.038682;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:14,7:6,2 +chr11 72201585 . T TAC 0 PASS DP=41;GPV=1;SPV=0.14763;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3 +chr11 73253497 . C CATAT 0 PASS DP=29;GPV=1;SPV=0.0057971;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,6:5,5:2,1 +chr11 75757189 . AAAAG A 0 PASS DP=67;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,9:8,4:10,5 +chr11 77314398 . A ATATATATATATAT 0 PASS DP=20;GPV=1;SPV=0.10909;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,2:0,0:2,2 +chr11 79643065 . GGGAA G 0 PASS DP=32;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,4:3,3 +chr11 79696275 . C CATAT 0 PASS DP=54;GPV=1;SPV=0.014848;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:12,5:12,2 +chr11 83148729 . G A 0 PASS DP=76;GPV=1;SPV=2.3326e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:14,7:10,6 +chr11 84313641 . A AAAAGAAAGAAAGAAAGAAAGAAAGAAAG 0 PASS DP=28;GPV=1;SPV=0.010101;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:0,4:0,3:0,1 +chr11 84483430 . C CA 0 PASS DP=48;GPV=1;SPV=0.042122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:8,5:8,3 +chr11 84990342 . G A 0 PASS DP=70;GPV=1;SPV=0.0019129;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:13,4:15,5 +chr11 85232357 . C T 0 PASS DP=92;GPV=1;SPV=2.1719e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:27,25:9,9:18,16 +chr11 85630075 . C T 0 PASS DP=80;GPV=1;SPV=4.9752e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:10,7:9,11 +chr11 85816915 . C CAAAA 0 PASS DP=40;GPV=1;SPV=0.014934;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:6,5:3,2 +chr11 86110351 . T C 0 PASS DP=51;GPV=1;SPV=0.047306;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:10,8:14,3 +chr11 86319242 . A ATTTTTTTT 0 PASS DP=28;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:0,6:6,3 +chr11 86328929 . C T 0 PASS DP=53;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:1,2:1,1:0,1 +chr11 87080165 . A AGT 0 PASS DP=43;GPV=1;SPV=0.00012649;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:3,7:8,7 +chr11 87675968 . A AT 0 PASS DP=83;GPV=1;SPV=3.3064e-06;SS=2;SSC=54;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:11,9:14,6 +chr11 88928484 . GTATATATGTA G 0 PASS DP=65;GPV=1;SPV=0.07299;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,4:9,2:21,2 +chr11 89751342 . G GACTA 0 PASS DP=49;GPV=1;SPV=0.045385;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,3:8,4 +chr11 91053193 . G A 0 PASS DP=62;GPV=1;SPV=0.03148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,9:7,4:9,5 +chr11 91525961 . AATT A 0 PASS DP=66;GPV=1;SPV=0.056777;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,1:15,3 +chr11 92478948 . C CTTTCT 0 PASS DP=52;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:4,5:16,3 +chr11 92754700 . CA C 0 PASS DP=26;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr11 96522974 . C A 0 PASS DP=29;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,2:1,1:6,1 +chr11 96585172 . AT A 0 PASS DP=41;GPV=1;SPV=0.059099;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr11 96800198 . C T 0 PASS DP=72;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:40:0,2:0,1:0,1 +chr11 98636046 . AT A 0 PASS DP=89;GPV=1;SPV=5.3143e-07;SS=2;SSC=62;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:30,23:21,11:9,12 +chr11 104119230 . T C 0 PASS DP=19;GPV=1;SPV=0.049536;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:0,4:4,1 +chr11 105172422 . C T 0 PASS DP=38;GPV=1;SPV=0.017391;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,7:2,3:7,4 +chr11 106272580 . ATATAT A 0 PASS DP=51;GPV=1;SPV=0.050554;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:16,2:8,3 +chr11 106272616 . T C 0 PASS DP=56;GPV=1;SPV=0.047988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,5:9,2:12,3 +chr11 108241742 . C T 0 PASS DP=32;GPV=1;SPV=0.0037594;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:3,8:2,3:1,5 +chr11 110215369 . T A 0 PASS DP=57;GPV=1;SPV=0.044583;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,7:4,3:10,4 +chr11 112084799 . C CTTT 0 PASS DP=46;GPV=1;SPV=0.016961;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,9:8,4:8,5 +chr11 112095884 . G T 0 PASS DP=49;GPV=1;SPV=0.050152;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,3:15,1 +chr11 112273033 . TCTTTCCTTCTTC T 0 PASS DP=58;GPV=1;SPV=0.0094722;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,1:13,7 +chr11 113894392 . C CAAAAAAAAAA 0 PASS DP=45;GPV=1;SPV=0.020274;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:10,8:7,1 +chr11 115134000 . A G 0 PASS DP=69;GPV=1;SPV=0.02121;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:14,9:6,2:8,7 +chr11 115257841 . GCAT G 0 PASS DP=85;GPV=1;SPV=1.3324e-05;SS=2;SSC=48;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,14:15,7:12,7 +chr11 116818336 . TA T 0 PASS DP=52;GPV=1;SPV=0.036166;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:12,4:13,2 +chr11 117329839 . C CT 0 PASS DP=44;GPV=1;SPV=0.012248;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:13,4:6,5 +chr11 117769222 . TTGTATATATTATATATTTTATATA T 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:3,3:6,1 +chr11 120943107 . T TACACAC 0 PASS DP=51;GPV=1;SPV=0.041917;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,9:7,6:5,3 +chr11 122167018 . C CAT 0 PASS DP=37;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:6,11:3,8:3,3 +chr11 123318282 . A T 0 PASS DP=65;GPV=1;SPV=0.0395;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:21,5:12,1 +chr11 123704349 . C T 0 PASS DP=79;GPV=1;SPV=1.6295e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:10,8:13,4 +chr11 124317257 . TTG T 0 PASS DP=59;GPV=1;SPV=0.0084125;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,11:10,7:7,4 +chr11 125401768 . T A 0 PASS DP=97;GPV=1;SPV=0.026556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:52,7:16,5:36,2 +chr11 125665869 . CT C 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,2:7,4 +chr11 126131217 . A ATGTGTGTGTGTGTG 0 PASS DP=44;GPV=1;SPV=0.025685;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:5,5:9,4 +chr11 126683357 . A T 0 PASS DP=72;GPV=1;SPV=1.6465e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:11,9:11,11 +chr11 127323554 . C CA 0 PASS DP=46;GPV=1;SPV=0.10283;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,7:9,5:8,2 +chr11 127799896 . TTG T 0 PASS DP=61;GPV=1;SPV=0.01106;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,2:5,7 +chr11 129095191 . C T 0 PASS DP=87;GPV=1;SPV=1.0506e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:15,10:8,8 +chr11 129564218 . T C 0 PASS DP=57;GPV=1;SPV=0.019156;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:13,4:9,4 +chr11 130090969 . C T 0 PASS DP=69;GPV=1;SPV=0.076397;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:16,1:17,3 +chr11 130294538 . CA C 0 PASS DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:20,4:2,0 +chr11 130590053 . A G 0 PASS DP=54;GPV=1;SPV=0.032575;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,2:12,5 +chr11 131003590 . GTGTTTTTTTTTT G 0 PASS DP=19;GPV=1;SPV=0.028846;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,5:2,4:2,1 +chr11 131265322 . GAT G 0 PASS DP=45;GPV=1;SPV=0.034789;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:9,3:10,2 +chr11 131265436 . C A 0 PASS DP=33;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:8,3:8,3 +chr11 131577151 . A G 0 PASS DP=93;GPV=1;SPV=3.768e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:13,8:19,9 +chr11 131680400 . C T 0 PASS DP=45;GPV=1;SPV=0.0972;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:10,4:14,1 +chr11 133766032 . T C 0 PASS DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:19,7:12,10 +chr11 134284924 . CT C 0 PASS DP=35;GPV=1;SPV=0.070652;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,9:6,6:4,3 +chr11 134840333 . T C 0 PASS DP=56;GPV=1;SPV=0.11818;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:25,3:13,2:12,1 +chr12 44285 . T C 0 PASS DP=100;GPV=1;SPV=0.042124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:21,1:17,6 +chr12 748212 . A T 0 PASS DP=30;GPV=1;SPV=0.1866;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:4,1:7,3 +chr12 4874098 . A G 0 PASS DP=70;GPV=1;SPV=0.077778;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:11,4:5,2:6,2 +chr12 5489833 . G T 0 PASS DP=91;GPV=1;SPV=1.9282e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:14,12:18,8 +chr12 9284447 . C T 0 PASS DP=105;GPV=1;SPV=0.017823;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:48,12:22,6:26,6 +chr12 9308117 . C T 0 PASS DP=101;GPV=1;SPV=0.016746;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:24,1:22,8 +chr12 9607334 . TC T 0 PASS DP=47;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:8,2:13,4 +chr12 9869858 . CAA C 0 PASS DP=72;GPV=1;SPV=0.033575;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,1:17,5 +chr12 11938175 . T C 0 PASS DP=40;GPV=1;SPV=0.0054163;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,1:5,3 +chr12 13016392 . C CT 0 PASS DP=47;GPV=1;SPV=0.016493;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:12,5:7,1 +chr12 13445435 . C T 0 PASS DP=73;GPV=1;SPV=1.6036e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:19,20:9,10:10,10 +chr12 13776177 . C G 0 PASS DP=89;GPV=1;SPV=1.5071e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:25,25:9,12:16,13 +chr12 14235266 . C T 0 PASS DP=97;GPV=1;SPV=2.606e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:15,8:18,9 +chr12 14323950 . G C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,1:0,2 +chr12 14481935 . G A 0 PASS DP=70;GPV=1;SPV=0.044629;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1 +chr12 17161030 . T A 0 PASS DP=66;GPV=1;SPV=0.00029978;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:13,7:13,7 +chr12 17237002 . T C 0 PASS DP=44;GPV=1;SPV=0.11628;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:14,1:5,2 +chr12 19280036 . GT G 0 PASS DP=34;GPV=1;SPV=0.028921;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,5:4,1 +chr12 19896768 . T C 0 PASS DP=57;GPV=1;SPV=0.04058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:14,2:12,3 +chr12 21555502 . T G 0 PASS DP=71;GPV=1;SPV=2.5408e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:22,13:11,7:11,6 +chr12 22303848 . A C 0 PASS DP=68;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:7,2:5,1:2,1 +chr12 22895817 . T A 0 PASS DP=79;GPV=1;SPV=2.1151e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:13,8:13,12 +chr12 26617691 . G A 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,3:1,1 +chr12 30915287 . C T 0 PASS DP=115;GPV=1;SPV=0.014385;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:52,6:25,3:27,3 +chr12 31685810 . AG A 0 PASS DP=33;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:1,4:12,1 +chr12 31685815 . G A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,3:4,1 +chr12 32061587 . CTATATATATATA C 0 PASS DP=24;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:2,3:5,1 +chr12 32148032 . C A 0 PASS DP=77;GPV=1;SPV=0.0013413;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,4:14,6 +chr12 33153456 . C A 0 PASS DP=71;GPV=1;SPV=0.0021888;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:13,3:16,6 +chr12 33475345 . C T 0 PASS DP=76;GPV=1;SPV=6.7478e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:7,4:13,12 +chr12 34836788 . T A 0 PASS DP=41;GPV=1;SPV=0.011343;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:12,7:2,3 +chr12 34915929 . T A 0 PASS DP=373;GPV=1;SPV=0.012968;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:169,21:150,20:19,1 +chr12 35245095 . G A 0 PASS DP=149;GPV=1;SPV=0.00069823;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:68,15:38,10:30,5 +chr12 36205455 . G C 0 PASS DP=364;GPV=1;SPV=0.024344;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:204:181,23:118,5:63,18 +chr12 36239917 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr12 36247818 . A C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr12 36381030 . A T 0 PASS DP=45;GPV=1;SPV=0.039138;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:11,4:8,1 +chr12 38468208 . G A 0 PASS DP=75;GPV=1;SPV=4.4106e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:13,6:10,10 +chr12 40113195 . A C 0 PASS DP=78;GPV=1;SPV=5.2636e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:15,7:14,8 +chr12 40602940 . A G 0 PASS DP=30;GPV=1;SPV=0.092308;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,4:2,2:3,2 +chr12 40760042 . C A 0 PASS DP=51;GPV=1;SPV=0.0086626;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1 +chr12 41458994 . TGAGGAATTAGGTTTGAGATCAGAGTTCAAAG T 0 PASS DP=52;GPV=1;SPV=0.0047364;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,7:14,4 +chr12 41673678 . T C 0 PASS DP=55;GPV=1;SPV=0.0096038;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:16,2:5,8 +chr12 43161497 . G GTTTTT 0 PASS DP=46;GPV=1;SPV=0.032647;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,10:4,7:4,3 +chr12 44447451 . TA T 0 PASS DP=85;GPV=1;SPV=0.020567;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:21,3:21,8 +chr12 44862859 . G C 0 PASS DP=71;GPV=1;SPV=0.00013315;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:14,12:15,7 +chr12 45554574 . A G 0 PASS DP=41;GPV=1;SPV=0.056718;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,3:14,2 +chr12 45561590 . TTTCC T 0 PASS DP=55;GPV=1;SPV=0.033476;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:13,8:6,4:7,4 +chr12 46089097 . C CTT 0 PASS DP=40;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:6,1:11,4 +chr12 47232905 . TTTTA T 0 PASS DP=70;GPV=1;SPV=0.002519;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:7,12:15,3 +chr12 47634583 . T C 0 PASS DP=16;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,2:2,1:1,1 +chr12 48186521 . A G 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,2:8,2 +chr12 48186530 . TGTATATGTGC T 0 PASS DP=65;GPV=1;SPV=0.10903;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,2:21,2 +chr12 48207769 . C CT 0 PASS DP=29;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:1,3:2,3 +chr12 48540100 . C CA 0 PASS DP=36;GPV=1;SPV=0.045822;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,9:9,8:2,1 +chr12 48635402 . G A 0 PASS DP=44;GPV=1;SPV=0.038921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,5:0,2:7,3 +chr12 49004813 . CTGTG C 0 PASS DP=60;GPV=1;SPV=0.00012936;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,17:8,9:9,8 +chr12 49880551 . CGT C 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,1:10,3 +chr12 50754334 . T TC 0 PASS DP=55;GPV=1;SPV=0.0042405;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:10,8:7,5 +chr12 50872860 . AT A 0 PASS DP=45;GPV=1;SPV=0.080441;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:14,1:9,4 +chr12 50872864 . C CG 0 PASS DP=52;GPV=1;SPV=0.031932;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:17,1:9,6 +chr12 50949526 . CT C 0 PASS DP=23;GPV=1;SPV=0.029748;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,5:4,1 +chr12 52745107 . G A 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,2:11,2 +chr12 52938136 . C CTATA 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1 +chr12 55100164 . C A 0 PASS DP=47;GPV=1;SPV=0.013049;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:4,6:11,5 +chr12 55411261 . A G 0 PASS DP=55;GPV=1;SPV=0.1253;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:20,3:12,2 +chr12 56363209 . A T 0 PASS DP=57;GPV=1;SPV=0.055746;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,4:17,1:7,3 +chr12 58373220 . C A 0 PASS DP=97;GPV=1;SPV=3.9106e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:11,8:17,13 +chr12 59013656 . C T 0 PASS DP=92;GPV=1;SPV=6.2842e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:29,26:8,19:21,7 +chr12 59486352 . G GTATA 0 PASS DP=37;GPV=1;SPV=0.027005;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,4:7,6 +chr12 60694394 . C T 0 PASS DP=78;GPV=1;SPV=2.4229e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,16:18,4:10,12 +chr12 62507315 . C CTT 0 PASS DP=60;GPV=1;SPV=0.020181;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:7,3:14,6 +chr12 62939616 . CT C 0 PASS DP=26;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:5,5:0,2 +chr12 63538702 . G A 0 PASS DP=98;GPV=1;SPV=0.02161;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:26,7:20,2 +chr12 64258945 . C CT 0 PASS DP=25;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:5,2:5,2 +chr12 64288489 . C T 0 PASS DP=36;GPV=1;SPV=0.016203;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:12,4:3,4 +chr12 65639747 . T TCTCTCTGACACA 0 PASS DP=44;GPV=1;SPV=0.00052506;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:6,7:4,4 +chr12 65639748 . G C 0 PASS DP=38;GPV=1;SPV=0.00096036;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,12:6,7:3,5 +chr12 68277320 . A G 0 PASS DP=58;GPV=1;SPV=0.048259;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,3:7,1 +chr12 68417459 . G GAA 0 PASS DP=53;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:19,1:4,3 +chr12 68450327 . T TTA 0 PASS DP=18;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:2,3:1,4 +chr12 68528198 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.046953;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:2,4:2,3:0,1 +chr12 68937641 . G A 0 PASS DP=86;GPV=1;SPV=1.277e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:16,10:12,9 +chr12 69357532 . C CTT 0 PASS DP=40;GPV=1;SPV=0.073359;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,4:8,2:8,2 +chr12 69817653 . T TACACACACACACAC 0 PASS DP=55;GPV=1;SPV=0.0401;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:10,11:5,7:5,4 +chr12 70018140 . G A 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,2:5,2 +chr12 71468709 . C CT 0 PASS DP=30;GPV=1;SPV=0.0069996;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,7:4,6:2,1 +chr12 73061526 . AAT A 0 PASS DP=41;GPV=1;SPV=0.0051416;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:8,6:7,4 +chr12 73488896 . G A 0 PASS DP=67;GPV=1;SPV=3.6127e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:11,8:8,8 +chr12 76077980 . C CAA 0 PASS DP=46;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,9:4,1 +chr12 77946260 . C T 0 PASS DP=81;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:19,4:11,1:8,3 +chr12 80962382 . AC A 0 PASS DP=70;GPV=1;SPV=0.047571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:26,1:8,4 +chr12 81145358 . G A 0 PASS DP=98;GPV=1;SPV=1.9952e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:13,11:15,11 +chr12 81498080 . G A 0 PASS DP=89;GPV=1;SPV=1.6776e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:28,23:15,10:13,13 +chr12 81562574 . G A 0 PASS DP=93;GPV=1;SPV=0.00082339;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:21,8:21,4 +chr12 82993260 . G A 0 PASS DP=87;GPV=1;SPV=0.0013338;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:15,7:24,4 +chr12 84352437 . A AT 0 PASS DP=58;GPV=1;SPV=0.012731;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,7:12,4:13,3 +chr12 84554009 . T C 0 PASS DP=26;GPV=1;SPV=0.037681;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,5:4,2 +chr12 85201243 . C CT 0 PASS DP=47;GPV=1;SPV=0.0093112;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,6:5,3 +chr12 85860503 . G T 0 PASS DP=33;GPV=1;SPV=0.15584;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,2:3,1:4,1 +chr12 86433743 . G A 0 PASS DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:15,8:12,8 +chr12 87549406 . A G 0 PASS DP=33;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,3:6,3:0,0 +chr12 88548425 . G C 0 PASS DP=77;GPV=1;SPV=3.4893e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:11,13:11,7 +chr12 88664963 . A ATGTGTG 0 PASS DP=48;GPV=1;SPV=0.01726;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,10:5,7:6,3 +chr12 89412848 . T TTCCTTCCTTTCC 0 PASS DP=48;GPV=1;SPV=0.017166;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:5,1:14,6 +chr12 91240357 . A T 0 PASS DP=93;GPV=1;SPV=5.8593e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:34,18:17,8:17,10 +chr12 92680235 . C A 0 PASS DP=69;GPV=1;SPV=0.040413;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:19,1:9,8 +chr12 92761625 . AG A 0 PASS DP=62;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:14,6:9,4:5,2 +chr12 93548022 . CCCTTCCTTCCTTCCTT C 0 PASS DP=48;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,8:6,3:8,5 +chr12 94692459 . G GTATATATAATA 0 PASS DP=51;GPV=1;SPV=0.1056;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,5:19,4:8,1 +chr12 95216669 . C CAA 0 PASS DP=41;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,4:7,3:3,1 +chr12 96086880 . C CT 0 PASS DP=27;GPV=1;SPV=0.066957;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:8,3:2,1 +chr12 96190492 . C CT 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr12 97144381 . C A 0 PASS DP=77;GPV=1;SPV=0.0056092;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:14,4:20,4 +chr12 97595809 . G T 0 PASS DP=82;GPV=1;SPV=0.0019055;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:36,10:12,7:24,3 +chr12 100515057 . C T 0 PASS DP=81;GPV=1;SPV=4.2346e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:12,8:18,7 +chr12 101185906 . C T 0 PASS DP=79;GPV=1;SPV=1.2848e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:12,6:12,12 +chr12 101212484 . C CT 0 PASS DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:8,11:5,9:3,2 +chr12 101591837 . C T 0 PASS DP=60;GPV=1;SPV=0.0154;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:6,3:16,6 +chr12 101614325 . T A 0 PASS DP=85;GPV=1;SPV=0.053518;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:25,7:7,4:18,3 +chr12 101661915 . A AAAAGAAAGAAAGAAAG 0 PASS DP=37;GPV=1;SPV=0.069853;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,2:9,3 +chr12 106908276 . CT C 0 PASS DP=22;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,3:1,2 +chr12 107196356 . T G 0 PASS DP=44;GPV=1;SPV=0.06523;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:6,1:13,3 +chr12 107999325 . G GTT 0 PASS DP=49;GPV=1;SPV=0.040159;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,5:3,1 +chr12 108212615 . A T 0 PASS DP=53;GPV=1;SPV=0.01641;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,3:10,3 +chr12 108347833 . T TTTTGTAAATATATA 0 PASS DP=58;GPV=1;SPV=0.10313;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,4:14,2:11,2 +chr12 108425213 . TTTTTGTTTTG T 0 PASS DP=62;GPV=1;SPV=0.0018135;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:2,6:15,8 +chr12 108490233 . T TAAA 0 PASS DP=47;GPV=1;SPV=0.25822;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,5:15,3:11,2 +chr12 108712570 . CA C 0 PASS DP=45;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:15,9:5,1 +chr12 109046092 . CT C 0 PASS DP=22;GPV=1;SPV=0.0093911;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:3,7:3,1 +chr12 110392092 . C A 0 PASS DP=46;GPV=1;SPV=0.071485;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,7:15,2:3,5 +chr12 110867438 . C T 0 PASS DP=34;GPV=1;SPV=0.083578;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,3:8,1 +chr12 111616957 . A T 0 PASS DP=62;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:4,1:0,1 +chr12 113976473 . A AAAG 0 PASS DP=57;GPV=1;SPV=0.043024;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,9:7,2:13,7 +chr12 114367244 . ACAAAAAAG A 0 PASS DP=59;GPV=1;SPV=0.16219;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:22,3:12,1 +chr12 114580338 . C CAA 0 PASS DP=32;GPV=1;SPV=0.0032151;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,10:1,9:1,1 +chr12 114589716 . C CAAAAA 0 PASS DP=31;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:6,4:2,1 +chr12 116120479 . A T 0 PASS DP=47;GPV=1;SPV=0.027836;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,4:7,2:3,2 +chr12 118179207 . C T 0 PASS DP=86;GPV=1;SPV=0.00035448;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:22,3:7,6 +chr12 118362317 . T TAAA 0 PASS DP=45;GPV=1;SPV=0.025088;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:14,3:5,3 +chr12 118777194 . A T 0 PASS DP=77;GPV=1;SPV=2.6323e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:22,21:12,12:10,9 +chr12 119160301 . C G 0 PASS DP=81;GPV=1;SPV=0.049315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:25,9:7,5:18,4 +chr12 119234527 . CATATATATATAT C 0 PASS DP=32;GPV=1;SPV=0.017028;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,6:5,5:1,1 +chr12 119456064 . C A 0 PASS DP=45;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:16,11:7,7:9,4 +chr12 120952465 . CAA C 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:5,7:8,2 +chr12 120960569 . G GA 0 PASS DP=56;GPV=1;SPV=0.00018161;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,10:9,9:7,1 +chr12 122336415 . A T 0 PASS DP=73;GPV=1;SPV=0.26923;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:5,2:2,1:3,1 +chr12 122701007 . C T 0 PASS DP=70;GPV=1;SPV=0.0092671;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,5:11,8 +chr12 122712596 . C CAA 0 PASS DP=54;GPV=1;SPV=0.006529;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,9:11,6:6,3 +chr12 123693376 . C CT 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:3,3:11,3 +chr12 124134997 . C CTTT 0 PASS DP=36;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:8,2:9,2 +chr12 124602540 . C CTT 0 PASS DP=39;GPV=1;SPV=0.0078247;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:4,7:3,2 +chr12 125885746 . T C 0 PASS DP=77;GPV=1;SPV=4.2952e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:14,9:14,6 +chr12 126289622 . G A 0 PASS DP=76;GPV=1;SPV=6.5336e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:9,6:10,9 +chr12 127304833 . A T 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,2:17,2 +chr12 128236113 . G A 0 PASS DP=77;GPV=1;SPV=1.4921e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:13,8:9,4 +chr12 128841485 . A T 0 PASS DP=43;GPV=1;SPV=0.0077765;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,7:4,2:3,5 +chr12 128965732 . A G 0 PASS DP=48;GPV=1;SPV=0.081016;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,7:11,2:6,5 +chr12 129241850 . C A 0 PASS DP=73;GPV=1;SPV=0.00064966;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:16,5:13,6 +chr12 129514986 . T A 0 PASS DP=85;GPV=1;SPV=1.9327e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:27,26:12,14:15,12 +chr12 129586993 . T A 0 PASS DP=84;GPV=1;SPV=1.6403e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:11,13:13,7 +chr12 129877174 . T A 0 PASS DP=57;GPV=1;SPV=0.11988;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,1:16,4 +chr12 130015247 . CT C 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:7,1:8,3 +chr12 131579543 . CTCTCTGTACTGTGTCTG C 0 PASS DP=58;GPV=1;SPV=0.0053893;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:13,2:7,12 +chr12 132267812 . C CAT 0 PASS DP=82;GPV=1;SPV=0.01279;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:14,7:18,7 +chr12 133237285 . T C 0 PASS DP=58;GPV=1;SPV=0.036709;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4 +chr13 18339332 . G T 0 PASS DP=47;GPV=1;SPV=0.049645;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:18,4:1,0 +chr13 19710163 . C A 0 PASS DP=82;GPV=1;SPV=0.0084761;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:19,3:17,4 +chr13 20283337 . G A 0 PASS DP=100;GPV=1;SPV=1.2226e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:37,22:20,12:17,10 +chr13 21447930 . C T 0 PASS DP=44;GPV=1;SPV=0.043206;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:13,6:4,1 +chr13 21743410 . T C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:6,1:8,3 +chr13 22215066 . A C 0 PASS DP=65;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:5,3:3,1:2,2 +chr13 22625441 . C CATATAT 0 PASS DP=22;GPV=1;SPV=0.043512;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,5:2,2:1,3 +chr13 22781019 . T TTG 0 PASS DP=58;GPV=1;SPV=0.00023992;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,11:10,6:9,5 +chr13 22868769 . TATA T 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:6,3:10,2 +chr13 24318682 . T C 0 PASS DP=101;GPV=1;SPV=0.030381;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:45,10:24,6:21,4 +chr13 26178591 . C CGTGTGTGTGT 0 PASS DP=21;GPV=1;SPV=0.11053;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:5,2:0,0 +chr13 28493115 . C CA 0 PASS DP=87;GPV=1;SPV=4.1567e-05;SS=2;SSC=43;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:34,16:16,5:18,11 +chr13 28819747 . A AGCTGGG 0 PASS DP=73;GPV=1;SPV=0.010181;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:25,9:8,3 +chr13 30928825 . G A 0 PASS DP=102;GPV=1;SPV=6.8293e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:20,2:17,10 +chr13 32405892 . CTT C 0 PASS DP=42;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,6:9,3:8,3 +chr13 32436785 . C CA 0 PASS DP=33;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,5:6,4:3,1 +chr13 32631118 . C T 0 PASS DP=56;GPV=1;SPV=0.048309;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:9,7:8,3:1,4 +chr13 34885994 . A C 0 PASS DP=51;GPV=1;SPV=0.043479;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:14,7:5,2 +chr13 35010753 . T A 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,4:6,1 +chr13 36009672 . G T 0 PASS DP=40;GPV=1;SPV=0.29987;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:14,2:12,2 +chr13 36869777 . C T 0 PASS DP=70;GPV=1;SPV=2.1223e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:10,8:10,4 +chr13 37259431 . CA C 0 PASS DP=43;GPV=1;SPV=0.0063578;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:10,3:4,3 +chr13 38646241 . C T 0 PASS DP=74;GPV=1;SPV=0.0011256;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,4:13,5 +chr13 38866667 . C CA 0 PASS DP=55;GPV=1;SPV=0.00043265;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:17,10:12,9:5,1 +chr13 39114436 . T G 0 PASS DP=100;GPV=1;SPV=3.6897e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,22:20,11:10,11 +chr13 39490095 . CAA C 0 PASS DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:21,3:13,1 +chr13 39562603 . T C 0 PASS DP=59;GPV=1;SPV=0.025505;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,8:14,4:7,4 +chr13 39562605 . TAC T 0 PASS DP=64;GPV=1;SPV=0.036217;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,8:16,3:9,5 +chr13 41447470 . A AT 0 PASS DP=129;GPV=1;SPV=0.00010853;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:50,24:24,8:26,16 +chr13 43940571 . TTTC T 0 PASS DP=63;GPV=1;SPV=0.03601;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:8,4:15,4 +chr13 44717446 . T C 0 PASS DP=77;GPV=1;SPV=0.0098053;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:15,4:16,2 +chr13 45103866 . C CT 0 PASS DP=34;GPV=1;SPV=0.03183;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:7,7:5,5 +chr13 45938615 . G A 0 PASS DP=78;GPV=1;SPV=3.542e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:12,7:11,8 +chr13 46635467 . C CTT 0 PASS DP=37;GPV=1;SPV=0.023879;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:4,3:10,3 +chr13 46876399 . TATATA T 0 PASS DP=53;GPV=1;SPV=0.012894;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,3:8,3 +chr13 48834704 . C A 0 PASS DP=78;GPV=1;SPV=0.22206;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,4:18,3:8,1 +chr13 49620861 . TA T 0 PASS DP=66;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,4:15,3:10,1 +chr13 51371263 . C G 0 PASS DP=82;GPV=1;SPV=3.5378e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:14,11:14,8 +chr13 54456982 . C T 0 PASS DP=49;GPV=1;SPV=0.1121;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,1:17,3 +chr13 54822460 . C A 0 PASS DP=78;GPV=1;SPV=0.0030923;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:15,5:19,4 +chr13 54978196 . T TCTG 0 PASS DP=76;GPV=1;SPV=0.0031698;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,9:15,4:17,5 +chr13 54978198 . C T 0 PASS DP=46;GPV=1;SPV=0.0047817;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,9:0,4:15,5 +chr13 55939310 . CA C 0 PASS DP=30;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:3,7:4,1 +chr13 56047122 . G GAA 0 PASS DP=47;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,4:10,2:4,2 +chr13 56059202 . G T 0 PASS DP=51;GPV=1;SPV=1.7034e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:10,8:2,4 +chr13 56673893 . G A 0 PASS DP=69;GPV=1;SPV=0.068138;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,2:20,2 +chr13 56886793 . G C 0 PASS DP=92;GPV=1;SPV=0.0057679;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:42,8:18,5:24,3 +chr13 59366827 . A AAAAAAAAAAAAAGAAAAAAG 0 PASS DP=54;GPV=1;SPV=0.01134;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:3,3:11,5 +chr13 60567892 . T A 0 PASS DP=53;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,2:3,1:3,1 +chr13 62709373 . G A 0 PASS DP=89;GPV=1;SPV=2.6125e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:9,12:12,10 +chr13 63651229 . CAAAA C 0 PASS DP=53;GPV=1;SPV=0.016883;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:12,7:6,3 +chr13 64029473 . C T 0 PASS DP=83;GPV=1;SPV=2.0665e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:12,9:12,6 +chr13 65030733 . CTTTT C 0 PASS DP=40;GPV=1;SPV=0.037198;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,12:4,6:6,6 +chr13 65287935 . TTA T 0 PASS DP=40;GPV=1;SPV=0.015215;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,3:6,5 +chr13 65550403 . A AT 0 PASS DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:15,5:17,2 +chr13 65937905 . CTCTCTCAGTGTG C 0 PASS DP=62;GPV=1;SPV=0.030107;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:11,2:9,5 +chr13 67280322 . C T 0 PASS DP=81;GPV=1;SPV=5.3034e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,6:9,8 +chr13 67861113 . A T 0 PASS DP=29;GPV=1;SPV=0.0094953;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,13:4,4:3,9 +chr13 68341888 . C G 0 PASS DP=101;GPV=1;SPV=1.1616e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,24:14,11:12,13 +chr13 68520918 . G A 0 PASS DP=75;GPV=1;SPV=0.043461;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:20,6:17,3 +chr13 69231759 . C CT 0 PASS DP=36;GPV=1;SPV=0.03602;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:8,5:3,1 +chr13 71477108 . T A 0 PASS DP=33;GPV=1;SPV=0.042772;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:6,5:8,1 +chr13 71864180 . T TACAC 0 PASS DP=27;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:1,5:6,2 +chr13 72628285 . C T 0 PASS DP=84;GPV=1;SPV=1.467e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:32,19:18,12:14,7 +chr13 72809132 . C CTTTT 0 PASS DP=30;GPV=1;SPV=0.017149;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:3,6:3,2 +chr13 75106360 . AC A 0 PASS DP=90;GPV=1;SPV=2.1173e-06;SS=2;SSC=56;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:12,8:19,11 +chr13 75391036 . A C 0 PASS DP=59;GPV=1;SPV=0.13333;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,2:1,1:1,1 +chr13 75687265 . G A 0 PASS DP=81;GPV=1;SPV=9.9664e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:23,5:10,11 +chr13 76031962 . G A 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,2:12,2 +chr13 76259937 . T C 0 PASS DP=61;GPV=1;SPV=0.00079043;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,10:2,8:12,2 +chr13 79438248 . AT A 0 PASS DP=25;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr13 79619710 . G A 0 PASS DP=73;GPV=1;SPV=0.0007273;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:14,2:12,7 +chr13 79669998 . A AACACACACAC 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:5,3:5,1 +chr13 80106247 . G A 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,1:9,3 +chr13 80648002 . T C 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:10,1:16,3 +chr13 80648035 . A G 0 PASS DP=37;GPV=1;SPV=0.24176;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,4:3,2:4,2 +chr13 80803021 . C T 0 PASS DP=76;GPV=1;SPV=0.22704;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:9,7:7,4:2,3 +chr13 82684632 . T A 0 PASS DP=76;GPV=1;SPV=0.029693;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:8,6:18,3 +chr13 84745270 . G GA 0 PASS DP=53;GPV=1;SPV=0.065982;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,4:6,3:8,1 +chr13 85437319 . G A 0 PASS DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:17,4:15,2 +chr13 85437344 . G T 0 PASS DP=67;GPV=1;SPV=0.027663;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,2:14,4 +chr13 85560807 . G A 0 PASS DP=72;GPV=1;SPV=1.721e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,17:12,13:5,4 +chr13 86078171 . TACAC T 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,1:5,5 +chr13 86078187 . T C 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4 +chr13 86538288 . G GTGTA 0 PASS DP=35;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:1,3:1,1:0,2 +chr13 86655220 . CTT C 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:5,2:5,3 +chr13 88224501 . C G 0 PASS DP=20;GPV=1;SPV=0.070707;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:2,3:1,1 +chr13 88930417 . A G 0 PASS DP=33;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,2:3,1:0,1 +chr13 89441265 . A AATGGATGG 0 PASS DP=53;GPV=1;SPV=0.0095925;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,5:7,4 +chr13 90249759 . A AGAAAG 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr13 90372376 . CA C 0 PASS DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:23,3:6,2 +chr13 91398650 . GGGCGGCGGAGGCGGC G 0 PASS DP=102;GPV=1;SPV=0.0060488;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:20,2:19,4 +chr13 93491145 . A G 0 PASS DP=53;GPV=1;SPV=0.1228;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:10,1:18,3 +chr13 95025502 . G A 0 PASS DP=20;GPV=1;SPV=0.00054667;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:10:1,9:1,8:0,1 +chr13 96468477 . T C 0 PASS DP=73;GPV=1;SPV=0.010062;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:6,9:3,8:3,1 +chr13 96499030 . T A 0 PASS DP=71;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:7,2:5,1:2,1 +chr13 97001186 . C T 0 PASS DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:22,5:17,1 +chr13 97001187 . C T 0 PASS DP=73;GPV=1;SPV=0.023384;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,8:19,6:15,2 +chr13 97320261 . C CT 0 PASS DP=40;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,6:6,2 +chr13 97696568 . C T 0 PASS DP=103;GPV=1;SPV=2.8389e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:14,12:14,7 +chr13 98559002 . TAAAAAAAAAAA T 0 PASS DP=38;GPV=1;SPV=0.0070393;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,10:4,7:5,3 +chr13 99637962 . CT C 0 PASS DP=39;GPV=1;SPV=0.0059157;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:5,5:6,2 +chr13 100043996 . A ATT 0 PASS DP=31;GPV=1;SPV=0.043255;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:2,1:5,4 +chr13 100505843 . T G 0 PASS DP=52;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1 +chr13 101346089 . A C 0 PASS DP=47;GPV=1;SPV=0.092902;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,3:14,2 +chr13 101346091 . A C 0 PASS DP=46;GPV=1;SPV=0.10755;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:11,2:12,2 +chr13 102245264 . G T 0 PASS DP=94;GPV=1;SPV=1.9604e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:15,6:18,8 +chr13 103445508 . C A 0 PASS DP=85;GPV=1;SPV=0.0017218;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:26,5:9,4 +chr13 104097476 . G A 0 PASS DP=77;GPV=1;SPV=0.015935;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:19,5:18,2 +chr13 104302092 . A T 0 PASS DP=100;GPV=1;SPV=0.13598;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:30,4:18,1:12,3 +chr13 104325344 . G T 0 PASS DP=74;GPV=1;SPV=0.071484;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:13,2:22,2 +chr13 104512774 . T A 0 PASS DP=103;GPV=1;SPV=0.00037812;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:46,13:24,7:22,6 +chr13 107279043 . CT C 0 PASS DP=27;GPV=1;SPV=0.041809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:6,2:5,4 +chr13 108699076 . GTC G 0 PASS DP=75;GPV=1;SPV=0.0016383;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:12,8:13,10 +chr13 108873751 . T G 0 PASS DP=40;GPV=1;SPV=0.0023885;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,11:4,3:7,8 +chr13 109228451 . C T 0 PASS DP=86;GPV=1;SPV=0.00028692;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:38,15:21,5:17,10 +chr13 109346813 . A ATGTGTGTG 0 PASS DP=45;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:10,3:11,1 +chr13 112195638 . C CCCTT 0 PASS DP=47;GPV=1;SPV=0.04242;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:4,1:13,5 +chr13 112297897 . G C 0 PASS DP=46;GPV=1;SPV=0.036642;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,1:9,5 +chr13 114195916 . C CA 0 PASS DP=51;GPV=1;SPV=0.0015389;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:9,12:5,2 +chr14 18275569 . G A 0 PASS DP=66;GPV=1;SPV=0.040392;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:16,3:12,4 +chr14 18277913 . G A 0 PASS DP=18;GPV=1;SPV=0.031674;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:0,1:3,4 +chr14 18293396 . T C 0 PASS DP=65;GPV=1;SPV=0.027835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:24,8:4,5 +chr14 18348735 . T A 0 PASS DP=46;GPV=1;SPV=0.03876;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,2:9,3 +chr14 18600029 . A G 0 PASS DP=101;GPV=1;SPV=0.03782;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:44,9:34,7:10,2 +chr14 18623916 . G T 0 PASS DP=83;GPV=1;SPV=0.048554;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:31,12:6,1 +chr14 18675772 . G A 0 PASS DP=106;GPV=1;SPV=0.0018642;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:26,15:13,11:13,4 +chr14 18701161 . C CA 0 PASS DP=109;GPV=1;SPV=0.0075688;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:27,15:12,2 +chr14 18883954 . A G 0 PASS DP=48;GPV=1;SPV=0.090194;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:8,1:15,3 +chr14 18903501 . C A 0 PASS DP=71;GPV=1;SPV=0.023213;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:1,4:32,6 +chr14 18930867 . G T 0 PASS DP=268;GPV=1;SPV=0.0090992;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:116,24:72,14:44,10 +chr14 18967593 . G A 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,2:0,1 +chr14 19008500 . G C 0 PASS DP=64;GPV=1;SPV=0.11618;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:8,1:26,3 +chr14 19009534 . G T 0 PASS DP=138;GPV=1;SPV=0.04659;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:61,15:21,8:40,7 +chr14 19023336 . TTCTTTTTCCTTCC T 0 PASS DP=57;GPV=1;SPV=0.14912;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,3:18,1 +chr14 19075816 . A G 0 PASS DP=65;GPV=1;SPV=0.0071887;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:15,4:9,2 +chr14 19080792 . C T 0 PASS DP=138;GPV=1;SPV=0.021872;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:65,11:45,7:20,4 +chr14 19130715 . T C 0 PASS DP=171;GPV=1;SPV=0.028804;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:66,17:39,9:27,8 +chr14 19132173 . T C 0 PASS DP=147;GPV=1;SPV=0.036884;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:63,10:30,7:33,3 +chr14 19157089 . G A 0 PASS DP=101;GPV=1;SPV=0.039124;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:49,8:35,7:14,1 +chr14 19158466 . C G 0 PASS DP=115;GPV=1;SPV=0.0074315;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:27,9:24,1 +chr14 19167784 . T G 0 PASS DP=302;GPV=1;SPV=0.0051068;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:162:132,30:63,10:69,20 +chr14 19182046 . C T 0 PASS DP=289;GPV=1;SPV=0.025097;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:153:131,22:59,18:72,4 +chr14 19203458 . C A 0 PASS DP=196;GPV=1;SPV=0.025927;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:84,18:45,7:39,11 +chr14 19209070 . T C 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:6,3:14,1 +chr14 19267820 . C T 0 PASS DP=379;GPV=1;SPV=0.02757;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:206:183,23:91,15:92,8 +chr14 19296488 . C A 0 PASS DP=34;GPV=1;SPV=0.27277;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0 +chr14 19296490 . C T 0 PASS DP=31;GPV=1;SPV=0.23248;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr14 19303656 . C G 0 PASS DP=88;GPV=1;SPV=0.0023146;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,8:16,5 +chr14 19331110 . T C 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,3:0,0 +chr14 19340923 . C A 0 PASS DP=116;GPV=1;SPV=0.04753;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:52,5:7,3 +chr14 19367032 . T A 0 PASS DP=18;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:6,4:0,0 +chr14 19436243 . C G 0 PASS DP=296;GPV=1;SPV=0.0055829;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:129,23:80,6:49,17 +chr14 19487998 . C T 0 PASS DP=325;GPV=1;SPV=0.012617;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:172:153,19:91,10:62,9 +chr14 19498454 . G T 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:5,2:0,2 +chr14 19507184 . G C 0 PASS DP=60;GPV=1;SPV=0.024122;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,6:8,2:13,4 +chr14 19716664 . CTTTTT C 0 PASS DP=39;GPV=1;SPV=0.1143;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,4:10,3:7,1 +chr14 19724259 . G T 0 PASS DP=143;GPV=1;SPV=0.013119;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:66,9:34,8:32,1 +chr14 19724585 . C G 0 PASS DP=133;GPV=1;SPV=0.0079005;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:51,19:25,11:26,8 +chr14 20275448 . A G 0 PASS DP=87;GPV=1;SPV=0.0048847;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:27,4:14,5 +chr14 20638971 . A G 0 PASS DP=63;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:6,5:4,1:2,4 +chr14 21255222 . G C 0 PASS DP=84;GPV=1;SPV=1.2576e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:13,7:14,12 +chr14 21302865 . G GT 0 PASS DP=34;GPV=1;SPV=0.034996;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:12,4:2,2 +chr14 23858347 . C T 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:24,3:12,1 +chr14 25206151 . C T 0 PASS DP=95;GPV=1;SPV=0.038164;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:25,5:16,4 +chr14 25866235 . CTATA C 0 PASS DP=24;GPV=1;SPV=0.019231;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:3,9:1,5:2,4 +chr14 26452982 . G T 0 PASS DP=61;GPV=1;SPV=0.052515;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,2:15,2 +chr14 26624273 . C A 0 PASS DP=77;GPV=1;SPV=0.0034956;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:24,6:10,3 +chr14 26975883 . T C 0 PASS DP=84;GPV=1;SPV=7.5582e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:12,9:20,5 +chr14 27030195 . GT G 0 PASS DP=31;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:7,6:2,2 +chr14 27069381 . G A 0 PASS DP=64;GPV=1;SPV=0.0013223;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:15,5:7,3 +chr14 27420828 . C T 0 PASS DP=85;GPV=1;SPV=8.4049e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:10,6:20,6 +chr14 28242328 . G A 0 PASS DP=89;GPV=1;SPV=3.8111e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:18,8:13,10 +chr14 28370799 . C A 0 PASS DP=86;GPV=1;SPV=1.8466e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:9,8:16,7 +chr14 29722786 . T G 0 PASS DP=77;GPV=1;SPV=5.3456e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:10,9:10,7 +chr14 30003083 . CT C 0 PASS DP=83;GPV=1;SPV=0.0086439;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:16,4:17,2 +chr14 30084265 . C A 0 PASS DP=86;GPV=1;SPV=1.2077e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:13,11:12,10 +chr14 31650291 . T C 0 PASS DP=61;GPV=1;SPV=0.044578;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:27,8:21,6:6,2 +chr14 31831518 . T C 0 PASS DP=74;GPV=1;SPV=0.040005;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:21,5:11,5 +chr14 31831522 . CT C 0 PASS DP=75;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:22,3:12,4 +chr14 32068460 . C CATACATACATAGATAG 0 PASS DP=52;GPV=1;SPV=0.0051214;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:11,5:7,6 +chr14 32532619 . G A 0 PASS DP=95;GPV=1;SPV=1.5483e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:28,19:14,11:14,8 +chr14 32800165 . C T 0 PASS DP=64;GPV=1;SPV=0.042367;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:19,5:10,3 +chr14 32967914 . T A 0 PASS DP=93;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:3,3:1,2:2,1 +chr14 33165234 . C T 0 PASS DP=103;GPV=1;SPV=3.0434e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:18,8:13,14 +chr14 34341564 . G GTTTTTTTTTTTT 0 PASS DP=51;GPV=1;SPV=0.12591;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:18,2:9,2 +chr14 34442955 . G T 0 PASS DP=46;GPV=1;SPV=0.0088608;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:4,6:10,2 +chr14 34477676 . A C 0 PASS DP=62;GPV=1;SPV=0.00016626;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:9,8:14,7 +chr14 35314744 . C T 0 PASS DP=63;GPV=1;SPV=0.13408;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,4:10,1:9,3 +chr14 36913491 . G A 0 PASS DP=87;GPV=1;SPV=0.0014226;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:19,4:24,10 +chr14 37144786 . T G 0 PASS DP=73;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,2:0,1:0,1 +chr14 37200900 . ATT A 0 PASS DP=29;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,5:3,2:4,3 +chr14 38020623 . G GGAAA 0 PASS DP=46;GPV=1;SPV=0.28571;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:2,2:1,1:1,1 +chr14 40079351 . C G 0 PASS DP=74;GPV=1;SPV=2.4501e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:18,23:11,13:7,10 +chr14 40327825 . T C 0 PASS DP=60;GPV=1;SPV=0.027884;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:18,2:4,7 +chr14 44939478 . T C 0 PASS DP=81;GPV=1;SPV=8.2732e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,8:12,6 +chr14 47328511 . G A 0 PASS DP=83;GPV=1;SPV=1.3827e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:7,10:12,9 +chr14 48092117 . CT C 0 PASS DP=63;GPV=1;SPV=0.0016295;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:19,7:5,2 +chr14 48117599 . T G 0 PASS DP=81;GPV=1;SPV=5.9462e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:20,19:11,8:9,11 +chr14 48297784 . T C 0 PASS DP=88;GPV=1;SPV=2.3127e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:18,7:15,9 +chr14 48623342 . CAAT C 0 PASS DP=60;GPV=1;SPV=0.01186;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:11,3:13,3 +chr14 48838104 . A AGTATAT 0 PASS DP=96;GPV=1;SPV=0.0016268;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:48,13:22,11:26,2 +chr14 48864561 . C T 0 PASS DP=79;GPV=1;SPV=1.1187e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:11,6:9,8 +chr14 50298241 . C CA 0 PASS DP=70;GPV=1;SPV=0.0028764;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,9:14,6:15,3 +chr14 50592913 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0090305;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:6,3:4,5 +chr14 50706587 . C A 0 PASS DP=46;GPV=1;SPV=0.030455;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,7:6,1:5,6 +chr14 50804024 . T C 0 PASS DP=89;GPV=1;SPV=0.00013722;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:17,5:18,8 +chr14 52114937 . T TTTCCTTCCTTCC 0 PASS DP=55;GPV=1;SPV=0.0090318;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,7:6,2:11,5 +chr14 53220706 . C CT 0 PASS DP=72;GPV=1;SPV=0.015262;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:22,1:12,6 +chr14 56952731 . A AATTT 0 PASS DP=53;GPV=1;SPV=0.0033813;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:15,8:9,5:6,3 +chr14 59706254 . G A 0 PASS DP=93;GPV=1;SPV=1.1021e-09;SS=2;SSC=89;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:14,16:8,7 +chr14 60150195 . A G 0 PASS DP=71;GPV=1;SPV=0.041463;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,3:14,3 +chr14 62069460 . T A 0 PASS DP=88;GPV=1;SPV=0.0022758;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:19,4:21,6 +chr14 65242028 . C CA 0 PASS DP=54;GPV=1;SPV=0.016958;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,13:13,10:6,3 +chr14 67239659 . C T 0 PASS DP=86;GPV=1;SPV=3.4636e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:18,9:15,7 +chr14 67610681 . T G 0 PASS DP=93;GPV=1;SPV=1.1251e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:13,6:18,8 +chr14 70612062 . G A 0 PASS DP=55;GPV=1;SPV=0.046393;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:14,2:14,4 +chr14 71462760 . G A 0 PASS DP=94;GPV=1;SPV=2.4736e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:10,9:19,6 +chr14 71741826 . C T 0 PASS DP=78;GPV=1;SPV=2.6327e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:6,10:12,9 +chr14 72825700 . A T 0 PASS DP=46;GPV=1;SPV=0.22222;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:0,0:3,2 +chr14 73404927 . A G 0 PASS DP=90;GPV=1;SPV=2.6657e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:23,25:9,15:14,10 +chr14 73537688 . C T 0 PASS DP=78;GPV=1;SPV=0.07266;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:15,3:27,2 +chr14 78500814 . AC A 0 PASS DP=93;GPV=1;SPV=8.6e-07;SS=2;SSC=60;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:32,21:14,12:18,9 +chr14 78500816 . T A 0 PASS DP=89;GPV=1;SPV=1.1886e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,20:13,12:17,8 +chr14 79958641 . C G 0 PASS DP=87;GPV=1;SPV=1.1457e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:18,12:6,7 +chr14 81593003 . TTCTC T 0 PASS DP=72;GPV=1;SPV=0.01488;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:12,3:19,3 +chr14 82675517 . C CCT 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,3:12,1 +chr14 82675520 . A C 0 PASS DP=62;GPV=1;SPV=0.14145;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,4:16,3:18,1 +chr14 82745894 . G A 0 PASS DP=72;GPV=1;SPV=0.026013;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:21,5:16,2 +chr14 83518393 . G A 0 PASS DP=42;GPV=1;SPV=0.013612;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,11:8,2 +chr14 83643358 . T C 0 PASS DP=72;GPV=1;SPV=0.079949;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,1:16,3 +chr14 83643359 . T C 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:19,1:16,3 +chr14 84975142 . A ATTTT 0 PASS DP=51;GPV=1;SPV=0.037117;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,10:9,7:12,3 +chr14 85700546 . T TGTATATATATATATACAC 0 PASS DP=50;GPV=1;SPV=0.041607;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:13,5:9,4 +chr14 85757078 . G A 0 PASS DP=83;GPV=1;SPV=0.00011418;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:13,4:17,8 +chr14 86443404 . T A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:4,3:6,1 +chr14 86443424 . T TATTA 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:5,2:7,2 +chr14 86443426 . A AT 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:4,2:7,2 +chr14 86443457 . ATAT A 0 PASS DP=22;GPV=1;SPV=0.092437;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:4,3:3,2 +chr14 87053919 . C CAT 0 PASS DP=83;GPV=1;SPV=0.031137;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,11:17,4:19,7 +chr14 87298808 . A T 0 PASS DP=70;GPV=1;SPV=0.0042046;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:15,4:16,5 +chr14 87592377 . TACATATATATAC T 0 PASS DP=22;GPV=1;SPV=0.025112;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,4:0,2:3,2 +chr14 87625150 . G GGTGTGTGTGTGTGTGTGT 0 PASS DP=62;GPV=1;SPV=0.0047438;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:6,7:12,6 +chr14 87690858 . C CAAA 0 PASS DP=41;GPV=1;SPV=0.034438;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:10,7:4,1 +chr14 87754364 . TAA T 0 PASS DP=27;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:7,4:3,1 +chr14 87997375 . CT C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:15,3:2,1 +chr14 88279364 . CGT C 0 PASS DP=71;GPV=1;SPV=0.016381;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:27,4:7,6 +chr14 89246542 . C CTTTTTTT 0 PASS DP=23;GPV=1;SPV=0.023715;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,3:2,1 +chr14 89446196 . C T 0 PASS DP=24;GPV=1;SPV=0.027972;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,5:0,2:3,3 +chr14 90126442 . T C 0 PASS DP=87;GPV=1;SPV=0.03614;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:19,4:24,5 +chr14 90142313 . CTT C 0 PASS DP=33;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,5:6,4:4,1 +chr14 90235234 . G T 0 PASS DP=100;GPV=1;SPV=9.4293e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:33,24:19,13:14,11 +chr14 90793611 . TTC T 0 PASS DP=83;GPV=1;SPV=0.047211;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:20,4:21,1 +chr14 91235478 . TA T 0 PASS DP=61;GPV=1;SPV=0.017694;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:12,6:7,5:5,1 +chr14 91967135 . CTTTT C 0 PASS DP=45;GPV=1;SPV=0.046124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:14,8:6,3 +chr14 92661723 . T TCACACACACACACA 0 PASS DP=64;GPV=1;SPV=0.011835;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:9,8:12,4 +chr14 93758594 . CA C 0 PASS DP=50;GPV=1;SPV=0.0021328;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:10,13:7,3 +chr14 94577597 . A AATGGATGGATGGATGG 0 PASS DP=40;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,6:8,2 +chr14 94577713 . A G 0 PASS DP=49;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,6:7,3:9,3 +chr14 95565365 . CAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.0012204;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:3,6:1,3 +chr14 95731012 . CA C 0 PASS DP=44;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:17,4:3,1 +chr14 96288807 . G A 0 PASS DP=52;GPV=1;SPV=0.067038;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,5:17,1:1,4 +chr14 96340090 . ATATGC A 0 PASS DP=42;GPV=1;SPV=0.0063215;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:5,5:10,2 +chr14 96340102 . G T 0 PASS DP=38;GPV=1;SPV=0.0041611;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,6:8,2 +chr14 96340103 . A C 0 PASS DP=38;GPV=1;SPV=0.016908;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:9,6:3,4:6,2 +chr14 96402185 . G GCA 0 PASS DP=60;GPV=1;SPV=0.040001;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,11:15,9:9,2 +chr14 96923926 . C G 0 PASS DP=50;GPV=1;SPV=0.14923;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:24,3:15,2:9,1 +chr14 97788393 . AT A 0 PASS DP=45;GPV=1;SPV=0.024094;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3 +chr14 99040695 . G A 0 PASS DP=81;GPV=1;SPV=4.9392e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:18,5:7,10 +chr14 99090775 . G C 0 PASS DP=72;GPV=1;SPV=2.5041e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:11,8:14,8 +chr14 101724124 . C CTATA 0 PASS DP=31;GPV=1;SPV=0.0075746;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:2,3:6,2 +chr14 101724481 . A ATG 0 PASS DP=63;GPV=1;SPV=0.019978;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:9,3:11,3 +chr14 102534417 . C CA 0 PASS DP=39;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,6:5,1 +chr14 102919147 . CT C 0 PASS DP=23;GPV=1;SPV=0.012384;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,5:2,3:3,2 +chr14 103455725 . C CA 0 PASS DP=43;GPV=1;SPV=0.0039567;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,12:7,9:4,3 +chr14 104618695 . C T 0 PASS DP=93;GPV=1;SPV=0.016099;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:15,3:27,3 +chr14 104941075 . A G 0 PASS DP=89;GPV=1;SPV=5.6174e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:15,10:15,6 +chr14 105117430 . C T 0 PASS DP=92;GPV=1;SPV=2.9216e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:14,10:13,8 +chr14 105578997 . C G 0 PASS DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,4:3,3 +chr14 106336406 . C T 0 PASS DP=111;GPV=1;SPV=0.0066012;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:23,5:21,12 +chr14 106364035 . A C 0 PASS DP=164;GPV=1;SPV=0.023607;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:76,15:46,9:30,6 +chr14 106616599 . AT A 0 PASS DP=59;GPV=1;SPV=0.015078;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,10:17,3:7,7 +chr14 106718552 . T C 0 PASS DP=54;GPV=1;SPV=0.0042611;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,4:8,6 +chr14 106742478 . G A 0 PASS DP=43;GPV=1;SPV=0.048497;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:7,3:10,1 +chr15 17043584 . A T 0 PASS DP=78;GPV=1;SPV=0.036099;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,6:11,5:18,1 +chr15 17071844 . T TAATAA 0 PASS DP=156;GPV=1;SPV=0.0075974;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:62,21:32,13:30,8 +chr15 17745355 . C A 0 PASS DP=18;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,4:4,1 +chr15 19940628 . A G 0 PASS DP=172;GPV=1;SPV=0.01412;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:73,16:21,2:52,14 +chr15 19947231 . C T 0 PASS DP=98;GPV=1;SPV=0.04413;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:17,4:24,2 +chr15 19970462 . G A 0 PASS DP=88;GPV=1;SPV=5.014e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:11,10:12,9 +chr15 20046046 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr15 20297628 . A ATGTGTG 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:17,3:8,2 +chr15 20338480 . C T 0 PASS DP=136;GPV=1;SPV=0.034269;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:62,7:32,1:30,6 +chr15 20446348 . T A 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,2:2,2 +chr15 20447359 . G A 0 PASS DP=77;GPV=1;SPV=0.015935;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:19,6:18,1 +chr15 20514557 . G T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,3:7,1 +chr15 20550996 . AT A 0 PASS DP=57;GPV=1;SPV=0.093185;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,4:12,3:9,1 +chr15 20761447 . G C 0 PASS DP=60;GPV=1;SPV=0.039629;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,6:10,3 +chr15 20792295 . A T 0 PASS DP=47;GPV=1;SPV=0.030143;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,1:9,7 +chr15 21109547 . T A 0 PASS DP=25;GPV=1;SPV=0.07913;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:9,4:1,0 +chr15 21109799 . C T 0 PASS DP=65;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:13,2:16,4 +chr15 21130291 . C T 0 PASS DP=50;GPV=1;SPV=0.088906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,1:7,3 +chr15 21390562 . A G 0 PASS DP=46;GPV=1;SPV=0.044826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:6,3:12,1 +chr15 21600826 . TTC T 0 PASS DP=53;GPV=1;SPV=0.13742;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,4:10,1:14,3 +chr15 21611434 . C CT 0 PASS DP=35;GPV=1;SPV=0.018436;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:9,5:2,3 +chr15 22597817 . C T 0 PASS DP=60;GPV=1;SPV=0.05944;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,2:13,3 +chr15 22671885 . G C 0 PASS DP=45;GPV=1;SPV=0.013095;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,5:5,3 +chr15 23175822 . C G 0 PASS DP=125;GPV=1;SPV=0.0021754;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:52,8:29,7:23,1 +chr15 23187645 . CT C 0 PASS DP=250;GPV=1;SPV=0.00038121;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:128:109,19:49,13:60,6 +chr15 23223334 . A C 0 PASS DP=134;GPV=1;SPV=0.01981;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:59,10:33,2:26,8 +chr15 23226593 . C G 0 PASS DP=51;GPV=1;SPV=0.081933;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:0,0:24,4 +chr15 23788490 . A G 0 PASS DP=81;GPV=1;SPV=8.5877e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:13,10:15,7 +chr15 24104211 . C T 0 PASS DP=61;GPV=1;SPV=0.00033318;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:11,7:9,3 +chr15 24381735 . T A 0 PASS DP=94;GPV=1;SPV=0.00011781;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:37,13:17,7:20,6 +chr15 24918765 . T C 0 PASS DP=37;GPV=1;SPV=0.32536;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,4:6,1:7,3 +chr15 25977620 . TTGTG T 0 PASS DP=40;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,7:7,4:3,3 +chr15 26037581 . C T 0 PASS DP=76;GPV=1;SPV=2.2745e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:8,5:11,8 +chr15 27997863 . A G 0 PASS DP=53;GPV=1;SPV=0.0025754;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:12,6:3,6 +chr15 28313192 . A ATT 0 PASS DP=60;GPV=1;SPV=0.00039787;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,12:15,9:6,3 +chr15 28340529 . A G 0 PASS DP=39;GPV=1;SPV=0.016632;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:15,5:0,1 +chr15 28488252 . C G 0 PASS DP=99;GPV=1;SPV=0.034622;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:29,7:18,1 +chr15 30211882 . G A 0 PASS DP=93;GPV=1;SPV=0.022897;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:24,3:13,6 +chr15 30524903 . G A 0 PASS DP=125;GPV=1;SPV=0.034072;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:51,14:31,6:20,8 +chr15 30747226 . C T 0 PASS DP=88;GPV=1;SPV=7.1199e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:17,8:8,8 +chr15 31019495 . G A 0 PASS DP=105;GPV=1;SPV=5.3546e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:19,6:16,5 +chr15 31704792 . T G 0 PASS DP=91;GPV=1;SPV=0.015927;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:22,9:12,5 +chr15 32737928 . C CAAAAAA 0 PASS DP=34;GPV=1;SPV=0.46076;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,5:8,4:7,1 +chr15 32777904 . C CATTT 0 PASS DP=34;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:2,2:15,2 +chr15 32994212 . C CCTCTCTCT 0 PASS DP=57;GPV=1;SPV=0.043916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,11:9,7:13,4 +chr15 33933524 . CAGAGAGAGAG C 0 PASS DP=65;GPV=1;SPV=0.044272;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:7,7:6,4:1,3 +chr15 34424470 . C A 0 PASS DP=61;GPV=1;SPV=0.023399;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:13,4:10,6 +chr15 34685910 . TTG T 0 PASS DP=77;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:7,5:4,2:3,3 +chr15 35083633 . G GGCTTCTATCAATGTTGTCCTTA 0 PASS DP=80;GPV=1;SPV=0.079262;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:46,6:18,3:28,3 +chr15 35732877 . C CAA 0 PASS DP=68;GPV=1;SPV=0.00083319;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,16:14,10:7,6 +chr15 36743179 . G A 0 PASS DP=99;GPV=1;SPV=1.843e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:29,23:14,13:15,10 +chr15 37695262 . T C 0 PASS DP=38;GPV=1;SPV=0.012757;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:4,4:6,7 +chr15 38266651 . C A 0 PASS DP=66;GPV=1;SPV=0.042491;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,7:9,1:10,6 +chr15 38269024 . C T 0 PASS DP=98;GPV=1;SPV=9.2124e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:16,9:10,8 +chr15 40839018 . T C 0 PASS DP=82;GPV=1;SPV=0.02675;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:27,3:13,3 +chr15 43537708 . G A 0 PASS DP=19;GPV=1;SPV=0.54545;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:2,1:5,1 +chr15 43628891 . C T 0 PASS DP=63;GPV=1;SPV=0.039873;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,3:13,1 +chr15 44540265 . ATATT A 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,2:9,4 +chr15 44772919 . G GTT 0 PASS DP=43;GPV=1;SPV=0.018778;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,10:4,8:1,2 +chr15 45070502 . C T 0 PASS DP=117;GPV=1;SPV=0.012262;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:61,8:32,5:29,3 +chr15 45082496 . C T 0 PASS DP=81;GPV=1;SPV=0.0087902;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:13,1:16,9 +chr15 46625108 . C T 0 PASS DP=105;GPV=1;SPV=5.2105e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:39,24:23,15:16,9 +chr15 47025527 . CAA C 0 PASS DP=57;GPV=1;SPV=0.0037333;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:17,11:14,8:3,3 +chr15 47903612 . A T 0 PASS DP=118;GPV=1;SPV=1.2618e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:41,29:19,18:22,11 +chr15 47989175 . C T 0 PASS DP=54;GPV=1;SPV=0.099494;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:13,1:14,3 +chr15 50085959 . ATATT A 0 PASS DP=32;GPV=1;SPV=0.046518;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,4:9,3 +chr15 51353734 . A C 0 PASS DP=24;GPV=1;SPV=0.00033652;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,8:1,6:2,2 +chr15 52964525 . GTTT G 0 PASS DP=39;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:7,6:5,5:2,1 +chr15 53187110 . C A 0 PASS DP=72;GPV=1;SPV=2.6047e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:13,9:10,12 +chr15 53650893 . G GTTT 0 PASS DP=43;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:9,7:5,1 +chr15 55089869 . G A 0 PASS DP=94;GPV=1;SPV=4.6867e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:13,9:14,12 +chr15 55363799 . C CTTT 0 PASS DP=26;GPV=1;SPV=0.037267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr15 55627492 . GT G 0 PASS DP=42;GPV=1;SPV=0.0094148;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,9:3,1 +chr15 56103129 . A AT 0 PASS DP=41;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,6:8,5:1,1 +chr15 58269300 . G A 0 PASS DP=72;GPV=1;SPV=4.2691e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,3:8,8 +chr15 58274244 . C CT 0 PASS DP=30;GPV=1;SPV=0.036896;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:6,8:4,1 +chr15 58787140 . C CT 0 PASS DP=34;GPV=1;SPV=0.01497;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:4,4:8,3 +chr15 59072450 . CTT C 0 PASS DP=31;GPV=1;SPV=0.017591;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,7:6,6:2,1 +chr15 60011899 . T C 0 PASS DP=78;GPV=1;SPV=8.3139e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,18:13,10:6,8 +chr15 61293962 . G A 0 PASS DP=40;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:12,3:10,1 +chr15 61650775 . CTT C 0 PASS DP=31;GPV=1;SPV=0.02039;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:9,3:2,4 +chr15 61856687 . CTT C 0 PASS DP=45;GPV=1;SPV=0.038233;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,5:5,2 +chr15 62710720 . CT C 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,3:7,2 +chr15 64343208 . A AACACACACACACACACACACACACACAC 0 PASS DP=26;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:3,2:5,2 +chr15 64510205 . C CT 0 PASS DP=43;GPV=1;SPV=0.046544;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:9,6:8,3 +chr15 65706489 . CACACACAT C 0 PASS DP=75;GPV=1;SPV=0.032215;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,9:18,5:10,4 +chr15 65831632 . C T 0 PASS DP=70;GPV=1;SPV=4.8683e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,9:11,4 +chr15 66993354 . GGAAGGAAGGAAGGAAA G 0 PASS DP=69;GPV=1;SPV=0.019687;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:19,9:6,3 +chr15 68050470 . T TATATAC 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,1:14,3 +chr15 68050503 . G T 0 PASS DP=36;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,5:8,2:11,3 +chr15 68263213 . A ATTTTTTTTTT 0 PASS DP=21;GPV=1;SPV=0.18447;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr15 69078432 . C CA 0 PASS DP=38;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,6:3,5:3,1 +chr15 69993326 . CAGAG C 0 PASS DP=46;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,4:11,3:1,1 +chr15 70398548 . G GGTGT 0 PASS DP=67;GPV=1;SPV=0.0012942;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:14,10:11,4 +chr15 71243781 . C CT 0 PASS DP=38;GPV=1;SPV=0.014712;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:7,6:2,2 +chr15 72003703 . C CA 0 PASS DP=59;GPV=1;SPV=0.022587;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,7:7,6:6,1 +chr15 72397082 . T C 0 PASS DP=61;GPV=1;SPV=0.10033;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:25,3:6,1 +chr15 74743217 . A G 0 PASS DP=50;GPV=1;SPV=0.024827;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:17,3:4,7 +chr15 74914348 . T C 0 PASS DP=74;GPV=1;SPV=0.040005;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:19,3:13,7 +chr15 75287685 . C T 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,3:2,1 +chr15 75822868 . A ACACACACACACGCACG 0 PASS DP=43;GPV=1;SPV=0.030957;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:10,2:7,3 +chr15 76466419 . CT C 0 PASS DP=20;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:0,3:5,1 +chr15 82321103 . G A 0 PASS DP=138;GPV=1;SPV=4.3683e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:59,20:24,6:35,14 +chr15 82345109 . A G 0 PASS DP=95;GPV=1;SPV=0.029553;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:11,4:32,1 +chr15 82367236 . C CAT 0 PASS DP=62;GPV=1;SPV=0.10169;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,2:17,3 +chr15 82382507 . C CGT 0 PASS DP=56;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,9:8,4:6,5 +chr15 84409726 . G A 0 PASS DP=105;GPV=1;SPV=0.044392;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:55,9:28,4:27,5 +chr15 85458138 . C CA 0 PASS DP=56;GPV=1;SPV=0.017221;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,4:8,1 +chr15 85841139 . A ATTTTT 0 PASS DP=36;GPV=1;SPV=0.0003221;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:2,11:0,5:2,6 +chr15 86475330 . A T 0 PASS DP=76;GPV=1;SPV=0.00014151;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:7,3:15,6 +chr15 86597882 . G T 0 PASS DP=74;GPV=1;SPV=2.0618e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:16,11:6,7 +chr15 86838941 . T TAAAA 0 PASS DP=32;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:5,3:6,2 +chr15 86940060 . CT C 0 PASS DP=24;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr15 87000260 . G T 0 PASS DP=40;GPV=1;SPV=0.026042;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:7,3:6,1 +chr15 87724250 . C CA 0 PASS DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:14,5:13,5 +chr15 92047592 . TA T 0 PASS DP=17;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,2:1,1:0,1 +chr15 92511469 . A G 0 PASS DP=82;GPV=1;SPV=5.4759e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:9,12:14,5 +chr15 93460381 . G GT 0 PASS DP=42;GPV=1;SPV=0.026469;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,7:9,5:5,2 +chr15 93790249 . G A 0 PASS DP=82;GPV=1;SPV=5.1342e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:16,5:15,10 +chr15 96682798 . T G 0 PASS DP=80;GPV=1;SPV=8.9663e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:12,12:13,8 +chr15 97626677 . T C 0 PASS DP=48;GPV=1;SPV=0.0012673;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:9,1:3,8 +chr15 97911574 . T A 0 PASS DP=65;GPV=1;SPV=0.031275;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,9:13,4:12,5 +chr15 98437651 . A AATGGATGGATGG 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:7,1:5,7 +chr15 99153623 . A C 0 PASS DP=92;GPV=1;SPV=7.7259e-10;SS=2;SSC=91;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:7,12:11,7 +chr15 99602653 . G GGTGTGTGT 0 PASS DP=29;GPV=1;SPV=0.023079;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,5:0,4:4,1 +chr15 100292452 . G A 0 PASS DP=60;GPV=1;SPV=1.1564e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,14:8,11:5,3 +chr15 100658178 . T TTGTGTGTG 0 PASS DP=57;GPV=1;SPV=0.0047133;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:4,3:10,8 +chr15 100909498 . C CTTCG 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:10,4:2,1 +chr15 101920402 . G A 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:9,2:11,2 +chr15 101961023 . C G 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:12,4:0,0 +chr16 494909 . G T 0 PASS DP=172;GPV=1;SPV=0.00042394;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:72,27:36,20:36,7 +chr16 900681 . ATG A 0 PASS DP=36;GPV=1;SPV=0.012681;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,9:6,1 +chr16 3378992 . C CTTT 0 PASS DP=31;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:6,2:3,4 +chr16 4232516 . AT A 0 PASS DP=66;GPV=1;SPV=0.010719;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:16,4:13,3 +chr16 4998004 . T C 0 PASS DP=54;GPV=1;SPV=0.075102;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,2:12,2 +chr16 5180418 . CA C 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:17,1:17,4 +chr16 5202775 . T G 0 PASS DP=29;GPV=1;SPV=0.024176;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,1:3,3 +chr16 6077684 . T TTTTATTTATTTATTTA 0 PASS DP=66;GPV=1;SPV=0.04992;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,7:13,4:14,3 +chr16 6315386 . G A 0 PASS DP=46;GPV=1;SPV=0.0059873;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:9,6:9,2 +chr16 6637411 . T A 0 PASS DP=18;GPV=1;SPV=0.34286;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,2:7,2:0,0 +chr16 6985832 . T TAAAAAAAAAA 0 PASS DP=48;GPV=1;SPV=0.048406;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:10,7:10,1 +chr16 7165410 . G A 0 PASS DP=38;GPV=1;SPV=0.20253;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,3:8,1 +chr16 7567242 . C CCTAT 0 PASS DP=54;GPV=1;SPV=0.030984;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,5:9,2:9,3 +chr16 8056147 . C T 0 PASS DP=96;GPV=1;SPV=1.308e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:29,20:13,7:16,13 +chr16 8111775 . TATATATAC T 0 PASS DP=29;GPV=1;SPV=0.13055;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:8,3:7,2 +chr16 9028587 . C CT 0 PASS DP=42;GPV=1;SPV=0.00080108;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:3,9:8,5 +chr16 9264919 . T TATATA 0 PASS DP=23;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:2,2:4,3 +chr16 9744591 . AT A 0 PASS DP=68;GPV=1;SPV=6.589e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:10,5:10,6 +chr16 9894592 . ATGGAC A 0 PASS DP=69;GPV=1;SPV=0.060567;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:13,1:18,3 +chr16 10372566 . A ATCTT 0 PASS DP=28;GPV=1;SPV=0.031056;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:0,0:7,4 +chr16 10730016 . T TAC 0 PASS DP=34;GPV=1;SPV=0.077477;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:5,4:3,2 +chr16 11251294 . G A 0 PASS DP=91;GPV=1;SPV=5.9061e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:18,10:15,8 +chr16 11515850 . G A 0 PASS DP=33;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,4:0,3:9,1 +chr16 11637880 . C CA 0 PASS DP=34;GPV=1;SPV=0.021584;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,3:3,1 +chr16 12063366 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.0059497;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:5,7:2,1 +chr16 13052959 . C CTTTTT 0 PASS DP=31;GPV=1;SPV=0.049808;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:5,2:6,2 +chr16 13469407 . AAG A 0 PASS DP=69;GPV=1;SPV=0.046654;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:20,2:4,3 +chr16 14766859 . A G 0 PASS DP=52;GPV=1;SPV=0.012947;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,2:6,3 +chr16 15114927 . AT A 0 PASS DP=49;GPV=1;SPV=0.029887;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,12:10,7:9,5 +chr16 15292837 . A ATATTAT 0 PASS DP=64;GPV=1;SPV=0.042577;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,1:14,4 +chr16 15379440 . A G 0 PASS DP=75;GPV=1;SPV=0.0036034;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:13,8:17,10 +chr16 16156942 . C CAA 0 PASS DP=38;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,10:4,9:2,1 +chr16 16427345 . C G 0 PASS DP=114;GPV=1;SPV=0.022435;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:51,17:26,8:25,9 +chr16 16439040 . A G 0 PASS DP=40;GPV=1;SPV=0.064595;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:8,3:11,2 +chr16 16629946 . CTTTTTTTTTTTTTTT C 0 PASS DP=42;GPV=1;SPV=0.20218;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:15,3:9,1 +chr16 16808114 . C CA 0 PASS DP=49;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,5:17,3:3,2 +chr16 16836537 . C T 0 PASS DP=39;GPV=1;SPV=0.0058774;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:3,6:9,5 +chr16 17536361 . C T 0 PASS DP=86;GPV=1;SPV=1.5551e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:15,10:16,6 +chr16 18075713 . A T 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,3:19,1 +chr16 18201427 . G A 0 PASS DP=72;GPV=1;SPV=0.050895;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:12,1:19,3 +chr16 18528014 . T G 0 PASS DP=70;GPV=1;SPV=0.022438;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:12,5:15,2 +chr16 18963503 . G GTA 0 PASS DP=59;GPV=1;SPV=0.16992;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:28,2:9,3 +chr16 19141438 . A ATATATATATATATTTTTT 0 PASS DP=52;GPV=1;SPV=0.024869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:7,3:6,2 +chr16 19438407 . AAG A 0 PASS DP=37;GPV=1;SPV=0.010948;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:3,7:9,4 +chr16 19623817 . G A 0 PASS DP=35;GPV=1;SPV=0.031056;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,4:3,3:4,1 +chr16 22534576 . G T 0 PASS DP=35;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,3:8,2 +chr16 22562538 . G A 0 PASS DP=124;GPV=1;SPV=0.0039917;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:46,18:18,6:28,12 +chr16 22584112 . AAGAG A 0 PASS DP=49;GPV=1;SPV=0.024122;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,6:15,3:6,3 +chr16 22868405 . CA C 0 PASS DP=44;GPV=1;SPV=0.031408;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr16 23257175 . C T 0 PASS DP=54;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:8,4:6,2:2,2 +chr16 23783168 . AT A 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:12,3:6,1 +chr16 24168715 . TA T 0 PASS DP=41;GPV=1;SPV=0.021576;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,4:5,5 +chr16 24237363 . C CTTTCT 0 PASS DP=21;GPV=1;SPV=0.0031469;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,7:0,4:2,3 +chr16 24380998 . C CAA 0 PASS DP=29;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,8:3,7:2,1 +chr16 25756154 . GCACA G 0 PASS DP=53;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:4,5:3,3:1,2 +chr16 28866800 . G A 0 PASS DP=80;GPV=1;SPV=0.0002546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:14,6:17,6 +chr16 29053135 . C G 0 PASS DP=54;GPV=1;SPV=0.064743;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:1,0:23,4 +chr16 29254389 . G A 0 PASS DP=66;GPV=1;SPV=0.00014241;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,6:10,4 +chr16 29713576 . A T 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:13,3:1,1 +chr16 29961904 . T G 0 PASS DP=97;GPV=1;SPV=2.5409e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:34,18:24,10:10,8 +chr16 30032642 . GT G 0 PASS DP=46;GPV=1;SPV=0.028437;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,9:14,5:8,4 +chr16 30169000 . T TG 0 PASS DP=79;GPV=1;SPV=0.018965;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:18,4:17,2 +chr16 30250297 . T C 0 PASS DP=33;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:5,3:10,1 +chr16 30297471 . CT C 0 PASS DP=36;GPV=1;SPV=0.0033983;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:5,7:4,2 +chr16 31959233 . C T 0 PASS DP=98;GPV=1;SPV=0.034474;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:51,6:22,4:29,2 +chr16 32014442 . T TA 0 PASS DP=82;GPV=1;SPV=0.0001118;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,10:9,3:12,7 +chr16 32071960 . A G 0 PASS DP=61;GPV=1;SPV=0.011057;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:11,1:10,4 +chr16 32082635 . G A 0 PASS DP=140;GPV=1;SPV=0.012801;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:62,11:52,10:10,1 +chr16 32094230 . C T 0 PASS DP=196;GPV=1;SPV=0.032481;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:86,12:51,3:35,9 +chr16 32154617 . T C 0 PASS DP=76;GPV=1;SPV=0.046104;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,3:12,6 +chr16 32293572 . TTTTTTA T 0 PASS DP=110;GPV=1;SPV=0.026445;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:54,9:24,4:30,5 +chr16 32298678 . G C 0 PASS DP=53;GPV=1;SPV=0.025505;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:6,4:15,4 +chr16 32805762 . TCTTTC T 0 PASS DP=126;GPV=1;SPV=0.012815;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:55,17:27,4:28,13 +chr16 32838152 . G T 0 PASS DP=561;GPV=1;SPV=0.036478;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:281:245,36:96,14:149,22 +chr16 32839423 . T C 0 PASS DP=222;GPV=1;SPV=0.048544;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:95,17:34,7:61,10 +chr16 32840065 . G A 0 PASS DP=504;GPV=1;SPV=0.0021163;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:222,47:111,28:111,19 +chr16 33021244 . T C 0 PASS DP=99;GPV=1;SPV=0.012566;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:39,10:19,7:20,3 +chr16 33029848 . A C 0 PASS DP=149;GPV=1;SPV=0.014739;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:53,17:31,6:22,11 +chr16 33035433 . T A 0 PASS DP=232;GPV=1;SPV=0.023528;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:109,21:71,14:38,7 +chr16 33040372 . T G 0 PASS DP=189;GPV=1;SPV=0.045845;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:74,17:30,6:44,11 +chr16 33042087 . T C 0 PASS DP=141;GPV=1;SPV=0.035068;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:86:67,19:40,13:27,6 +chr16 33602215 . C CTAG 0 PASS DP=225;GPV=1;SPV=0.034984;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:94,21:55,17:39,4 +chr16 33718663 . CAAT C 0 PASS DP=148;GPV=1;SPV=0.013983;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:59,18:34,7:25,11 +chr16 34133309 . G GA 0 PASS DP=45;GPV=1;SPV=0.0018044;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:15,9:2,3 +chr16 34575351 . C T 0 PASS DP=25;GPV=1;SPV=0.033948;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,8:4,5:3,3 +chr16 34790316 . A T 0 PASS DP=130;GPV=1;SPV=0.011042;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:58,9:30,6:28,3 +chr16 35307190 . G A 0 PASS DP=99;GPV=1;SPV=1.2853e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,24:13,16:16,8 +chr16 35619905 . C T 0 PASS DP=76;GPV=1;SPV=4.8556e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:15,7:10,11 +chr16 36094020 . C A 0 PASS DP=164;GPV=1;SPV=0.01117;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:68,14:27,5:41,9 +chr16 36098635 . C T 0 PASS DP=413;GPV=1;SPV=0.04071;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:180,30:106,19:74,11 +chr16 36382885 . T C 0 PASS DP=39;GPV=1;SPV=0.037328;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:13,6:1,1 +chr16 36470976 . T G 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr16 37816259 . A T 0 PASS DP=39;GPV=1;SPV=0.058905;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:14,2:2,2 +chr16 47538848 . G A 0 PASS DP=91;GPV=1;SPV=5.1236e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:9,9:18,14 +chr16 50126791 . C G 0 PASS DP=66;GPV=1;SPV=4.4085e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:15,10:8,6 +chr16 51301860 . G T 0 PASS DP=87;GPV=1;SPV=5.7568e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:11,8:17,7 +chr16 52536627 . C CTA 0 PASS DP=25;GPV=1;SPV=0.022876;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,4:1,3:3,1 +chr16 52700844 . A T 0 PASS DP=86;GPV=1;SPV=4.2987e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,8:12,7 +chr16 52837994 . G A 0 PASS DP=81;GPV=1;SPV=5.286e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,13:13,6 +chr16 52929139 . G A 0 PASS DP=68;GPV=1;SPV=2.443e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:14,19:6,11:8,8 +chr16 53017812 . A T 0 PASS DP=66;GPV=1;SPV=0.1025;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,4:15,1:6,3 +chr16 54127403 . GGTT G 0 PASS DP=29;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,10:7,8:0,2 +chr16 54681096 . C T 0 PASS DP=47;GPV=1;SPV=0.034636;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:14,2:6,3 +chr16 55721867 . GT G 0 PASS DP=92;GPV=1;SPV=0.041747;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:20,7:17,3 +chr16 56568213 . GAGAAAGAAAGAAAGAA G 0 PASS DP=36;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:7,6:3,1 +chr16 56740769 . G A 0 PASS DP=152;GPV=1;SPV=0.0026422;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:69,23:39,8:30,15 +chr16 57230005 . C CT 0 PASS DP=28;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,2:2,2 +chr16 57832990 . C T 0 PASS DP=79;GPV=1;SPV=7.7207e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:9,6:17,10 +chr16 58817716 . GT G 0 PASS DP=35;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:7,2:4,2 +chr16 59697172 . G C 0 PASS DP=73;GPV=1;SPV=0.015836;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,3:11,5 +chr16 60296883 . G A 0 PASS DP=50;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,4:5,3:7,1 +chr16 60739479 . G A 0 PASS DP=81;GPV=1;SPV=0.0037019;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:15,8:17,7 +chr16 61460072 . C T 0 PASS DP=87;GPV=1;SPV=0.0126;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:22,4:19,3 +chr16 61760283 . T TTTTA 0 PASS DP=86;GPV=1;SPV=0.0073467;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:25,10:10,8 +chr16 63658223 . C CAA 0 PASS DP=34;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,4:7,1 +chr16 64432980 . C CT 0 PASS DP=30;GPV=1;SPV=0.038406;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:6,5:2,1 +chr16 64520362 . GT G 0 PASS DP=43;GPV=1;SPV=0.016106;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,3:5,2 +chr16 65283797 . A T 0 PASS DP=61;GPV=1;SPV=0.10766;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,4:13,3:6,1 +chr16 65576409 . C T 0 PASS DP=90;GPV=1;SPV=5.225e-09;SS=2;SSC=82;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:12,16:11,7 +chr16 65690709 . T C 0 PASS DP=49;GPV=1;SPV=0.042336;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:11,2:11,3 +chr16 68020873 . A G 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,3:7,3 +chr16 68201820 . CGATGGTGCATGCCTGTAGTCCCAGCTACTTGGGAGGCTGGCATAGGAGA C 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:13,3:7,1 +chr16 68283590 . AAG A 0 PASS DP=86;GPV=1;SPV=0.02764;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:38,5:19,1:19,4 +chr16 68745593 . G A 0 PASS DP=37;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:12,2:8,3 +chr16 69738629 . GT G 0 PASS DP=60;GPV=1;SPV=0.020833;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:15,8:12,3:3,5 +chr16 70853896 . T C 0 PASS DP=76;GPV=1;SPV=0.045291;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:16,2:10,6 +chr16 71030715 . G C 0 PASS DP=124;GPV=1;SPV=0.0025201;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:48,18:27,7:21,11 +chr16 71048938 . G A 0 PASS DP=70;GPV=1;SPV=0.026582;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:17,7:16,3 +chr16 71061490 . G A 0 PASS DP=110;GPV=1;SPV=0.041014;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:50,12:29,6:21,6 +chr16 71124265 . C T 0 PASS DP=86;GPV=1;SPV=4.4803e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:11,11:11,8 +chr16 71286445 . G A 0 PASS DP=68;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:16,5:11,3:5,2 +chr16 71380292 . C T 0 PASS DP=17;GPV=1;SPV=0.025058;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,6:1,5:0,1 +chr16 71768500 . C CAAAAAAAA 0 PASS DP=39;GPV=1;SPV=0.10482;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,6:6,4:6,2 +chr16 72009509 . CA C 0 PASS DP=26;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:2,4:7,1 +chr16 73447373 . C T 0 PASS DP=90;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:25,1:17,5 +chr16 73826292 . G A 0 PASS DP=65;GPV=1;SPV=0.015276;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:11,6:12,1 +chr16 74084559 . G T 0 PASS DP=86;GPV=1;SPV=0.0014624;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:9,3:28,7 +chr16 74181019 . GAA G 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:19,2:4,2 +chr16 74181028 . A G 0 PASS DP=52;GPV=1;SPV=0.10123;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:20,2:6,2 +chr16 74358404 . CA C 0 PASS DP=64;GPV=1;SPV=0.039873;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:17,1:8,3 +chr16 74408435 . C T 0 PASS DP=156;GPV=1;SPV=0.023961;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:64,14:37,6:27,8 +chr16 74412400 . G T 0 PASS DP=266;GPV=1;SPV=0.0014102;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:139:106,33:48,15:58,18 +chr16 74425829 . TA T 0 PASS DP=91;GPV=1;SPV=0.025351;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,13:20,3:18,10 +chr16 75137461 . C CTTTT 0 PASS DP=24;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,9:3,8:1,1 +chr16 75929766 . C CA 0 PASS DP=45;GPV=1;SPV=0.068336;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:13,4:8,1 +chr16 76916277 . GTGTA G 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4 +chr16 76929939 . A ATT 0 PASS DP=40;GPV=1;SPV=0.0013175;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:2,15:2,8:0,7 +chr16 77349524 . T TA 0 PASS DP=48;GPV=1;SPV=0.011322;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,4:6,5 +chr16 78490133 . A AT 0 PASS DP=71;GPV=1;SPV=0.084652;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,2:13,2 +chr16 78723554 . CTTCTT C 0 PASS DP=63;GPV=1;SPV=0.0061323;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,9:6,5:22,4 +chr16 80089327 . T C 0 PASS DP=42;GPV=1;SPV=0.014502;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:7,3:4,5 +chr16 82594630 . C T 0 PASS DP=77;GPV=1;SPV=2.7747e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:10,8:15,11 +chr16 82761021 . T C 0 PASS DP=35;GPV=1;SPV=0.0012781;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,13:4,11:4,2 +chr16 82931506 . T TC 0 PASS DP=71;GPV=1;SPV=0.0010847;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,12:18,8:11,4 +chr16 83132455 . T C 0 PASS DP=21;GPV=1;SPV=0.11905;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,0:2,4 +chr16 83400122 . G GT 0 PASS DP=72;GPV=1;SPV=9.4663e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:10,7:13,4 +chr16 83564413 . TTTG T 0 PASS DP=66;GPV=1;SPV=0.091638;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:12,1:21,3 +chr16 84536779 . T TTTTTTTTTTTG 0 PASS DP=32;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:8,11:1,3:7,8 +chr16 87038636 . GGGAGGGAGGGAGGGAAGGAA G 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr16 88236683 . A G 0 PASS DP=93;GPV=1;SPV=0.038032;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:49,6:28,1:21,5 +chr16 88501640 . T G 0 PASS DP=73;GPV=1;SPV=0.021613;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:16,1:14,4 +chr16 89325473 . A T 0 PASS DP=68;GPV=1;SPV=0.063124;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:13,4:22,1 +chr16 90180905 . A G 0 PASS DP=31;GPV=1;SPV=0.045822;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:4,3:7,7 +chr17 307247 . C T 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,2:2,1 +chr17 672109 . G GACACACACAC 0 PASS DP=40;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,9:4,7:2,2 +chr17 768795 . G A 0 PASS DP=33;GPV=1;SPV=0.044477;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:11,3:1,1 +chr17 963214 . G GAC 0 PASS DP=70;GPV=1;SPV=7.5053e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,7:11,6 +chr17 1427030 . CAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=32;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:8,3:5,1 +chr17 1775825 . C T 0 PASS DP=87;GPV=1;SPV=1.8106e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:13,8:10,14 +chr17 2623261 . CT C 0 PASS DP=36;GPV=1;SPV=0.035742;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:8,4:9,4 +chr17 3031324 . G GT 0 PASS DP=127;GPV=1;SPV=0.001535;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:52,18:22,6:30,12 +chr17 3061221 . T C 0 PASS DP=31;GPV=1;SPV=0.025708;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:5,4:6,1 +chr17 4027594 . C CTTT 0 PASS DP=39;GPV=1;SPV=0.18176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr17 4280336 . CTTTTT C 0 PASS DP=30;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,4:8,3:3,1 +chr17 4414140 . AATGTGT A 0 PASS DP=49;GPV=1;SPV=0.035087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,3:8,7 +chr17 4567821 . CTTT C 0 PASS DP=25;GPV=1;SPV=0.0098833;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,9:1,4:2,5 +chr17 4667996 . A G 0 PASS DP=83;GPV=1;SPV=0.015695;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:18,6:16,5 +chr17 5910630 . CAAAA C 0 PASS DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:6,5:6,1 +chr17 6015119 . TA T 0 PASS DP=54;GPV=1;SPV=0.18206;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:19,4:15,1 +chr17 6516563 . C CA 0 PASS DP=46;GPV=1;SPV=0.011374;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,10:4,7:1,3 +chr17 6987008 . C CT 0 PASS DP=22;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:5,4:3,1 +chr17 7302655 . T TG 0 PASS DP=36;GPV=1;SPV=0.024337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,9:12,8:0,1 +chr17 7609931 . T TATAC 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,2:13,2 +chr17 8585286 . G GTATATATATATATATATA 0 PASS DP=20;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,1:4,3 +chr17 8685358 . A G 0 PASS DP=23;GPV=1;SPV=0.032869;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,3:0,1 +chr17 10428686 . C CA 0 PASS DP=83;GPV=1;SPV=3.9497e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,13:15,5:13,8 +chr17 10432289 . C T 0 PASS DP=101;GPV=1;SPV=2.0936e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:15,9:18,7 +chr17 11277284 . A T 0 PASS DP=63;GPV=1;SPV=0.1958;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:5,5:1,3:4,2 +chr17 11459218 . CA C 0 PASS DP=48;GPV=1;SPV=0.0042808;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,15:11,13:6,2 +chr17 11954769 . T TA 0 PASS DP=56;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:15,2:12,2 +chr17 12351263 . G A 0 PASS DP=19;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,2:4,1:3,1 +chr17 12410555 . GT G 0 PASS DP=29;GPV=1;SPV=0.010837;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:4,4:4,1 +chr17 12828028 . C CA 0 PASS DP=43;GPV=1;SPV=0.037417;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:6,5:4,1 +chr17 13045725 . GA G 0 PASS DP=79;GPV=1;SPV=0.00055029;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,6:15,5 +chr17 13396788 . C T 0 PASS DP=60;GPV=1;SPV=6.7231e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:5,8:14,5 +chr17 14186986 . T G 0 PASS DP=84;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:4,3:2,2:2,1 +chr17 15585912 . A G 0 PASS DP=87;GPV=1;SPV=0.041058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,2:16,2 +chr17 15730704 . T TGTGCGCGC 0 PASS DP=50;GPV=1;SPV=0.052652;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,6:11,5:14,1 +chr17 17375416 . T C 0 PASS DP=92;GPV=1;SPV=2.0418e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:9,8:12,9 +chr17 17386164 . A AGAGAGAGAG 0 PASS DP=61;GPV=1;SPV=0.085668;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:11,2:16,2 +chr17 18305475 . A AACACACATAC 0 PASS DP=60;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:19,17:8,10:11,7 +chr17 19820053 . A T 0 PASS DP=88;GPV=1;SPV=0.082705;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,5:16,2:12,3 +chr17 20470600 . A G 0 PASS DP=52;GPV=1;SPV=0.014154;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,3:6,5 +chr17 20555213 . T C 0 PASS DP=121;GPV=1;SPV=0.019395;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:24,2:22,8 +chr17 20608791 . C CTT 0 PASS DP=54;GPV=1;SPV=0.034267;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:19,10:10,2:9,8 +chr17 21056611 . A G 0 PASS DP=62;GPV=1;SPV=0.058259;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:11,2:20,3 +chr17 21344228 . C T 0 PASS DP=131;GPV=1;SPV=0.029956;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:26,12:25,3 +chr17 21410094 . G T 0 PASS DP=109;GPV=1;SPV=0.016322;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:21,3:23,2 +chr17 21512963 . GCTGTCCCTGGCCTAGGGCGCTCCTCCCCAAATTTTCCAAGGCTTCTTTTGGCTGCCAGGGAT G 0 PASS DP=59;GPV=1;SPV=0.045726;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:11,5:14,2 +chr17 21582606 . T G 0 PASS DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:16,1:13,3 +chr17 21682302 . C A 0 PASS DP=111;GPV=1;SPV=0.0059749;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:48,7:23,5:25,2 +chr17 21730180 . C CTTT 0 PASS DP=90;GPV=1;SPV=0.035679;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:14,3:20,9 +chr17 21839938 . C T 0 PASS DP=111;GPV=1;SPV=0.035224;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:27,2:18,4 +chr17 22133455 . A C 0 PASS DP=276;GPV=1;SPV=0.038188;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:133,17:67,7:66,10 +chr17 22834926 . A G 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr17 22839887 . G C 0 PASS DP=169;GPV=1;SPV=0.044058;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:82,17:37,7:45,10 +chr17 22869952 . A G 0 PASS DP=88;GPV=1;SPV=0.017284;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:23,3:17,3 +chr17 22881965 . G C 0 PASS DP=123;GPV=1;SPV=0.011784;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:61,11:45,4:16,7 +chr17 22919047 . A G 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:15,4:1,0 +chr17 22948887 . C G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr17 22957215 . C A 0 PASS DP=68;GPV=1;SPV=0.045335;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:11,4:17,5 +chr17 23070454 . T C 0 PASS DP=20;GPV=1;SPV=0.051084;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:1,3:6,2 +chr17 23090370 . C A 0 PASS DP=24;GPV=1;SPV=0.17128;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:0,0:12,4 +chr17 26625487 . A G 0 PASS DP=149;GPV=1;SPV=0.017973;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:72,9:33,2:39,7 +chr17 26742703 . T C 0 PASS DP=207;GPV=1;SPV=0.0038604;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:107:85,15:41,10:44,5 +chr17 26752099 . A G 0 PASS DP=326;GPV=1;SPV=0.044761;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:186:159,27:34,7:125,20 +chr17 26777277 . A G 0 PASS DP=158;GPV=1;SPV=0.036831;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:64,9:30,3:34,6 +chr17 26777345 . GT G 0 PASS DP=208;GPV=1;SPV=0.030216;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:102:86,16:42,5:44,11 +chr17 26777377 . G A 0 PASS DP=243;GPV=1;SPV=0.031422;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:102,21:44,8:58,13 +chr17 27001136 . C CCTT 0 PASS DP=97;GPV=1;SPV=0.03904;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:41,11:22,5:19,6 +chr17 27055172 . CA C 0 PASS DP=56;GPV=1;SPV=0.025784;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,7:14,6:4,1 +chr17 29380622 . A C 0 PASS DP=94;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:4,3:0,2:4,1 +chr17 30980186 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr17 31563409 . C CT 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:2,1:3,6 +chr17 32094600 . GA G 0 PASS DP=53;GPV=1;SPV=0.082705;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:19,3:9,2 +chr17 32697643 . A T 0 PASS DP=84;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:44:0,3:0,1:0,2 +chr17 34508057 . AGAGAGAGAAAGGAAAG A 0 PASS DP=58;GPV=1;SPV=0.12341;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:27,3:4,1 +chr17 36714264 . C CTT 0 PASS DP=37;GPV=1;SPV=0.19543;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,6:13,3:6,3 +chr17 37100630 . C CA 0 PASS DP=69;GPV=1;SPV=0.001025;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,10:17,9:9,1 +chr17 37902894 . A G 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr17 39025970 . AG A 0 PASS DP=43;GPV=1;SPV=0.14221;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:15,2:8,2 +chr17 39802221 . CA C 0 PASS DP=35;GPV=1;SPV=0.12905;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:11,3:6,1 +chr17 39842058 . AAC A 0 PASS DP=47;GPV=1;SPV=0.034106;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,9:3,5:8,4 +chr17 39885207 . G GT 0 PASS DP=63;GPV=1;SPV=0.0074853;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,11:15,5:5,6 +chr17 42438009 . T TG 0 PASS DP=43;GPV=1;SPV=0.0025185;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:6,7:4,5 +chr17 43696346 . TC T 0 PASS DP=100;GPV=1;SPV=4.7646e-09;SS=2;SSC=83;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:30,29:21,13:9,16 +chr17 45218112 . TTGTTTTTG T 0 PASS DP=36;GPV=1;SPV=0.020557;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:4,2:6,4 +chr17 45598064 . T A 0 PASS DP=45;GPV=1;SPV=0.04484;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,6:8,5:5,1 +chr17 45612517 . CTTT C 0 PASS DP=54;GPV=1;SPV=0.012526;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,8:10,7:9,1 +chr17 46230687 . A G 0 PASS DP=50;GPV=1;SPV=0.027339;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:11,7:11,5 +chr17 46257213 . G A 0 PASS DP=114;GPV=1;SPV=0.033172;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:58,9:28,4:30,5 +chr17 46259199 . CAACA C 0 PASS DP=120;GPV=1;SPV=0.018868;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:40,6:11,9 +chr17 46688854 . A T 0 PASS DP=25;GPV=1;SPV=0.0096894;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:6,5:1,1 +chr17 47000062 . AT A 0 PASS DP=51;GPV=1;SPV=0.019067;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,6:8,4:10,2 +chr17 47169645 . C CA 0 PASS DP=48;GPV=1;SPV=0.035086;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:12,2:10,4 +chr17 47751895 . T A 0 PASS DP=78;GPV=1;SPV=4.6734e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,23:13,9:11,14 +chr17 47889622 . C CT 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:5,7:6,1 +chr17 49083686 . T G 0 PASS DP=67;GPV=1;SPV=0.00077962;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:15,9:8,5:7,4 +chr17 49154021 . T G 0 PASS DP=82;GPV=1;SPV=0.0024191;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:17,7:18,2 +chr17 49635632 . C CT 0 PASS DP=35;GPV=1;SPV=0.0012607;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,9:6,8:3,1 +chr17 50108261 . G A 0 PASS DP=96;GPV=1;SPV=0.00025621;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:17,6:20,5 +chr17 51010568 . GA G 0 PASS DP=55;GPV=1;SPV=0.01018;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,11:7,9:11,2 +chr17 51983874 . G A 0 PASS DP=73;GPV=1;SPV=1.6283e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,8:10,9 +chr17 52079849 . C T 0 PASS DP=89;GPV=1;SPV=2.2039e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:18,10:10,12 +chr17 52307276 . C T 0 PASS DP=82;GPV=1;SPV=3.7879e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:14,12:11,9 +chr17 52941175 . T G 0 PASS DP=96;GPV=1;SPV=1.3599e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:33,19:17,10:16,9 +chr17 53736331 . A T 0 PASS DP=78;GPV=1;SPV=0.002624;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:17,6:14,2 +chr17 57062212 . T G 0 PASS DP=51;GPV=1;SPV=0.034267;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,10:2,3:17,7 +chr17 57884192 . CTT C 0 PASS DP=26;GPV=1;SPV=0.029565;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,5:2,2 +chr17 58502158 . T A 0 PASS DP=69;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:7,4:6,3:1,1 +chr17 59999606 . G C 0 PASS DP=53;GPV=1;SPV=0.037566;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:7,2:11,6 +chr17 62021134 . C A 0 PASS DP=120;GPV=1;SPV=0.018274;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:53,8:34,3:19,5 +chr17 62316628 . C CAAA 0 PASS DP=38;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:5,5:7,1 +chr17 62457987 . G A 0 PASS DP=91;GPV=1;SPV=0.027098;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:16,6:22,1 +chr17 64048951 . G A 0 PASS DP=90;GPV=1;SPV=8.6716e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:14,5:15,9 +chr17 64888377 . G A 0 PASS DP=86;GPV=1;SPV=0.039749;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:17,3:16,9 +chr17 64916942 . CAA C 0 PASS DP=82;GPV=1;SPV=0.033333;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:26,8:6,3 +chr17 65346040 . CA C 0 PASS DP=49;GPV=1;SPV=0.008934;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,7:16,2:3,5 +chr17 65639836 . C CT 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:9,4:5,1 +chr17 67300355 . C T 0 PASS DP=79;GPV=1;SPV=0.075976;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:28,2:15,3 +chr17 67300610 . G A 0 PASS DP=81;GPV=1;SPV=8.6693e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:9,10:12,9 +chr17 69177955 . CA C 0 PASS DP=23;GPV=1;SPV=0.055138;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:5,3:2,1 +chr17 69361949 . CCCTT C 0 PASS DP=36;GPV=1;SPV=0.019565;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:1,3:7,2 +chr17 69422124 . A AT 0 PASS DP=39;GPV=1;SPV=0.023277;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:12,6:1,3 +chr17 69562661 . CTTTTTTTTTTTTTTTTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.090909;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,6:1,5:2,1 +chr17 69622108 . T C 0 PASS DP=87;GPV=1;SPV=7.0937e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:26,24:15,14:11,10 +chr17 70408174 . C T 0 PASS DP=88;GPV=1;SPV=0.021074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:45,7:19,1:26,6 +chr17 70858401 . A G 0 PASS DP=77;GPV=1;SPV=0.12392;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,4:24,3:10,1 +chr17 71150579 . C CT 0 PASS DP=50;GPV=1;SPV=0.008646;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,8:7,6:6,2 +chr17 71338884 . C G 0 PASS DP=40;GPV=1;SPV=0.0094041;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:4,2:8,3 +chr17 71338888 . C CT 0 PASS DP=41;GPV=1;SPV=0.020689;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:5,2:10,3 +chr17 71338895 . T TC 0 PASS DP=45;GPV=1;SPV=0.0091605;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:7,2:9,4 +chr17 71365860 . C T 0 PASS DP=52;GPV=1;SPV=0.037596;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,7:4,4:6,3 +chr17 71584822 . G A 0 PASS DP=40;GPV=1;SPV=0.012101;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:4,4:10,8 +chr17 71720755 . A T 0 PASS DP=86;GPV=1;SPV=0.0084993;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:18,4:23,4 +chr17 73296419 . A C 0 PASS DP=71;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:7,2:3,1:4,1 +chr17 73635627 . G A 0 PASS DP=79;GPV=1;SPV=0.00274;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:34,9:16,3:18,6 +chr17 73749472 . TGAA T 0 PASS DP=56;GPV=1;SPV=0.047242;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:13,4:12,4 +chr17 74600273 . C T 0 PASS DP=71;GPV=1;SPV=0.013139;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,5:15,1:6,4 +chr17 74733466 . GGA G 0 PASS DP=39;GPV=1;SPV=0.011574;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,4:5,3 +chr17 74818759 . G T 0 PASS DP=119;GPV=1;SPV=4.7009e-10;SS=2;SSC=93;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:37,32:18,15:19,17 +chr17 75269548 . CTTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:9,2:4,2 +chr17 75674711 . T G 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2 +chr17 75687919 . T G 0 PASS DP=65;GPV=1;SPV=1.2874e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,22:7,12:11,10 +chr17 76388585 . C A 0 PASS DP=23;GPV=1;SPV=0.038248;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,1:7,4 +chr17 77238107 . G GTT 0 PASS DP=74;GPV=1;SPV=0.00041739;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:23,16:16,12:7,4 +chr17 77334421 . CA C 0 PASS DP=56;GPV=1;SPV=0.037837;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:9,7:13,3 +chr17 77376672 . G A 0 PASS DP=101;GPV=1;SPV=0.016064;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:26,4:20,2 +chr17 78551146 . C G 0 PASS DP=94;GPV=1;SPV=7.2955e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:33,16:15,11:18,5 +chr17 79746195 . TAAAAAAAAAAAAAAAAAAAAAA T 0 PASS DP=27;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:4,5:6,1 +chr17 80024394 . GAC G 0 PASS DP=75;GPV=1;SPV=0.04045;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:16,3:23,3 +chr17 80889970 . C T 0 PASS DP=27;GPV=1;SPV=0.0077803;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:3,4:5,5 +chr17 81425680 . G GGTT 0 PASS DP=29;GPV=1;SPV=0.1893;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:8,2:7,2 +chr17 82905817 . C T 0 PASS DP=83;GPV=1;SPV=0.036355;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:24,5:12,2 +chr17 82958958 . GT G 0 PASS DP=36;GPV=1;SPV=0.075059;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:8,1:9,5 +chr18 83504 . G C 0 PASS DP=96;GPV=1;SPV=0.049419;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:23,5:18,1 +chr18 83870 . G A 0 PASS DP=100;GPV=1;SPV=0.02166;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:40,9:24,3:16,6 +chr18 1377693 . T C 0 PASS DP=49;GPV=1;SPV=0.074732;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:11,4:14,1 +chr18 1962813 . A ATAC 0 PASS DP=28;GPV=1;SPV=0.040384;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,9:4,2:5,7 +chr18 2596677 . T C 0 PASS DP=89;GPV=1;SPV=3.9778e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:34,24:16,11:18,13 +chr18 3461843 . A ATTTTTTTTT 0 PASS DP=56;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:8,3:12,6 +chr18 3680788 . C CAA 0 PASS DP=59;GPV=1;SPV=0.012955;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:17,11:10,9:7,2 +chr18 4004943 . C T 0 PASS DP=80;GPV=1;SPV=0.046334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,6:12,1:13,5 +chr18 4548656 . G A 0 PASS DP=77;GPV=1;SPV=0.0017478;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,7:17,3 +chr18 4869281 . A C 0 PASS DP=78;GPV=1;SPV=3.542e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:13,8:10,7 +chr18 6090790 . A ATT 0 PASS DP=49;GPV=1;SPV=0.010994;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,3:5,7 +chr18 6634495 . A T 0 PASS DP=85;GPV=1;SPV=3.3115e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:18,9:7,10 +chr18 7297782 . GTTGAACAGCC G 0 PASS DP=86;GPV=1;SPV=3.6769e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:17,10:14,4 +chr18 7446124 . A ATTT 0 PASS DP=44;GPV=1;SPV=0.01473;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:11,9:5,6:6,3 +chr18 7960482 . C T 0 PASS DP=54;GPV=1;SPV=0.033247;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,5:6,1:5,4 +chr18 8875363 . T C 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:3,1:9,4 +chr18 9369140 . TA T 0 PASS DP=75;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:5,4:0,2:5,2 +chr18 9645519 . C T 0 PASS DP=72;GPV=1;SPV=1.7753e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:14,7:6,9 +chr18 10567305 . C CTTTTT 0 PASS DP=19;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,1:2,3 +chr18 10607078 . T A 0 PASS DP=108;GPV=1;SPV=0.0057987;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:30,4:16,6 +chr18 10995082 . A AAAAAAAAAAGAAAG 0 PASS DP=59;GPV=1;SPV=0.023702;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,9:9,6:8,3 +chr18 11018382 . CGTGT C 0 PASS DP=56;GPV=1;SPV=0.0075692;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:11,8:10,7:1,1 +chr18 12270894 . CTT C 0 PASS DP=30;GPV=1;SPV=0.067669;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:5,3:3,1 +chr18 12788432 . C CT 0 PASS DP=22;GPV=1;SPV=0.074661;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:3,4:3,2 +chr18 13046829 . C CT 0 PASS DP=51;GPV=1;SPV=0.0041493;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,11:6,5:8,6 +chr18 14674558 . C G 0 PASS DP=76;GPV=1;SPV=0.027169;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:16,4:17,1 +chr18 15393853 . TA T 0 PASS DP=83;GPV=1;SPV=0.0382;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,2:15,5 +chr18 15405554 . C T 0 PASS DP=289;GPV=1;SPV=0.0068706;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:133,16:46,5:87,11 +chr18 15407537 . C G 0 PASS DP=640;GPV=1;SPV=0.0073785;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:347:299,48:143,22:156,26 +chr18 15407609 . T C 0 PASS DP=598;GPV=1;SPV=0.023319;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:310:266,44:134,18:132,26 +chr18 15476491 . T G 0 PASS DP=82;GPV=1;SPV=0.017632;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:4,1:30,7 +chr18 15482160 . G A 0 PASS DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,4:7,1 +chr18 15490420 . G A 0 PASS DP=137;GPV=1;SPV=0.0062772;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:20,4:33,2 +chr18 15492464 . T C 0 PASS DP=210;GPV=1;SPV=0.0048146;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:101,14:47,7:54,7 +chr18 15499116 . G A 0 PASS DP=116;GPV=1;SPV=0.023519;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:46,15:40,13:6,2 +chr18 15516659 . A T 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr18 15528075 . G C 0 PASS DP=206;GPV=1;SPV=0.030672;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:96,18:28,6:68,12 +chr18 15529602 . TC T 0 PASS DP=162;GPV=1;SPV=0.012138;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:67,16:19,7:48,9 +chr18 15584624 . A C 0 PASS DP=56;GPV=1;SPV=0.11411;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:7,4:25,1 +chr18 15590084 . T A 0 PASS DP=60;GPV=1;SPV=0.027592;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,4:11,2 +chr18 15595349 . G A 0 PASS DP=22;GPV=1;SPV=0.076023;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:2,3:7,2 +chr18 15601574 . G C 0 PASS DP=70;GPV=1;SPV=0.049775;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:10,5:18,6 +chr18 15647625 . C A 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr18 15659226 . T C 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr18 15659867 . C T 0 PASS DP=36;GPV=1;SPV=0.019899;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:7,4:7,2 +chr18 15689453 . GC G 0 PASS DP=282;GPV=1;SPV=0.016853;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:140,16:35,12:105,4 +chr18 15707448 . G A 0 PASS DP=18;GPV=1;SPV=0.23529;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:5,1:2,1 +chr18 15731936 . A C 0 PASS DP=38;GPV=1;SPV=0.040541;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:0,4:16,1 +chr18 15761508 . G T 0 PASS DP=59;GPV=1;SPV=0.1174;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:28,4:2,0 +chr18 16047156 . C G 0 PASS DP=152;GPV=1;SPV=0.025835;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:55,13:35,9:20,4 +chr18 16855255 . T C 0 PASS DP=171;GPV=1;SPV=0.033504;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:74,14:31,2:43,12 +chr18 17261111 . G T 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:11,4:0,0 +chr18 17415801 . C T 0 PASS DP=87;GPV=1;SPV=0.030376;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:14,5:22,7 +chr18 17638914 . G A 0 PASS DP=26;GPV=1;SPV=0.066957;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr18 18127189 . G A 0 PASS DP=52;GPV=1;SPV=0.031062;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:10,1:12,4 +chr18 18558206 . C G 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:0,0:5,4 +chr18 18582541 . T C 0 PASS DP=40;GPV=1;SPV=0.023562;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:12,4:3,1 +chr18 19054139 . G A 0 PASS DP=27;GPV=1;SPV=0.01971;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:3,4:7,4 +chr18 19293697 . T C 0 PASS DP=33;GPV=1;SPV=0.058162;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,3:2,1 +chr18 19375972 . G T 0 PASS DP=53;GPV=1;SPV=0.047106;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:2,1:20,6 +chr18 20343782 . T A 0 PASS DP=36;GPV=1;SPV=0.082251;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:4,2:12,2 +chr18 20759837 . G T 0 PASS DP=124;GPV=1;SPV=0.03415;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:64,9:25,8:39,1 +chr18 22010504 . T C 0 PASS DP=52;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:4,8:1,3:3,5 +chr18 22964628 . AAT A 0 PASS DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,3:14,1 +chr18 25487439 . A AAAT 0 PASS DP=36;GPV=1;SPV=0.02037;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,5:6,4:3,1 +chr18 30817403 . G T 0 PASS DP=88;GPV=1;SPV=0.001488;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:40,11:19,7:21,4 +chr18 31353073 . G T 0 PASS DP=86;GPV=1;SPV=0.026101;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:19,4:23,2 +chr18 32662915 . T C 0 PASS DP=81;GPV=1;SPV=1.9826e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:12,4:13,13 +chr18 34046607 . C CATATATAT 0 PASS DP=21;GPV=1;SPV=0.11538;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:6,3:0,1 +chr18 34436623 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:4,3:8,1 +chr18 34549507 . C T 0 PASS DP=71;GPV=1;SPV=0.0001464;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:16,8:11,6 +chr18 35825421 . TTA T 0 PASS DP=62;GPV=1;SPV=0.042775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:13,4:11,2 +chr18 35830911 . G A 0 PASS DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:26,2:9,3 +chr18 36720699 . T C 0 PASS DP=66;GPV=1;SPV=0.12189;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,5:9,4:11,1 +chr18 37052182 . C A 0 PASS DP=86;GPV=1;SPV=0.00017146;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:38,17:18,9:20,8 +chr18 38726232 . A G 0 PASS DP=36;GPV=1;SPV=0.047035;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:5,2:4,2 +chr18 40562185 . A G 0 PASS DP=61;GPV=1;SPV=4.965e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:10,7:8,5 +chr18 41653016 . C A 0 PASS DP=88;GPV=1;SPV=0.002256;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:16,6:19,2 +chr18 43115119 . T C 0 PASS DP=79;GPV=1;SPV=0.00032813;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:11,5:17,5 +chr18 43242078 . T A 0 PASS DP=63;GPV=1;SPV=5.4752e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:8,4:12,9 +chr18 48043953 . G T 0 PASS DP=73;GPV=1;SPV=0.00064879;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:17,8:15,6 +chr18 49292351 . GACAGACAC G 0 PASS DP=58;GPV=1;SPV=0.020482;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,6:14,4:10,2 +chr18 49454907 . CA C 0 PASS DP=46;GPV=1;SPV=0.0079921;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:8,9:5,2 +chr18 50250236 . A G 0 PASS DP=66;GPV=1;SPV=0.073628;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,3:21,2 +chr18 52318204 . C A 0 PASS DP=84;GPV=1;SPV=6.642e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,24:11,14:17,10 +chr18 52330027 . T C 0 PASS DP=96;GPV=1;SPV=1.0254e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:35,23:20,10:15,13 +chr18 52765199 . A ATTT 0 PASS DP=44;GPV=1;SPV=0.030925;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,1:8,4 +chr18 52984585 . T A 0 PASS DP=89;GPV=1;SPV=1.267e-10;SS=2;SSC=98;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:17,22:5,8:12,14 +chr18 53663093 . C A 0 PASS DP=85;GPV=1;SPV=0.02021;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:15,2:14,2 +chr18 55511329 . T TAA 0 PASS DP=41;GPV=1;SPV=0.036566;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:13,5:4,1 +chr18 55866048 . G T 0 PASS DP=76;GPV=1;SPV=8.8861e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:8,10:15,4 +chr18 56379548 . C CT 0 PASS DP=34;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,9:1,8:3,1 +chr18 60265967 . C CT 0 PASS DP=25;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:2,3:6,1 +chr18 60756331 . AGG A 0 PASS DP=48;GPV=1;SPV=0.0012994;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:5,6:10,2 +chr18 60756348 . C T 0 PASS DP=46;GPV=1;SPV=0.040169;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:4,3:13,1 +chr18 61780003 . A ACACC 0 PASS DP=22;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,3:0,1:2,2 +chr18 61971779 . A ATT 0 PASS DP=63;GPV=1;SPV=0.046785;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:11,5:11,4 +chr18 62951812 . AT A 0 PASS DP=55;GPV=1;SPV=0.044481;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:9,7:13,3 +chr18 62993737 . G GGTGT 0 PASS DP=77;GPV=1;SPV=0.0046122;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:18,8:9,7 +chr18 63050845 . T A 0 PASS DP=64;GPV=1;SPV=0.14757;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:9,4:8,2:1,2 +chr18 63758467 . C T 0 PASS DP=76;GPV=1;SPV=2.8955e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,22:13,9:9,13 +chr18 64955064 . T A 0 PASS DP=94;GPV=1;SPV=1.4977e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:33,20:16,7:17,13 +chr18 65277414 . C G 0 PASS DP=78;GPV=1;SPV=0.020648;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:14,2:18,3 +chr18 65782057 . C T 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr18 65829775 . A AGTGTGT 0 PASS DP=35;GPV=1;SPV=0.046816;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,8:8,6:4,2 +chr18 66019160 . G A 0 PASS DP=73;GPV=1;SPV=0.075568;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:14,1:21,3 +chr18 66111606 . AG A 0 PASS DP=33;GPV=1;SPV=0.0098105;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,1:2,4 +chr18 66476437 . G GTTTTTTT 0 PASS DP=30;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:5,6:3,4:2,2 +chr18 67746907 . C CA 0 PASS DP=50;GPV=1;SPV=0.0017074;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,5:6,2 +chr18 67773429 . TA T 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:3,1:10,3 +chr18 70211408 . A ATAAAAT 0 PASS DP=47;GPV=1;SPV=0.019439;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,6:12,3:4,3 +chr18 70211419 . AC A 0 PASS DP=58;GPV=1;SPV=0.041527;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:19,4:3,2 +chr18 70211425 . C A 0 PASS DP=54;GPV=1;SPV=0.016051;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:15,5:2,3 +chr18 71425609 . T A 0 PASS DP=68;GPV=1;SPV=0.00079179;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:11,3:11,5 +chr18 73245252 . C CA 0 PASS DP=55;GPV=1;SPV=0.043835;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,1:8,3 +chr18 74229041 . CAA C 0 PASS DP=58;GPV=1;SPV=0.0096376;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:15,11:10,5 +chr18 74276528 . G GCACA 0 PASS DP=57;GPV=1;SPV=0.0090069;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,9:11,6:2,3 +chr18 74616946 . ACCACACG A 0 PASS DP=47;GPV=1;SPV=0.06407;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:8,2:15,3 +chr18 75406241 . G A 0 PASS DP=93;GPV=1;SPV=3.9474e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:8,10:23,6 +chr18 76764892 . GT G 0 PASS DP=21;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr18 79340984 . C T 0 PASS DP=79;GPV=1;SPV=0.034849;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:9,1:22,3 +chr18 79479582 . G T 0 PASS DP=115;GPV=1;SPV=3.6015e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:40,20:19,8:21,12 +chr18 79687173 . T C 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:3,2:7,2 +chr18 79807965 . G T 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,1:11,3 +chr19 236375 . A G 0 PASS DP=53;GPV=1;SPV=0.0076814;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:13,6:8,1 +chr19 351062 . T TAA 0 PASS DP=33;GPV=1;SPV=0.26815;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:18,3:8,2:10,1 +chr19 718514 . C T 0 PASS DP=92;GPV=1;SPV=0.00102;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:17,4:19,5 +chr19 735177 . G A 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:4,2:5,2 +chr19 1780973 . T TAAAA 0 PASS DP=52;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:13,3:7,5 +chr19 2349302 . T C 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:4,1:9,3 +chr19 2707883 . A C 0 PASS DP=77;GPV=1;SPV=2.2804e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:12,13:6,7 +chr19 3078048 . GAAGA G 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:19,2:7,2 +chr19 3078056 . A G 0 PASS DP=61;GPV=1;SPV=0.12656;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:22,2:11,2 +chr19 3815759 . T C 0 PASS DP=55;GPV=1;SPV=0.0004679;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:9,9:12,6 +chr19 3885109 . T TAA 0 PASS DP=33;GPV=1;SPV=0.13077;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,5:12,4:5,1 +chr19 3977414 . C T 0 PASS DP=108;GPV=1;SPV=0.0055282;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:29,3:17,4 +chr19 4737346 . A T 0 PASS DP=23;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:0,0:4,2 +chr19 5409321 . A T 0 PASS DP=54;GPV=1;SPV=0.012883;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:13,6:9,5 +chr19 5477430 . T A 0 PASS DP=60;GPV=1;SPV=0.15385;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:5,3:5,1:0,2 +chr19 5982652 . C CT 0 PASS DP=37;GPV=1;SPV=0.15091;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:13,4:8,1 +chr19 7061145 . C T 0 PASS DP=28;GPV=1;SPV=0.049275;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,5:6,1 +chr19 7599423 . T C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr19 8326631 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0028145;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,12:1,9:3,3 +chr19 8510286 . T A 0 PASS DP=49;GPV=1;SPV=0.017591;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:8,7:5,5:3,2 +chr19 8768742 . G A 0 PASS DP=172;GPV=1;SPV=0.028342;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:73,12:54,8:19,4 +chr19 8774970 . G C 0 PASS DP=298;GPV=1;SPV=0.015225;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:137,20:60,12:77,8 +chr19 8890533 . T C 0 PASS DP=72;GPV=1;SPV=0.015262;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:16,4:18,3 +chr19 8969621 . GAA G 0 PASS DP=52;GPV=1;SPV=0.012947;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:18,4:0,1 +chr19 10028368 . T C 0 PASS DP=73;GPV=1;SPV=0.049793;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,8:12,4:6,4 +chr19 10262018 . G C 0 PASS DP=92;GPV=1;SPV=0.00094537;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:25,8:17,4 +chr19 10577423 . CTTTTT C 0 PASS DP=33;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,6:5,3:7,3 +chr19 10665615 . C T 0 PASS DP=62;GPV=1;SPV=0.023332;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:9,4:15,8 +chr19 11587555 . GGA G 0 PASS DP=29;GPV=1;SPV=0.036089;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:6,4:1,1 +chr19 12308693 . A AATAT 0 PASS DP=29;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:8,3:2,3 +chr19 12402416 . C CTT 0 PASS DP=67;GPV=1;SPV=0.045087;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,10:20,9:4,1 +chr19 12981782 . CT C 0 PASS DP=38;GPV=1;SPV=0.1016;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:10,3:7,1 +chr19 14762629 . AT A 0 PASS DP=77;GPV=1;SPV=0.020491;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:18,5:10,6 +chr19 15533591 . C CT 0 PASS DP=35;GPV=1;SPV=0.0035559;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:4,9:4,1 +chr19 15688367 . CA C 0 PASS DP=75;GPV=1;SPV=0.00058715;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:19,7:12,5 +chr19 15834007 . G A 0 PASS DP=90;GPV=1;SPV=0.000105;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:20,5:13,7 +chr19 16063511 . GGAAAGAAA G 0 PASS DP=20;GPV=1;SPV=0.15441;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:5,2:0,0 +chr19 16295080 . C CAAAA 0 PASS DP=35;GPV=1;SPV=0.018518;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:11,8:4,1 +chr19 16790643 . A T 0 PASS DP=72;GPV=1;SPV=0.033332;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:13,5:17,2 +chr19 17607489 . C G 0 PASS DP=24;GPV=1;SPV=0.024499;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:6,7:0,1 +chr19 17656852 . CAAAAAA C 0 PASS DP=57;GPV=1;SPV=0.014079;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:6,5:4,3 +chr19 18885523 . T G 0 PASS DP=45;GPV=1;SPV=0.13907;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:17,3:9,2 +chr19 20008074 . C T 0 PASS DP=100;GPV=1;SPV=0.019259;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:47,6:21,5:26,1 +chr19 20063524 . CTT C 0 PASS DP=30;GPV=1;SPV=0.004958;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,4:3,3 +chr19 20342244 . CA C 0 PASS DP=63;GPV=1;SPV=0.077856;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:15,2:15,2 +chr19 21074205 . A T 0 PASS DP=58;GPV=1;SPV=0.0035182;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,8:11,2 +chr19 21112816 . A AT 0 PASS DP=19;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,3:1,2 +chr19 22396955 . C T 0 PASS DP=86;GPV=1;SPV=6.7474e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:12,6:14,12 +chr19 22414244 . A C 0 PASS DP=40;GPV=1;SPV=0.42424;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,2:5,1:1,1 +chr19 22984571 . AAAAAATAC A 0 PASS DP=50;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:14,4:9,3 +chr19 23373346 . TTA T 0 PASS DP=39;GPV=1;SPV=0.040876;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:9,4:6,4 +chr19 23373387 . A T 0 PASS DP=44;GPV=1;SPV=0.14404;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:14,5:6,1:8,4 +chr19 23472408 . TTA T 0 PASS DP=65;GPV=1;SPV=0.02409;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:12,4:13,3 +chr19 25143274 . A G 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:17,4:0,0 +chr19 26158860 . T C 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr19 27498371 . T G 0 PASS DP=79;GPV=1;SPV=1.2351e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:30,24:17,9:13,15 +chr19 27860475 . C T 0 PASS DP=68;GPV=1;SPV=1.4339e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,21:11,10:9,11 +chr19 30808091 . CT C 0 PASS DP=60;GPV=1;SPV=0.0011108;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:6,9:2,6:4,3 +chr19 31893176 . CA C 0 PASS DP=52;GPV=1;SPV=0.0083484;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:15,10:2,2 +chr19 32902046 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:3,2:16,2 +chr19 33223309 . GAAA G 0 PASS DP=41;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:11,6:6,1 +chr19 34201113 . G C 0 PASS DP=70;GPV=1;SPV=4.5018e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,15:9,6:11,9 +chr19 34658808 . AACAAC A 0 PASS DP=50;GPV=1;SPV=0.057027;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,5:11,1 +chr19 35105578 . CCACCATCACCATCATCAT C 0 PASS DP=56;GPV=1;SPV=0.021894;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:9,5:12,6 +chr19 36163532 . C CA 0 PASS DP=36;GPV=1;SPV=0.021189;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,9:10,8:4,1 +chr19 36501143 . GTT G 0 PASS DP=38;GPV=1;SPV=0.19154;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:13,3:8,1 +chr19 36786266 . CT C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,5:3,2 +chr19 37273558 . A G 0 PASS DP=185;GPV=1;SPV=0.022957;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:81,11:36,5:45,6 +chr19 37278500 . A C 0 PASS DP=44;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:26,4:0,0 +chr19 37730225 . AT A 0 PASS DP=51;GPV=1;SPV=0.0032919;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:13,7:7,2 +chr19 37900560 . C CAAAA 0 PASS DP=37;GPV=1;SPV=0.033617;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:12,6:5,1 +chr19 38673657 . A T 0 PASS DP=41;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:0,4:0,1:0,3 +chr19 39098275 . A G 0 PASS DP=29;GPV=1;SPV=0.037648;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,6:4,1 +chr19 39430213 . C CTTT 0 PASS DP=41;GPV=1;SPV=0.10134;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,6:8,4:8,2 +chr19 40164027 . T G 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,2:10,2 +chr19 40287856 . C CT 0 PASS DP=28;GPV=1;SPV=0.072018;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,5:5,1 +chr19 40885953 . G GT 0 PASS DP=48;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,14:5,7:9,7 +chr19 41188848 . T A 0 PASS DP=27;GPV=1;SPV=0.048951;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,4:2,3:1,1 +chr19 41723946 . C CA 0 PASS DP=47;GPV=1;SPV=0.012459;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:17,8:5,2 +chr19 41880481 . G T 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:4,7:5,1 +chr19 42087595 . T A 0 PASS DP=40;GPV=1;SPV=0.046584;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,4:0,0:8,4 +chr19 42199199 . G A 0 PASS DP=103;GPV=1;SPV=0.00047993;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:20,7:23,4 +chr19 43985541 . T C 0 PASS DP=80;GPV=1;SPV=0.001936;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:34,15:28,4:6,11 +chr19 44688183 . C G 0 PASS DP=84;GPV=1;SPV=0.011495;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:23,7:10,1:13,6 +chr19 44721406 . G GA 0 PASS DP=23;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,4:2,1 +chr19 44946191 . C CTGTG 0 PASS DP=50;GPV=1;SPV=0.0063756;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,8:4,7:11,1 +chr19 46562814 . G A 0 PASS DP=86;GPV=1;SPV=2.7228e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:18,12:13,10 +chr19 46863942 . C T 0 PASS DP=86;GPV=1;SPV=0.00054148;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:33,10:16,6:17,4 +chr19 47064721 . T TA 0 PASS DP=52;GPV=1;SPV=0.0025984;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,13:7,5:11,8 +chr19 47300513 . T TTC 0 PASS DP=45;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:4,1:11,3 +chr19 47707784 . CA C 0 PASS DP=47;GPV=1;SPV=0.00025886;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,16:6,13:4,3 +chr19 47840703 . C CTTTT 0 PASS DP=41;GPV=1;SPV=0.044583;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:8,2:6,5 +chr19 47841571 . A AT 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,2:11,2 +chr19 47953157 . A C 0 PASS DP=85;GPV=1;SPV=0.043478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:15,4:15,6 +chr19 48153773 . C CACACACACACTT 0 PASS DP=41;GPV=1;SPV=0.013014;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:3,1:7,6 +chr19 48521892 . G GTCTCTCTC 0 PASS DP=35;GPV=1;SPV=0.094721;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:1,2:14,2 +chr19 48648203 . C CA 0 PASS DP=47;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:11,9:4,2 +chr19 48664051 . G A 0 PASS DP=87;GPV=1;SPV=2.4081e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:25,26:15,17:10,9 +chr19 48710414 . CT C 0 PASS DP=27;GPV=1;SPV=0.015942;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:8,4:0,1 +chr19 50452504 . G GTATCTATC 0 PASS DP=63;GPV=1;SPV=0.031844;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:20,9:9,6:11,3 +chr19 50967511 . C CCACACACACACA 0 PASS DP=58;GPV=1;SPV=0.064666;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,4:15,3:10,1 +chr19 52090654 . G A 0 PASS DP=42;GPV=1;SPV=0.0020828;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,10:7,5:2,5 +chr19 52376496 . GCC G 0 PASS DP=32;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,3:0,0:1,3 +chr19 53423658 . T A 0 PASS DP=16;GPV=1;SPV=0.038462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:4,2:0,2 +chr19 53809517 . C CAA 0 PASS DP=54;GPV=1;SPV=0.018203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,9:8,8:5,1 +chr19 54825943 . T C 0 PASS DP=97;GPV=1;SPV=0.011999;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:46,7:19,3:27,4 +chr19 54926205 . G GGTGTGTGTGTGTGT 0 PASS DP=65;GPV=1;SPV=0.0025413;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,10:10,5:5,5 +chr19 55472169 . G A 0 PASS DP=42;GPV=1;SPV=0.047937;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:6,1:12,9 +chr19 56067747 . T TAAA 0 PASS DP=48;GPV=1;SPV=0.020191;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,10:6,8:10,2 +chr19 57110398 . A T 0 PASS DP=52;GPV=1;SPV=0.02531;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,3:9,2 +chr19 57330913 . CT C 0 PASS DP=40;GPV=1;SPV=0.019426;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:8,3:8,4 +chr19 57690459 . GTATA G 0 PASS DP=86;GPV=1;SPV=0.046608;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,7:11,2:12,5 +chr19 58241180 . T TATA 0 PASS DP=46;GPV=1;SPV=0.054264;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:8,2:11,2 +chr19 58427387 . TTTCTTTCTTTCTTTCTTTCC T 0 PASS DP=36;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,9:1,3:9,6 +chr2 932430 . CCT C 0 PASS DP=45;GPV=1;SPV=0.059432;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,1:5,3 +chr2 932433 . G T 0 PASS DP=50;GPV=1;SPV=0.038102;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:17,2:5,3 +chr2 1975247 . T TGCCAGATCCCACCGCCAGATCCCACC 0 PASS DP=53;GPV=1;SPV=0.0079397;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:11,6:7,3 +chr2 2122837 . A ATG 0 PASS DP=46;GPV=1;SPV=0.020413;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,7:13,5:6,2 +chr2 2236812 . TTC T 0 PASS DP=29;GPV=1;SPV=0.11429;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:16:1,3:0,2:1,1 +chr2 3057938 . G GGTA 0 PASS DP=38;GPV=1;SPV=0.11486;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:16,3:13,2:3,1 +chr2 5032952 . A C 0 PASS DP=89;GPV=1;SPV=0.15909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:4,3:2,2:2,1 +chr2 5158655 . A G 0 PASS DP=80;GPV=1;SPV=0.00011485;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:16,5:11,6 +chr2 6157462 . CT C 0 PASS DP=53;GPV=1;SPV=0.021836;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:25,7:13,2:12,5 +chr2 6169264 . TTC T 0 PASS DP=51;GPV=1;SPV=0.18558;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:11,1:19,3 +chr2 6376099 . C CTTT 0 PASS DP=29;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,4:5,2:2,2 +chr2 7170701 . CCTCT C 0 PASS DP=37;GPV=1;SPV=0.0094549;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,7:7,6:4,1 +chr2 7189371 . GAA G 0 PASS DP=34;GPV=1;SPV=0.16643;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:6,3:11,1 +chr2 7240623 . T C 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,2:9,2 +chr2 7240625 . T C 0 PASS DP=38;GPV=1;SPV=0.19804;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,5:8,2:10,3 +chr2 7924897 . T C 0 PASS DP=82;GPV=1;SPV=6.2097e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:15,15:8,8 +chr2 8620963 . T TTGTG 0 PASS DP=61;GPV=1;SPV=0.022211;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,11:13,5:13,6 +chr2 9125436 . A G 0 PASS DP=36;GPV=1;SPV=0.044444;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:5,3:6,2 +chr2 10916609 . AT A 0 PASS DP=82;GPV=1;SPV=5.7203e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:29,13:14,8:15,5 +chr2 11035152 . A G 0 PASS DP=38;GPV=1;SPV=0.0052761;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:7,8:4,2 +chr2 11090929 . T TA 0 PASS DP=35;GPV=1;SPV=0.16912;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:10,3:9,1 +chr2 13841761 . T C 0 PASS DP=81;GPV=1;SPV=3.2056e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:10,10:17,3 +chr2 15098024 . AAT A 0 PASS DP=22;GPV=1;SPV=0.024724;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:2,3:3,5 +chr2 15648603 . GA G 0 PASS DP=39;GPV=1;SPV=0.0088769;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,8:2,1 +chr2 16787052 . C G 0 PASS DP=82;GPV=1;SPV=1.5724e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:18,7:9,13 +chr2 16787478 . C T 0 PASS DP=77;GPV=1;SPV=1.218e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:12,7:14,9 +chr2 17129427 . T TAAA 0 PASS DP=29;GPV=1;SPV=0.028638;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:4,9:1,6:3,3 +chr2 17477942 . A AAAG 0 PASS DP=41;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,2:5,2 +chr2 22238326 . TTATATA T 0 PASS DP=42;GPV=1;SPV=0.068111;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,7:2,5:5,2 +chr2 22415345 . G A 0 PASS DP=102;GPV=1;SPV=4.619e-10;SS=2;SSC=93;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:25,24:18,15:7,9 +chr2 22654476 . G T 0 PASS DP=99;GPV=1;SPV=4.3081e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:38,20:16,8:22,12 +chr2 22918431 . T C 0 PASS DP=88;GPV=1;SPV=1.6127e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:15,7:16,8 +chr2 23074655 . C T 0 PASS DP=89;GPV=1;SPV=0.0001575;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:16,5:16,6 +chr2 23203690 . CAA C 0 PASS DP=65;GPV=1;SPV=0.10766;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,4:15,2:4,2 +chr2 23711346 . T C 0 PASS DP=17;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,3:3,1:0,2 +chr2 23839131 . A T 0 PASS DP=77;GPV=1;SPV=1.3992e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:18,7:9,10 +chr2 24331068 . C CT 0 PASS DP=33;GPV=1;SPV=0.029941;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:4,4:9,2 +chr2 24642037 . T TGTGTGTGCGC 0 PASS DP=73;GPV=1;SPV=0.0072439;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,10:10,5:13,5 +chr2 25193025 . G A 0 PASS DP=74;GPV=1;SPV=0.048408;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:8,2:16,7 +chr2 25526390 . TATA T 0 PASS DP=42;GPV=1;SPV=0.0019379;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,10:5,5:3,5 +chr2 25963673 . A T 0 PASS DP=59;GPV=1;SPV=0.036457;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:16,7:9,2:7,5 +chr2 26892756 . T TGAGAGAGA 0 PASS DP=50;GPV=1;SPV=0.04277;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:16,3:10,4 +chr2 27539957 . A G 0 PASS DP=29;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:10,5:3,1 +chr2 27699820 . A G 0 PASS DP=24;GPV=1;SPV=0.024242;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,3:1,2:0,1 +chr2 30989659 . TATATATATTAGTATATATAAAAA T 0 PASS DP=30;GPV=1;SPV=0.036526;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,3:4,1 +chr2 32019835 . A T 0 PASS DP=66;GPV=1;SPV=0.27198;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:8,4:5,2:3,2 +chr2 32157941 . CAA C 0 PASS DP=36;GPV=1;SPV=0.0091441;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:4,2:3,5 +chr2 32762276 . AGTGTGTGTGTGT A 0 PASS DP=39;GPV=1;SPV=0.033948;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:4,3:3,5 +chr2 33227799 . CTT C 0 PASS DP=25;GPV=1;SPV=0.059497;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,5:7,4:2,1 +chr2 34144808 . C T 0 PASS DP=73;GPV=1;SPV=5.02e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:11,6:12,11 +chr2 35144715 . A G 0 PASS DP=88;GPV=1;SPV=1.9834e-09;SS=2;SSC=87;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:11,12:7,7 +chr2 35418817 . T A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:3,1:4,1 +chr2 35496703 . T C 0 PASS DP=77;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:24,4:15,1:9,3 +chr2 43012620 . ATTTTTTTTTT A 0 PASS DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,3:2,1 +chr2 43775854 . A ATT 0 PASS DP=37;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:3,3:8,1 +chr2 43904701 . C A 0 PASS DP=54;GPV=1;SPV=0.045519;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,5:8,3:4,2 +chr2 44066335 . A ATT 0 PASS DP=95;GPV=1;SPV=0.11779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,4:11,3:12,1 +chr2 44354474 . T A 0 PASS DP=97;GPV=1;SPV=1.2502e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:16,8:14,8 +chr2 44805528 . G GC 0 PASS DP=95;GPV=1;SPV=4.6364e-06;SS=2;SSC=53;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:14,7:17,8 +chr2 45414714 . GTATA G 0 PASS DP=76;GPV=1;SPV=0.060943;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:42,6:27,3:15,3 +chr2 45418677 . A T 0 PASS DP=67;GPV=1;SPV=0.015152;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:29:1,4:1,2:0,2 +chr2 45877089 . A G 0 PASS DP=79;GPV=1;SPV=0.25496;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,4:17,1:10,3 +chr2 46004180 . C G 0 PASS DP=95;GPV=1;SPV=5.3433e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,2:12,9 +chr2 46607781 . G A 0 PASS DP=84;GPV=1;SPV=3.2598e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:17,14:6,9 +chr2 46944430 . A G 0 PASS DP=60;GPV=1;SPV=0.0001796;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:9,6:12,7 +chr2 47900609 . C CACACGT 0 PASS DP=26;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:1,3:8,2 +chr2 48059603 . A ATTTT 0 PASS DP=41;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,5:7,3:5,2 +chr2 50026859 . CTTTTTTTTTTTTTTTTTTT C 0 PASS DP=21;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr2 50606606 . C CAATAATAATAATAAT 0 PASS DP=65;GPV=1;SPV=0.035226;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:32,11:18,7:14,4 +chr2 51966739 . G A 0 PASS DP=64;GPV=1;SPV=2.5197e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:12,8:6,10 +chr2 54087912 . A T 0 PASS DP=79;GPV=1;SPV=0.028571;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:34:0,3:0,1:0,2 +chr2 54753664 . T G 0 PASS DP=64;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:6,2:2,1:4,1 +chr2 56922408 . G T 0 PASS DP=74;GPV=1;SPV=0.032909;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:21,3:16,3 +chr2 57529639 . G A 0 PASS DP=72;GPV=1;SPV=0.0024898;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,9:17,6:13,3 +chr2 60435528 . C CT 0 PASS DP=37;GPV=1;SPV=0.03378;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,3:5,3 +chr2 61417735 . TTTTCTTTTC T 0 PASS DP=49;GPV=1;SPV=0.022116;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:7,6:8,2 +chr2 61933771 . TC T 0 PASS DP=69;GPV=1;SPV=0.10571;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:20,2:16,2 +chr2 61963159 . C CA 0 PASS DP=79;GPV=1;SPV=0.0053061;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:16,6:16,1 +chr2 61975118 . CT C 0 PASS DP=21;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:1,1:4,3 +chr2 62315376 . C CAAA 0 PASS DP=39;GPV=1;SPV=0.017292;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,7:4,6:10,1 +chr2 63909413 . CT C 0 PASS DP=21;GPV=1;SPV=0.023839;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:2,4:4,2 +chr2 64170709 . C CAA 0 PASS DP=38;GPV=1;SPV=0.0041611;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,7:5,1 +chr2 66091570 . C T 0 PASS DP=68;GPV=1;SPV=0.01699;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:21,5:9,5 +chr2 67461581 . ATATATATATGTGTG A 0 PASS DP=50;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,4:5,1:8,3 +chr2 68413223 . T G 0 PASS DP=22;GPV=1;SPV=0.0067079;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,5:2,2 +chr2 69651830 . C G 0 PASS DP=42;GPV=1;SPV=0.047619;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:22:0,3:0,3:0,0 +chr2 70917151 . C CAA 0 PASS DP=49;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,8:3,7:5,1 +chr2 73630958 . T C 0 PASS DP=86;GPV=1;SPV=0.038305;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:25,2:20,4 +chr2 73871565 . T A 0 PASS DP=50;GPV=1;SPV=0.20158;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:13,5:2,3:11,2 +chr2 74742473 . C CA 0 PASS DP=45;GPV=1;SPV=0.02121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,7:3,2 +chr2 75251101 . AGG A 0 PASS DP=40;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:5,5:2,2:3,3 +chr2 75905250 . T G 0 PASS DP=59;GPV=1;SPV=2.4155e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,12:4,7:8,5 +chr2 76692291 . T A 0 PASS DP=89;GPV=1;SPV=0.00012116;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:23,7:10,5 +chr2 76913543 . A ATTTTTTTTTTTTTT 0 PASS DP=42;GPV=1;SPV=0.32176;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,4:16,3:9,1 +chr2 77103647 . G GTATATA 0 PASS DP=56;GPV=1;SPV=0.013236;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:18,8:8,7:10,1 +chr2 77479101 . G T 0 PASS DP=89;GPV=1;SPV=0.011919;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:19,3:28,6 +chr2 77686348 . A G 0 PASS DP=55;GPV=1;SPV=0.011394;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,1:8,6 +chr2 77931828 . G A 0 PASS DP=81;GPV=1;SPV=1.3654e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:21,18:15,9:6,9 +chr2 78549115 . C A 0 PASS DP=71;GPV=1;SPV=0.0006295;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:16,8:14,5 +chr2 79845172 . CTT C 0 PASS DP=41;GPV=1;SPV=0.021449;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,7:5,5:2,2 +chr2 80057175 . G GT 0 PASS DP=61;GPV=1;SPV=0.0061655;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:15,6:11,2 +chr2 80589903 . T TGTGTGTGC 0 PASS DP=63;GPV=1;SPV=0.031686;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,9:10,5:8,4 +chr2 80641753 . C T 0 PASS DP=79;GPV=1;SPV=1.0312e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:8,5:14,11 +chr2 80984528 . T C 0 PASS DP=84;GPV=1;SPV=4.3937e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:16,13:7,9 +chr2 81700693 . T A 0 PASS DP=99;GPV=1;SPV=9.7046e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:26,7:17,9 +chr2 81701068 . C A 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:12,14:4,11:8,3 +chr2 81720931 . A T 0 PASS DP=82;GPV=1;SPV=1.7347e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:32,21:10,8:22,13 +chr2 82109248 . C CTT 0 PASS DP=28;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2 +chr2 82135167 . T G 0 PASS DP=19;GPV=1;SPV=0.018182;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,8:0,1:0,7 +chr2 82176577 . G C 0 PASS DP=68;GPV=1;SPV=0.00031835;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:10,4:13,6 +chr2 82468469 . G C 0 PASS DP=64;GPV=1;SPV=0.20188;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,4:21,2:5,2 +chr2 83232224 . G GTATATATATA 0 PASS DP=26;GPV=1;SPV=0.088235;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:4,3:2,1 +chr2 83429897 . C T 0 PASS DP=82;GPV=1;SPV=2.5223e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:11,8:13,7 +chr2 84276435 . A T 0 PASS DP=54;GPV=1;SPV=0.26374;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:7,5:4,4:3,1 +chr2 85425230 . C A 0 PASS DP=67;GPV=1;SPV=9.8808e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:12,7:12,7 +chr2 86569318 . A AT 0 PASS DP=27;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:5,1:3,3 +chr2 87107818 . T C 0 PASS DP=57;GPV=1;SPV=0.023702;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:8,5:9,4 +chr2 87192569 . A G 0 PASS DP=52;GPV=1;SPV=0.041892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:8,1:13,6 +chr2 87228717 . T A 0 PASS DP=94;GPV=1;SPV=0.026424;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:47,15:24,4:23,11 +chr2 87361097 . A T 0 PASS DP=217;GPV=1;SPV=0.025783;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:101,14:63,12:38,2 +chr2 87361322 . T C 0 PASS DP=128;GPV=1;SPV=0.027614;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:56,12:17,5:39,7 +chr2 87378763 . C G 0 PASS DP=56;GPV=1;SPV=0.098694;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:20,4:11,1 +chr2 87424878 . C G 0 PASS DP=51;GPV=1;SPV=0.0018749;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,11:11,7:8,4 +chr2 87884055 . G A 0 PASS DP=99;GPV=1;SPV=0.029613;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:38,12:13,6:25,6 +chr2 87885399 . C A 0 PASS DP=88;GPV=1;SPV=0.011249;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:20,3:17,3 +chr2 89534390 . A G 0 PASS DP=73;GPV=1;SPV=0.020062;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,7:14,1 +chr2 90263274 . T A 0 PASS DP=60;GPV=1;SPV=0.010783;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:5,1:19,9 +chr2 90317559 . AG A 0 PASS DP=42;GPV=1;SPV=0.065353;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:4,3:14,1 +chr2 90327067 . G T 0 PASS DP=43;GPV=1;SPV=0.020644;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,1:7,8 +chr2 90356868 . AGCATT A 0 PASS DP=174;GPV=1;SPV=0.038484;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:46,7:34,6:12,1 +chr2 91467591 . T C 0 PASS DP=177;GPV=1;SPV=0.0058698;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:78,12:28,3:50,9 +chr2 91473716 . G C 0 PASS DP=315;GPV=1;SPV=0.044973;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:140,24:68,13:72,11 +chr2 91475304 . C T 0 PASS DP=121;GPV=1;SPV=0.036902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:51,15:23,2:28,13 +chr2 91512064 . C T 0 PASS DP=53;GPV=1;SPV=0.093588;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:0,0:26,4 +chr2 91590867 . A C 0 PASS DP=121;GPV=1;SPV=0.032901;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:47,13:18,7:29,6 +chr2 92109426 . G C 0 PASS DP=214;GPV=1;SPV=0.02189;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:101,17:47,8:54,9 +chr2 92244933 . A C 0 PASS DP=265;GPV=1;SPV=0.0031124;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:121,23:45,11:76,12 +chr2 92300353 . C A 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:5,2:15,2 +chr2 92308722 . A G 0 PASS DP=104;GPV=1;SPV=0.035968;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:33,7:17,1 +chr2 92317187 . G A 0 PASS DP=148;GPV=1;SPV=0.036464;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:57,7:48,2:9,5 +chr2 92384123 . T G 0 PASS DP=38;GPV=1;SPV=0.05251;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,2:1,2 +chr2 92401141 . T A 0 PASS DP=193;GPV=1;SPV=0.0017431;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:87:77,10:4,2:73,8 +chr2 92403422 . G T 0 PASS DP=61;GPV=1;SPV=0.088868;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:1,0:29,4 +chr2 92417092 . A G 0 PASS DP=77;GPV=1;SPV=0.0066147;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:6,10:24,3 +chr2 92551166 . A G 0 PASS DP=47;GPV=1;SPV=0.11479;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:7,1:17,3 +chr2 92557382 . T A 0 PASS DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:20,4:2,0 +chr2 92637920 . C T 0 PASS DP=417;GPV=1;SPV=0.017433;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:202,23:122,13:80,10 +chr2 92641309 . C A 0 PASS DP=195;GPV=1;SPV=0.00067309;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:85,16:30,7:55,9 +chr2 92815545 . A T 0 PASS DP=43;GPV=1;SPV=0.086103;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:1,0:19,4 +chr2 92815587 . T A 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:1,0:24,4 +chr2 92817406 . C T 0 PASS DP=51;GPV=1;SPV=0.050318;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:7,3:19,3 +chr2 92839007 . G T 0 PASS DP=209;GPV=1;SPV=0.0022779;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:82,24:51,12:31,12 +chr2 92956270 . T C 0 PASS DP=100;GPV=1;SPV=0.037798;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:50,5:3,1 +chr2 93026762 . G T 0 PASS DP=46;GPV=1;SPV=0.15427;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,3:6,2:14,1 +chr2 93044283 . T A 0 PASS DP=68;GPV=1;SPV=0.045335;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:6,2:22,7 +chr2 93107130 . G A 0 PASS DP=72;GPV=1;SPV=0.035875;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:7,2:26,3 +chr2 93158796 . T G 0 PASS DP=49;GPV=1;SPV=0.14851;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:2,0:25,4 +chr2 93179369 . G C 0 PASS DP=48;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:5,1:16,3 +chr2 93219004 . T C 0 PASS DP=231;GPV=1;SPV=0.019646;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:108,19:36,8:72,11 +chr2 93259672 . G C 0 PASS DP=71;GPV=1;SPV=0.0097246;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:11,4:15,4 +chr2 93311255 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr2 93346162 . T G 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,5:1,1 +chr2 93454506 . A G 0 PASS DP=30;GPV=1;SPV=0.13793;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:13,3:3,2:10,1 +chr2 93465530 . T A 0 PASS DP=30;GPV=1;SPV=0.28079;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:17,3:11,2:6,1 +chr2 93653271 . T C 0 PASS DP=49;GPV=1;SPV=0.0012238;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:14,8:1,5 +chr2 93753410 . T C 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:1,0:28,4 +chr2 93807122 . G T 0 PASS DP=37;GPV=1;SPV=0.016795;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:2,2:9,5 +chr2 93889142 . G C 0 PASS DP=50;GPV=1;SPV=0.064915;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:21,4:1,0 +chr2 93889691 . T A 0 PASS DP=194;GPV=1;SPV=0.042961;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:79,10:35,6:44,4 +chr2 93962263 . C T 0 PASS DP=133;GPV=1;SPV=0.038189;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:53,9:26,2:27,7 +chr2 94005337 . G C 0 PASS DP=64;GPV=1;SPV=0.0063358;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,6:22,4:1,2 +chr2 94155150 . G A 0 PASS DP=39;GPV=1;SPV=0.12919;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr2 94156095 . T C 0 PASS DP=85;GPV=1;SPV=0.023677;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:21,5:14,8 +chr2 95650859 . T C 0 PASS DP=97;GPV=1;SPV=0.0047322;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:15,7:21,7 +chr2 95858004 . C G 0 PASS DP=98;GPV=1;SPV=0.019345;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:22,2:17,5 +chr2 97583326 . A T 0 PASS DP=35;GPV=1;SPV=0.040085;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:3,4:7,1 +chr2 98036209 . A G 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr2 99867003 . A T 0 PASS DP=52;GPV=1;SPV=0.021859;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:8,9:5,2:3,7 +chr2 103705075 . A T 0 PASS DP=38;GPV=1;SPV=0.023024;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:5,4:8,4 +chr2 105055493 . C T 0 PASS DP=22;GPV=1;SPV=0.026316;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,6:0,1 +chr2 105211096 . ACC A 0 PASS DP=49;GPV=1;SPV=0.16209;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:15,2:7,1 +chr2 105388668 . C CA 0 PASS DP=66;GPV=1;SPV=0.043884;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:12,4:14,2 +chr2 106394427 . A G 0 PASS DP=47;GPV=1;SPV=0.010459;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:19,7:11,3:8,4 +chr2 106823442 . A AACACACACAC 0 PASS DP=35;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,4:10,2:4,2 +chr2 106917333 . C CAAAA 0 PASS DP=42;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:11,6:4,1 +chr2 110306649 . CA C 0 PASS DP=18;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr2 111369841 . C G 0 PASS DP=107;GPV=1;SPV=0.00080463;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:53,14:29,4:24,10 +chr2 111369856 . GCAGGCTGCA G 0 PASS DP=109;GPV=1;SPV=0.022382;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:57,11:32,3:25,8 +chr2 111387092 . A G 0 PASS DP=70;GPV=1;SPV=0.03119;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:14,7:11,3 +chr2 111574482 . C T 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:1,1:5,1 +chr2 111642192 . CAA C 0 PASS DP=38;GPV=1;SPV=0.051826;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,6:10,5:7,1 +chr2 111978449 . T G 0 PASS DP=80;GPV=1;SPV=0.0087027;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:24,9:10,5:14,4 +chr2 112047086 . C CT 0 PASS DP=28;GPV=1;SPV=0.013155;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:6,5:0,1 +chr2 113484023 . G A 0 PASS DP=54;GPV=1;SPV=0.0072523;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:6,3:18,6 +chr2 115985368 . TC T 0 PASS DP=59;GPV=1;SPV=0.0036217;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,9:10,1:14,8 +chr2 116200289 . G A 0 PASS DP=78;GPV=1;SPV=2.1439e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:9,5:13,10 +chr2 116976996 . G GTATATATATA 0 PASS DP=42;GPV=1;SPV=0.0072004;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:6,5:7,4 +chr2 117074818 . C T 0 PASS DP=69;GPV=1;SPV=0.014116;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:18,5:16,3 +chr2 118695940 . A G 0 PASS DP=23;GPV=1;SPV=0.02396;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:5,5:0,1 +chr2 120973017 . C T 0 PASS DP=77;GPV=1;SPV=5.5881e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:11,9:19,8 +chr2 122335347 . G A 0 PASS DP=84;GPV=1;SPV=4.4872e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:34,18:16,11:18,7 +chr2 123234970 . A AT 0 PASS DP=17;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:1,1:3,1 +chr2 123356747 . A T 0 PASS DP=21;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,2:1,1:3,1 +chr2 123414026 . G GAAGAAAGAAAGAAAGAAAGA 0 PASS DP=35;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,2:4,2:0,0 +chr2 124419896 . T TTTTC 0 PASS DP=73;GPV=1;SPV=0.035975;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:6,4:23,5 +chr2 125734514 . T C 0 PASS DP=22;GPV=1;SPV=0.037112;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,7:4,1:0,6 +chr2 125776549 . A ATTTATTTATTTATTTG 0 PASS DP=67;GPV=1;SPV=0.029853;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:16,9:11,1 +chr2 127252159 . C CA 0 PASS DP=30;GPV=1;SPV=0.03908;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:8,5:4,1 +chr2 128816521 . ATATATAATATG A 0 PASS DP=47;GPV=1;SPV=0.083396;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,6:10,3:10,3 +chr2 129272202 . A C 0 PASS DP=61;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,2:1,1:1,1 +chr2 130031192 . G T 0 PASS DP=75;GPV=1;SPV=0.00021386;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:14,7:14,5 +chr2 131270314 . G A 0 PASS DP=88;GPV=1;SPV=0.0091489;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:19,6:17,3 +chr2 131318005 . C T 0 PASS DP=85;GPV=1;SPV=5.7314e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:16,9:10,10 +chr2 131357474 . C T 0 PASS DP=67;GPV=1;SPV=0.022225;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,6:8,3 +chr2 131945583 . A G 0 PASS DP=104;GPV=1;SPV=0.037818;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:48,10:34,8:14,2 +chr2 132016825 . TACA T 0 PASS DP=368;GPV=1;SPV=0.023337;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:199:165,34:84,24:81,10 +chr2 132404802 . C T 0 PASS DP=44;GPV=1;SPV=0.094721;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,4:2,2:13,2 +chr2 132514068 . G A 0 PASS DP=72;GPV=1;SPV=8.1043e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:14,11:8,4 +chr2 133177183 . T TATATATATAC 0 PASS DP=55;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,4:11,3:11,1 +chr2 134869706 . G GTA 0 PASS DP=50;GPV=1;SPV=0.015231;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:9,6:6,3 +chr2 135619021 . C CAA 0 PASS DP=61;GPV=1;SPV=0.026092;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,7:9,6:12,1 +chr2 135975753 . C CA 0 PASS DP=47;GPV=1;SPV=0.0044346;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,9:10,8:2,1 +chr2 136760923 . A G 0 PASS DP=82;GPV=1;SPV=4.0612e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,19:11,5:13,14 +chr2 139139937 . C CAAAA 0 PASS DP=49;GPV=1;SPV=0.026393;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:5,4:8,1 +chr2 140228200 . T A 0 PASS DP=45;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,5:13,1:5,4 +chr2 140228202 . A T 0 PASS DP=45;GPV=1;SPV=0.14178;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,5:14,1:4,4 +chr2 140228204 . T TATATATTC 0 PASS DP=45;GPV=1;SPV=0.17876;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,4:13,1:5,3 +chr2 140228419 . AATAT A 0 PASS DP=53;GPV=1;SPV=0.013346;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:11,10:8,3 +chr2 142111478 . A C 0 PASS DP=88;GPV=1;SPV=1.889e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:15,7:14,11 +chr2 144394989 . CT C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:8,3:1,1 +chr2 144663035 . GTTTATGAAGATGCAAAGTCACATGGCAAATTATCAATATTT G 0 PASS DP=32;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,4:6,3 +chr2 146287171 . C CT 0 PASS DP=70;GPV=1;SPV=2.4395e-06;SS=2;SSC=56;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:8,7:10,7 +chr2 146566577 . G A 0 PASS DP=75;GPV=1;SPV=0.019062;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:16,2:18,4 +chr2 147035532 . GAAGAAAGAAAGAAAGAAAGA G 0 PASS DP=51;GPV=1;SPV=0.027191;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,6:8,5:1,1 +chr2 147611680 . A G 0 PASS DP=86;GPV=1;SPV=6.7474e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:14,12:12,6 +chr2 148294505 . T G 0 PASS DP=32;GPV=1;SPV=0.1114;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,2:6,4 +chr2 150205885 . C CA 0 PASS DP=41;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,5:7,4:6,1 +chr2 151133461 . AGAAAGAAG A 0 PASS DP=48;GPV=1;SPV=0.13357;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:15,2:7,2 +chr2 152719764 . A C 0 PASS DP=68;GPV=1;SPV=0.072331;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:14,2:18,2 +chr2 152923482 . A ATTTT 0 PASS DP=18;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,1:2,3 +chr2 153089504 . G A 0 PASS DP=89;GPV=1;SPV=0.0039417;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:41,9:16,4:25,5 +chr2 154939176 . A ATATATT 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:5,1:1,3 +chr2 154939185 . T A 0 PASS DP=29;GPV=1;SPV=0.029799;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:4,1:2,4 +chr2 155754615 . T TAAATAAAATA 0 PASS DP=78;GPV=1;SPV=0.0090863;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,16:13,10:16,6 +chr2 156352879 . A G 0 PASS DP=89;GPV=1;SPV=0.035679;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:23,10:11,2 +chr2 157611849 . G T 0 PASS DP=94;GPV=1;SPV=3.0975e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:33,18:15,5:18,13 +chr2 158000067 . A T 0 PASS DP=76;GPV=1;SPV=0.057534;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:24,3:10,1 +chr2 159324625 . TAC T 0 PASS DP=36;GPV=1;SPV=0.10613;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,5:8,2:5,3 +chr2 161660592 . C CT 0 PASS DP=69;GPV=1;SPV=0.027649;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,7:3,5:20,2 +chr2 162558175 . CT C 0 PASS DP=69;GPV=1;SPV=5.9786e-05;SS=2;SSC=42;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,7:9,6 +chr2 162954239 . G A 0 PASS DP=68;GPV=1;SPV=1.0094e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,11:11,6 +chr2 165923743 . G GTT 0 PASS DP=50;GPV=1;SPV=0.01607;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:8,8:11,1 +chr2 166312986 . AATT A 0 PASS DP=82;GPV=1;SPV=0.027465;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:18,1:18,4 +chr2 168867808 . T C 0 PASS DP=93;GPV=1;SPV=0.014044;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:14,6:29,4 +chr2 168867850 . A G 0 PASS DP=96;GPV=1;SPV=0.019385;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:16,9:24,4 +chr2 168975468 . GATAAATAT G 0 PASS DP=88;GPV=1;SPV=0.023608;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,8:14,2:18,6 +chr2 169277193 . CA C 0 PASS DP=34;GPV=1;SPV=0.031734;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:5,10:3,9:2,1 +chr2 170519972 . CA C 0 PASS DP=45;GPV=1;SPV=0.0083519;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:9,9:4,8:5,1 +chr2 170543495 . C T 0 PASS DP=73;GPV=1;SPV=1.6518e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:10,6:13,8 +chr2 171081852 . TTG T 0 PASS DP=86;GPV=1;SPV=3.8083e-07;SS=2;SSC=64;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:9,8:15,9 +chr2 171851511 . G A 0 PASS DP=69;GPV=1;SPV=0.055194;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,5:6,3:14,2 +chr2 172109645 . C G 0 PASS DP=73;GPV=1;SPV=0.083965;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,1:20,3 +chr2 172568327 . C CA 0 PASS DP=49;GPV=1;SPV=0.033264;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,6:8,5:5,1 +chr2 172914319 . ATTT A 0 PASS DP=39;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,2:6,2 +chr2 173192079 . A G 0 PASS DP=82;GPV=1;SPV=0.0062765;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:25,10:14,5:11,5 +chr2 174423777 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:8,1:6,3 +chr2 175313335 . A G 0 PASS DP=92;GPV=1;SPV=0.0014181;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:22,6:20,5 +chr2 177592339 . T G 0 PASS DP=90;GPV=1;SPV=2.8928e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:17,10:10,9 +chr2 177631599 . A ATG 0 PASS DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:5,2:2,3 +chr2 180164419 . C CTGTGTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.0025987;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:3,6:3,3 +chr2 180329767 . C A 0 PASS DP=72;GPV=1;SPV=4.2691e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:13,3:8,8 +chr2 184134307 . G GTT 0 PASS DP=97;GPV=1;SPV=0.012316;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:33,16:19,8:14,8 +chr2 185526322 . G A 0 PASS DP=85;GPV=1;SPV=2.1162e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,16:15,9:11,7 +chr2 186851520 . A C 0 PASS DP=50;GPV=1;SPV=0.35897;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:6,2:3,1:3,1 +chr2 187406187 . C CAA 0 PASS DP=59;GPV=1;SPV=0.01206;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:14,8:12,6 +chr2 190314330 . T TAC 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr2 190665678 . C G 0 PASS DP=91;GPV=1;SPV=0.00013696;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:19,9:17,4 +chr2 192188507 . T A 0 PASS DP=103;GPV=1;SPV=3.3802e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:31,29:12,11:19,18 +chr2 192682970 . A C 0 PASS DP=67;GPV=1;SPV=0.053387;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:12,3:17,1 +chr2 192682971 . T C 0 PASS DP=62;GPV=1;SPV=0.064462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,3:17,1 +chr2 195740603 . G A 0 PASS DP=29;GPV=1;SPV=0.1037;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:9,1:3,3 +chr2 195848382 . C T 0 PASS DP=94;GPV=1;SPV=8.9593e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:38,22:15,8:23,14 +chr2 197072046 . A G 0 PASS DP=39;GPV=1;SPV=0.0078247;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,9:4,2:3,7 +chr2 200522366 . TTC T 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:8,1:17,3 +chr2 200683642 . C CCA 0 PASS DP=54;GPV=1;SPV=0.065739;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:19,3:8,1:11,2 +chr2 201101362 . C CTT 0 PASS DP=40;GPV=1;SPV=0.023137;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:7,8:8,2 +chr2 201694608 . C CTT 0 PASS DP=27;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:2,2:5,4 +chr2 202675445 . C CAAA 0 PASS DP=31;GPV=1;SPV=0.034533;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:3,4:2,1 +chr2 203482018 . AC A 0 PASS DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,3:14,1 +chr2 205730824 . C T 0 PASS DP=79;GPV=1;SPV=1.9377e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:9,14:13,6 +chr2 206249562 . ATT A 0 PASS DP=64;GPV=1;SPV=0.003241;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,12:12,10:8,2 +chr2 206315513 . C CA 0 PASS DP=49;GPV=1;SPV=0.00039944;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,16:7,9:4,7 +chr2 208176963 . A ATC 0 PASS DP=39;GPV=1;SPV=0.02914;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,8:9,3:3,5 +chr2 208237764 . C CAA 0 PASS DP=41;GPV=1;SPV=0.0093762;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,8:6,5:5,3 +chr2 208818593 . CTGCT C 0 PASS DP=55;GPV=1;SPV=0.16667;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:0,1:2,1 +chr2 209091906 . GAT G 0 PASS DP=48;GPV=1;SPV=0.10523;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,1:11,3 +chr2 209925100 . T G 0 PASS DP=64;GPV=1;SPV=0.00029281;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:9,3:12,7 +chr2 210978778 . C CTTTT 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:0,3:7,3 +chr2 211401493 . G A 0 PASS DP=70;GPV=1;SPV=0.0014707;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:16,5:9,3 +chr2 212204816 . C CTT 0 PASS DP=29;GPV=1;SPV=0.10288;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:11,4:3,2 +chr2 212510205 . G GTATATA 0 PASS DP=26;GPV=1;SPV=0.17622;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,4:4,3:1,1 +chr2 213980478 . T C 0 PASS DP=52;GPV=1;SPV=0.010483;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,8:9,3:14,5 +chr2 216031691 . G GAA 0 PASS DP=37;GPV=1;SPV=0.11624;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:12,2:1,2 +chr2 218684106 . C CT 0 PASS DP=26;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,7:3,5:3,2 +chr2 219043934 . C T 0 PASS DP=62;GPV=1;SPV=0.046518;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:11,7:7,6:4,1 +chr2 219262643 . G A 0 PASS DP=85;GPV=1;SPV=4.6565e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,23:13,14:11,9 +chr2 219822906 . C CTTTT 0 PASS DP=33;GPV=1;SPV=0.020898;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,10:1,5:3,5 +chr2 220013230 . CT C 0 PASS DP=37;GPV=1;SPV=0.0093841;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:2,3:13,7 +chr2 220013251 . C CTT 0 PASS DP=40;GPV=1;SPV=0.0065417;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:10,9:4,2:6,7 +chr2 220400875 . G GTT 0 PASS DP=20;GPV=1;SPV=0.043344;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:2,3:4,1 +chr2 223654163 . CT C 0 PASS DP=30;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:11,3:3,1 +chr2 223789835 . CA C 0 PASS DP=47;GPV=1;SPV=0.016427;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:10,9:5,1 +chr2 223866479 . C CTTCT 0 PASS DP=45;GPV=1;SPV=0.007794;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,11:2,3:10,8 +chr2 224166291 . C G 0 PASS DP=76;GPV=1;SPV=0.00017003;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:32,17:12,12:20,5 +chr2 225126009 . CTTTTTTTT C 0 PASS DP=24;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,10:3,9:1,1 +chr2 225758347 . CGTGGTGGCGGG C 0 PASS DP=62;GPV=1;SPV=0.00082087;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:18,8:6,3 +chr2 226041206 . C A 0 PASS DP=93;GPV=1;SPV=0.0038251;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:13,3:30,6 +chr2 227730181 . C T 0 PASS DP=82;GPV=1;SPV=0.034157;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:28,2:9,9 +chr2 227745978 . G T 0 PASS DP=58;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:28:0,2:0,1:0,1 +chr2 227762536 . T TCTTTC 0 PASS DP=49;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:1,2:0,1:1,1 +chr2 228092463 . TGTGCC T 0 PASS DP=25;GPV=1;SPV=0.11647;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,1:5,4 +chr2 228271845 . G T 0 PASS DP=84;GPV=1;SPV=4.2648e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:12,11:13,8 +chr2 228501735 . T C 0 PASS DP=28;GPV=1;SPV=0.042236;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:3,3:6,7 +chr2 228505700 . G A 0 PASS DP=82;GPV=1;SPV=2.6974e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:15,11:12,2 +chr2 228867416 . C CT 0 PASS DP=74;GPV=1;SPV=0.0015605;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,7:13,3 +chr2 229762700 . G A 0 PASS DP=92;GPV=1;SPV=2.7847e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:38,19:25,5:13,14 +chr2 229938845 . T C 0 PASS DP=51;GPV=1;SPV=0.16375;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:17,2:12,2 +chr2 231692705 . T G 0 PASS DP=63;GPV=1;SPV=0.019794;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:19,3:9,3 +chr2 231848489 . C T 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,4:9,1 +chr2 233321986 . TACACACACACACACACACACAC T 0 PASS DP=38;GPV=1;SPV=0.0046784;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,11:3,9:3,2 +chr2 234297597 . C CCCTTTCTTTCTTTCTT 0 PASS DP=54;GPV=1;SPV=0.020443;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,2:14,3 +chr2 235358886 . T A 0 PASS DP=61;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:3,2:1,1:2,1 +chr2 235746377 . CTTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.0052174;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:2,6:5,1 +chr2 236416721 . TTATA T 0 PASS DP=19;GPV=1;SPV=0.069231;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,4:4,2:1,2 +chr2 236808656 . C T 0 PASS DP=79;GPV=1;SPV=0.00021594;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:30,12:12,6:18,6 +chr2 237578900 . A AAC 0 PASS DP=65;GPV=1;SPV=0.001961;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:18,9:11,3 +chr2 239185034 . G T 0 PASS DP=63;GPV=1;SPV=0.41667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:4,2:4,2:0,0 +chr2 239253765 . T A 0 PASS DP=79;GPV=1;SPV=1.6295e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,12:13,6:10,6 +chr2 240672171 . G A 0 PASS DP=107;GPV=1;SPV=1.0492e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:33,25:21,12:12,13 +chr2 241392949 . G GA 0 PASS DP=46;GPV=1;SPV=0.043687;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,14:4,9:15,5 +chr2 242169565 . T TG 0 PASS DP=85;GPV=1;SPV=0.011252;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:17,3:20,7 +chr20 1421653 . C T 0 PASS DP=82;GPV=1;SPV=0.00021937;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:17,8:17,6 +chr20 1668219 . C CTTTTTCTTTTCT 0 PASS DP=55;GPV=1;SPV=0.31002;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,4:11,2:13,2 +chr20 2854238 . T TACACACACACACACACACACAC 0 PASS DP=52;GPV=1;SPV=0.042868;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:8,3:7,3 +chr20 2910020 . TCTATC T 0 PASS DP=45;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,4:7,1:13,3 +chr20 3597071 . T TATATATATATATATATATAA 0 PASS DP=47;GPV=1;SPV=0.027099;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,8:7,3:9,5 +chr20 3648606 . C T 0 PASS DP=95;GPV=1;SPV=7.5915e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,22:13,7:16,15 +chr20 3724489 . G A 0 PASS DP=33;GPV=1;SPV=0.048994;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:7,4:8,2 +chr20 3724490 . A G 0 PASS DP=36;GPV=1;SPV=0.069853;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr20 4032934 . C T 0 PASS DP=28;GPV=1;SPV=0.14945;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:2,1:12,3 +chr20 4055300 . C CAAAA 0 PASS DP=50;GPV=1;SPV=0.01279;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,8:13,7:1,1 +chr20 5213537 . AGTGTGTGTGTGTGT A 0 PASS DP=35;GPV=1;SPV=0.020229;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,11:0,9:6,2 +chr20 5266921 . A C 0 PASS DP=52;GPV=1;SPV=0.15115;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,3:10,1 +chr20 5266924 . G C 0 PASS DP=59;GPV=1;SPV=0.18072;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:22,3:13,1 +chr20 5672704 . ATTTTATT A 0 PASS DP=54;GPV=1;SPV=0.064915;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:7,3:15,1 +chr20 5959690 . CT C 0 PASS DP=36;GPV=1;SPV=0.0023297;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,6:6,1 +chr20 6318106 . T C 0 PASS DP=56;GPV=1;SPV=0.084986;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:10,1:20,4 +chr20 7022334 . CA C 0 PASS DP=75;GPV=1;SPV=0.10523;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,4:18,2:6,2 +chr20 10479355 . T TTTTC 0 PASS DP=66;GPV=1;SPV=0.0055953;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:15,8:7,4 +chr20 11065849 . A G 0 PASS DP=100;GPV=1;SPV=6.9242e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:38,18:16,5:22,13 +chr20 11507909 . TATATACAC T 0 PASS DP=32;GPV=1;SPV=0.037596;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:4,2:6,5 +chr20 12364160 . G A 0 PASS DP=83;GPV=1;SPV=2.9635e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:16,9:13,5 +chr20 12755372 . A G 0 PASS DP=50;GPV=1;SPV=0.018628;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,3:11,3 +chr20 13159970 . CT C 0 PASS DP=86;GPV=1;SPV=0.033108;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:26,4:13,1 +chr20 13627733 . T TAAAAAAAAAAAA 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:16,3:11,1 +chr20 13934341 . T TC 0 PASS DP=68;GPV=1;SPV=0.052565;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,6:10,4:26,2 +chr20 14083122 . A T 0 PASS DP=58;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:3,2:2,1:1,1 +chr20 14190702 . T A 0 PASS DP=24;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:1,2:0,1:1,1 +chr20 16410036 . C CAT 0 PASS DP=16;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,2:3,1:2,1 +chr20 16671238 . A C 0 PASS DP=58;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,2:0,1:7,1 +chr20 17294499 . T G 0 PASS DP=83;GPV=1;SPV=1.0237e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:12,8:13,5 +chr20 19844619 . T C 0 PASS DP=52;GPV=1;SPV=0.10103;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:5,2:23,3 +chr20 19984000 . G A 0 PASS DP=47;GPV=1;SPV=0.043779;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:6,2:9,5 +chr20 21721607 . CATAT C 0 PASS DP=29;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:6,6:4,1 +chr20 21748369 . T G 0 PASS DP=72;GPV=1;SPV=0.0003586;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:8,3:13,5 +chr20 23526154 . T G 0 PASS DP=67;GPV=1;SPV=6.589e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:12,7:8,4 +chr20 23683258 . G A 0 PASS DP=86;GPV=1;SPV=0.035082;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:15,3:25,2 +chr20 24508218 . A ATT 0 PASS DP=25;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,6:5,5:2,1 +chr20 25388787 . C CTTT 0 PASS DP=40;GPV=1;SPV=0.016242;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,10:4,7:8,3 +chr20 25792739 . A G 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr20 26237768 . A T 0 PASS DP=86;GPV=1;SPV=0.03936;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:22,2:19,3 +chr20 26894806 . C A 0 PASS DP=27;GPV=1;SPV=0.037198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:6,1:4,4 +chr20 27057752 . A T 0 PASS DP=21;GPV=1;SPV=0.11947;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:0,0:9,4 +chr20 27213207 . G A 0 PASS DP=196;GPV=1;SPV=9.5044e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:94,15:32,4:62,11 +chr20 27213245 . T C 0 PASS DP=185;GPV=1;SPV=0.011213;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:84,16:33,3:51,13 +chr20 28531506 . G A 0 PASS DP=540;GPV=1;SPV=0.031934;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:315:266,33:107,13:159,20 +chr20 28601114 . C T 0 PASS DP=274;GPV=1;SPV=0.012392;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:133:106,27:39,3:67,24 +chr20 28624166 . C T 0 PASS DP=444;GPV=1;SPV=0.022899;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:194,32:120,14:74,18 +chr20 28639014 . A C 0 PASS DP=223;GPV=1;SPV=0.01847;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:89,18:36,7:53,11 +chr20 28839977 . GT G 0 PASS DP=202;GPV=1;SPV=0.046076;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:92,18:35,7:57,11 +chr20 28889768 . C CCATTCCATTT 0 PASS DP=147;GPV=1;SPV=0.0080696;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:66,10:32,6:34,4 +chr20 29091576 . ATCAT A 0 PASS DP=371;GPV=1;SPV=0.02386;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:191:160,31:84,14:76,17 +chr20 29114498 . C T 0 PASS DP=328;GPV=1;SPV=0.034198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:139,26:63,13:76,13 +chr20 29124918 . G A 0 PASS DP=378;GPV=1;SPV=0.021382;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:205:169,36:94,19:75,17 +chr20 29504644 . AAAATT A 0 PASS DP=71;GPV=1;SPV=0.0059872;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:17,3:16,6 +chr20 29515438 . G A 0 PASS DP=119;GPV=1;SPV=0.006436;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:57,8:32,5:25,3 +chr20 29898556 . G A 0 PASS DP=324;GPV=1;SPV=0.015448;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:150,24:77,17:73,7 +chr20 29920296 . A G 0 PASS DP=34;GPV=1;SPV=0.10447;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:16,4:0,0 +chr20 29972768 . T A 0 PASS DP=87;GPV=1;SPV=0.0032969;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:13,9:18,6 +chr20 30415770 . A T 0 PASS DP=143;GPV=1;SPV=0.029803;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:67,10:32,2:35,8 +chr20 30864416 . A G 0 PASS DP=224;GPV=1;SPV=0.030834;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:103,17:43,9:60,8 +chr20 30907965 . ATTCT A 0 PASS DP=60;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,5:3,2:14,3 +chr20 31055102 . C T 0 PASS DP=255;GPV=1;SPV=0.044983;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:120,18:58,11:62,7 +chr20 31070023 . G A 0 PASS DP=131;GPV=1;SPV=0.0041726;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:43,16:26,10:17,6 +chr20 31070181 . G T 0 PASS DP=149;GPV=1;SPV=0.0078692;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:56,15:29,7:27,8 +chr20 31090625 . A G 0 PASS DP=41;GPV=1;SPV=0.012456;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:7,2:6,6 +chr20 31580080 . A AT 0 PASS DP=34;GPV=1;SPV=0.036825;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:4,4:8,4 +chr20 33699579 . C T 0 PASS DP=33;GPV=1;SPV=0.025586;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,6:5,3 +chr20 33764545 . A G 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:6,4:0,1 +chr20 33793413 . G C 0 PASS DP=97;GPV=1;SPV=0.00018052;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:25,6:15,7 +chr20 34305122 . T C 0 PASS DP=57;GPV=1;SPV=0.013828;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:21,5:7,4 +chr20 34385222 . G GTT 0 PASS DP=27;GPV=1;SPV=0.12771;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:5,2:3,2 +chr20 34584504 . CT C 0 PASS DP=33;GPV=1;SPV=0.10105;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,4:5,1 +chr20 37507861 . G GGTGTGTGT 0 PASS DP=37;GPV=1;SPV=0.13094;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,7:7,6:7,1 +chr20 37603317 . C T 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4 +chr20 37747378 . CA C 0 PASS DP=29;GPV=1;SPV=0.25199;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:12,3:5,1 +chr20 37965858 . G GTT 0 PASS DP=37;GPV=1;SPV=0.08112;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,3:9,2 +chr20 38020327 . T A 0 PASS DP=30;GPV=1;SPV=0.081597;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:6,4:8,1 +chr20 38600200 . CACCT C 0 PASS DP=78;GPV=1;SPV=0.064069;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:21,2:15,2 +chr20 41689410 . G A 0 PASS DP=75;GPV=1;SPV=1.7194e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:11,6:11,11 +chr20 43176217 . T C 0 PASS DP=28;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:9,2:1,3 +chr20 43668194 . CTTT C 0 PASS DP=35;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,6:6,5:5,1 +chr20 44745427 . G A 0 PASS DP=24;GPV=1;SPV=0.01087;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,4:1,1 +chr20 45369596 . CTTTTTT C 0 PASS DP=30;GPV=1;SPV=0.029563;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:5,5:4,2 +chr20 45742354 . C CTG 0 PASS DP=42;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:7,6:7,2 +chr20 45863169 . G GT 0 PASS DP=88;GPV=1;SPV=0.031655;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,1:17,3 +chr20 46124751 . GTTTTT G 0 PASS DP=36;GPV=1;SPV=0.091143;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,6:11,3:6,3 +chr20 46163323 . A C 0 PASS DP=91;GPV=1;SPV=5.7714e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:15,8:16,8 +chr20 46273335 . G C 0 PASS DP=98;GPV=1;SPV=3.1409e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:35,18:20,10:15,8 +chr20 47890440 . C A 0 PASS DP=75;GPV=1;SPV=0.060943;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:42,6:21,4:21,2 +chr20 48220906 . C CA 0 PASS DP=34;GPV=1;SPV=0.030046;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,14:5,12:5,2 +chr20 48222211 . CT C 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:20,2:2,2 +chr20 48505407 . C A 0 PASS DP=47;GPV=1;SPV=0.15365;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:9,3:17,1 +chr20 48933905 . G A 0 PASS DP=98;GPV=1;SPV=1.2638e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:36,22:23,11:13,11 +chr20 49129280 . A ATT 0 PASS DP=33;GPV=1;SPV=0.057842;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:8,1:4,3 +chr20 52314969 . CTCTCTCTCTCTCTG C 0 PASS DP=31;GPV=1;SPV=0.047619;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,3:0,1:0,2 +chr20 52383847 . C T 0 PASS DP=34;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,2:1,2:0,0 +chr20 52900213 . T TTTTCTTTC 0 PASS DP=66;GPV=1;SPV=0.040748;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,7:14,2:12,5 +chr20 53845411 . G GTTTTTT 0 PASS DP=28;GPV=1;SPV=0.011401;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:6,5:0,2 +chr20 54842880 . A T 0 PASS DP=71;GPV=1;SPV=0.040883;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,6:10,1:15,5 +chr20 55314528 . CA C 0 PASS DP=71;GPV=1;SPV=0.0077416;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:15,2:15,5 +chr20 55514525 . A T 0 PASS DP=54;GPV=1;SPV=0.10265;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,4:13,1 +chr20 55514526 . A T 0 PASS DP=59;GPV=1;SPV=0.064844;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:17,4:13,1 +chr20 57669142 . C CATTTATTTATTTATTT 0 PASS DP=59;GPV=1;SPV=0.076076;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,6:20,4:12,2 +chr20 58473712 . G C 0 PASS DP=81;GPV=1;SPV=0.00069954;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:23,6:13,7 +chr20 58660713 . C CT 0 PASS DP=23;GPV=1;SPV=0.00387;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,1:2,3 +chr20 58979628 . A AC 0 PASS DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:22,2:2,3 +chr20 60507281 . T C 0 PASS DP=42;GPV=1;SPV=0.17876;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,4:9,1:9,3 +chr20 62341039 . AAAATAAATAAATAAAT A 0 PASS DP=52;GPV=1;SPV=0.025865;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,9:17,3:4,6 +chr20 63068602 . C G 0 PASS DP=113;GPV=1;SPV=0.031417;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:36,1:21,8 +chr20 64195401 . C CTTTTTT 0 PASS DP=23;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,5:0,3:4,2 +chr21 5220172 . T G 0 PASS DP=419;GPV=1;SPV=0.01533;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:179,31:89,18:90,13 +chr21 5232760 . G A 0 PASS DP=303;GPV=1;SPV=0.011403;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:133,21:69,13:64,8 +chr21 5270148 . A G 0 PASS DP=100;GPV=1;SPV=0.01767;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:43,14:21,6:22,8 +chr21 6361949 . C T 0 PASS DP=490;GPV=1;SPV=0.0088782;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:275:247,28:118,14:129,14 +chr21 7218911 . T C 0 PASS DP=54;GPV=1;SPV=0.040797;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:21,7:4,3 +chr21 7246044 . G A 0 PASS DP=264;GPV=1;SPV=0.038198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:131,16:73,9:58,7 +chr21 7252722 . C A 0 PASS DP=113;GPV=1;SPV=0.010036;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:50,16:35,11:15,5 +chr21 7281326 . T C 0 PASS DP=195;GPV=1;SPV=0.040746;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:98,15:48,11:50,4 +chr21 7315101 . A G 0 PASS DP=175;GPV=1;SPV=0.031233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:74,20:39,7:35,13 +chr21 7318116 . T C 0 PASS DP=194;GPV=1;SPV=0.028389;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:85,21:48,11:37,10 +chr21 7916759 . A G 0 PASS DP=203;GPV=1;SPV=0.015515;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:95,24:51,14:44,10 +chr21 7928708 . TC T 0 PASS DP=199;GPV=1;SPV=0.02013;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:113:93,20:45,10:48,10 +chr21 7942110 . C T 0 PASS DP=226;GPV=1;SPV=7.5651e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:104,14:52,3:52,11 +chr21 7946994 . C G 0 PASS DP=237;GPV=1;SPV=0.011018;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:91,23:49,10:42,13 +chr21 7947020 . C T 0 PASS DP=235;GPV=1;SPV=0.018736;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:96,22:48,11:48,11 +chr21 7948925 . C T 0 PASS DP=256;GPV=1;SPV=0.016707;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:140:114,26:62,20:52,6 +chr21 7950849 . TC T 0 PASS DP=207;GPV=1;SPV=0.0099971;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:80,23:41,11:39,12 +chr21 7950853 . TTCCA T 0 PASS DP=171;GPV=1;SPV=0.0099623;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:65,20:39,9:26,11 +chr21 7957223 . T A 0 PASS DP=141;GPV=1;SPV=0.038297;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:36,12:14,5:22,7 +chr21 7958453 . C T 0 PASS DP=444;GPV=1;SPV=0.014015;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:217,39:120,22:97,17 +chr21 8021953 . C T 0 PASS DP=168;GPV=1;SPV=0.010888;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:72,23:59,11:13,12 +chr21 8033537 . A T 0 PASS DP=55;GPV=1;SPV=0.022245;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:7,2:13,5 +chr21 8036516 . G T 0 PASS DP=88;GPV=1;SPV=0.016292;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:35,10:23,1:12,9 +chr21 8575932 . C A 0 PASS DP=42;GPV=1;SPV=0.15679;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:0,0:23,4 +chr21 8615202 . G A 0 PASS DP=175;GPV=1;SPV=0.018379;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:89:71,18:40,9:31,9 +chr21 8766338 . C T 0 PASS DP=421;GPV=1;SPV=0.01124;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:204:175,29:73,13:102,16 +chr21 8766772 . C A 0 PASS DP=149;GPV=1;SPV=0.00013834;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:62,12:47,5:15,7 +chr21 8783934 . G T 0 PASS DP=380;GPV=1;SPV=0.0071481;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:174,23:68,9:106,14 +chr21 8786423 . TTCC T 0 PASS DP=259;GPV=1;SPV=0.037144;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:118,21:70,9:48,12 +chr21 8827093 . T G 0 PASS DP=162;GPV=1;SPV=0.041463;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:88,16:54,12:34,4 +chr21 8837938 . G A 0 PASS DP=422;GPV=1;SPV=0.048908;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:240:215,25:139,19:76,6 +chr21 8840952 . G A 0 PASS DP=392;GPV=1;SPV=0.035916;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:166,31:66,8:100,23 +chr21 8845647 . A T 0 PASS DP=63;GPV=1;SPV=0.035906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,7:8,2 +chr21 8850770 . G C 0 PASS DP=126;GPV=1;SPV=0.039474;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:10,2:43,10 +chr21 8858565 . G C 0 PASS DP=554;GPV=1;SPV=0.006701;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:263,37:162,24:101,13 +chr21 8861884 . T C 0 PASS DP=317;GPV=1;SPV=0.01295;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:175:151,24:49,15:102,9 +chr21 8881102 . AC A 0 PASS DP=367;GPV=1;SPV=0.0046877;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:195:170,25:118,17:52,8 +chr21 9000317 . A T 0 PASS DP=382;GPV=1;SPV=0.022287;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:202:178,24:94,15:84,9 +chr21 9000360 . C T 0 PASS DP=451;GPV=1;SPV=0.036817;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:256:225,31:121,17:104,14 +chr21 9000802 . C A 0 PASS DP=384;GPV=1;SPV=0.025601;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:174,24:91,8:83,16 +chr21 9000994 . CTGGGAAAACTGGCT C 0 PASS DP=371;GPV=1;SPV=0.0061423;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:197:171,26:75,6:96,20 +chr21 9001046 . A G 0 PASS DP=364;GPV=1;SPV=0.033603;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:196:174,22:73,4:101,18 +chr21 9011684 . C T 0 PASS DP=484;GPV=1;SPV=0.033479;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:252:224,28:120,17:104,11 +chr21 9011923 . C T 0 PASS DP=411;GPV=1;SPV=0.0084415;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:207:181,26:82,13:99,13 +chr21 9019913 . C T 0 PASS DP=407;GPV=1;SPV=0.041809;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:210:186,24:90,11:96,13 +chr21 9033212 . G A 0 PASS DP=434;GPV=1;SPV=0.0085647;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:204,23:102,15:102,8 +chr21 9043378 . G A 0 PASS DP=498;GPV=1;SPV=0.0059937;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:253:217,36:106,20:111,16 +chr21 9084596 . G GTGTGTGTGTGTGTT 0 PASS DP=199;GPV=1;SPV=0.028334;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:68,17:20,6:48,11 +chr21 9092235 . A C 0 PASS DP=461;GPV=1;SPV=0.025641;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:225:198,27:89,7:109,20 +chr21 9096011 . T C 0 PASS DP=241;GPV=1;SPV=0.0057924;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:107,23:53,11:54,12 +chr21 9102967 . T C 0 PASS DP=480;GPV=1;SPV=0.027549;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:229:202,27:120,21:82,6 +chr21 9124467 . G T 0 PASS DP=625;GPV=1;SPV=0.049959;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:304:272,32:153,18:119,14 +chr21 9136435 . G A 0 PASS DP=491;GPV=1;SPV=0.011234;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:245:220,25:127,16:93,9 +chr21 9154575 . C T 0 PASS DP=678;GPV=1;SPV=0.019822;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:360:316,44:153,19:163,25 +chr21 9157822 . C G 0 PASS DP=409;GPV=1;SPV=0.01118;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:177,21:100,15:77,6 +chr21 9177607 . A G 0 PASS DP=493;GPV=1;SPV=0.0076654;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:230:197,33:89,16:108,17 +chr21 9184712 . C A 0 PASS DP=446;GPV=1;SPV=0.027931;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:246:219,27:107,13:112,14 +chr21 9253945 . T G 0 PASS DP=709;GPV=1;SPV=0.028605;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:394:352,42:122,21:230,21 +chr21 9268439 . C A 0 PASS DP=593;GPV=1;SPV=0.027544;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:318:269,49:123,29:146,20 +chr21 9270905 . T A 0 PASS DP=382;GPV=1;SPV=0.021248;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:190:163,27:59,14:104,13 +chr21 9272226 . C G 0 PASS DP=316;GPV=1;SPV=0.0044996;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:137,21:57,3:80,18 +chr21 9272460 . A G 0 PASS DP=265;GPV=1;SPV=0.046025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:124,24:64,4:60,20 +chr21 9309037 . G A 0 PASS DP=496;GPV=1;SPV=0.04638;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:266:239,27:124,16:115,11 +chr21 9317266 . A T 0 PASS DP=466;GPV=1;SPV=0.010295;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:245:219,26:131,19:88,7 +chr21 9323107 . G A 0 PASS DP=648;GPV=1;SPV=0.014018;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:341:291,50:139,33:152,17 +chr21 9324423 . G A 0 PASS DP=496;GPV=1;SPV=0.01913;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:267:240,27:152,19:88,8 +chr21 9334862 . C T 0 PASS DP=469;GPV=1;SPV=0.026473;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:228:205,23:88,7:117,16 +chr21 9347264 . G T 0 PASS DP=523;GPV=1;SPV=0.0085766;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:285:250,35:119,17:131,18 +chr21 9351081 . C A 0 PASS DP=508;GPV=1;SPV=0.016554;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:292:259,33:144,16:115,17 +chr21 9357060 . T A 0 PASS DP=531;GPV=1;SPV=0.012241;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:278:248,30:134,16:114,14 +chr21 9367890 . C T 0 PASS DP=713;GPV=1;SPV=0.024546;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:355:309,42:137,14:172,28 +chr21 9369275 . G A 0 PASS DP=918;GPV=1;SPV=0.031693;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:495:440,55:201,22:239,33 +chr21 9373504 . G GAGAT 0 PASS DP=473;GPV=1;SPV=0.048323;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:262:235,27:109,4:126,23 +chr21 9564852 . A T 0 PASS DP=201;GPV=1;SPV=0.0036247;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:75,23:35,13:40,10 +chr21 9574243 . C A 0 PASS DP=205;GPV=1;SPV=0.0017606;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:41,14:34,6 +chr21 9576700 . G A 0 PASS DP=286;GPV=1;SPV=0.014616;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:135,17:66,8:69,9 +chr21 9581253 . T C 0 PASS DP=116;GPV=1;SPV=0.044808;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:54,7:30,5:24,2 +chr21 9591067 . A ATAGACACAAGGTTTCACTATAT 0 PASS DP=115;GPV=1;SPV=0.038826;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:47,8:20,5:27,3 +chr21 9606696 . A G 0 PASS DP=195;GPV=1;SPV=0.015765;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:84,20:40,9:44,11 +chr21 9673062 . T C 0 PASS DP=185;GPV=1;SPV=0.017581;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:98:77,21:35,12:42,9 +chr21 9715188 . G A 0 PASS DP=219;GPV=1;SPV=8.7935e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:83,35:41,12:42,23 +chr21 9765769 . T G 0 PASS DP=142;GPV=1;SPV=0.010687;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:61,19:46,16:15,3 +chr21 9819014 . G C 0 PASS DP=1593;GPV=1;SPV=0.041702;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:856:766,90:347,37:419,53 +chr21 9854292 . G A 0 PASS DP=204;GPV=1;SPV=0.038086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:112:90,22:51,14:39,8 +chr21 9857848 . G A 0 PASS DP=208;GPV=1;SPV=0.016928;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:91,25:39,7:52,18 +chr21 9883337 . G A 0 PASS DP=210;GPV=1;SPV=0.0094936;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:115:91,24:41,12:50,12 +chr21 9895530 . A T 0 PASS DP=192;GPV=1;SPV=0.0054636;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:84,22:29,8:55,14 +chr21 9910990 . A G 0 PASS DP=164;GPV=1;SPV=0.011682;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:69,22:38,10:31,12 +chr21 9923103 . T C 0 PASS DP=198;GPV=1;SPV=0.0042647;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:80,24:32,13:48,11 +chr21 9929347 . A C 0 PASS DP=194;GPV=1;SPV=0.0051875;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:110:83,27:42,10:41,17 +chr21 9973003 . C T 0 PASS DP=207;GPV=1;SPV=0.023625;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:97,25:36,17:61,8 +chr21 9981102 . CTTTCTT C 0 PASS DP=88;GPV=1;SPV=0.048675;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:5,1:39,4 +chr21 10122235 . C T 0 PASS DP=178;GPV=1;SPV=0.012779;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:73,22:38,13:35,9 +chr21 10137758 . C T 0 PASS DP=242;GPV=1;SPV=0.041384;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:106,24:39,9:67,15 +chr21 10139215 . C T 0 PASS DP=228;GPV=1;SPV=0.049177;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:119:107,12:60,10:47,2 +chr21 10325690 . C T 0 PASS DP=308;GPV=1;SPV=0.038903;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:140,24:70,13:70,11 +chr21 10331097 . A G 0 PASS DP=452;GPV=1;SPV=0.026031;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:243:211,32:96,13:115,19 +chr21 10333449 . TCTC T 0 PASS DP=408;GPV=1;SPV=0.028843;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:233:206,27:112,13:94,14 +chr21 10370486 . T TTATC 0 PASS DP=80;GPV=1;SPV=0.045325;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,10:9,8:19,2 +chr21 10372845 . A AAAAAGAAAAGAAAAG 0 PASS DP=174;GPV=1;SPV=0.024544;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:85:72,9:47,8:25,1 +chr21 10374957 . G C 0 PASS DP=278;GPV=1;SPV=0.0063768;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:150:122,28:52,4:70,24 +chr21 10410279 . C A 0 PASS DP=280;GPV=1;SPV=0.032388;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:157:135,22:61,11:74,11 +chr21 10440223 . A G 0 PASS DP=494;GPV=1;SPV=0.049025;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:282:250,32:101,16:149,16 +chr21 10453718 . G A 0 PASS DP=426;GPV=1;SPV=0.031111;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:230:206,24:107,14:99,10 +chr21 10675252 . C G 0 PASS DP=87;GPV=1;SPV=0.0012943;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:37,10:19,8:18,2 +chr21 10691179 . A T 0 PASS DP=171;GPV=1;SPV=0.0042448;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:70,21:31,10:39,11 +chr21 10733585 . CCATTCCATTCCATTCCAT C 0 PASS DP=180;GPV=1;SPV=0.02107;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:77,17:41,5:36,12 +chr21 10756286 . G C 0 PASS DP=401;GPV=1;SPV=0.021145;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:226:197,29:104,9:93,20 +chr21 13016291 . A AG 0 PASS DP=112;GPV=1;SPV=0.0027062;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:50,9:27,7:23,2 +chr21 13109689 . T G 0 PASS DP=58;GPV=1;SPV=0.21541;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:18,1:18,3 +chr21 13178547 . A G 0 PASS DP=130;GPV=1;SPV=0.048782;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:57,10:39,9:18,1 +chr21 13370830 . G A 0 PASS DP=74;GPV=1;SPV=0.040848;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:18,2:17,3 +chr21 13507129 . T TATGC 0 PASS DP=76;GPV=1;SPV=0.062923;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:22,4:17,1 +chr21 13507133 . TG T 0 PASS DP=69;GPV=1;SPV=0.014256;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:20,4:12,3 +chr21 13507148 . C CATATCCATAT 0 PASS DP=73;GPV=1;SPV=0.019777;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:21,4:15,3 +chr21 15220771 . A T 0 PASS DP=78;GPV=1;SPV=0.040295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:11,1:26,4 +chr21 15220773 . A T 0 PASS DP=79;GPV=1;SPV=0.048187;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:13,1:26,4 +chr21 15939487 . A G 0 PASS DP=62;GPV=1;SPV=0.036677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:15,4:13,1 +chr21 16546313 . C CA 0 PASS DP=47;GPV=1;SPV=9.186e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:9,16:5,14:4,2 +chr21 16689769 . C CAAA 0 PASS DP=42;GPV=1;SPV=0.030207;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:6,4:2,1 +chr21 18365632 . T TTC 0 PASS DP=29;GPV=1;SPV=0.20468;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:4,1:10,3 +chr21 20508556 . TG T 0 PASS DP=73;GPV=1;SPV=0.054119;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:11,1:21,3 +chr21 21720242 . T C 0 PASS DP=49;GPV=1;SPV=0.058442;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,4:9,1:5,3 +chr21 23147147 . G C 0 PASS DP=86;GPV=1;SPV=0.0084455;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:38,7:20,5:18,2 +chr21 23785046 . A AG 0 PASS DP=20;GPV=1;SPV=0.092308;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:5,4:0,0 +chr21 24248367 . C CAAAAAAA 0 PASS DP=28;GPV=1;SPV=0.2488;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:6,2:6,2 +chr21 25177275 . A G 0 PASS DP=66;GPV=1;SPV=0.000113;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:9,4:14,9 +chr21 25831247 . A AAAAAAG 0 PASS DP=48;GPV=1;SPV=0.020644;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,9:6,7:7,2 +chr21 25917261 . C CA 0 PASS DP=50;GPV=1;SPV=0.047147;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,5:13,4:9,1 +chr21 26395875 . G A 0 PASS DP=33;GPV=1;SPV=0.1184;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:7,1:9,3 +chr21 29100700 . CTT C 0 PASS DP=35;GPV=1;SPV=0.030792;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:8,3:5,2 +chr21 30580160 . G A 0 PASS DP=85;GPV=1;SPV=0.0032828;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:19,7:21,3 +chr21 31064060 . T G 0 PASS DP=57;GPV=1;SPV=0.19298;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:9,8:6,7:3,1 +chr21 31564155 . ATTTTTT A 0 PASS DP=35;GPV=1;SPV=0.0087912;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:0,11:0,4:0,7 +chr21 31785300 . T TCACCACCACCAC 0 PASS DP=20;GPV=1;SPV=0.02381;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:0,5:0,4:0,1 +chr21 33242728 . C CAAA 0 PASS DP=19;GPV=1;SPV=0.010989;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:2,4:0,2:2,2 +chr21 33275152 . CT C 0 PASS DP=43;GPV=1;SPV=0.00052122;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:10,7:2,2 +chr21 33985104 . T C 0 PASS DP=50;GPV=1;SPV=0.017549;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:9,5:11,5 +chr21 34079602 . ATT A 0 PASS DP=37;GPV=1;SPV=0.0032051;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,11:4,4:6,7 +chr21 34563754 . CA C 0 PASS DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:5,2:5,2 +chr21 34563796 . G T 0 PASS DP=29;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:2,1:6,5 +chr21 34859485 . C T 0 PASS DP=69;GPV=1;SPV=1.0094e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,17:13,10:5,7 +chr21 35985942 . T A 0 PASS DP=51;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:25:0,5:0,2:0,3 +chr21 36115398 . AT A 0 PASS DP=28;GPV=1;SPV=0.034325;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,6:5,5:1,1 +chr21 36458485 . A T 0 PASS DP=92;GPV=1;SPV=7.9266e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:19,7:14,5 +chr21 36489333 . G A 0 PASS DP=74;GPV=1;SPV=0.0031363;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:38,16:22,9:16,7 +chr21 41655990 . AAC A 0 PASS DP=43;GPV=1;SPV=0.040214;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:7,2:6,5 +chr21 41781015 . A AAGGAAGGGAGGG 0 PASS DP=31;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:13,4:0,0 +chr21 42795970 . C CAA 0 PASS DP=44;GPV=1;SPV=0.025287;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,6:2,5:6,1 +chr21 42840043 . C T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:15,1:13,3 +chr21 42840044 . A G 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:8,1:12,3 +chr21 42952795 . T C 0 PASS DP=46;GPV=1;SPV=0.0042194;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:8,9:7,2 +chr21 44828163 . C CAAA 0 PASS DP=49;GPV=1;SPV=0.049781;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,10:14,9:6,1 +chr21 44973001 . G A 0 PASS DP=107;GPV=1;SPV=0.032506;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:46,9:20,6:26,3 +chr21 46005922 . G A 0 PASS DP=65;GPV=1;SPV=0.079663;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,4:21,1 +chr21 46209576 . T C 0 PASS DP=89;GPV=1;SPV=1.7127e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:14,9:13,12 +chr21 46502437 . AT A 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:9,3:3,2 +chr22 10515468 . T C 0 PASS DP=39;GPV=1;SPV=0.0026385;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,8:6,4:3,4 +chr22 10527435 . G A 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4 +chr22 10532777 . C A 0 PASS DP=200;GPV=1;SPV=0.028811;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:93,21:45,5:48,16 +chr22 10558134 . C T 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:0,0:35,4 +chr22 10595912 . G T 0 PASS DP=37;GPV=1;SPV=0.015249;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:12,8:4,3 +chr22 10619665 . G A 0 PASS DP=103;GPV=1;SPV=0.027107;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:29,7:13,4 +chr22 10687725 . G T 0 PASS DP=294;GPV=1;SPV=0.028858;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:148:131,17:64,7:67,10 +chr22 10688005 . G A 0 PASS DP=191;GPV=1;SPV=0.01099;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:87,16:35,9:52,7 +chr22 10689266 . TTA T 0 PASS DP=110;GPV=1;SPV=0.013255;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:47,11:18,4:29,7 +chr22 10710438 . T G 0 PASS DP=477;GPV=1;SPV=7.9607e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:271:237,34:116,16:121,18 +chr22 10713037 . A C 0 PASS DP=488;GPV=1;SPV=0.049445;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:237:211,26:118,15:93,11 +chr22 10713116 . T C 0 PASS DP=486;GPV=1;SPV=0.031031;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:250:221,29:125,11:96,18 +chr22 10715443 . G C 0 PASS DP=398;GPV=1;SPV=0.035464;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:193,24:78,10:115,14 +chr22 10735435 . G A 0 PASS DP=591;GPV=1;SPV=0.025866;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:251,28:104,14:147,14 +chr22 10740709 . T C 0 PASS DP=745;GPV=1;SPV=0.027163;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:400:345,55:187,30:158,25 +chr22 10774323 . C G 0 PASS DP=239;GPV=1;SPV=0.047186;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:130:112,18:43,7:69,11 +chr22 10783174 . C G 0 PASS DP=537;GPV=1;SPV=0.0073097;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:300:268,32:153,20:115,12 +chr22 11025039 . C T 0 PASS DP=536;GPV=1;SPV=0.046535;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:244,35:161,25:83,10 +chr22 11025413 . A C 0 PASS DP=356;GPV=1;SPV=0.00050264;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:200:161,39:73,12:88,27 +chr22 11032829 . C G 0 PASS DP=340;GPV=1;SPV=0.024978;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:187:160,27:85,12:75,15 +chr22 11037145 . G T 0 PASS DP=580;GPV=1;SPV=0.030083;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:302:268,34:108,13:160,21 +chr22 11051002 . A AT 0 PASS DP=339;GPV=1;SPV=0.0056207;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:174:123,25:79,15:44,10 +chr22 11051392 . C CTT 0 PASS DP=241;GPV=1;SPV=0.0010608;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:141:83,33:48,14:35,19 +chr22 11052377 . G A 0 PASS DP=284;GPV=1;SPV=0.021315;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:132,24:60,14:72,10 +chr22 11053495 . G A 0 PASS DP=524;GPV=1;SPV=0.03049;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:269:240,29:147,13:93,16 +chr22 11067683 . G T 0 PASS DP=502;GPV=1;SPV=0.016094;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:280:239,41:117,19:122,22 +chr22 11704828 . G T 0 PASS DP=53;GPV=1;SPV=0.039473;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:15,4:11,2 +chr22 11706815 . C A 0 PASS DP=201;GPV=1;SPV=0.029311;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:85,19:43,12:42,7 +chr22 11716434 . G A 0 PASS DP=140;GPV=1;SPV=0.033757;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:56,11:26,4:30,7 +chr22 11789821 . C A 0 PASS DP=75;GPV=1;SPV=0.035057;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:11,5:27,1 +chr22 11792484 . C A 0 PASS DP=174;GPV=1;SPV=0.003997;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:70,23:29,9:41,14 +chr22 11800116 . T C 0 PASS DP=45;GPV=1;SPV=0.071318;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:7,1:13,3 +chr22 11808139 . A G 0 PASS DP=223;GPV=1;SPV=0.021598;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:122:107,15:37,6:70,9 +chr22 11824968 . C A 0 PASS DP=67;GPV=1;SPV=0.039036;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:17,4:14,1 +chr22 11849927 . T A 0 PASS DP=280;GPV=1;SPV=0.015956;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:108,24:39,8:69,16 +chr22 11851137 . C T 0 PASS DP=173;GPV=1;SPV=0.0478;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:72,12:9,6:63,6 +chr22 11862800 . G T 0 PASS DP=312;GPV=1;SPV=0.0023027;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:164:138,26:75,6:63,20 +chr22 11862849 . C T 0 PASS DP=195;GPV=1;SPV=0.0099818;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:91,17:37,5:54,12 +chr22 11863886 . T C 0 PASS DP=232;GPV=1;SPV=0.021636;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:111:87,17:24,3:63,14 +chr22 11872739 . G A 0 PASS DP=598;GPV=1;SPV=0.037931;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:321:276,45:67,26:209,19 +chr22 11880183 . C A 0 PASS DP=758;GPV=1;SPV=0.029906;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:424:380,44:182,25:198,19 +chr22 11884747 . T C 0 PASS DP=172;GPV=1;SPV=0.022025;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:78:61,17:33,10:28,7 +chr22 11891373 . G A 0 PASS DP=276;GPV=1;SPV=0.0083297;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:140,25:61,6:79,19 +chr22 11910029 . T C 0 PASS DP=534;GPV=1;SPV=0.0017436;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:298:253,45:117,18:136,27 +chr22 11910052 . ATT A 0 PASS DP=588;GPV=1;SPV=0.0077303;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:317:276,41:121,16:155,25 +chr22 11910108 . C T 0 PASS DP=508;GPV=1;SPV=0.044125;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:279:249,30:105,14:144,16 +chr22 11919665 . G A 0 PASS DP=689;GPV=1;SPV=0.044565;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:365:319,46:163,26:156,20 +chr22 11949405 . A T 0 PASS DP=128;GPV=1;SPV=0.023767;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:64:53,9:33,8:20,1 +chr22 11965872 . A AT 0 PASS DP=74;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:14,5:13,6 +chr22 12041709 . T C 0 PASS DP=376;GPV=1;SPV=0.027322;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:194:166,28:85,12:81,16 +chr22 12059080 . T C 0 PASS DP=112;GPV=1;SPV=0.031253;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:51,10:10,1:41,9 +chr22 12117801 . CTTT C 0 PASS DP=121;GPV=1;SPV=0.030243;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:55,9:23,4:32,5 +chr22 12141119 . T C 0 PASS DP=225;GPV=1;SPV=0.0016122;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:126:112,14:41,6:71,8 +chr22 12141913 . T A 0 PASS DP=175;GPV=1;SPV=0.035797;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:101:90,11:37,8:53,3 +chr22 12150278 . A T 0 PASS DP=224;GPV=1;SPV=0.03149;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:107,14:36,6:71,8 +chr22 12204530 . A G 0 PASS DP=377;GPV=1;SPV=0.030182;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:198:168,30:78,11:90,19 +chr22 12217824 . G A 0 PASS DP=172;GPV=1;SPV=0.011982;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:72,21:47,16:25,5 +chr22 12297999 . G C 0 PASS DP=200;GPV=1;SPV=0.041699;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:85,20:27,7:58,13 +chr22 12379640 . A T 0 PASS DP=184;GPV=1;SPV=0.0093892;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:95:75,20:44,5:31,15 +chr22 12395058 . C T 0 PASS DP=243;GPV=1;SPV=0.020863;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:132:107,25:59,17:48,8 +chr22 12494373 . C T 0 PASS DP=70;GPV=1;SPV=0.012821;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:28,9:2,1 +chr22 12621814 . C T 0 PASS DP=320;GPV=1;SPV=0.031921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:170:150,20:75,13:75,7 +chr22 12621815 . A G 0 PASS DP=327;GPV=1;SPV=0.0045834;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:177:153,24:75,16:78,8 +chr22 12628383 . T G 0 PASS DP=303;GPV=1;SPV=0.0056617;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:147,18:91,15:56,3 +chr22 12720595 . C T 0 PASS DP=168;GPV=1;SPV=0.04159;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:71,11:41,9:30,2 +chr22 12791545 . T G 0 PASS DP=93;GPV=1;SPV=0.008703;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:45,8:24,7:21,1 +chr22 12807142 . G A 0 PASS DP=234;GPV=1;SPV=0.0090814;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:116:100,16:48,9:52,7 +chr22 12873772 . C T 0 PASS DP=728;GPV=1;SPV=0.017611;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:393:350,43:189,14:161,29 +chr22 15251751 . C T 0 PASS DP=31;GPV=1;SPV=0.010876;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,4:5,2 +chr22 15544861 . CT C 0 PASS DP=93;GPV=1;SPV=0.014087;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:26,1:15,5 +chr22 15557613 . A T 0 PASS DP=179;GPV=1;SPV=0.032489;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:75,15:41,8:34,7 +chr22 15564283 . C G 0 PASS DP=56;GPV=1;SPV=0.0074047;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:13,2:11,6 +chr22 15565713 . G A 0 PASS DP=236;GPV=1;SPV=0.016353;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:118:100,18:58,8:42,10 +chr22 15569125 . G A 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 15578215 . G A 0 PASS DP=135;GPV=1;SPV=0.022403;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:57,16:27,6:30,10 +chr22 15679673 . C G 0 PASS DP=97;GPV=1;SPV=0.031468;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:21,7:19,7 +chr22 15737058 . G A 0 PASS DP=61;GPV=1;SPV=0.036388;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:16,4:10,8 +chr22 15737153 . C T 0 PASS DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:16,1:10,3 +chr22 15755684 . C A 0 PASS DP=126;GPV=1;SPV=0.0010651;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:59,11:30,4:29,7 +chr22 15803926 . CA C 0 PASS DP=93;GPV=1;SPV=0.030404;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:22,2:14,6 +chr22 15803932 . A C 0 PASS DP=83;GPV=1;SPV=0.033733;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:22,2:10,6 +chr22 15817353 . C A 0 PASS DP=128;GPV=1;SPV=0.033127;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:60,16:33,9:27,7 +chr22 16451898 . T C 0 PASS DP=157;GPV=1;SPV=0.023234;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:72,10:32,2:40,8 +chr22 16677660 . CT C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:4,3:1,1 +chr22 17680215 . C CAAAAAAAAA 0 PASS DP=43;GPV=1;SPV=0.01398;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:10,8:5,1 +chr22 18491271 . G A 0 PASS DP=55;GPV=1;SPV=0.025398;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:10,2:15,4 +chr22 18526584 . T G 0 PASS DP=57;GPV=1;SPV=0.045802;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:8,3:14,3 +chr22 18631998 . C G 0 PASS DP=54;GPV=1;SPV=0.040114;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:9,5:11,1 +chr22 18748951 . T C 0 PASS DP=131;GPV=1;SPV=0.0042912;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:70:51,19:22,8:29,11 +chr22 19589749 . ATGTGTGTG A 0 PASS DP=37;GPV=1;SPV=0.083578;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:7,1:8,3 +chr22 19647482 . T A 0 PASS DP=64;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:5,2:2,1:3,1 +chr22 21167912 . G A 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr22 21171889 . C T 0 PASS DP=68;GPV=1;SPV=0.049568;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:12,3:9,4 +chr22 21283575 . G A 0 PASS DP=125;GPV=1;SPV=0.0052909;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:54,13:48,9:6,4 +chr22 21327287 . ATATTTAATG A 0 PASS DP=36;GPV=1;SPV=0.041126;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:10,1:5,4 +chr22 21789901 . TA T 0 PASS DP=93;GPV=1;SPV=0.035754;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:24,3:13,5 +chr22 22336932 . T C 0 PASS DP=76;GPV=1;SPV=0.035811;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:15,5:16,4 +chr22 22634572 . G A 0 PASS DP=90;GPV=1;SPV=0.011338;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:7,2:31,4 +chr22 22636857 . A C 0 PASS DP=76;GPV=1;SPV=0.074196;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:20,2:21,3 +chr22 22638606 . T C 0 PASS DP=80;GPV=1;SPV=0.023491;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:14,1:24,5 +chr22 23156145 . G GAA 0 PASS DP=46;GPV=1;SPV=0.026014;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:7,2:8,2 +chr22 23718138 . CAA C 0 PASS DP=37;GPV=1;SPV=0.046407;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,6:5,4:2,2 +chr22 23917756 . C CAAAAA 0 PASS DP=45;GPV=1;SPV=0.015459;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:13,6:1,2 +chr22 23951068 . TC T 0 PASS DP=34;GPV=1;SPV=0.19094;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:5,1:14,3 +chr22 24261891 . G A 0 PASS DP=131;GPV=1;SPV=0.028928;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:57,9:29,8:28,1 +chr22 24643645 . C A 0 PASS DP=75;GPV=1;SPV=0.04342;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:36,5:16,1:20,4 +chr22 25497868 . CAAA C 0 PASS DP=49;GPV=1;SPV=0.0012088;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,16:11,14:2,2 +chr22 26416397 . G A 0 PASS DP=89;GPV=1;SPV=2.1596e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,19:15,12:7,7 +chr22 27036071 . CT C 0 PASS DP=30;GPV=1;SPV=0.032284;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:8,5:4,2 +chr22 27041284 . C T 0 PASS DP=81;GPV=1;SPV=8.6693e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:13,9:8,10 +chr22 27130166 . C CT 0 PASS DP=25;GPV=1;SPV=0.045217;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:7,5:3,1 +chr22 30454606 . ATAT A 0 PASS DP=42;GPV=1;SPV=0.1396;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:5,2:19,3 +chr22 31129542 . C CT 0 PASS DP=35;GPV=1;SPV=0.032901;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:4,3:5,3 +chr22 31377200 . C CT 0 PASS DP=34;GPV=1;SPV=0.028009;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,8:5,6:5,2 +chr22 31795065 . AT A 0 PASS DP=45;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:15,8:3,2 +chr22 32559832 . C CA 0 PASS DP=78;GPV=1;SPV=0.016203;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,6:17,4:16,2 +chr22 33139537 . C A 0 PASS DP=84;GPV=1;SPV=1.1736e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:32,20:16,9:16,11 +chr22 33220224 . C T 0 PASS DP=85;GPV=1;SPV=4.4311e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:10,11:20,8 +chr22 33574686 . TTGTGTGTGTGTG T 0 PASS DP=34;GPV=1;SPV=0.038248;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:8,10:4,4:4,6 +chr22 33805508 . C T 0 PASS DP=90;GPV=1;SPV=1.6689e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:25,14:13,9:12,5 +chr22 33805761 . G A 0 PASS DP=66;GPV=1;SPV=0.0080302;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:12,8:3,5:9,3 +chr22 34168569 . C A 0 PASS DP=94;GPV=1;SPV=0.00018622;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:40,14:19,6:21,8 +chr22 34437204 . GA G 0 PASS DP=74;GPV=1;SPV=3.0526e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:11,8:10,7 +chr22 34664854 . A AT 0 PASS DP=67;GPV=1;SPV=0.00025582;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:15,10:8,8:7,2 +chr22 35875607 . GGTGT G 0 PASS DP=33;GPV=1;SPV=0.082213;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,5:5,3:6,2 +chr22 36210011 . C T 0 PASS DP=80;GPV=1;SPV=6.4115e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,7:10,7 +chr22 36251070 . C CA 0 PASS DP=58;GPV=1;SPV=0.019126;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,8:17,7:4,1 +chr22 36354956 . A AACACACACACACACACACAC 0 PASS DP=53;GPV=1;SPV=0.11312;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:30,5:14,4:16,1 +chr22 37711592 . AC A 0 PASS DP=50;GPV=1;SPV=0.010299;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,8:7,6:12,2 +chr22 37728262 . A C 0 PASS DP=49;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,2:2,1:3,1 +chr22 38478534 . C CA 0 PASS DP=42;GPV=1;SPV=0.0093932;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,10:4,4:7,6 +chr22 39620766 . T G 0 PASS DP=75;GPV=1;SPV=0.16591;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:24,4:13,2:11,2 +chr22 40145067 . C CAA 0 PASS DP=51;GPV=1;SPV=0.041183;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,8:9,7:11,1 +chr22 41033338 . T C 0 PASS DP=69;GPV=1;SPV=0.013602;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:16,5:12,8 +chr22 41066798 . A G 0 PASS DP=81;GPV=1;SPV=2.8289e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:14,12:7,10 +chr22 41357774 . G A 0 PASS DP=111;GPV=1;SPV=6.1491e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:16,8:21,6 +chr22 41457120 . CA C 0 PASS DP=28;GPV=1;SPV=0.012882;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:6,6:3,1 +chr22 41864324 . T TA 0 PASS DP=35;GPV=1;SPV=0.011216;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,5:3,3:3,2 +chr22 41864326 . T A 0 PASS DP=40;GPV=1;SPV=0.01192;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,8:5,6:4,2 +chr22 42666228 . C CAA 0 PASS DP=48;GPV=1;SPV=0.0095299;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,13:11,11:5,2 +chr22 43165890 . C CTT 0 PASS DP=30;GPV=1;SPV=0.12884;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:12,3:2,1 +chr22 44629323 . A G 0 PASS DP=66;GPV=1;SPV=0.048243;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,7:11,5:9,2 +chr22 45063002 . AATTTT A 0 PASS DP=82;GPV=1;SPV=0.023653;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:7,8:19,2 +chr22 47667517 . GTTTTT G 0 PASS DP=18;GPV=1;SPV=0.038462;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,2:2,2 +chr22 48726557 . G A 0 PASS DP=80;GPV=1;SPV=0.031171;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:13,5:27,1 +chr22 48726583 . C T 0 PASS DP=66;GPV=1;SPV=0.048775;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:12,2:20,3 +chr22 48726597 . T C 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:11,3:17,1 +chr22 48956408 . A AC 0 PASS DP=49;GPV=1;SPV=0.0030462;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,9:4,3:7,6 +chr22 49066953 . T G 0 PASS DP=51;GPV=1;SPV=0.11845;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:13,2:16,3 +chr22 49433501 . C T 0 PASS DP=29;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:8,3:5,1 +chr22 49693705 . T G 0 PASS DP=86;GPV=1;SPV=0.00011692;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:33,13:16,3:17,10 +chr3 4566604 . G GCACACACA 0 PASS DP=35;GPV=1;SPV=0.019985;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,10:6,8:3,2 +chr3 5111167 . C CA 0 PASS DP=31;GPV=1;SPV=0.097251;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:1,0:13,4 +chr3 6429035 . C G 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,2:9,2 +chr3 6799365 . G GA 0 PASS DP=51;GPV=1;SPV=0.0020146;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,8:13,5:4,3 +chr3 8612658 . C A 0 PASS DP=44;GPV=1;SPV=0.026298;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:5,5:9,1 +chr3 8742375 . G A 0 PASS DP=38;GPV=1;SPV=0.030897;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:4,3:8,1 +chr3 9511350 . CA C 0 PASS DP=60;GPV=1;SPV=0.0034707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:14,5:7,2 +chr3 11841073 . ATTT A 0 PASS DP=33;GPV=1;SPV=0.025708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:9,3:2,2 +chr3 18305569 . C CTCTCTCT 0 PASS DP=52;GPV=1;SPV=0.071429;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:2,4:2,1:0,3 +chr3 18324800 . A T 0 PASS DP=44;GPV=1;SPV=0.04073;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:22,7:6,2:16,5 +chr3 18553747 . T C 0 PASS DP=85;GPV=1;SPV=1.0994e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:14,9:12,4 +chr3 20755436 . T TTG 0 PASS DP=47;GPV=1;SPV=0.024017;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:8,8:3,5:5,3 +chr3 20856087 . CCAGAGT C 0 PASS DP=40;GPV=1;SPV=0.023613;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:9,5:3,1 +chr3 20856104 . C CCAGAGT 0 PASS DP=35;GPV=1;SPV=0.012694;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,7:6,5:1,2 +chr3 20988867 . CTT C 0 PASS DP=52;GPV=1;SPV=0.017612;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,8:8,4:6,4 +chr3 21682728 . CT C 0 PASS DP=77;GPV=1;SPV=9.7753e-05;SS=2;SSC=40;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:15,7:15,8 +chr3 21689130 . C CA 0 PASS DP=52;GPV=1;SPV=0.013927;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:9,8:8,2 +chr3 22530753 . G GTT 0 PASS DP=27;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr3 22546163 . C T 0 PASS DP=39;GPV=1;SPV=0.017286;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:9,4:5,7 +chr3 23113226 . C CAT 0 PASS DP=26;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,5:0,4:3,1 +chr3 23290889 . T TAA 0 PASS DP=39;GPV=1;SPV=0.0079695;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:10,7:5,1 +chr3 23752505 . CT C 0 PASS DP=32;GPV=1;SPV=0.020047;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:5,4:5,5 +chr3 24787864 . TATACAC T 0 PASS DP=57;GPV=1;SPV=0.041843;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:13,6:10,5 +chr3 24913402 . C T 0 PASS DP=40;GPV=1;SPV=0.0098833;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:23:3,9:3,4:0,5 +chr3 25133963 . T TAA 0 PASS DP=52;GPV=1;SPV=0.014127;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,9:8,5:12,4 +chr3 27587474 . A AT 0 PASS DP=58;GPV=1;SPV=3.7952e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:5,9:12,4 +chr3 28015880 . C T 0 PASS DP=25;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:6,1:5,3 +chr3 29435973 . C CAA 0 PASS DP=82;GPV=1;SPV=0.00034388;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,18:12,15:18,3 +chr3 30186088 . T TTAA 0 PASS DP=72;GPV=1;SPV=0.088833;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:17,1:19,3 +chr3 33434289 . CT C 0 PASS DP=21;GPV=1;SPV=0.035088;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:4,1:2,3 +chr3 34654288 . C T 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:0,0:18,4 +chr3 36918610 . A G 0 PASS DP=42;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:10,4:7,1 +chr3 38033298 . A ATTT 0 PASS DP=37;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,7:2,4:10,3 +chr3 38259441 . CAT C 0 PASS DP=23;GPV=1;SPV=0.20798;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:5,4:3,1 +chr3 38759067 . C T 0 PASS DP=75;GPV=1;SPV=0.0035502;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:16,5:17,4 +chr3 39512143 . G C 0 PASS DP=92;GPV=1;SPV=0.0027042;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:27,4:16,6 +chr3 42271566 . C T 0 PASS DP=76;GPV=1;SPV=3.6217e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:17,18:11,10:6,8 +chr3 42427757 . G A 0 PASS DP=65;GPV=1;SPV=0.0059941;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,9:8,7:6,2 +chr3 44191534 . G A 0 PASS DP=50;GPV=1;SPV=0.088889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:12,4:8,2:4,2 +chr3 45205918 . CATATATATATATATATATATATATATATATATATATATATAT C 0 PASS DP=26;GPV=1;SPV=0.02087;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,6:3,3:3,3 +chr3 46699060 . A ATT 0 PASS DP=27;GPV=1;SPV=0.0037707;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,7:2,5:1,2 +chr3 47316564 . T C 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:5,1:8,3 +chr3 47539503 . A G 0 PASS DP=62;GPV=1;SPV=0.10559;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:19,2:13,2 +chr3 47650304 . T A 0 PASS DP=57;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:13,2:13,2 +chr3 47708086 . T TTTTTC 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr3 47769210 . C CCA 0 PASS DP=28;GPV=1;SPV=0.024224;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:2,4:6,1 +chr3 48100231 . A ATTTTTTTTTTTT 0 PASS DP=16;GPV=1;SPV=0.0012432;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:1,7:0,4:1,3 +chr3 48825028 . CTT C 0 PASS DP=29;GPV=1;SPV=0.022489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:4,5:4,2 +chr3 49145119 . C CT 0 PASS DP=30;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:3,4:10,1 +chr3 49564269 . C T 0 PASS DP=78;GPV=1;SPV=2.295e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:17,11:9,10 +chr3 50729353 . TTA T 0 PASS DP=75;GPV=1;SPV=0.053325;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:24,3:17,3 +chr3 51515929 . C CT 0 PASS DP=31;GPV=1;SPV=0.0737;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,5:5,1 +chr3 51527671 . T C 0 PASS DP=49;GPV=1;SPV=0.013574;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:12,6:6,3 +chr3 51777374 . A AACACAC 0 PASS DP=54;GPV=1;SPV=0.032319;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:23,10:13,6:10,4 +chr3 52793297 . A AT 0 PASS DP=71;GPV=1;SPV=0.013344;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,8:15,4:10,4 +chr3 53316596 . CT C 0 PASS DP=41;GPV=1;SPV=0.04469;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:6,10:3,5:3,5 +chr3 53555439 . T TGG 0 PASS DP=42;GPV=1;SPV=0.13842;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,4:14,2:7,2 +chr3 55589215 . C CA 0 PASS DP=38;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:12,3:7,1 +chr3 57649530 . T TA 0 PASS DP=56;GPV=1;SPV=0.0026369;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,13:9,6:8,7 +chr3 59646497 . CAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.029412;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,5:2,4:3,1 +chr3 64193563 . C T 0 PASS DP=85;GPV=1;SPV=2.0579e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,6:13,6 +chr3 66941692 . TCTAG T 0 PASS DP=66;GPV=1;SPV=0.017873;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,6:10,4:4,2 +chr3 67679793 . T TA 0 PASS DP=37;GPV=1;SPV=0.027415;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,7:3,6:3,1 +chr3 68148279 . G A 0 PASS DP=93;GPV=1;SPV=1.8779e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:13,12:12,9 +chr3 69656637 . TGTGCAACA T 0 PASS DP=72;GPV=1;SPV=3.2589e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:12,4:11,9 +chr3 73162166 . C CT 0 PASS DP=48;GPV=1;SPV=0.0034955;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,14:7,9:9,5 +chr3 74233543 . G A 0 PASS DP=74;GPV=1;SPV=5.8154e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:6,7:11,7 +chr3 75443072 . CATATATAT C 0 PASS DP=37;GPV=1;SPV=0.056191;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:10,7:5,3:5,4 +chr3 75466093 . TTCTCTC T 0 PASS DP=45;GPV=1;SPV=0.049667;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:13,7:9,6:4,1 +chr3 75544518 . T TA 0 PASS DP=49;GPV=1;SPV=0.030143;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:11,3:4,5 +chr3 75630855 . T C 0 PASS DP=432;GPV=1;SPV=0.0086559;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:193,34:89,14:104,20 +chr3 75636215 . TTTACA T 0 PASS DP=124;GPV=1;SPV=0.00073785;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:34,18:23,7:11,11 +chr3 75799240 . G A 0 PASS DP=128;GPV=1;SPV=0.043876;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:65,8:37,6:28,2 +chr3 76160831 . A G 0 PASS DP=81;GPV=1;SPV=0.00040665;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:15,4:18,8 +chr3 76603332 . CAAAAAA C 0 PASS DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:6,3:6,1 +chr3 76941714 . G A 0 PASS DP=75;GPV=1;SPV=3.6992e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:24,18:14,10:10,8 +chr3 77437661 . G A 0 PASS DP=86;GPV=1;SPV=4.4652e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:15,11:11,8 +chr3 78712038 . A C 0 PASS DP=26;GPV=1;SPV=0.094071;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,2:5,3 +chr3 82029772 . A C 0 PASS DP=98;GPV=1;SPV=8.5764e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:15,6:21,6 +chr3 82731343 . T TCA 0 PASS DP=65;GPV=1;SPV=0.045958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,9:13,3:8,6 +chr3 83829507 . C T 0 PASS DP=81;GPV=1;SPV=0.0018636;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:23,7:14,4 +chr3 84560279 . T TA 0 PASS DP=88;GPV=1;SPV=0.0019283;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:13,2:24,7 +chr3 84817008 . T A 0 PASS DP=64;GPV=1;SPV=6.8751e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,7:12,5 +chr3 85175919 . CT C 0 PASS DP=35;GPV=1;SPV=0.019062;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr3 85327554 . C CCACACACA 0 PASS DP=35;GPV=1;SPV=0.12093;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:12,3:6,2 +chr3 85769360 . GTA G 0 PASS DP=58;GPV=1;SPV=0.036961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:23,10:15,7:8,3 +chr3 85776336 . T TACACAC 0 PASS DP=58;GPV=1;SPV=0.048633;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,8:8,1 +chr3 86455500 . C T 0 PASS DP=95;GPV=1;SPV=4.5883e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:23,6:13,8 +chr3 86819647 . T C 0 PASS DP=46;GPV=1;SPV=0.25076;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,1:18,3 +chr3 86843970 . T TAAA 0 PASS DP=23;GPV=1;SPV=0.076023;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:4,3:5,2 +chr3 86934470 . CTA C 0 PASS DP=62;GPV=1;SPV=0.13232;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:19,1:15,3 +chr3 87168932 . T C 0 PASS DP=55;GPV=1;SPV=0.080354;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,3:11,1 +chr3 88600837 . C G 0 PASS DP=72;GPV=1;SPV=1.6063e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,15:7,7:12,8 +chr3 89415467 . A AATATATATATATATAT 0 PASS DP=47;GPV=1;SPV=0.084902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:15,1:6,3 +chr3 89570143 . C CA 0 PASS DP=45;GPV=1;SPV=0.032087;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,12:17,7:4,5 +chr3 90078631 . A G 0 PASS DP=83;GPV=1;SPV=9.0699e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:19,5:13,9 +chr3 90709652 . T A 0 PASS DP=37;GPV=1;SPV=7.1674e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:20:3,17:1,6:2,11 +chr3 90793933 . G A 0 PASS DP=51;GPV=1;SPV=0.041838;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,5:10,2:13,3 +chr3 90798273 . A G 0 PASS DP=65;GPV=1;SPV=0.019069;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:1,1:22,8 +chr3 90819203 . G T 0 PASS DP=63;GPV=1;SPV=0.13808;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:34,4:1,0 +chr3 90820754 . G A 0 PASS DP=92;GPV=1;SPV=0.0075937;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:26,4:11,5 +chr3 90940738 . C T 0 PASS DP=108;GPV=1;SPV=0.03083;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:42,10:18,4:24,6 +chr3 90946971 . A C 0 PASS DP=23;GPV=1;SPV=0.016624;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:1,1:4,7 +chr3 90960127 . T C 0 PASS DP=427;GPV=1;SPV=0.017457;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:227:202,25:43,5:159,20 +chr3 90960336 . A T 0 PASS DP=86;GPV=1;SPV=0.049167;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:25,3:18,2 +chr3 90964893 . T G 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:21,4:1,0 +chr3 90972114 . T A 0 PASS DP=294;GPV=1;SPV=0.046319;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:118,20:8,1:110,19 +chr3 91033421 . C G 0 PASS DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:17,3:3,1 +chr3 91114091 . C G 0 PASS DP=22;GPV=1;SPV=0.01548;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:0,1:4,5 +chr3 91136381 . G A 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:5,1:1,1 +chr3 91155170 . A C 0 PASS DP=38;GPV=1;SPV=0.081081;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:9,1:8,3 +chr3 91168881 . T A 0 PASS DP=270;GPV=1;SPV=0.039095;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:127,20:46,5:81,15 +chr3 91185986 . G T 0 PASS DP=76;GPV=1;SPV=0.071233;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:14,1:22,3 +chr3 91257575 . A T 0 PASS DP=91;GPV=1;SPV=0.023;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:11,6:22,6 +chr3 91734902 . T G 0 PASS DP=179;GPV=1;SPV=0.020773;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:74,14:52,10:22,4 +chr3 92895933 . C T 0 PASS DP=70;GPV=1;SPV=0.11326;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:17,4:24,1 +chr3 93231826 . C A 0 PASS DP=35;GPV=1;SPV=0.0097821;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,7:2,5:7,2 +chr3 93628962 . A C 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:6,3:0,0 +chr3 95045306 . G A 0 PASS DP=77;GPV=1;SPV=2.2804e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:8,10:10,10 +chr3 95799926 . C T 0 PASS DP=98;GPV=1;SPV=2.1763e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:13,13:17,6 +chr3 97179717 . G GTCTCTCTC 0 PASS DP=58;GPV=1;SPV=0.047969;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:11,5:12,4 +chr3 97516006 . C T 0 PASS DP=60;GPV=1;SPV=0.00016135;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:14,8:6,4 +chr3 97669261 . G GT 0 PASS DP=71;GPV=1;SPV=0.0012641;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:13,5:14,4 +chr3 98689394 . T TATACATGGAAACATATA 0 PASS DP=26;GPV=1;SPV=0.1592;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,2:3,2 +chr3 98761022 . T C 0 PASS DP=84;GPV=1;SPV=0.00030829;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:35,13:22,5:13,8 +chr3 102475930 . C T 0 PASS DP=80;GPV=1;SPV=2.6232e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:18,10:13,9 +chr3 103575380 . A G 0 PASS DP=85;GPV=1;SPV=5.1599e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:7,8:12,8 +chr3 104230578 . CAAAAAAAAAAA C 0 PASS DP=35;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,6:2,5:8,1 +chr3 104405069 . CA C 0 PASS DP=29;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:3,3:8,1 +chr3 105280352 . C T 0 PASS DP=59;GPV=1;SPV=0.1019;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:13,2:17,2 +chr3 106155491 . GCA G 0 PASS DP=58;GPV=1;SPV=0.015187;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,11:8,2 +chr3 107251876 . G A 0 PASS DP=81;GPV=1;SPV=0.00055017;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:34,12:16,6:18,6 +chr3 107829977 . CTT C 0 PASS DP=26;GPV=1;SPV=0.034783;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:5,5:5,1 +chr3 108704397 . C A 0 PASS DP=45;GPV=1;SPV=0.13561;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:13,4:7,2:6,2 +chr3 108780415 . G A 0 PASS DP=85;GPV=1;SPV=2.7129e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:29,19:14,7:15,12 +chr3 109355488 . CA C 0 PASS DP=43;GPV=1;SPV=0.040809;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:12,7:2,1 +chr3 109421528 . T TC 0 PASS DP=41;GPV=1;SPV=0.0090069;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:9,8:4,1 +chr3 111869715 . G T 0 PASS DP=77;GPV=1;SPV=0.048716;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:12,2:16,3 +chr3 112483140 . CT C 0 PASS DP=27;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,6:5,1 +chr3 113087776 . A AGT 0 PASS DP=51;GPV=1;SPV=0.0064207;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:15,11:12,6:3,5 +chr3 113113781 . C CTT 0 PASS DP=29;GPV=1;SPV=0.017544;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,11:1,8:6,3 +chr3 113683464 . C CTT 0 PASS DP=27;GPV=1;SPV=0.10791;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:5,2:6,2 +chr3 115111003 . TAA T 0 PASS DP=81;GPV=1;SPV=0.013855;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:35,6:17,4:18,2 +chr3 118309745 . A G 0 PASS DP=65;GPV=1;SPV=6.2466e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:6,5:10,12 +chr3 119504434 . C G 0 PASS DP=78;GPV=1;SPV=7.4019e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:25,25:13,15:12,10 +chr3 119662233 . A G 0 PASS DP=39;GPV=1;SPV=0.0033075;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:12,6:1,2 +chr3 120377256 . G A 0 PASS DP=46;GPV=1;SPV=0.0018544;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:10,1:6,8 +chr3 121486895 . G C 0 PASS DP=63;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,3:2,2:3,1 +chr3 123152111 . T G 0 PASS DP=35;GPV=1;SPV=0.024337;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:3,8:9,1 +chr3 124437274 . T A 0 PASS DP=79;GPV=1;SPV=0.030818;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:16,6:17,1 +chr3 126807268 . A T 0 PASS DP=56;GPV=1;SPV=1.0613e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,13:10,8:4,5 +chr3 133107455 . G GGT 0 PASS DP=65;GPV=1;SPV=0.0033467;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:14,8:9,4:5,4 +chr3 135035840 . A C 0 PASS DP=90;GPV=1;SPV=2.8928e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:13,10:14,9 +chr3 135277886 . G T 0 PASS DP=61;GPV=1;SPV=0.2;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:1,2:0,1:1,1 +chr3 135588978 . T C 0 PASS DP=49;GPV=1;SPV=0.024419;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:11,7:6,3 +chr3 137401062 . C T 0 PASS DP=95;GPV=1;SPV=9.5596e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:35,12:18,7:17,5 +chr3 138005386 . G T 0 PASS DP=40;GPV=1;SPV=0.033449;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:2,2:14,10 +chr3 138100978 . C T 0 PASS DP=90;GPV=1;SPV=1.6652e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:16,9:12,13 +chr3 141458365 . T TTATATA 0 PASS DP=42;GPV=1;SPV=0.005394;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:9,8:4,2 +chr3 142496280 . A T 0 PASS DP=19;GPV=1;SPV=0.012987;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:0,5:0,4:0,1 +chr3 142528879 . A T 0 PASS DP=19;GPV=1;SPV=0.0625;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,3:2,1:2,2 +chr3 142919712 . CTTTTTTTTTTTTTTTTT C 0 PASS DP=28;GPV=1;SPV=0.066403;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:7,3:4,2 +chr3 143854335 . A T 0 PASS DP=80;GPV=1;SPV=5.0272e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:22,17:8,8:14,9 +chr3 143929350 . TAG T 0 PASS DP=71;GPV=1;SPV=0.021372;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:13,4:16,1 +chr3 143967825 . AC A 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chr3 147567553 . CA C 0 PASS DP=41;GPV=1;SPV=0.087777;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:14,4:7,1 +chr3 147669410 . C A 0 PASS DP=99;GPV=1;SPV=3.684e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:40,16:14,8:26,8 +chr3 148190448 . A AACACACACACACACACAC 0 PASS DP=49;GPV=1;SPV=0.020817;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:8,4:9,3 +chr3 148565382 . C T 0 PASS DP=56;GPV=1;SPV=0.021135;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:13,4:9,1 +chr3 150111994 . C CAA 0 PASS DP=27;GPV=1;SPV=0.10217;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,4:6,3:2,1 +chr3 151071977 . T TTGTG 0 PASS DP=48;GPV=1;SPV=0.04952;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:11,3:6,5 +chr3 152727690 . AAGAGAGAGAGAGAGAG A 0 PASS DP=27;GPV=1;SPV=0.011438;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,4:3,2:0,2 +chr3 152988157 . T C 0 PASS DP=80;GPV=1;SPV=0.040975;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:9,4:22,6 +chr3 153038706 . T A 0 PASS DP=75;GPV=1;SPV=0.062923;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,3:19,2 +chr3 153264487 . A AAC 0 PASS DP=54;GPV=1;SPV=0.037551;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:15,4:9,1 +chr3 154187380 . A ATT 0 PASS DP=55;GPV=1;SPV=0.00044676;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,12:9,7:6,5 +chr3 154667490 . T C 0 PASS DP=32;GPV=1;SPV=0.10105;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1 +chr3 157202415 . C A 0 PASS DP=87;GPV=1;SPV=0.040969;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:14,6:21,2 +chr3 158518150 . T A 0 PASS DP=30;GPV=1;SPV=0.030556;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:6,1:4,4 +chr3 161289048 . G GT 0 PASS DP=41;GPV=1;SPV=0.1538;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:14,3:7,1 +chr3 163096266 . C CA 0 PASS DP=51;GPV=1;SPV=0.020382;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:23,7:14,5:9,2 +chr3 163902659 . T TAATA 0 PASS DP=38;GPV=1;SPV=0.046295;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,9:9,6:5,3 +chr3 165738521 . CA C 0 PASS DP=40;GPV=1;SPV=0.031556;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,11:5,8:4,3 +chr3 167775225 . T TTTA 0 PASS DP=55;GPV=1;SPV=0.0034869;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:12,5:12,6 +chr3 169550820 . CT C 0 PASS DP=39;GPV=1;SPV=0.024318;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:11,8:4,2:7,6 +chr3 169772316 . C CT 0 PASS DP=33;GPV=1;SPV=0.21107;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,5:10,3:9,2 +chr3 170158927 . G GA 0 PASS DP=42;GPV=1;SPV=0.028751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,9:8,7:10,2 +chr3 170700348 . C CT 0 PASS DP=73;GPV=1;SPV=0.00014726;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:15,9:11,3 +chr3 171478467 . G A 0 PASS DP=74;GPV=1;SPV=2.8834e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:21,22:11,11:10,11 +chr3 171639566 . TA T 0 PASS DP=39;GPV=1;SPV=0.1671;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,5:9,4:9,1 +chr3 172156801 . G C 0 PASS DP=80;GPV=1;SPV=0.031443;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:43,7:18,6:25,1 +chr3 175242572 . T C 0 PASS DP=89;GPV=1;SPV=1.1486e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:31,22:15,8:16,14 +chr3 177090517 . T TAA 0 PASS DP=50;GPV=1;SPV=0.046659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:16,3:5,5 +chr3 178908086 . G A 0 PASS DP=82;GPV=1;SPV=3.1049e-08;SS=2;SSC=75;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:22,23:7,15:15,8 +chr3 179023713 . T A 0 PASS DP=23;GPV=1;SPV=0.024887;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,7:2,3:2,4 +chr3 179624571 . G A 0 PASS DP=44;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,4:18,1:4,3 +chr3 179679794 . GT G 0 PASS DP=25;GPV=1;SPV=0.097744;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,4:8,3:1,1 +chr3 179847051 . C T 0 PASS DP=61;GPV=1;SPV=0.0028187;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:10,6:16,4 +chr3 180010267 . C T 0 PASS DP=29;GPV=1;SPV=0.12884;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:2,3:12,1 +chr3 180276865 . A G 0 PASS DP=61;GPV=1;SPV=0.00082467;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:10,5:15,8 +chr3 180877568 . C T 0 PASS DP=91;GPV=1;SPV=3.8427e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:14,12:13,12 +chr3 181725038 . C CT 0 PASS DP=27;GPV=1;SPV=0.0062713;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,6:1,5:1,1 +chr3 182762165 . C CAA 0 PASS DP=59;GPV=1;SPV=0.010647;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,11:10,7:9,4 +chr3 184075552 . A AACACACACAC 0 PASS DP=44;GPV=1;SPV=0.0086792;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,10:11,7:4,3 +chr3 184542153 . A ACGACGAGACCCAGCTCACAATGGGAC 0 PASS DP=61;GPV=1;SPV=0.036872;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:13,1:14,4 +chr3 184640882 . CTT C 0 PASS DP=28;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:7,3:5,1 +chr3 186625004 . T G 0 PASS DP=78;GPV=1;SPV=0.064931;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:41,5:18,1:23,4 +chr3 188294056 . C CA 0 PASS DP=39;GPV=1;SPV=0.072765;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:16,4:1,0 +chr3 189881272 . T G 0 PASS DP=84;GPV=1;SPV=0.0072131;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:31,1:8,7 +chr3 191528605 . TA T 0 PASS DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:14,2:13,2 +chr3 191528613 . T TA 0 PASS DP=68;GPV=1;SPV=0.060505;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:14,2:16,2 +chr3 191528616 . TA T 0 PASS DP=68;GPV=1;SPV=0.076851;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:16,2:16,2 +chr3 192190468 . C CTTTT 0 PASS DP=27;GPV=1;SPV=0.045652;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:8,4:2,1 +chr3 194092184 . GGTTTT G 0 PASS DP=33;GPV=1;SPV=0.35217;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:9,3:2,1 +chr3 195045214 . CT C 0 PASS DP=28;GPV=1;SPV=0.047826;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,3:4,3 +chr3 195185100 . AG A 0 PASS DP=32;GPV=1;SPV=0.020362;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,5:2,3:2,2 +chr3 195498776 . G A 0 PASS DP=189;GPV=1;SPV=0.046033;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:86,10:62,8:24,2 +chr3 195499154 . C A 0 PASS DP=214;GPV=1;SPV=0.025408;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:97:84,12:46,4:38,8 +chr3 195649841 . CAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAG C 0 PASS DP=62;GPV=1;SPV=0.024221;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:22,2:6,4 +chr3 195730099 . CAAAAAAA C 0 PASS DP=74;GPV=1;SPV=0.043916;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,11:17,9:5,2 +chr3 195857983 . CAAAAAAAAAAAAAAAAA C 0 PASS DP=27;GPV=1;SPV=0.012174;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,8:4,5:2,3 +chr3 195872023 . C T 0 PASS DP=65;GPV=1;SPV=0.039859;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:16,9:12,2 +chr3 196025207 . ACGC A 0 PASS DP=64;GPV=1;SPV=0.065833;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:17,3:16,2 +chr3 196766931 . C CGTGT 0 PASS DP=48;GPV=1;SPV=0.046544;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,9:14,6:3,3 +chr3 196769817 . A G 0 PASS DP=76;GPV=1;SPV=0.010302;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,10:8,3:11,7 +chr3 197652901 . C T 0 PASS DP=69;GPV=1;SPV=0.017918;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,5:20,1:7,4 +chr3 197664611 . A G 0 PASS DP=110;GPV=1;SPV=0.049555;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:44,13:25,9:19,4 +chr3 197665269 . G A 0 PASS DP=91;GPV=1;SPV=0.028535;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:41,15:5,2:36,13 +chr3 198103423 . A C 0 PASS DP=33;GPV=1;SPV=0.018146;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:13,7:9,3:4,4 +chr4 21086 . TA T 0 PASS DP=166;GPV=1;SPV=0.038694;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:94:76,18:34,10:42,8 +chr4 21124 . C T 0 PASS DP=131;GPV=1;SPV=0.019434;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:57,15:16,6:41,9 +chr4 28967 . C T 0 PASS DP=500;GPV=1;SPV=0.020359;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:267:236,31:115,17:121,14 +chr4 30599 . C T 0 PASS DP=267;GPV=1;SPV=0.030157;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:110,15:57,6:53,9 +chr4 47344 . G T 0 PASS DP=430;GPV=1;SPV=0.032683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:235:209,26:108,11:101,15 +chr4 1152938 . C CT 0 PASS DP=27;GPV=1;SPV=0.12913;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:3,5:6,1 +chr4 1357096 . C G 0 PASS DP=98;GPV=1;SPV=0.04248;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:42,11:17,5:25,6 +chr4 1424134 . C CT 0 PASS DP=38;GPV=1;SPV=0.018564;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:11,6:1,2 +chr4 1615502 . C T 0 PASS DP=40;GPV=1;SPV=0.00012864;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:6,9:1,2 +chr4 4076282 . G GTATGTA 0 PASS DP=81;GPV=1;SPV=0.13283;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:28,4:14,1:14,3 +chr4 4857672 . G A 0 PASS DP=95;GPV=1;SPV=0.023724;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:18,5:21,2 +chr4 5740470 . CAA C 0 PASS DP=39;GPV=1;SPV=0.023166;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:7,2:7,3 +chr4 6067677 . G C 0 PASS DP=59;GPV=1;SPV=0.037705;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:22,6:7,3:15,3 +chr4 7362923 . T C 0 PASS DP=59;GPV=1;SPV=0.043286;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,4:5,2:11,2 +chr4 7525810 . C T 0 PASS DP=26;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:3,1:4,3 +chr4 7862415 . C G 0 PASS DP=29;GPV=1;SPV=0.26667;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,2:6,2:0,0 +chr4 8823593 . CAAAAA C 0 PASS DP=43;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,6:2,5:7,1 +chr4 8842317 . T C 0 PASS DP=23;GPV=1;SPV=0.002173;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:2,4:1,5 +chr4 9249263 . G C 0 PASS DP=19;GPV=1;SPV=0.086687;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr4 9710191 . G A 0 PASS DP=103;GPV=1;SPV=2.0186e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:12,16:15,7 +chr4 10778181 . C T 0 PASS DP=57;GPV=1;SPV=0.079656;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:12,3:15,1 +chr4 10953112 . ATCTTTCTTTCTTTCTT A 0 PASS DP=61;GPV=1;SPV=0.0023163;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:15,7:4,2:11,5 +chr4 14436315 . C CAA 0 PASS DP=56;GPV=1;SPV=0.027568;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:16,7:13,4:3,3 +chr4 15790424 . G A 0 PASS DP=126;GPV=1;SPV=0.0084712;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:63,8:35,4:28,4 +chr4 16004829 . T TTCTTTCTTTTTTC 0 PASS DP=42;GPV=1;SPV=0.099968;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,5:4,1:17,4 +chr4 16094108 . GGAGAGAGAGAGAGAGA G 0 PASS DP=37;GPV=1;SPV=0.13971;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,4:12,3:6,1 +chr4 16179788 . T TTATATATATATATATATGTGTATA 0 PASS DP=56;GPV=1;SPV=0.040844;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:11,3:10,3 +chr4 16312513 . CT C 0 PASS DP=59;GPV=1;SPV=0.017433;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:18,7:6,2 +chr4 17182251 . TTG T 0 PASS DP=67;GPV=1;SPV=0.044315;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:15,2:14,5 +chr4 17440806 . C CA 0 PASS DP=46;GPV=1;SPV=0.0047587;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,6:11,3:3,3 +chr4 17703014 . C G 0 PASS DP=101;GPV=1;SPV=7.4469e-09;SS=2;SSC=81;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:29,24:14,11:15,13 +chr4 19226220 . AAT A 0 PASS DP=31;GPV=1;SPV=0.027077;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,9:3,2:7,7 +chr4 19543854 . G A 0 PASS DP=82;GPV=1;SPV=1.7594e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:26,18:14,10:12,8 +chr4 19683119 . C A 0 PASS DP=79;GPV=1;SPV=0.0011232;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:13,5:21,6 +chr4 20748560 . T A 0 PASS DP=26;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:1,4:0,2:1,2 +chr4 22316714 . T C 0 PASS DP=64;GPV=1;SPV=0.092709;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:18,2:14,2 +chr4 22389501 . C CT 0 PASS DP=55;GPV=1;SPV=0.0014573;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,17:6,11:10,6 +chr4 23724299 . C T 0 PASS DP=99;GPV=1;SPV=0.018169;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:46,6:17,5:29,1 +chr4 23727998 . T TAAAA 0 PASS DP=47;GPV=1;SPV=0.010195;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:8,11:5,7:3,4 +chr4 24049324 . G A 0 PASS DP=58;GPV=1;SPV=0.084757;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,2:14,2 +chr4 26210662 . T TC 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:8,2:16,2 +chr4 26210686 . C CTTT 0 PASS DP=41;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:0,1:4,1 +chr4 26793722 . C CA 0 PASS DP=46;GPV=1;SPV=0.022869;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,8:7,7:7,1 +chr4 27175793 . CTTTT C 0 PASS DP=47;GPV=1;SPV=0.0059543;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,6:1,1:9,5 +chr4 27218850 . A AT 0 PASS DP=80;GPV=1;SPV=0.0011791;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:25,7:6,2 +chr4 27808133 . C CTT 0 PASS DP=38;GPV=1;SPV=0.015385;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,8:5,2 +chr4 28359297 . A G 0 PASS DP=85;GPV=1;SPV=0.00079295;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,6:16,4 +chr4 29872258 . C T 0 PASS DP=76;GPV=1;SPV=4.1611e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:14,11:6,6 +chr4 31720292 . G GT 0 PASS DP=17;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,4:1,2:3,2 +chr4 31798786 . C CGTGTGT 0 PASS DP=63;GPV=1;SPV=0.0062769;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,13:12,10:10,3 +chr4 31861304 . A G 0 PASS DP=78;GPV=1;SPV=0.0029048;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:37,11:17,7:20,4 +chr4 32090979 . G A 0 PASS DP=98;GPV=1;SPV=6.109e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:41,16:25,9:16,7 +chr4 32185674 . A T 0 PASS DP=106;GPV=1;SPV=0.002307;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:47,9:24,4:23,5 +chr4 32201646 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.027053;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:6,3:4,3 +chr4 32703978 . C CA 0 PASS DP=63;GPV=1;SPV=0.0014364;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,3:10,7 +chr4 33791174 . G C 0 PASS DP=104;GPV=1;SPV=0.00019843;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:20,8:22,4 +chr4 35203275 . A C 0 PASS DP=31;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,6:9,2:4,4 +chr4 36161793 . CAAAA C 0 PASS DP=36;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:5,3:4,2 +chr4 38733519 . GTGTTGGTGT G 0 PASS DP=55;GPV=1;SPV=0.046608;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:12,5:11,2 +chr4 39621686 . CTTT C 0 PASS DP=48;GPV=1;SPV=0.011976;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,8:10,7:2,1 +chr4 40579423 . G A 0 PASS DP=32;GPV=1;SPV=0.028261;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:5,2:4,4 +chr4 40862856 . CAA C 0 PASS DP=44;GPV=1;SPV=0.021719;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,12:15,11:2,1 +chr4 43758090 . A G 0 PASS DP=44;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:8,2:14,2 +chr4 44556770 . A G 0 PASS DP=48;GPV=1;SPV=0.047147;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:9,3:13,2 +chr4 45867458 . G GTGTATATATATATATA 0 PASS DP=22;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,4:3,2:4,2 +chr4 46289907 . ATT A 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:22,3:12,2 +chr4 48054636 . T G 0 PASS DP=33;GPV=1;SPV=0.17909;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:7,1:12,4 +chr4 48328708 . T A 0 PASS DP=58;GPV=1;SPV=0.0087456;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,4:10,3 +chr4 48525196 . T C 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:6,4:7,6 +chr4 49092498 . C CTCCAT 0 PASS DP=27;GPV=1;SPV=0.041176;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:5,4:3,2:2,2 +chr4 49158430 . C A 0 PASS DP=304;GPV=1;SPV=0.031269;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:165:141,24:84,16:57,8 +chr4 49160935 . CA C 0 PASS DP=84;GPV=1;SPV=0.017397;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:39,15:19,6:20,9 +chr4 49165571 . G T 0 PASS DP=215;GPV=1;SPV=0.018516;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:88,17:56,9:32,8 +chr4 49165572 . G A 0 PASS DP=212;GPV=1;SPV=0.042337;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:103:88,15:56,7:32,8 +chr4 49166740 . A T 0 PASS DP=126;GPV=1;SPV=0.020034;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:20,9:36,7 +chr4 49172846 . C T 0 PASS DP=220;GPV=1;SPV=0.038903;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:95,11:59,6:36,5 +chr4 49203841 . C T 0 PASS DP=100;GPV=1;SPV=0.0047291;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:48,14:24,9:24,5 +chr4 49265404 . G A 0 PASS DP=231;GPV=1;SPV=0.011339;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:107,18:56,10:51,8 +chr4 49303883 . A C 0 PASS DP=403;GPV=1;SPV=0.049703;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:217:183,34:57,17:126,17 +chr4 49322686 . A C 0 PASS DP=183;GPV=1;SPV=0.028229;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:80,19:50,10:30,9 +chr4 49487962 . T C 0 PASS DP=484;GPV=1;SPV=0.028327;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:254:214,40:132,28:82,12 +chr4 49489739 . TA T 0 PASS DP=258;GPV=1;SPV=0.037715;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:109,22:77,18:32,4 +chr4 49496839 . C T 0 PASS DP=157;GPV=1;SPV=0.033017;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:76:62,14:33,8:29,6 +chr4 49519551 . CT C 0 PASS DP=115;GPV=1;SPV=0.011027;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:67:59,8:31,2:28,6 +chr4 49527442 . G A 0 PASS DP=162;GPV=1;SPV=0.010246;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:84:63,20:39,15:24,5 +chr4 49529342 . G C 0 PASS DP=592;GPV=1;SPV=0.0055449;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:317:277,40:165,24:112,16 +chr4 49533523 . G A 0 PASS DP=145;GPV=1;SPV=0.046806;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:61,11:41,5:20,6 +chr4 49537433 . C G 0 PASS DP=115;GPV=1;SPV=0.019956;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:46,16:22,12:24,4 +chr4 49542539 . G A 0 PASS DP=427;GPV=1;SPV=0.0057894;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:173,28:108,19:65,9 +chr4 49555640 . AG A 0 PASS DP=202;GPV=1;SPV=0.022795;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:86,18:50,14:36,4 +chr4 49575288 . T C 0 PASS DP=830;GPV=1;SPV=0.0027971;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:443:393,50:222,14:171,36 +chr4 49586916 . A G 0 PASS DP=79;GPV=1;SPV=0.068062;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:42,5:22,1:20,4 +chr4 49850379 . T A 0 PASS DP=61;GPV=1;SPV=0.037462;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,6:13,4 +chr4 49851921 . A C 0 PASS DP=32;GPV=1;SPV=0.0094549;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,5:6,2 +chr4 49939383 . A T 0 PASS DP=54;GPV=1;SPV=0.14664;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:30,4:0,0 +chr4 50038969 . A G 0 PASS DP=81;GPV=1;SPV=0.033201;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,3:20,2 +chr4 50184328 . C G 0 PASS DP=64;GPV=1;SPV=0.022285;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:7,1:19,4 +chr4 50313315 . A G 0 PASS DP=19;GPV=1;SPV=0.16374;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr4 50463062 . G C 0 PASS DP=23;GPV=1;SPV=0.14229;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,2:0,0 +chr4 51200019 . T C 0 PASS DP=16;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:5,2:0,1 +chr4 51366296 . T A 0 PASS DP=50;GPV=1;SPV=0.010902;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:21,7:1,1 +chr4 51482938 . C T 0 PASS DP=21;GPV=1;SPV=0.17143;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:0,0:7,2 +chr4 55112523 . ATT A 0 PASS DP=54;GPV=1;SPV=0.02825;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:15,6:5,4 +chr4 55599562 . C A 0 PASS DP=80;GPV=1;SPV=9.2297e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:20,14:11,8:9,6 +chr4 57004352 . CT C 0 PASS DP=37;GPV=1;SPV=0.0038335;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:7,3:1,4 +chr4 57745313 . C T 0 PASS DP=94;GPV=1;SPV=4.6766e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:11,9:22,8 +chr4 62365096 . A AAGAGAGAGAGAGAGAG 0 PASS DP=58;GPV=1;SPV=0.00062679;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,12:2,6:12,6 +chr4 62386861 . TAATTA T 0 PASS DP=64;GPV=1;SPV=0.047782;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,4:11,2:12,2 +chr4 62461367 . G GTA 0 PASS DP=22;GPV=1;SPV=0.098383;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:6,4:3,1 +chr4 63196055 . A G 0 PASS DP=51;GPV=1;SPV=0.047649;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:9,2:12,5 +chr4 65150951 . CTCTTTCTT C 0 PASS DP=23;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:4,2:1,1:3,1 +chr4 65879955 . G T 0 PASS DP=93;GPV=1;SPV=5.7369e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:19,6:18,9 +chr4 67908105 . C T 0 PASS DP=77;GPV=1;SPV=2.2487e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:12,11:16,6 +chr4 68430719 . C A 0 PASS DP=76;GPV=1;SPV=3.7488e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:19,16:9,10:10,6 +chr4 71724273 . G GT 0 PASS DP=30;GPV=1;SPV=0.046584;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,4:6,3:2,1 +chr4 72041131 . C T 0 PASS DP=85;GPV=1;SPV=6.0035e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:12,6:17,6 +chr4 74589660 . A AAAGAAAAAGAAAGAAAGAAAG 0 PASS DP=75;GPV=1;SPV=0.023057;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,11:14,7:12,4 +chr4 75109844 . G A 0 PASS DP=51;GPV=1;SPV=0.35714;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,2:2,1:1,1 +chr4 75132082 . C T 0 PASS DP=98;GPV=1;SPV=0.025792;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:17,3:24,4 +chr4 75648366 . A C 0 PASS DP=64;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:5,2:3,1:2,1 +chr4 76916700 . C T 0 PASS DP=75;GPV=1;SPV=0.0097756;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:18,5:13,9 +chr4 76918370 . C G 0 PASS DP=172;GPV=1;SPV=0.042657;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:80,13:29,7:51,6 +chr4 77797102 . C CA 0 PASS DP=41;GPV=1;SPV=0.043236;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,6:5,5:5,1 +chr4 78930885 . T C 0 PASS DP=72;GPV=1;SPV=0.023736;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:18,11:11,4:7,7 +chr4 80729592 . CT C 0 PASS DP=35;GPV=1;SPV=0.037466;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:9,5:3,2 +chr4 83466706 . T G 0 PASS DP=80;GPV=1;SPV=0.0011564;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:23,7:13,5 +chr4 83578938 . T TTTC 0 PASS DP=47;GPV=1;SPV=0.098394;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:2,1:21,3 +chr4 84635633 . T G 0 PASS DP=66;GPV=1;SPV=0.10299;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:2,1:35,4 +chr4 84784885 . TATATATAC T 0 PASS DP=34;GPV=1;SPV=0.045792;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,7:10,2:2,5 +chr4 85570379 . T TTTC 0 PASS DP=55;GPV=1;SPV=0.10779;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:15,4:7,2:8,2 +chr4 86932059 . G A 0 PASS DP=38;GPV=1;SPV=0.012384;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,5:4,1:1,4 +chr4 87505725 . T G 0 PASS DP=66;GPV=1;SPV=0.056777;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:11,1:18,3 +chr4 88231894 . C CTCTCTCTCTCTGTG 0 PASS DP=41;GPV=1;SPV=0.021064;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:12,11:8,3:4,8 +chr4 91138278 . A G 0 PASS DP=22;GPV=1;SPV=0.004644;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,7:5,2:0,5 +chr4 91879966 . A T 0 PASS DP=81;GPV=1;SPV=3.0683e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:7,7:18,9 +chr4 94087635 . C G 0 PASS DP=76;GPV=1;SPV=0.035616;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:14,2:21,3 +chr4 95130728 . T C 0 PASS DP=53;GPV=1;SPV=0.036816;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,7:10,2:7,5 +chr4 98021197 . T C 0 PASS DP=58;GPV=1;SPV=0.014547;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:14,5:6,5 +chr4 98308297 . C CTATATATATATATA 0 PASS DP=32;GPV=1;SPV=0.026054;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:7,5:4,1 +chr4 98651864 . CTTT C 0 PASS DP=21;GPV=1;SPV=0.013932;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:1,3:2,2 +chr4 98809849 . T C 0 PASS DP=43;GPV=1;SPV=0.11166;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,4:7,3:7,1 +chr4 99506685 . T C 0 PASS DP=63;GPV=1;SPV=0.098889;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:12,1:20,3 +chr4 99580151 . T A 0 PASS DP=56;GPV=1;SPV=1.6764e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,4:7,7 +chr4 99879928 . CCTA C 0 PASS DP=58;GPV=1;SPV=0.011404;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:10,12:12,3 +chr4 100244880 . T A 0 PASS DP=80;GPV=1;SPV=0.0077364;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:19,4:12,2 +chr4 100394409 . G T 0 PASS DP=70;GPV=1;SPV=0.036308;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:14,5:17,3 +chr4 100864149 . T TCTGTTTTGGTACCAAAACCATG 0 PASS DP=46;GPV=1;SPV=0.11667;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:10,2:10,1 +chr4 102104244 . A AT 0 PASS DP=60;GPV=1;SPV=0.0060915;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:11,8:10,1 +chr4 102864425 . G A 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:10,7:8,3 +chr4 104192187 . AGTGTGTGT A 0 PASS DP=69;GPV=1;SPV=0.00042498;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,16:13,12:10,4 +chr4 104844854 . C T 0 PASS DP=92;GPV=1;SPV=1.3642e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:14,15:14,6 +chr4 105621869 . G A 0 PASS DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:11,6:16,8 +chr4 108175384 . C T 0 PASS DP=53;GPV=1;SPV=0.044595;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:19,5:1,1 +chr4 109239396 . A G 0 PASS DP=67;GPV=1;SPV=0.2066;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:10,4:6,1:4,3 +chr4 109600286 . G T 0 PASS DP=81;GPV=1;SPV=1.0945e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:11,13:11,7 +chr4 110333607 . CT C 0 PASS DP=53;GPV=1;SPV=0.049659;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:13,3:12,2 +chr4 111158096 . A T 0 PASS DP=100;GPV=1;SPV=1.4098e-13;SS=2;SSC=128;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:17,29:9,14:8,15 +chr4 116499744 . A T 0 PASS DP=68;GPV=1;SPV=0.081098;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:18,1:15,3 +chr4 118645727 . C T 0 PASS DP=54;GPV=1;SPV=0.0092391;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,14:7,3:12,11 +chr4 122130051 . G C 0 PASS DP=87;GPV=1;SPV=2.6286e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:35,19:20,7:15,12 +chr4 122811152 . C A 0 PASS DP=80;GPV=1;SPV=0.075047;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:28,5:16,4:12,1 +chr4 122811153 . C G 0 PASS DP=78;GPV=1;SPV=0.065377;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:26,5:15,4:11,1 +chr4 122918612 . A G 0 PASS DP=79;GPV=1;SPV=8.7554e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:23,13:14,10:9,3 +chr4 124870777 . CTT C 0 PASS DP=36;GPV=1;SPV=0.0092505;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,5:2,2:8,3 +chr4 125372363 . C CA 0 PASS DP=46;GPV=1;SPV=0.00052629;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,12:4,8:6,4 +chr4 125416368 . AT A 0 PASS DP=66;GPV=1;SPV=0.00054114;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:14,5:6,3 +chr4 125814620 . T TAC 0 PASS DP=66;GPV=1;SPV=0.030258;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:16,7:10,3 +chr4 126826572 . G GTATA 0 PASS DP=24;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:6,8:6,7:0,1 +chr4 126826600 . A G 0 PASS DP=29;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:5,2:3,1:2,1 +chr4 128112466 . A AT 0 PASS DP=21;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:3,3:3,2 +chr4 128166964 . CTCTCTCTA C 0 PASS DP=42;GPV=1;SPV=0.0070686;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,6:3,4:10,2 +chr4 128569414 . G GTC 0 PASS DP=64;GPV=1;SPV=0.026923;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:15,6:11,5 +chr4 130205019 . C A 0 PASS DP=100;GPV=1;SPV=1.7469e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:31,26:16,13:15,13 +chr4 130270827 . G GT 0 PASS DP=28;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:1,4:7,1 +chr4 130854009 . T A 0 PASS DP=81;GPV=1;SPV=0.00013424;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:33,15:17,11:16,4 +chr4 131135835 . G GCACACA 0 PASS DP=57;GPV=1;SPV=0.045915;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,10:10,8:11,2 +chr4 131740266 . G T 0 PASS DP=38;GPV=1;SPV=0.004483;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:2,2:9,4 +chr4 132831138 . G T 0 PASS DP=81;GPV=1;SPV=0.00029821;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:32,12:18,6:14,6 +chr4 132902637 . A G 0 PASS DP=37;GPV=1;SPV=0.060413;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,4:5,1 +chr4 133496249 . TATATAC T 0 PASS DP=48;GPV=1;SPV=0.037594;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:8,3:10,1 +chr4 134641189 . A G 0 PASS DP=71;GPV=1;SPV=0.010272;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,7:10,3 +chr4 134956521 . A AT 0 PASS DP=43;GPV=1;SPV=0.19246;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:13,1:12,3 +chr4 137022669 . G GA 0 PASS DP=65;GPV=1;SPV=0.040564;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:21,5:6,2 +chr4 138854401 . A G 0 PASS DP=47;GPV=1;SPV=0.22535;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:26,3:11,2:15,1 +chr4 138923840 . A C 0 PASS DP=67;GPV=1;SPV=0.11029;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:4,2:2,1:2,1 +chr4 140614921 . CA C 0 PASS DP=47;GPV=1;SPV=0.0095364;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,9:11,6:2,3 +chr4 140983742 . T A 0 PASS DP=61;GPV=1;SPV=0.0014575;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:11,4:10,4 +chr4 141119050 . C T 0 PASS DP=56;GPV=1;SPV=0.013909;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:6,1:14,4 +chr4 145215419 . G GTTTTTTTT 0 PASS DP=33;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,4:5,3:8,1 +chr4 146765921 . C T 0 PASS DP=96;GPV=1;SPV=7.0418e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:35,17:20,8:15,9 +chr4 147798761 . CTCTCTCTCTCTCTCTCTCTCTATATATATATATATA C 0 PASS DP=21;GPV=1;SPV=0.013369;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:2,6:0,3:2,3 +chr4 147867863 . CA C 0 PASS DP=29;GPV=1;SPV=0.018307;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,6:2,5:3,1 +chr4 149267825 . G A 0 PASS DP=78;GPV=1;SPV=2.862e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:25,18:9,12:16,6 +chr4 150086512 . T A 0 PASS DP=80;GPV=1;SPV=0.0064693;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:17,5:12,6 +chr4 150754542 . AG A 0 PASS DP=31;GPV=1;SPV=0.043423;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:5,3:7,2 +chr4 153163495 . C A 0 PASS DP=34;GPV=1;SPV=0.011312;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:4,8:2,2:2,6 +chr4 153456166 . G GAA 0 PASS DP=72;GPV=1;SPV=0.11527;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:45,6:24,2:21,4 +chr4 153895592 . G GTTT 0 PASS DP=17;GPV=1;SPV=0.26923;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,2:5,2:0,0 +chr4 155173126 . A G 0 PASS DP=78;GPV=1;SPV=0.031711;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:19,2:20,4 +chr4 155982067 . G A 0 PASS DP=83;GPV=1;SPV=4.2063e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:13,10:18,5 +chr4 157669914 . T A 0 PASS DP=92;GPV=1;SPV=1.0479e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:34,17:14,8:20,9 +chr4 158916630 . T C 0 PASS DP=69;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,5:8,4:13,1 +chr4 158916631 . G A 0 PASS DP=71;GPV=1;SPV=0.074336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,5:8,4:14,1 +chr4 159005221 . C CA 0 PASS DP=35;GPV=1;SPV=0.030455;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:6,6:5,1 +chr4 159430345 . C T 0 PASS DP=48;GPV=1;SPV=0.00029985;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,10:6,5:8,5 +chr4 160360770 . C CTT 0 PASS DP=34;GPV=1;SPV=0.0025584;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:5,5:3,5 +chr4 161052263 . C CTCTCTCTA 0 PASS DP=19;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:2,1:1,1 +chr4 161186214 . A T 0 PASS DP=80;GPV=1;SPV=8.3642e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:18,6:14,10 +chr4 161342541 . TTTATGTTATGTTATG T 0 PASS DP=47;GPV=1;SPV=0.043779;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:7,3:8,4 +chr4 162351929 . T C 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:3,1:2,3 +chr4 162485398 . GA G 0 PASS DP=43;GPV=1;SPV=0.0014491;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:11,3:3,6 +chr4 162657510 . AGAC A 0 PASS DP=52;GPV=1;SPV=0.056049;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:16,4:8,1 +chr4 162915733 . G A 0 PASS DP=79;GPV=1;SPV=0.00047367;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:22,5:9,6 +chr4 163199042 . A T 0 PASS DP=82;GPV=1;SPV=2.4696e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:10,8:15,8 +chr4 163223224 . C CA 0 PASS DP=72;GPV=1;SPV=0.031154;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:22,2:10,3 +chr4 164497765 . G GAA 0 PASS DP=50;GPV=1;SPV=0.0037259;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,14:8,11:6,3 +chr4 165014989 . T A 0 PASS DP=42;GPV=1;SPV=0.11647;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,5:4,3:8,2 +chr4 166363782 . C T 0 PASS DP=76;GPV=1;SPV=9.0495e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:22,18:12,10:10,8 +chr4 166665954 . A AATATATATG 0 PASS DP=57;GPV=1;SPV=0.024887;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,8:0,6:3,2 +chr4 166666013 . T TA 0 PASS DP=69;GPV=1;SPV=0.1172;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:20,3:20,2 +chr4 166666014 . G T 0 PASS DP=70;GPV=1;SPV=0.10871;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:40,5:21,3:19,2 +chr4 167109021 . A T 0 PASS DP=40;GPV=1;SPV=0.021089;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:15,13:3,2:12,11 +chr4 167975896 . A G 0 PASS DP=75;GPV=1;SPV=9.4913e-08;SS=2;SSC=70;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:18,18:9,9:9,9 +chr4 171518253 . CT C 0 PASS DP=74;GPV=1;SPV=0.017274;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:15,3:14,2 +chr4 171518255 . A G 0 PASS DP=70;GPV=1;SPV=0.0069114;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:13,3:13,3 +chr4 171656936 . G GTA 0 PASS DP=28;GPV=1;SPV=0.016254;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,5:5,4:0,1 +chr4 173754359 . G A 0 PASS DP=89;GPV=1;SPV=0.0033601;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:25,7:10,7 +chr4 174859389 . C T 0 PASS DP=35;GPV=1;SPV=0.013587;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,3:7,5 +chr4 174862643 . A ATGTGTGTG 0 PASS DP=48;GPV=1;SPV=0.021726;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,9:11,7:4,2 +chr4 176076213 . TA T 0 PASS DP=49;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:12,4:8,3:4,1 +chr4 176421497 . A AT 0 PASS DP=75;GPV=1;SPV=6.6461e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:10,9:18,6 +chr4 177498550 . G GATATATATATATATATATAT 0 PASS DP=37;GPV=1;SPV=0.058687;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:13,2:2,2 +chr4 177885341 . C CAAA 0 PASS DP=43;GPV=1;SPV=0.004156;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,9:4,6:0,3 +chr4 179122135 . T C 0 PASS DP=72;GPV=1;SPV=0.0032257;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:29,8:15,5:14,3 +chr4 179566552 . C CTTTTTTTT 0 PASS DP=31;GPV=1;SPV=0.0067977;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:4,2:5,4 +chr4 180439431 . T TTA 0 PASS DP=49;GPV=1;SPV=0.19231;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:4,2:1,1:3,1 +chr4 183407768 . CTT C 0 PASS DP=52;GPV=1;SPV=0.0097931;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,14:7,5:11,9 +chr4 183874991 . A G 0 PASS DP=22;GPV=1;SPV=0.04257;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,6:4,3:1,3 +chr4 184133165 . A T 0 PASS DP=73;GPV=1;SPV=0.011528;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:13,7:10,6:3,1 +chr4 185584163 . GC G 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,10:8,9:5,1 +chr4 185874841 . G GC 0 PASS DP=69;GPV=1;SPV=0.024131;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:14,4:18,6 +chr4 185874842 . G A 0 PASS DP=59;GPV=1;SPV=0.012735;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:14,4:10,6 +chr4 185985229 . TTTTC T 0 PASS DP=54;GPV=1;SPV=0.045915;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,10:6,1:15,9 +chr4 186540733 . C A 0 PASS DP=41;GPV=1;SPV=0.051203;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:8,3:12,3 +chr4 187466874 . G T 0 PASS DP=83;GPV=1;SPV=0.079813;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,5:19,3:13,2 +chr4 187652621 . C CT 0 PASS DP=41;GPV=1;SPV=0.014141;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,8:6,1 +chr4 187901083 . G T 0 PASS DP=68;GPV=1;SPV=0.00012624;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:10,4:12,7 +chr4 188246179 . C T 0 PASS DP=82;GPV=1;SPV=3.46e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:16,10:14,5 +chr4 188270840 . A AGCC 0 PASS DP=43;GPV=1;SPV=0.062683;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,5:10,1:6,4 +chr4 188659313 . G A 0 PASS DP=135;GPV=1;SPV=9.4727e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:42,26:20,9:22,17 +chr4 188765953 . CA C 0 PASS DP=52;GPV=1;SPV=0.0031851;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,12:12,10:6,2 +chr5 110378 . T C 0 PASS DP=35;GPV=1;SPV=0.062683;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:9,4:7,1 +chr5 302652 . A G 0 PASS DP=48;GPV=1;SPV=0.007417;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,15:13,11:5,4 +chr5 727404 . C T 0 PASS DP=34;GPV=1;SPV=0.009628;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,10:5,6:5,4 +chr5 1047356 . ATGAG A 0 PASS DP=42;GPV=1;SPV=0.0033308;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,13:7,4:6,9 +chr5 1238415 . G GA 0 PASS DP=43;GPV=1;SPV=0.12114;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:13,2:9,2 +chr5 2124221 . G A 0 PASS DP=91;GPV=1;SPV=6.3214e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:9,9:26,5 +chr5 2406565 . CT C 0 PASS DP=48;GPV=1;SPV=0.0062506;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,2:7,3 +chr5 3961564 . T C 0 PASS DP=85;GPV=1;SPV=3.0255e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:11,10:19,4 +chr5 4064997 . A C 0 PASS DP=81;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:36:0,2:0,2:0,0 +chr5 5610645 . A G 0 PASS DP=54;GPV=1;SPV=0.16368;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:27,3:4,1:23,2 +chr5 5816583 . ATG A 0 PASS DP=27;GPV=1;SPV=0.0051869;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,10:6,2:2,8 +chr5 7372251 . A C 0 PASS DP=44;GPV=1;SPV=0.083867;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,4:14,1 +chr5 8775499 . CTTTT C 0 PASS DP=27;GPV=1;SPV=0.010145;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:1,4:7,2 +chr5 9186029 . T G 0 PASS DP=86;GPV=1;SPV=3.4522e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:14,8:16,11 +chr5 9581458 . C T 0 PASS DP=78;GPV=1;SPV=1.4522e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:10,4:16,11 +chr5 9761414 . GA G 0 PASS DP=55;GPV=1;SPV=0.021052;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:20,5:6,2 +chr5 10733208 . A G 0 PASS DP=48;GPV=1;SPV=0.012681;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:11,10:2,3:9,7 +chr5 13816555 . A G 0 PASS DP=51;GPV=1;SPV=0.0023514;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,9:10,1 +chr5 14609621 . ATTTTTTTTTT A 0 PASS DP=30;GPV=1;SPV=0.016425;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:6,4:1,3 +chr5 14878438 . ATTT A 0 PASS DP=52;GPV=1;SPV=0.0014893;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:13,11:7,9:6,2 +chr5 15089076 . G T 0 PASS DP=81;GPV=1;SPV=0.00062483;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:16,6:13,3 +chr5 16242555 . T TA 0 PASS DP=56;GPV=1;SPV=0.0015751;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:17,7:3,2 +chr5 16411124 . G A 0 PASS DP=104;GPV=1;SPV=2.1466e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:14,7:22,6 +chr5 16818410 . G GTATATATATATA 0 PASS DP=44;GPV=1;SPV=0.076923;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,2:0,0:2,2 +chr5 16942100 . CTT C 0 PASS DP=31;GPV=1;SPV=0.11166;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:9,3:5,1 +chr5 17113048 . CA C 0 PASS DP=34;GPV=1;SPV=0.035372;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:4,5:4,1 +chr5 19743921 . CAAAAAA C 0 PASS DP=40;GPV=1;SPV=0.045151;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,7:7,6:6,1 +chr5 20356751 . C A 0 PASS DP=60;GPV=1;SPV=0.027967;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:11,7:14,1 +chr5 20734951 . C T 0 PASS DP=112;GPV=1;SPV=0.020776;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:50,8:21,6:29,2 +chr5 20838145 . A C 0 PASS DP=36;GPV=1;SPV=0.16667;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:2,2:1,1:1,1 +chr5 21222942 . T TTTTC 0 PASS DP=62;GPV=1;SPV=0.023954;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,5:8,3:17,2 +chr5 21265262 . G A 0 PASS DP=73;GPV=1;SPV=0.00076085;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:17,7:11,3 +chr5 21478808 . A G 0 PASS DP=125;GPV=1;SPV=0.0016094;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:48,23:26,20:22,3 +chr5 21735669 . A ATTT 0 PASS DP=43;GPV=1;SPV=0.046549;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:9,4:6,2 +chr5 22460713 . A ATTTTTT 0 PASS DP=25;GPV=1;SPV=0.048055;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:6,5:3,1:3,4 +chr5 22470415 . T A 0 PASS DP=63;GPV=1;SPV=0.016905;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:26,9:9,8:17,1 +chr5 25997143 . G A 0 PASS DP=63;GPV=1;SPV=0.012627;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:20,5:10,3 +chr5 26058682 . A ATT 0 PASS DP=48;GPV=1;SPV=0.011327;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:11,5:5,4 +chr5 26442455 . T TGATAGATA 0 PASS DP=61;GPV=1;SPV=0.0067906;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:8,7:13,9 +chr5 27790901 . C T 0 PASS DP=35;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:10,2:5,4 +chr5 27835934 . A C 0 PASS DP=25;GPV=1;SPV=0.12281;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,2:3,1:2,1 +chr5 28251874 . GAAAGAAAA G 0 PASS DP=63;GPV=1;SPV=0.00011781;SS=2;SSC=39;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,9:12,8:4,1 +chr5 28251886 . G A 0 PASS DP=60;GPV=1;SPV=0.0057854;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,9:10,8:3,1 +chr5 30358840 . GAA G 0 PASS DP=24;GPV=1;SPV=0.016317;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,5:2,4:0,1 +chr5 30922728 . A G 0 PASS DP=69;GPV=1;SPV=0.50909;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:6,2:2,1:4,1 +chr5 31199458 . GTA G 0 PASS DP=44;GPV=1;SPV=0.10502;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,3:5,2:10,1 +chr5 32158132 . T TACACACAC 0 PASS DP=41;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,6:2,5:0,1 +chr5 34189559 . C T 0 PASS DP=445;GPV=1;SPV=0.035198;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:224:189,35:127,20:62,15 +chr5 38395421 . A T 0 PASS DP=84;GPV=1;SPV=7.3814e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:26,19:15,8:11,11 +chr5 42069239 . T TTTC 0 PASS DP=60;GPV=1;SPV=0.049793;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:18,8:9,3:9,5 +chr5 42579149 . GAT G 0 PASS DP=69;GPV=1;SPV=0.015826;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,9:8,3:12,6 +chr5 42728250 . TTCTCTCTCTCTCTCTC T 0 PASS DP=28;GPV=1;SPV=0.1866;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,7:5,5:6,2 +chr5 44685791 . C T 0 PASS DP=56;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,4:9,2:9,2 +chr5 46663721 . G C 0 PASS DP=85;GPV=1;SPV=0.015572;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:35,11:10,2:25,9 +chr5 46972870 . A C 0 PASS DP=46;GPV=1;SPV=0.12547;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:14,3:10,1 +chr5 46985293 . T C 0 PASS DP=66;GPV=1;SPV=0.081731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:32,4:32,4:0,0 +chr5 47002249 . T A 0 PASS DP=90;GPV=1;SPV=0.044762;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:34,6:7,1 +chr5 47073942 . G C 0 PASS DP=23;GPV=1;SPV=0.11304;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr5 47103778 . A T 0 PASS DP=142;GPV=1;SPV=7.8805e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:64,15:31,6:33,9 +chr5 48226543 . A G 0 PASS DP=17;GPV=1;SPV=0.20588;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 50140189 . G T 0 PASS DP=419;GPV=1;SPV=0.0033206;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:201:167,34:99,30:68,4 +chr5 50143487 . G T 0 PASS DP=692;GPV=1;SPV=0.043168;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:379:333,42:181,23:152,19 +chr5 50414528 . C CAA 0 PASS DP=40;GPV=1;SPV=0.032243;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,3:3,1 +chr5 51895903 . G A 0 PASS DP=82;GPV=1;SPV=0.00022582;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:35,15:18,6:17,9 +chr5 52891262 . C CTT 0 PASS DP=49;GPV=1;SPV=0.025265;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:13,9:8,7:5,2 +chr5 53271173 . C T 0 PASS DP=95;GPV=1;SPV=2.3788e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:29,26:19,13:10,13 +chr5 53492812 . ATTATATATATAATATATGTATATAATT A 0 PASS DP=52;GPV=1;SPV=0.030757;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:8,4:10,2 +chr5 53993046 . C CA 0 PASS DP=79;GPV=1;SPV=0.022271;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:33,5:13,3:20,2 +chr5 54935204 . T G 0 PASS DP=52;GPV=1;SPV=0.010099;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:6,2:10,5 +chr5 56166165 . C T 0 PASS DP=36;GPV=1;SPV=0.016993;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr5 58350170 . A ATG 0 PASS DP=29;GPV=1;SPV=0.062963;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,5:4,4:8,1 +chr5 60863625 . C T 0 PASS DP=80;GPV=1;SPV=5.5913e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,10:14,3 +chr5 61569371 . G T 0 PASS DP=84;GPV=1;SPV=1.1442e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:10,11:10,5 +chr5 62470816 . CTTTTT C 0 PASS DP=33;GPV=1;SPV=0.00043849;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,10:3,8:4,2 +chr5 63823958 . T C 0 PASS DP=55;GPV=1;SPV=0.048842;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:26,5:17,3:9,2 +chr5 64606043 . G T 0 PASS DP=38;GPV=1;SPV=0.027027;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:16,6:5,4:11,2 +chr5 64878470 . TA T 0 PASS DP=18;GPV=1;SPV=0.0090498;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:3,5:2,4:1,1 +chr5 65004936 . T C 0 PASS DP=29;GPV=1;SPV=0.0036482;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,13:1,6:5,7 +chr5 65321708 . CTTTT C 0 PASS DP=21;GPV=1;SPV=0.04257;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:5,6:1,1:4,5 +chr5 66522544 . TA T 0 PASS DP=75;GPV=1;SPV=0.02849;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:18,1:13,9 +chr5 69631390 . G C 0 PASS DP=40;GPV=1;SPV=0.080042;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr5 69911442 . G A 0 PASS DP=86;GPV=1;SPV=0.049167;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:43,5:42,4:1,1 +chr5 70339524 . C T 0 PASS DP=151;GPV=1;SPV=0.019787;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:44,1:30,8 +chr5 70378692 . G C 0 PASS DP=76;GPV=1;SPV=0.0049019;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:15,7:10,6 +chr5 70778416 . T G 0 PASS DP=167;GPV=1;SPV=0.03043;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:76,16:38,7:38,9 +chr5 71116274 . CA C 0 PASS DP=120;GPV=1;SPV=0.00018069;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:33,20:27,17:6,3 +chr5 71175667 . A G 0 PASS DP=20;GPV=1;SPV=0.14737;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:6,2:0,0 +chr5 71618544 . C T 0 PASS DP=40;GPV=1;SPV=0.065489;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:5,3:12,1 +chr5 71721271 . A G 0 PASS DP=73;GPV=1;SPV=0.03726;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:15,7:6,5:9,2 +chr5 72102894 . C A 0 PASS DP=38;GPV=1;SPV=0.37564;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:12,4:3,1:9,3 +chr5 77378046 . AC A 0 PASS DP=70;GPV=1;SPV=0.072233;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,4:9,1:9,3 +chr5 80692235 . CAT C 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:11,3:4,1 +chr5 80693224 . G A 0 PASS DP=32;GPV=1;SPV=0.10779;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,2:6,2 +chr5 81293248 . C G 0 PASS DP=51;GPV=1;SPV=0.035434;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,3:8,1 +chr5 82929000 . C CTTT 0 PASS DP=52;GPV=1;SPV=0.043209;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,8:10,7:8,1 +chr5 83350869 . G T 0 PASS DP=87;GPV=1;SPV=0.023022;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:15,1:22,4 +chr5 83650632 . CT C 0 PASS DP=37;GPV=1;SPV=0.044511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,8:11,7:2,1 +chr5 83737041 . T TAGAGAG 0 PASS DP=30;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,4:5,2:7,2 +chr5 83764973 . A T 0 PASS DP=73;GPV=1;SPV=2.8066e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:23,19:8,13:15,6 +chr5 84522919 . A T 0 PASS DP=86;GPV=1;SPV=0.0019161;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:14,5:16,2 +chr5 85396299 . C T 0 PASS DP=90;GPV=1;SPV=3.295e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,13:14,3:11,10 +chr5 85425650 . C T 0 PASS DP=89;GPV=1;SPV=5.6e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:13,10:18,7 +chr5 89176455 . A G 0 PASS DP=80;GPV=1;SPV=1.4111e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:11,6:11,9 +chr5 89187090 . A T 0 PASS DP=62;GPV=1;SPV=0.011977;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:25,6:13,2:12,4 +chr5 89414231 . C T 0 PASS DP=79;GPV=1;SPV=0.00059141;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:36,15:19,8:17,7 +chr5 95078039 . C CATGTATCTGTCT 0 PASS DP=32;GPV=1;SPV=0.13473;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:11,2:5,2 +chr5 97577406 . C T 0 PASS DP=81;GPV=1;SPV=2.9514e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:17,5:13,11 +chr5 97629863 . T A 0 PASS DP=62;GPV=1;SPV=0.060295;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:27,4:16,3:11,1 +chr5 97629864 . A C 0 PASS DP=56;GPV=1;SPV=0.12627;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,3:11,1 +chr5 98138582 . C A 0 PASS DP=41;GPV=1;SPV=0.0094148;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,4:5,6 +chr5 98756790 . T C 0 PASS DP=86;GPV=1;SPV=7.6074e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:16,14:11,5 +chr5 98864517 . CAA C 0 PASS DP=30;GPV=1;SPV=0.034767;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:10,7:3,1 +chr5 99225249 . G GC 0 PASS DP=84;GPV=1;SPV=0.010345;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:41,8:25,3:16,5 +chr5 99402438 . G A 0 PASS DP=73;GPV=1;SPV=0.00039484;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:11,10:9,6 +chr5 99642003 . C T 0 PASS DP=94;GPV=1;SPV=3.2141e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:33,27:22,17:11,10 +chr5 100493024 . AAT A 0 PASS DP=34;GPV=1;SPV=0.066667;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:6,3:5,1 +chr5 101547616 . GTA G 0 PASS DP=25;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:6,3:2,2 +chr5 102779886 . C CATAT 0 PASS DP=26;GPV=1;SPV=0.014907;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:5,4:2,1 +chr5 103370179 . C CTATA 0 PASS DP=50;GPV=1;SPV=0.0095459;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:2,11:2,5:0,6 +chr5 103820598 . C CA 0 PASS DP=45;GPV=1;SPV=0.034961;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:18,11:12,9:6,2 +chr5 104223378 . T C 0 PASS DP=26;GPV=1;SPV=0.080745;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:5,2:4,2 +chr5 104667584 . C G 0 PASS DP=40;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:9,4:8,1:1,3 +chr5 105902354 . G GT 0 PASS DP=57;GPV=1;SPV=0.0048071;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,8:10,4:12,4 +chr5 106555754 . A T 0 PASS DP=19;GPV=1;SPV=0.21053;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:4,1:3,1 +chr5 107763997 . T G 0 PASS DP=71;GPV=1;SPV=1.4899e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:18,20:9,8:9,12 +chr5 113187754 . CAA C 0 PASS DP=33;GPV=1;SPV=0.037681;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,10:5,9:2,1 +chr5 113346636 . A C 0 PASS DP=74;GPV=1;SPV=0.069354;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,5:13,1:11,4 +chr5 113735616 . C T 0 PASS DP=72;GPV=1;SPV=0.039775;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:14,3:15,1 +chr5 113786209 . CT C 0 PASS DP=26;GPV=1;SPV=0.0071396;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,4:4,3 +chr5 114504168 . T C 0 PASS DP=85;GPV=1;SPV=0.049835;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:36,11:16,4:20,7 +chr5 115793449 . CGTGT C 0 PASS DP=48;GPV=1;SPV=0.0062699;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,11:2,7:8,4 +chr5 116327605 . T C 0 PASS DP=45;GPV=1;SPV=0.14672;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:17,3:10,1:7,2 +chr5 116883195 . G GA 0 PASS DP=23;GPV=1;SPV=0.42424;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,2:5,1:1,1 +chr5 117149034 . C A 0 PASS DP=74;GPV=1;SPV=0.00020455;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:26,11:13,2:13,9 +chr5 118934272 . T TA 0 PASS DP=27;GPV=1;SPV=0.13025;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:7,4:6,1 +chr5 120516423 . CA C 0 PASS DP=27;GPV=1;SPV=0.094203;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:7,2:3,2 +chr5 121294570 . TG T 0 PASS DP=58;GPV=1;SPV=0.16084;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,5:9,2:13,3 +chr5 121496862 . T TAC 0 PASS DP=73;GPV=1;SPV=0.0039721;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,12:17,10:9,2 +chr5 122362993 . A AT 0 PASS DP=56;GPV=1;SPV=0.0026611;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:22,9:14,4:8,5 +chr5 122783083 . C T 0 PASS DP=67;GPV=1;SPV=0.00090199;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:12,4:12,5 +chr5 125728450 . G T 0 PASS DP=74;GPV=1;SPV=0.0059787;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:27,6:12,4:15,2 +chr5 128539884 . T TCA 0 PASS DP=20;GPV=1;SPV=0.1;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:11:0,2:0,2:0,0 +chr5 128568884 . C CT 0 PASS DP=26;GPV=1;SPV=0.0023815;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,9:1,8:2,1 +chr5 128760745 . C CA 0 PASS DP=55;GPV=1;SPV=0.017137;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:15,9:6,5 +chr5 128863776 . A G 0 PASS DP=57;GPV=1;SPV=0.024972;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,1:15,5 +chr5 131179474 . T C 0 PASS DP=46;GPV=1;SPV=0.3;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:7,2:4,1:3,1 +chr5 132433778 . CT C 0 PASS DP=40;GPV=1;SPV=0.003085;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:11,8:3,2 +chr5 135530280 . G A 0 PASS DP=99;GPV=1;SPV=3.256e-08;SS=2;SSC=74;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:30,23:13,16:17,7 +chr5 136936478 . T TTA 0 PASS DP=42;GPV=1;SPV=0.034629;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,3:9,1 +chr5 137951209 . C CAA 0 PASS DP=40;GPV=1;SPV=0.023812;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,7:10,6:6,1 +chr5 138309734 . G T 0 PASS DP=52;GPV=1;SPV=0.13283;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:14,3:14,1 +chr5 138693351 . CT C 0 PASS DP=43;GPV=1;SPV=0.044156;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:2,1:17,4 +chr5 139068673 . AAG A 0 PASS DP=39;GPV=1;SPV=0.010266;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:6,5:7,6 +chr5 140960717 . T G 0 PASS DP=69;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:22,4:11,2:11,2 +chr5 141271696 . G A 0 PASS DP=87;GPV=1;SPV=1.9441e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:31,15:16,9:15,6 +chr5 141315300 . C A 0 PASS DP=73;GPV=1;SPV=0.0066622;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:15,6:6,3:9,3 +chr5 141455860 . ATTAT A 0 PASS DP=69;GPV=1;SPV=0.0051599;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,12:11,10:10,2 +chr5 142608583 . TACAC T 0 PASS DP=25;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:3,3:0,1:3,2 +chr5 144047478 . G A 0 PASS DP=89;GPV=1;SPV=2e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:24,17:11,13:13,4 +chr5 145421522 . G C 0 PASS DP=55;GPV=1;SPV=0.11998;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:13,1:16,3 +chr5 146086024 . CT C 0 PASS DP=42;GPV=1;SPV=0.16752;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:18,3:7,2 +chr5 146131496 . T G 0 PASS DP=72;GPV=1;SPV=0.029826;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:17,9:11,3 +chr5 146438006 . A T 0 PASS DP=21;GPV=1;SPV=0.068627;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:2,2:4,2 +chr5 146708356 . C CA 0 PASS DP=54;GPV=1;SPV=0.011315;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,10:11,6:5,4 +chr5 146875502 . T C 0 PASS DP=74;GPV=1;SPV=1.6503e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:19,19:6,8:13,11 +chr5 147949033 . GATGTAAATATATATACATTATATATACA G 0 PASS DP=73;GPV=1;SPV=0.0065453;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:16,2:13,8 +chr5 148979723 . G A 0 PASS DP=84;GPV=1;SPV=1.0446e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:10,11:13,4 +chr5 149900375 . G GTATATATATA 0 PASS DP=23;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:6,5:3,2:3,3 +chr5 149920938 . G A 0 PASS DP=45;GPV=1;SPV=0.022541;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:12,3:2,1 +chr5 152298973 . G A 0 PASS DP=76;GPV=1;SPV=0.00040366;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,8:16,3 +chr5 154219834 . T TCACACACACACACACA 0 PASS DP=42;GPV=1;SPV=0.056428;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:12,2:9,4 +chr5 156239399 . C CAAAA 0 PASS DP=30;GPV=1;SPV=0.057692;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:5,5:2,4:3,1 +chr5 157111969 . T A 0 PASS DP=69;GPV=1;SPV=0.2381;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:3,3:0,2:3,1 +chr5 157182105 . A G 0 PASS DP=88;GPV=1;SPV=1.799e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:16,8:12,9 +chr5 157219113 . C CT 0 PASS DP=41;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,7:9,5:6,2 +chr5 157476166 . C T 0 PASS DP=80;GPV=1;SPV=8.2498e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:22,16:14,9:8,7 +chr5 158956754 . C CT 0 PASS DP=34;GPV=1;SPV=0.042724;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:9,5:2,1 +chr5 159227875 . CTTCTTTCTTTCT C 0 PASS DP=49;GPV=1;SPV=0.030593;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:1,1:18,7 +chr5 161336814 . C CAA 0 PASS DP=72;GPV=1;SPV=0.0013479;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,11:12,8:9,3 +chr5 161509760 . C T 0 PASS DP=72;GPV=1;SPV=1.1149e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:21,19:11,9:10,10 +chr5 161829603 . AAAAAAAACAAAAAAAAAAAAAC A 0 PASS DP=51;GPV=1;SPV=0.048922;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,5:8,4:12,1 +chr5 164130085 . C CT 0 PASS DP=23;GPV=1;SPV=0.010394;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,9:1,6:3,3 +chr5 164995450 . T C 0 PASS DP=55;GPV=1;SPV=0.042605;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:8,5:13,4 +chr5 165021986 . AATAT A 0 PASS DP=30;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:10,4:3,1 +chr5 166028483 . CT C 0 PASS DP=58;GPV=1;SPV=0.0014035;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:6,9:18,3 +chr5 167872316 . A T 0 PASS DP=29;GPV=1;SPV=0.1;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:17:0,2:0,1:0,1 +chr5 168703226 . T TTG 0 PASS DP=33;GPV=1;SPV=0.085095;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,4:7,2:7,2 +chr5 168714743 . G A 0 PASS DP=87;GPV=1;SPV=2.2297e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:12,9:16,8 +chr5 169137303 . CAT C 0 PASS DP=26;GPV=1;SPV=0.14286;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,2:4,1:0,1 +chr5 169189527 . GATATATATATATAT G 0 PASS DP=33;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,4:8,3:3,1 +chr5 171562612 . T TATATAA 0 PASS DP=36;GPV=1;SPV=0.01393;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:6,3:7,3 +chr5 171562655 . T A 0 PASS DP=25;GPV=1;SPV=0.0047113;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:4,8:1,3:3,5 +chr5 171690066 . C CATAG 0 PASS DP=68;GPV=1;SPV=0.05944;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:30,5:16,2:14,3 +chr5 172525610 . C T 0 PASS DP=84;GPV=1;SPV=1.2257e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,23:17,10:8,13 +chr5 172804549 . C CA 0 PASS DP=32;GPV=1;SPV=0.16126;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:13,5:8,4:5,1 +chr5 174722840 . G GT 0 PASS DP=76;GPV=1;SPV=0.00019233;SS=2;SSC=37;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:15,8:10,2 +chr5 175386375 . G A 0 PASS DP=107;GPV=1;SPV=8.6921e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:32,24:19,8:13,16 +chr5 175510173 . A G 0 PASS DP=76;GPV=1;SPV=0.0049761;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:35,9:22,5:13,4 +chr5 176014838 . C T 0 PASS DP=39;GPV=1;SPV=0.088935;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:1,0:17,4 +chr5 177499487 . CA C 0 PASS DP=51;GPV=1;SPV=0.01217;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:12,14:6,10:6,4 +chr5 177872471 . A G 0 PASS DP=79;GPV=1;SPV=0.033452;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:16,2:15,9 +chr5 177874892 . T C 0 PASS DP=81;GPV=1;SPV=0.0050863;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:17,1:15,9 +chr5 177967786 . T C 0 PASS DP=25;GPV=1;SPV=0.056522;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:1,1:9,4 +chr5 178041678 . G T 0 PASS DP=85;GPV=1;SPV=2.5449e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:15,9:9,5 +chr5 178821674 . C CTTTT 0 PASS DP=54;GPV=1;SPV=0.010536;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:19,13:7,6:12,7 +chr5 179441206 . G A 0 PASS DP=85;GPV=1;SPV=0.0012784;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:20,3:11,5 +chr6 310904 . T A 0 PASS DP=141;GPV=1;SPV=1.9531e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:52,21:25,13:27,8 +chr6 1905414 . G A 0 PASS DP=56;GPV=1;SPV=0.01696;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,6:1,4:10,2 +chr6 2920154 . CT C 0 PASS DP=34;GPV=1;SPV=0.0045877;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,7:3,6:2,1 +chr6 3234823 . G GTTCT 0 PASS DP=59;GPV=1;SPV=0.044773;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,5:8,3:7,2 +chr6 3925951 . A G 0 PASS DP=76;GPV=1;SPV=0.039892;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:24,9:15,2:9,7 +chr6 4432917 . C T 0 PASS DP=22;GPV=1;SPV=0.039683;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,0:0,4 +chr6 5444515 . G A 0 PASS DP=27;GPV=1;SPV=0.044118;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:2,2:1,1:1,1 +chr6 5897460 . C G 0 PASS DP=39;GPV=1;SPV=0.0019985;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:6,8:3,1:3,7 +chr6 6304860 . CA C 0 PASS DP=43;GPV=1;SPV=0.00022182;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:10,16:7,13:3,3 +chr6 8595870 . A T 0 PASS DP=73;GPV=1;SPV=0.018687;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:6,3:4,1:2,2 +chr6 8853701 . G C 0 PASS DP=26;GPV=1;SPV=0.0044376;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:2,6:1,5:1,1 +chr6 9013037 . CA C 0 PASS DP=23;GPV=1;SPV=0.0035042;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:12:3,9:0,2:3,7 +chr6 10047852 . C T 0 PASS DP=58;GPV=1;SPV=0.004794;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:3,5:0,3:3,2 +chr6 10474352 . A C 0 PASS DP=64;GPV=1;SPV=0.00079857;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,6:2,2:2,4 +chr6 14582704 . A C 0 PASS DP=63;GPV=1;SPV=0.0026065;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:11,2:8,4 +chr6 15415603 . T C 0 PASS DP=30;GPV=1;SPV=0.040038;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:2,4:7,2 +chr6 18670753 . T TCCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTC 0 PASS DP=22;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:0,4:0,0:0,4 +chr6 19182361 . A G 0 PASS DP=60;GPV=1;SPV=3.2061e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:7,15:3,7:4,8 +chr6 21784591 . ATATATAT A 0 PASS DP=36;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:3,2:2,1:1,1 +chr6 26453583 . T A 0 PASS DP=68;GPV=1;SPV=0.060606;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:2,3:1,2:1,1 +chr6 26884833 . G A 0 PASS DP=50;GPV=1;SPV=0.00090694;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:3,4:4,3 +chr6 26884873 . T TCCC 0 PASS DP=53;GPV=1;SPV=0.019122;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,1:4,3 +chr6 27208925 . C CA 0 PASS DP=48;GPV=1;SPV=0.005895;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:2,4:6,1 +chr6 27676094 . G GT 0 PASS DP=38;GPV=1;SPV=0.006706;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:6,2:2,2 +chr6 27959755 . T C 0 PASS DP=51;GPV=1;SPV=4.0518e-10;SS=2;SSC=93;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:21:4,17:3,8:1,9 +chr6 29980519 . A T 0 PASS DP=68;GPV=1;SPV=0.1;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,3:1,1:4,2 +chr6 32067094 . AATG A 0 PASS DP=66;GPV=1;SPV=0.095186;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:24,2:13,3 +chr6 32242530 . C T 0 PASS DP=55;GPV=1;SPV=0.028;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:10,2:9,2 +chr6 32415088 . TA T 0 PASS DP=100;GPV=1;SPV=0.03684;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:48,8:23,1:25,7 +chr6 33526158 . TA T 0 PASS DP=66;GPV=1;SPV=0.10242;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:27,3:7,1 +chr6 35802004 . C T 0 PASS DP=74;GPV=1;SPV=2.2053e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:15,6:10,9 +chr6 37402786 . T G 0 PASS DP=79;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:3,3:0,2:3,1 +chr6 38289261 . C A 0 PASS DP=84;GPV=1;SPV=3.6033e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:34,19:18,7:16,12 +chr6 40113950 . T G 0 PASS DP=61;GPV=1;SPV=0.12713;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:23,3:15,3 +chr6 40113951 . G A 0 PASS DP=62;GPV=1;SPV=0.11483;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:24,3:14,3 +chr6 42716612 . G GT 0 PASS DP=30;GPV=1;SPV=0.14143;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:10,3:5,1 +chr6 48953532 . G A 0 PASS DP=32;GPV=1;SPV=0.0032221;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:4,4:2,3 +chr6 50560396 . CTT C 0 PASS DP=35;GPV=1;SPV=0.024163;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,7:6,6:4,1 +chr6 51058706 . AT A 0 PASS DP=39;GPV=1;SPV=0.01188;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:14,6:4,2:10,4 +chr6 51330108 . C G 0 PASS DP=62;GPV=1;SPV=0.0023062;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:5,6:14,3 +chr6 52838757 . A G 0 PASS DP=96;GPV=1;SPV=9.5945e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:23,23:10,13:13,10 +chr6 53226342 . TTTTATA T 0 PASS DP=27;GPV=1;SPV=0.22398;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:3,3:10,1 +chr6 54142918 . C CA 0 PASS DP=81;GPV=1;SPV=0.0034605;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,9:10,5:18,4 +chr6 54533007 . C A 0 PASS DP=69;GPV=1;SPV=9.9748e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,21:11,6:9,15 +chr6 55043370 . T TG 0 PASS DP=72;GPV=1;SPV=0.018314;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:35,7:13,2:22,5 +chr6 55220155 . A G 0 PASS DP=87;GPV=1;SPV=5.1525e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:15,10:13,11 +chr6 55567296 . C T 0 PASS DP=86;GPV=1;SPV=1.3189e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:30,23:13,9:17,14 +chr6 56872833 . T C 0 PASS DP=17;GPV=1;SPV=0.12353;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr6 57371143 . C T 0 PASS DP=47;GPV=1;SPV=0.070922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:3,3:18,1 +chr6 57439404 . GTTT G 0 PASS DP=24;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,4:6,3:3,1 +chr6 57722372 . A T 0 PASS DP=89;GPV=1;SPV=0.01724;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:47,8:32,6:15,2 +chr6 58233071 . CT C 0 PASS DP=34;GPV=1;SPV=0.040348;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:6,2:9,4 +chr6 58450569 . G A 0 PASS DP=34;GPV=1;SPV=0.22913;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:20,4:0,0 +chr6 58555199 . T A 0 PASS DP=183;GPV=1;SPV=0.03374;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:80,12:27,2:53,10 +chr6 59563748 . G A 0 PASS DP=464;GPV=1;SPV=0.013039;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:255:229,26:51,9:178,17 +chr6 59623233 . C A 0 PASS DP=26;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr6 59781933 . A G 0 PASS DP=69;GPV=1;SPV=0.053645;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:28,2:2,2 +chr6 60287954 . G A 0 PASS DP=32;GPV=1;SPV=0.062937;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:4,5:2,1:2,4 +chr6 61245245 . G A 0 PASS DP=79;GPV=1;SPV=0.0017223;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:15,5:19,5 +chr6 63242386 . C CA 0 PASS DP=45;GPV=1;SPV=0.022078;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:18,6:11,4:7,2 +chr6 65492336 . C G 0 PASS DP=76;GPV=1;SPV=0.011201;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:31,9:19,5:12,4 +chr6 65730800 . T C 0 PASS DP=71;GPV=1;SPV=0.053889;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:16,2:15,2 +chr6 65737373 . T C 0 PASS DP=51;GPV=1;SPV=0.035086;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,6:11,3:11,3 +chr6 65737415 . T TATAC 0 PASS DP=58;GPV=1;SPV=0.091036;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,4:12,2:16,2 +chr6 67213948 . GATAT G 0 PASS DP=60;GPV=1;SPV=0.060034;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,4:9,2:15,2 +chr6 68471407 . T A 0 PASS DP=61;GPV=1;SPV=0.065934;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:2,2:2,1:0,1 +chr6 70113842 . CTTT C 0 PASS DP=27;GPV=1;SPV=0.066203;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:8,5:3,2 +chr6 70831938 . A T 0 PASS DP=80;GPV=1;SPV=0.00070294;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:21,4:8,5 +chr6 72549326 . A G 0 PASS DP=77;GPV=1;SPV=0.0084228;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:36,8:18,4:18,4 +chr6 72941373 . TTTCCTCC T 0 PASS DP=33;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:4,2:0,0:4,2 +chr6 73034859 . T A 0 PASS DP=51;GPV=1;SPV=0.10966;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:15,3:11,1 +chr6 73573302 . G A 0 PASS DP=85;GPV=1;SPV=1.6753e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,18:9,11:14,7 +chr6 75046689 . A C 0 PASS DP=43;GPV=1;SPV=0.38182;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:5,2:2,1:3,1 +chr6 76557631 . A T 0 PASS DP=78;GPV=1;SPV=0.051748;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,1:18,3 +chr6 77485738 . ATC A 0 PASS DP=49;GPV=1;SPV=0.07056;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:12,1:10,3 +chr6 78462066 . T A 0 PASS DP=74;GPV=1;SPV=3.0868e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:21,11:15,8:6,3 +chr6 80055046 . G A 0 PASS DP=73;GPV=1;SPV=1.6056e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:12,10:11,12 +chr6 84111838 . C T 0 PASS DP=79;GPV=1;SPV=2.8323e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:15,8:12,6 +chr6 84553785 . G A 0 PASS DP=90;GPV=1;SPV=6.2178e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:25,20:13,12:12,8 +chr6 85139497 . TA T 0 PASS DP=100;GPV=1;SPV=0.012113;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:46,10:24,6:22,4 +chr6 86079873 . TG T 0 PASS DP=24;GPV=1;SPV=0.067288;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr6 86084768 . A T 0 PASS DP=84;GPV=1;SPV=0.00022479;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:18,10:16,3 +chr6 86919045 . A G 0 PASS DP=76;GPV=1;SPV=1.407e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:9,5:15,9 +chr6 89898209 . T C 0 PASS DP=46;GPV=1;SPV=0.25455;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:5,4:0,2:5,2 +chr6 89898210 . C CT 0 PASS DP=48;GPV=1;SPV=0.25455;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:5,4:0,2:5,2 +chr6 92600290 . A T 0 PASS DP=88;GPV=1;SPV=4.4665e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:12,10:17,6 +chr6 92865613 . G A 0 PASS DP=87;GPV=1;SPV=0.006558;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:20,4:17,3 +chr6 93868128 . C A 0 PASS DP=58;GPV=1;SPV=1.0101e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:16,15:11,6:5,9 +chr6 94020487 . C CTT 0 PASS DP=20;GPV=1;SPV=0.014884;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:3,7:1,5:2,2 +chr6 94693792 . C T 0 PASS DP=83;GPV=1;SPV=0.029299;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:17,3:20,2 +chr6 94877715 . T C 0 PASS DP=80;GPV=1;SPV=6.7628e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:27,17:19,6:8,11 +chr6 95761800 . G A 0 PASS DP=80;GPV=1;SPV=0.057784;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:16,3:20,1 +chr6 96014087 . G A 0 PASS DP=96;GPV=1;SPV=1.4866e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:34,20:20,11:14,9 +chr6 96606824 . T C 0 PASS DP=69;GPV=1;SPV=0.0018869;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:23,7:10,3:13,4 +chr6 102982459 . C T 0 PASS DP=88;GPV=1;SPV=0.0014491;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:38,10:15,5:23,5 +chr6 103661442 . G A 0 PASS DP=63;GPV=1;SPV=0.0004646;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:23,11:9,8:14,3 +chr6 104029816 . A AT 0 PASS DP=90;GPV=1;SPV=3.0489e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:17,5:14,13 +chr6 105100608 . G A 0 PASS DP=64;GPV=1;SPV=0.015574;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:9,2:11,9 +chr6 109266216 . C A 0 PASS DP=69;GPV=1;SPV=4.8252e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:21,17:11,9:10,8 +chr6 111552074 . TCTGTAAGATAACACACCTGCTCGGTGCC T 0 PASS DP=98;GPV=1;SPV=9.7235e-06;SS=2;SSC=50;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:29,12:15,9:14,3 +chr6 115737485 . A G 0 PASS DP=82;GPV=1;SPV=0.016865;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:28,10:19,9:9,1 +chr6 115845939 . C T 0 PASS DP=97;GPV=1;SPV=1.1232e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:17,10:14,7 +chr6 116865987 . C T 0 PASS DP=44;GPV=1;SPV=0.14763;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,4:9,2:13,2 +chr6 117043420 . A T 0 PASS DP=95;GPV=1;SPV=4.0601e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:37,15:21,9:16,6 +chr6 117204895 . C T 0 PASS DP=96;GPV=1;SPV=2.509e-08;SS=2;SSC=76;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:11,8:14,11 +chr6 117327934 . C T 0 PASS DP=77;GPV=1;SPV=3.406e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:7,8:17,4 +chr6 120492825 . G GT 0 PASS DP=33;GPV=1;SPV=0.028986;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:8,7:6,5:2,2 +chr6 122939368 . T A 0 PASS DP=61;GPV=1;SPV=5.5438e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,12:2,5:12,7 +chr6 125115312 . G T 0 PASS DP=84;GPV=1;SPV=4.2777e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:27,23:11,5:16,18 +chr6 125388817 . G A 0 PASS DP=42;GPV=1;SPV=0.037585;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:9,6:8,3 +chr6 127107190 . G A 0 PASS DP=83;GPV=1;SPV=0.00026518;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:18,7:13,4 +chr6 127400962 . T C 0 PASS DP=39;GPV=1;SPV=0.11425;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:12,2:9,3 +chr6 128108069 . A AAC 0 PASS DP=61;GPV=1;SPV=0.041933;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,6:12,3:9,3 +chr6 128995167 . A T 0 PASS DP=91;GPV=1;SPV=7.3375e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:15,7:14,7 +chr6 129256765 . T A 0 PASS DP=29;GPV=1;SPV=0.052107;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,5:7,4:5,1 +chr6 129718386 . T C 0 PASS DP=32;GPV=1;SPV=0.30847;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:16,2:8,1:8,1 +chr6 131887554 . A G 0 PASS DP=38;GPV=1;SPV=0.065637;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:3,2:13,2 +chr6 132188514 . CA C 0 PASS DP=38;GPV=1;SPV=0.0079864;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:8,6:1,1 +chr6 132812197 . CAA C 0 PASS DP=44;GPV=1;SPV=0.010225;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:7,9:6,2 +chr6 135134361 . C G 0 PASS DP=100;GPV=1;SPV=7.7318e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:21,11:12,3 +chr6 137563806 . T TAAA 0 PASS DP=37;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:19,3:2,1 +chr6 137869337 . A AGATG 0 PASS DP=99;GPV=1;SPV=0.016315;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:71:47,19:29,10:18,9 +chr6 138793970 . C CA 0 PASS DP=47;GPV=1;SPV=0.0038641;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:9,10:4,2 +chr6 139193824 . A T 0 PASS DP=32;GPV=1;SPV=0.13077;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:9,1:8,4 +chr6 140483649 . G T 0 PASS DP=90;GPV=1;SPV=3.9692e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:33,20:18,10:15,10 +chr6 140605492 . A T 0 PASS DP=49;GPV=1;SPV=0.19369;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:10,5:5,4:5,1 +chr6 141678628 . T TG 0 PASS DP=38;GPV=1;SPV=0.067038;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:18,5:10,1:8,4 +chr6 143935212 . A G 0 PASS DP=75;GPV=1;SPV=0.00010084;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:29,15:14,8:15,7 +chr6 145235631 . T A 0 PASS DP=19;GPV=1;SPV=0.004662;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:0,7:0,5:0,2 +chr6 145276229 . AT A 0 PASS DP=49;GPV=1;SPV=0.026073;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:12,5:9,3:3,2 +chr6 147579454 . ATT A 0 PASS DP=40;GPV=1;SPV=0.044075;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,7:9,3:6,4 +chr6 147797074 . A C 0 PASS DP=27;GPV=1;SPV=0.054106;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:6,3:5,2 +chr6 148504588 . C T 0 PASS DP=92;GPV=1;SPV=7.4436e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,5:17,9 +chr6 149234864 . G GA 0 PASS DP=48;GPV=1;SPV=0.034441;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,8:12,7:2,1 +chr6 150582652 . C CTGTGTGTG 0 PASS DP=28;GPV=1;SPV=0.01623;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,9:3,6:3,3 +chr6 152988793 . G A 0 PASS DP=16;GPV=1;SPV=0.23333;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,1:6,1 +chr6 153664278 . G A 0 PASS DP=80;GPV=1;SPV=9.559e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:15,8:11,7 +chr6 153851624 . T G 0 PASS DP=40;GPV=1;SPV=0.015475;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:6,4:5,5 +chr6 154331369 . AG A 0 PASS DP=67;GPV=1;SPV=0.052565;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:19,3:17,3 +chr6 154525428 . CATATAT C 0 PASS DP=42;GPV=1;SPV=0.18293;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:3,2:21,2 +chr6 154721214 . C CT 0 PASS DP=39;GPV=1;SPV=0.0039984;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:6,7:5,3 +chr6 154955391 . C CA 0 PASS DP=43;GPV=1;SPV=0.14395;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,4:14,3:6,1 +chr6 155094546 . C CT 0 PASS DP=28;GPV=1;SPV=0.32712;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:7,3:3,1 +chr6 156440895 . G GAAA 0 PASS DP=57;GPV=1;SPV=0.051834;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:20,1:4,3 +chr6 157060630 . CTT C 0 PASS DP=28;GPV=1;SPV=0.00078745;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:3,11:0,7:3,4 +chr6 158020219 . C T 0 PASS DP=44;GPV=1;SPV=0.031408;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:6,3:9,1 +chr6 158380894 . C CAAAAAAA 0 PASS DP=41;GPV=1;SPV=0.027218;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,4:6,3:2,1 +chr6 161516848 . G A 0 PASS DP=20;GPV=1;SPV=0.23684;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:8,2:3,1:5,1 +chr6 162840075 . A G 0 PASS DP=39;GPV=1;SPV=0.027999;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:6,1:8,7 +chr6 163269971 . G GA 0 PASS DP=43;GPV=1;SPV=0.11627;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,4:20,4:0,0 +chr6 164431026 . C T 0 PASS DP=83;GPV=1;SPV=0.0044903;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:33,7:12,3:21,4 +chr6 164931741 . A G 0 PASS DP=29;GPV=1;SPV=0.04741;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,8:8,6:5,2 +chr6 164998919 . G A 0 PASS DP=76;GPV=1;SPV=0.00019233;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:11,4:14,6 +chr6 165128078 . C T 0 PASS DP=52;GPV=1;SPV=0.01188;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:14,6:12,3:2,3 +chr6 166021090 . A T 0 PASS DP=43;GPV=1;SPV=0.16591;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:11,3:13,1 +chr6 167169069 . A G 0 PASS DP=86;GPV=1;SPV=0.039749;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:12,8:21,4 +chr6 168058269 . CA C 0 PASS DP=46;GPV=1;SPV=0.077519;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:6,1:15,3 +chr6 169006874 . A T 0 PASS DP=77;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:4,3:3,2:1,1 +chr6 169222817 . GA G 0 PASS DP=52;GPV=1;SPV=0.089245;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:10,5:7,4:3,1 +chr6 170220841 . G GAA 0 PASS DP=39;GPV=1;SPV=0.013906;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:11,9:2,2 +chr6 170466290 . C G 0 PASS DP=45;GPV=1;SPV=0.1021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:23,5:7,3:16,2 +chr7 125989 . C CT 0 PASS DP=33;GPV=1;SPV=0.091949;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:8,5:3,1 +chr7 742841 . A C 0 PASS DP=51;GPV=1;SPV=0.077327;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,5:14,2:7,3 +chr7 900880 . CGAA C 0 PASS DP=110;GPV=1;SPV=0.012058;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:48,6:20,2:28,4 +chr7 1784983 . T TTTCA 0 PASS DP=58;GPV=1;SPV=0.16556;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,4:21,3:10,1 +chr7 1785213 . CGTTCTTT C 0 PASS DP=45;GPV=1;SPV=0.043486;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:10,1:10,4 +chr7 1786165 . T TC 0 PASS DP=53;GPV=1;SPV=0.027438;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:6,5:1,4:5,1 +chr7 2283028 . G A 0 PASS DP=60;GPV=1;SPV=0.032677;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:31,7:19,2:12,5 +chr7 2365625 . G A 0 PASS DP=67;GPV=1;SPV=0.0062705;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:27,11:7,5:20,6 +chr7 2499632 . C T 0 PASS DP=105;GPV=1;SPV=0.0024716;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:52,11:23,5:29,6 +chr7 2708118 . C T 0 PASS DP=86;GPV=1;SPV=8.388e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:32,13:16,4:16,9 +chr7 3700286 . A C 0 PASS DP=84;GPV=1;SPV=0.00012616;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:8,5:19,5 +chr7 4283561 . T TA 0 PASS DP=56;GPV=1;SPV=0.030925;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,5:10,4:6,1 +chr7 4945185 . T TTTCTTCTTC 0 PASS DP=30;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,4:2,3:11,1 +chr7 5242710 . A G 0 PASS DP=52;GPV=1;SPV=0.087731;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:18,3:7,1 +chr7 6207086 . C CT 0 PASS DP=23;GPV=1;SPV=0.055901;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,2:3,2 +chr7 6641248 . G A 0 PASS DP=96;GPV=1;SPV=4.4921e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:19,5:20,11 +chr7 6885994 . T G 0 PASS DP=17;GPV=1;SPV=0.052941;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:5,4:1,3:4,1 +chr7 7723348 . C T 0 PASS DP=98;GPV=1;SPV=3.5101e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:31,19:11,9:20,10 +chr7 7784756 . CT C 0 PASS DP=30;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:6,7:3,5:3,2 +chr7 7964089 . C T 0 PASS DP=83;GPV=1;SPV=5.1287e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:15,7:12,9 +chr7 8339959 . C CCT 0 PASS DP=21;GPV=1;SPV=0.063246;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,5:1,3:7,2 +chr7 8995723 . C CAA 0 PASS DP=38;GPV=1;SPV=0.046146;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:9,6:8,5:1,1 +chr7 9154860 . T TA 0 PASS DP=60;GPV=1;SPV=0.0026989;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:10,4:7,4 +chr7 9307186 . C T 0 PASS DP=58;GPV=1;SPV=0.33333;SS=2;SSC=4;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:4,2:0,0:4,2 +chr7 9522092 . C CA 0 PASS DP=54;GPV=1;SPV=0.023032;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:15,8:3,1 +chr7 10335426 . A G 0 PASS DP=89;GPV=1;SPV=6.8006e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:26,22:15,12:11,10 +chr7 11076567 . C CTT 0 PASS DP=42;GPV=1;SPV=0.0036151;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:10,7:9,6:1,1 +chr7 11917838 . T G 0 PASS DP=69;GPV=1;SPV=5.3877e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:25,16:14,9:11,7 +chr7 12276954 . A G 0 PASS DP=94;GPV=1;SPV=1.153e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:14,11:13,8 +chr7 14260855 . C T 0 PASS DP=99;GPV=1;SPV=0.00029634;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:39,11:20,6:19,5 +chr7 14723024 . C T 0 PASS DP=65;GPV=1;SPV=0.077337;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:14,2:17,2 +chr7 16731927 . A AT 0 PASS DP=84;GPV=1;SPV=0.03699;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,7:6,6:14,1 +chr7 18098177 . T A 0 PASS DP=77;GPV=1;SPV=0.0027963;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,7:14,2:14,5 +chr7 19219807 . A T 0 PASS DP=41;GPV=1;SPV=0.10365;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,5:5,3:13,2 +chr7 19299685 . C G 0 PASS DP=85;GPV=1;SPV=0.0033096;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:38,9:15,5:23,4 +chr7 21828760 . G GT 0 PASS DP=49;GPV=1;SPV=0.0027946;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,9:9,6:9,3 +chr7 21956238 . A AT 0 PASS DP=26;GPV=1;SPV=0.12174;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,3:3,1 +chr7 21971073 . T A 0 PASS DP=49;GPV=1;SPV=0.067927;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,7:9,3:17,4 +chr7 23364547 . CA C 0 PASS DP=23;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:9,4:0,0 +chr7 24215811 . T A 0 PASS DP=35;GPV=1;SPV=0.13094;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,7:10,3:4,4 +chr7 24388530 . C CTTTTTTTTTTTT 0 PASS DP=36;GPV=1;SPV=0.069102;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:18,6:9,3:9,3 +chr7 24428043 . T C 0 PASS DP=65;GPV=1;SPV=0.010479;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:12,9:5,5:7,4 +chr7 25085914 . C CA 0 PASS DP=30;GPV=1;SPV=0.024176;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:6,3:2,1 +chr7 25749249 . T G 0 PASS DP=47;GPV=1;SPV=0.059574;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:14,3:6,1 +chr7 27613172 . TAA T 0 PASS DP=28;GPV=1;SPV=0.18132;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,5:4,3:3,2 +chr7 29538789 . C T 0 PASS DP=79;GPV=1;SPV=6.2994e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:29,14:18,6:11,8 +chr7 30056742 . AGTGT A 0 PASS DP=28;GPV=1;SPV=0.012749;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:7,6:2,5:5,1 +chr7 30126166 . T C 0 PASS DP=57;GPV=1;SPV=0.0012929;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:13,12:5,4:8,8 +chr7 30126168 . C CAGGCTTGTGTGAAGGCCCTGA 0 PASS DP=50;GPV=1;SPV=0.018715;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:7,2:9,7 +chr7 31859456 . A T 0 PASS DP=62;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:30:1,3:0,1:1,2 +chr7 32572431 . C T 0 PASS DP=72;GPV=1;SPV=0.071749;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:17,2:17,2 +chr7 34805479 . C CAA 0 PASS DP=40;GPV=1;SPV=0.0036984;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:7,7:3,1 +chr7 37270883 . A T 0 PASS DP=66;GPV=1;SPV=0.032477;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:10,6:3,3:7,3 +chr7 37292568 . G A 0 PASS DP=36;GPV=1;SPV=0.15033;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:5,2:14,2 +chr7 39071654 . AACACAC A 0 PASS DP=44;GPV=1;SPV=0.027751;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,5:7,3:2,2 +chr7 41793616 . A G 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:12,1:1,3 +chr7 41829126 . A AATTTCCCTTAGGC 0 PASS DP=61;GPV=1;SPV=0.00429;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:17,8:7,6 +chr7 43101336 . C T 0 PASS DP=17;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:1,4:0,0:1,4 +chr7 43710371 . A AAT 0 PASS DP=22;GPV=1;SPV=0.16725;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr7 43910382 . ATTT A 0 PASS DP=37;GPV=1;SPV=0.042555;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:7,2:7,6 +chr7 43974178 . T TC 0 PASS DP=75;GPV=1;SPV=0.049981;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,7:12,6:11,1 +chr7 44687091 . A AT 0 PASS DP=47;GPV=1;SPV=0.048875;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:15,8:4,4:11,4 +chr7 44914984 . G GTAAAATAAAATAAAATAAAA 0 PASS DP=61;GPV=1;SPV=0.046858;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,4:16,2 +chr7 45933631 . G GTGTGTATATATATATATA 0 PASS DP=26;GPV=1;SPV=0.025641;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,4:1,2:2,2 +chr7 46322435 . C CA 0 PASS DP=54;GPV=1;SPV=0.029113;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,10:12,7:6,3 +chr7 46494124 . CA C 0 PASS DP=46;GPV=1;SPV=0.0041535;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:9,8:8,7:1,1 +chr7 46854685 . AAG A 0 PASS DP=68;GPV=1;SPV=0.0054249;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,6:8,3:16,3 +chr7 48685289 . C T 0 PASS DP=92;GPV=1;SPV=1.2446e-06;SS=2;SSC=59;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:30,18:16,11:14,7 +chr7 48779323 . C T 0 PASS DP=71;GPV=1;SPV=0.0040452;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:15,5:12,2 +chr7 50125285 . CACAT C 0 PASS DP=40;GPV=1;SPV=0.23279;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:13,2:9,1 +chr7 50125311 . C T 0 PASS DP=37;GPV=1;SPV=0.22793;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:20,3:14,2:6,1 +chr7 52119708 . C G 0 PASS DP=71;GPV=1;SPV=0.096637;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:24,4:21,1:3,3 +chr7 52960966 . A G 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:3,1:3,1 +chr7 53352375 . C T 0 PASS DP=88;GPV=1;SPV=1.9877e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:29,30:17,16:12,14 +chr7 53511530 . C CT 0 PASS DP=80;GPV=1;SPV=3.6174e-05;SS=2;SSC=44;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,12:11,8:14,4 +chr7 53725863 . T C 0 PASS DP=93;GPV=1;SPV=1.6173e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:20,7:12,7 +chr7 54140025 . G A 0 PASS DP=92;GPV=1;SPV=7.4436e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:21,10:15,4 +chr7 54464390 . C A 0 PASS DP=72;GPV=1;SPV=2.6047e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:23,21:8,14:15,7 +chr7 55783389 . T C 0 PASS DP=67;GPV=1;SPV=0.0054024;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:16,7:8,5:8,2 +chr7 56127231 . C CA 0 PASS DP=56;GPV=1;SPV=0.0011989;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,10:4,7:3,3 +chr7 56461566 . T G 0 PASS DP=85;GPV=1;SPV=0.001598;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:32,8:25,4:7,4 +chr7 56638434 . C T 0 PASS DP=64;GPV=1;SPV=3.2896e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:7,13:11,4 +chr7 56836506 . T A 0 PASS DP=92;GPV=1;SPV=0.038534;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:37,8:21,4:16,4 +chr7 58080955 . G A 0 PASS DP=316;GPV=1;SPV=0.032754;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:181:158,23:92,16:66,7 +chr7 59230222 . C T 0 PASS DP=616;GPV=1;SPV=0.02511;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:343:302,41:188,22:114,19 +chr7 59570491 . G A 0 PASS DP=57;GPV=1;SPV=0.20823;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:29,3:6,1 +chr7 60036939 . T C 0 PASS DP=75;GPV=1;SPV=0.0067216;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:22,10:6,2 +chr7 60039753 . T C 0 PASS DP=55;GPV=1;SPV=0.021448;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:18,4:0,0 +chr7 60949959 . C T 0 PASS DP=216;GPV=1;SPV=0.0071561;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:117:98,19:63,14:35,5 +chr7 60955048 . G C 0 PASS DP=279;GPV=1;SPV=0.034864;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:138,16:56,6:82,10 +chr7 60996619 . TGA T 0 PASS DP=96;GPV=1;SPV=0.048603;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:53,6:24,2:29,4 +chr7 61385398 . TA T 0 PASS DP=55;GPV=1;SPV=0.13598;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:30,4:19,2:11,2 +chr7 61488604 . T C 0 PASS DP=81;GPV=1;SPV=0.021997;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:25,4:7,3 +chr7 61506551 . A T 0 PASS DP=89;GPV=1;SPV=0.021309;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:1,1:42,9 +chr7 61724133 . A G 0 PASS DP=72;GPV=1;SPV=0.045334;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:11,1:18,5 +chr7 61803165 . C A 0 PASS DP=65;GPV=1;SPV=0.022093;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:14,5:18,2 +chr7 62106160 . T C 0 PASS DP=30;GPV=1;SPV=0.054634;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:9,3:5,5 +chr7 62256928 . C T 0 PASS DP=139;GPV=1;SPV=0.039915;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:68,13:22,5:46,8 +chr7 62266780 . G T 0 PASS DP=106;GPV=1;SPV=1.7776e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:27,18:12,8:15,10 +chr7 62277206 . C G 0 PASS DP=132;GPV=1;SPV=0.012901;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:11,6:47,5 +chr7 63448596 . T A 0 PASS DP=20;GPV=1;SPV=0.18182;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,2:0,0:3,2 +chr7 63553934 . CT C 0 PASS DP=59;GPV=1;SPV=0.012389;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,10:10,8:10,2 +chr7 63598391 . G T 0 PASS DP=54;GPV=1;SPV=0.12939;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:24,3:5,1 +chr7 63632179 . T TA 0 PASS DP=106;GPV=1;SPV=0.029668;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:57:39,11:22,8:17,3 +chr7 63752221 . C T 0 PASS DP=56;GPV=1;SPV=0.11141;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:29,4:19,3:10,1 +chr7 63757713 . A C 0 PASS DP=195;GPV=1;SPV=0.0065609;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:105:92,13:38,7:54,6 +chr7 63944244 . T C 0 PASS DP=75;GPV=1;SPV=0.0010226;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:30,10:14,7:16,3 +chr7 64222086 . T TA 0 PASS DP=66;GPV=1;SPV=0.033688;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,5:10,3:19,2 +chr7 64666914 . AAGGTGGAAATTTTCTGGTCACGTAATCAGAGCTTAATTGGCAGTTCATGGTTGATTAAG A 0 PASS DP=46;GPV=1;SPV=0.023489;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,7:11,5:5,2 +chr7 65519244 . C T 0 PASS DP=72;GPV=1;SPV=0.03902;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:37,6:20,4:17,2 +chr7 65847313 . A T 0 PASS DP=28;GPV=1;SPV=0.0041408;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,8:5,4:3,4 +chr7 66096249 . C CA 0 PASS DP=72;GPV=1;SPV=0.00021148;SS=2;SSC=36;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,12:17,6:9,6 +chr7 66328888 . A C 0 PASS DP=20;GPV=1;SPV=0.073684;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:4,1:2,2 +chr7 66337299 . A AT 0 PASS DP=35;GPV=1;SPV=0.036146;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:13,11:11,7:2,4 +chr7 68320052 . TTATATAAAATGATATAATCATTA T 0 PASS DP=64;GPV=1;SPV=0.0061323;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:16,7:12,2 +chr7 68392265 . C CA 0 PASS DP=48;GPV=1;SPV=0.0027973;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,8:5,7:2,1 +chr7 68749044 . G A 0 PASS DP=65;GPV=1;SPV=0.0019458;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:27,10:11,6:16,4 +chr7 68799621 . CA C 0 PASS DP=40;GPV=1;SPV=0.047817;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:16,8:15,7:1,1 +chr7 68803172 . G A 0 PASS DP=68;GPV=1;SPV=0.00087424;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:26,10:13,7:13,3 +chr7 69092754 . C T 0 PASS DP=92;GPV=1;SPV=7.7788e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:29,18:14,9:15,9 +chr7 69459100 . A ATATG 0 PASS DP=22;GPV=1;SPV=0.030075;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:4,3:3,2 +chr7 69459102 . G A 0 PASS DP=19;GPV=1;SPV=0.029412;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:3,3:2,2 +chr7 70716636 . CAAAAA C 0 PASS DP=37;GPV=1;SPV=0.033806;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr7 71090756 . C CTT 0 PASS DP=32;GPV=1;SPV=0.12384;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:7,9:5,5:2,4 +chr7 71431210 . T C 0 PASS DP=34;GPV=1;SPV=0.018626;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:9,7:4,3:5,4 +chr7 71901426 . C CA 0 PASS DP=71;GPV=1;SPV=0.00029659;SS=2;SSC=35;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,9:5,4:8,5 +chr7 72620481 . A G 0 PASS DP=71;GPV=1;SPV=0.021372;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:29,5:16,3:13,2 +chr7 73836515 . C A 0 PASS DP=38;GPV=1;SPV=0.0018031;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:8,8:4,1 +chr7 75103559 . C T 0 PASS DP=92;GPV=1;SPV=0.048878;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:22,2:17,4 +chr7 75151114 . T C 0 PASS DP=78;GPV=1;SPV=0.025775;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,2:18,7 +chr7 75663980 . A ATG 0 PASS DP=26;GPV=1;SPV=0.2066;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,4:2,1:8,3 +chr7 75740366 . C CGTGTGTGTGT 0 PASS DP=48;GPV=1;SPV=0.00329;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:15,11:12,7:3,4 +chr7 76640861 . G A 0 PASS DP=43;GPV=1;SPV=0.018733;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,1:4,7 +chr7 76855720 . G A 0 PASS DP=81;GPV=1;SPV=2.8637e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:28,21:15,12:13,9 +chr7 77983435 . C CTCTCCCTT 0 PASS DP=23;GPV=1;SPV=0.33333;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:4,2:0,0:4,2 +chr7 80284488 . TATACAC T 0 PASS DP=22;GPV=1;SPV=0.083333;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:2,3:0,2:2,1 +chr7 87720542 . ATG A 0 PASS DP=59;GPV=1;SPV=0.0065837;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:8,5:13,9 +chr7 89430318 . G A 0 PASS DP=76;GPV=1;SPV=0.0001214;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:14,7:16,8 +chr7 91290943 . C CATATATATATAT 0 PASS DP=43;GPV=1;SPV=0.037765;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,6:7,5:13,1 +chr7 92125953 . C G 0 PASS DP=78;GPV=1;SPV=0.0019211;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:32,9:24,3:8,6 +chr7 92712882 . T G 0 PASS DP=83;GPV=1;SPV=0.037048;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:43,6:27,2:16,4 +chr7 94859942 . CTTTTTTTTTTTT C 0 PASS DP=34;GPV=1;SPV=0.019341;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,9:5,5:6,4 +chr7 96588397 . C CGAGAGA 0 PASS DP=53;GPV=1;SPV=0.10773;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,5:8,4:14,1 +chr7 97016257 . G A 0 PASS DP=42;GPV=1;SPV=0.13357;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:11,3:11,1 +chr7 98453806 . C CA 0 PASS DP=38;GPV=1;SPV=0.023342;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:15,6:10,5:5,1 +chr7 98558737 . A AT 0 PASS DP=34;GPV=1;SPV=0.054106;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:11,5:5,2:6,3 +chr7 98811329 . G A 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,3:7,1 +chr7 99122772 . A G 0 PASS DP=48;GPV=1;SPV=0.015549;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,18:6,4:12,14 +chr7 99181145 . CTCTCCGTCTGTG C 0 PASS DP=29;GPV=1;SPV=0.16319;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:9,3:6,1 +chr7 99209704 . A G 0 PASS DP=40;GPV=1;SPV=0.096892;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:11,2:8,2 +chr7 99909732 . T G 0 PASS DP=49;GPV=1;SPV=0.02798;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:11,5:7,2 +chr7 100001262 . CT C 0 PASS DP=24;GPV=1;SPV=0.037185;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:6,4:3,2 +chr7 100911939 . C CA 0 PASS DP=51;GPV=1;SPV=0.048243;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,7:16,6:4,1 +chr7 101070347 . C CAA 0 PASS DP=33;GPV=1;SPV=0.17436;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,4:8,3:6,1 +chr7 101329607 . A ATTT 0 PASS DP=32;GPV=1;SPV=0.072149;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:8,1:5,4 +chr7 101630135 . CA C 0 PASS DP=51;GPV=1;SPV=0.0086957;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:5,15:3,13:2,2 +chr7 101790096 . CAAA C 0 PASS DP=28;GPV=1;SPV=0.091659;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:8,4:5,2 +chr7 102345852 . T C 0 PASS DP=89;GPV=1;SPV=0.045941;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:44,5:21,1:23,4 +chr7 102776713 . A G 0 PASS DP=78;GPV=1;SPV=0.01162;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:30,8:13,3:17,5 +chr7 103063712 . C CT 0 PASS DP=23;GPV=1;SPV=0.026248;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,7:3,4:5,3 +chr7 103518350 . A T 0 PASS DP=44;GPV=1;SPV=0.076651;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:12,5:8,2:4,3 +chr7 104860178 . C A 0 PASS DP=74;GPV=1;SPV=0.03735;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:12,6:7,4:5,2 +chr7 107260075 . G GATATATATATATATATATATAT 0 PASS DP=36;GPV=1;SPV=0.092532;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:16,4:6,2:10,2 +chr7 108164196 . A G 0 PASS DP=33;GPV=1;SPV=0.083394;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:12,3:12,1:0,2 +chr7 108335434 . CTTT C 0 PASS DP=26;GPV=1;SPV=0.091304;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr7 108696762 . C T 0 PASS DP=90;GPV=1;SPV=0.007164;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:20,4:19,3 +chr7 109510329 . T TA 0 PASS DP=93;GPV=1;SPV=0.0012714;SS=2;SSC=28;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:20,5:20,5 +chr7 111031406 . G A 0 PASS DP=70;GPV=1;SPV=0.019517;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,11:8,2:16,9 +chr7 114043333 . ATATT A 0 PASS DP=25;GPV=1;SPV=0.028261;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:5,3:4,3 +chr7 115946417 . G T 0 PASS DP=71;GPV=1;SPV=0.065336;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:21,2:16,3 +chr7 116968289 . C T 0 PASS DP=18;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:9:1,3:0,0:1,3 +chr7 116968293 . C T 0 PASS DP=18;GPV=1;SPV=0.14286;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:1,2:0,0:1,2 +chr7 117027498 . T TAAAGTA 0 PASS DP=54;GPV=1;SPV=0.019211;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:9,1:8,4 +chr7 117027518 . G GTA 0 PASS DP=46;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,1:5,4 +chr7 117161593 . T TTC 0 PASS DP=51;GPV=1;SPV=0.002293;SS=2;SSC=26;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:17,9:4,5:13,4 +chr7 117368531 . A G 0 PASS DP=80;GPV=1;SPV=3.6779e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:30,16:15,8:15,8 +chr7 119352975 . A G 0 PASS DP=91;GPV=1;SPV=7.3373e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:34,13:19,5:15,8 +chr7 119470828 . G A 0 PASS DP=78;GPV=1;SPV=1.2626e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:9,5:13,7 +chr7 119563108 . C T 0 PASS DP=62;GPV=1;SPV=3.0044e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:11,13:1,5:10,8 +chr7 119683798 . A T 0 PASS DP=89;GPV=1;SPV=1.0223e-08;SS=2;SSC=79;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:9,8:14,14 +chr7 120832936 . A C 0 PASS DP=93;GPV=1;SPV=1.5865e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:31,18:18,9:13,9 +chr7 122817966 . G A 0 PASS DP=42;GPV=1;SPV=0.0010673;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:3,5:9,3 +chr7 124273969 . C T 0 PASS DP=107;GPV=1;SPV=6.8612e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:39,16:21,5:18,11 +chr7 125376962 . C T 0 PASS DP=90;GPV=1;SPV=2.9284e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:29,22:19,14:10,8 +chr7 126270448 . C T 0 PASS DP=71;GPV=1;SPV=0.00010787;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:27,15:11,9:16,6 +chr7 126819275 . T TACACACACACACACAC 0 PASS DP=70;GPV=1;SPV=0.016864;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,12:13,10:11,2 +chr7 128110674 . A ATGTGTGTGTGTGTGTG 0 PASS DP=46;GPV=1;SPV=0.11302;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:12,3:9,1 +chr7 130138858 . T TG 0 PASS DP=47;GPV=1;SPV=0.0076433;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:10,4:8,3 +chr7 130537779 . C T 0 PASS DP=90;GPV=1;SPV=0.03237;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:35,8:17,3:18,5 +chr7 131634569 . T C 0 PASS DP=21;GPV=1;SPV=0.031674;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:0,4:3,1 +chr7 131828699 . C CT 0 PASS DP=38;GPV=1;SPV=0.042901;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:1,1:10,4 +chr7 132469136 . A G 0 PASS DP=57;GPV=1;SPV=0.090036;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:31,5:14,1:17,4 +chr7 133110986 . A AT 0 PASS DP=40;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:5,5:7,3 +chr7 134728845 . CT C 0 PASS DP=29;GPV=1;SPV=0.049017;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,6:8,3:1,3 +chr7 135778671 . G A 0 PASS DP=68;GPV=1;SPV=0.00042894;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:28,14:14,6:14,8 +chr7 136216482 . A C 0 PASS DP=59;GPV=1;SPV=0.00069152;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:12,6:10,5 +chr7 137153236 . T C 0 PASS DP=45;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,4:5,3:8,1 +chr7 142027018 . G A 0 PASS DP=92;GPV=1;SPV=1.9039e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:18,6:14,8 +chr7 142504164 . C CA 0 PASS DP=94;GPV=1;SPV=0.011694;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:38,14:18,4:20,10 +chr7 143414019 . C G 0 PASS DP=56;GPV=1;SPV=9.708e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:13,17:2,3:11,14 +chr7 143969350 . T A 0 PASS DP=28;GPV=1;SPV=0.15441;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:5,2:0,1:5,1 +chr7 144189461 . A G 0 PASS DP=32;GPV=1;SPV=0.027836;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:10,4:0,0 +chr7 144245406 . C T 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,0:11,4 +chr7 144276614 . G C 0 PASS DP=138;GPV=1;SPV=0.017212;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:58,14:30,3:28,11 +chr7 144960605 . CTT C 0 PASS DP=62;GPV=1;SPV=0.17857;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:2,3:0,1:2,2 +chr7 146031126 . A T 0 PASS DP=75;GPV=1;SPV=6.5721e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:30,19:12,10:18,9 +chr7 148369181 . CTTTTTT C 0 PASS DP=27;GPV=1;SPV=0.03913;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,4:5,1:3,3 +chr7 148502355 . C CA 0 PASS DP=22;GPV=1;SPV=0.014706;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,4:1,3:2,1 +chr7 149220929 . T G 0 PASS DP=60;GPV=1;SPV=0.064526;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:19,1:8,3 +chr7 151437550 . G A 0 PASS DP=91;GPV=1;SPV=5.7714e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:31,16:12,4:19,12 +chr7 151874357 . G A 0 PASS DP=67;GPV=1;SPV=0.11923;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:36,4:26,2:10,2 +chr7 151874429 . TATG T 0 PASS DP=45;GPV=1;SPV=0.0972;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:18,2:6,3 +chr7 151874450 . TATG T 0 PASS DP=44;GPV=1;SPV=0.041933;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:17,2:4,4 +chr7 152411361 . C CT 0 PASS DP=87;GPV=1;SPV=0.0077049;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:14,4:19,7 +chr7 152411367 . C T 0 PASS DP=92;GPV=1;SPV=0.029255;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:39,7:15,2:24,5 +chr7 152770419 . C T 0 PASS DP=71;GPV=1;SPV=0.050539;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:21,4:14,1 +chr7 154157139 . G A 0 PASS DP=109;GPV=1;SPV=0.021727;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:53,13:31,2:22,11 +chr7 154800711 . G A 0 PASS DP=98;GPV=1;SPV=0.00091233;SS=2;SSC=30;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:41,10:14,6:27,4 +chr7 155337547 . G A 0 PASS DP=99;GPV=1;SPV=6.0843e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:17,4:16,7 +chr7 155615496 . A G 0 PASS DP=39;GPV=1;SPV=0.25167;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:13,1:9,2 +chr7 155616708 . G A 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:1,2:5,1 +chr7 156321270 . C CTTCT 0 PASS DP=62;GPV=1;SPV=0.0097922;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,7:8,2:18,5 +chr7 156548362 . C T 0 PASS DP=73;GPV=1;SPV=0.0016791;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:17,4:12,5 +chr7 157648761 . C T 0 PASS DP=31;GPV=1;SPV=0.19021;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,3:11,1 +chr7 158165133 . CAAAG C 0 PASS DP=55;GPV=1;SPV=0.0081402;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:17,10:7,3:10,7 +chr8 94650 . T C 0 PASS DP=33;GPV=1;SPV=0.065325;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,5:3,4:12,1 +chr8 299056 . T A 0 PASS DP=76;GPV=1;SPV=0.046182;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:12,1:19,5 +chr8 625246 . A T 0 PASS DP=87;GPV=1;SPV=0.0020209;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:60:45,15:27,7:18,8 +chr8 3266604 . CA C 0 PASS DP=31;GPV=1;SPV=0.048122;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:7,8:4,7:3,1 +chr8 5057443 . C T 0 PASS DP=54;GPV=1;SPV=0.040404;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:13,4:12,3:1,1 +chr8 6059536 . A AAAAAAAAAAAAAC 0 PASS DP=33;GPV=1;SPV=0.006993;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:0,8:0,4:0,4 +chr8 7219935 . C T 0 PASS DP=69;GPV=1;SPV=0.0017323;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:30,11:16,6:14,5 +chr8 7411399 . C G 0 PASS DP=183;GPV=1;SPV=0.047881;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:87,13:41,3:46,10 +chr8 7413090 . A G 0 PASS DP=44;GPV=1;SPV=0.093185;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:21,4:0,0 +chr8 7413451 . T C 0 PASS DP=196;GPV=1;SPV=0.030614;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:74,17:34,8:40,9 +chr8 7444971 . T G 0 PASS DP=73;GPV=1;SPV=0.00045133;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:24,9:7,5 +chr8 7584732 . C G 0 PASS DP=160;GPV=1;SPV=0.033917;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:81:66,15:32,3:34,12 +chr8 7603062 . G A 0 PASS DP=139;GPV=1;SPV=0.039121;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:74,9:42,4:32,5 +chr8 7615899 . T A 0 PASS DP=91;GPV=1;SPV=0.036261;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:40,7:22,1:18,6 +chr8 7774759 . T C 0 PASS DP=53;GPV=1;SPV=4.9545e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:8,16:1,9:7,7 +chr8 7807920 . ATC A 0 PASS DP=49;GPV=1;SPV=0.013574;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:15,7:3,2 +chr8 8017431 . C G 0 PASS DP=81;GPV=1;SPV=0.0049791;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:8,2:28,11 +chr8 8073044 . T C 0 PASS DP=29;GPV=1;SPV=0.0071032;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:7,11:1,7:6,4 +chr8 8153779 . G A 0 PASS DP=43;GPV=1;SPV=0.02362;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,3:3,1 +chr8 8169112 . G A 0 PASS DP=67;GPV=1;SPV=0.044315;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:25,6:4,1 +chr8 8170515 . C G 0 PASS DP=217;GPV=1;SPV=0.017921;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:125:106,19:57,9:49,10 +chr8 8170820 . C T 0 PASS DP=157;GPV=1;SPV=0.00073289;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:79:64,15:37,9:27,6 +chr8 8204394 . T A 0 PASS DP=173;GPV=1;SPV=0.034513;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:72,19:36,13:36,6 +chr8 11969487 . A ATTTTT 0 PASS DP=38;GPV=1;SPV=0.21475;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:7,1:14,3 +chr8 12117723 . G C 0 PASS DP=99;GPV=1;SPV=0.012991;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:61:44,17:24,5:20,12 +chr8 12176643 . A G 0 PASS DP=111;GPV=1;SPV=0.037547;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:30,6:18,5 +chr8 12419722 . C G 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:2,2:18,2 +chr8 12448115 . G A 0 PASS DP=35;GPV=1;SPV=0.033431;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:0,5:15,1 +chr8 12546522 . C CAA 0 PASS DP=223;GPV=1;SPV=0.037025;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:79,15:53,8:26,7 +chr8 12554173 . T C 0 PASS DP=256;GPV=1;SPV=0.036908;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:131:110,21:69,12:41,9 +chr8 12559473 . C A 0 PASS DP=254;GPV=1;SPV=0.016787;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:147:118,29:44,12:74,17 +chr8 12560294 . T C 0 PASS DP=89;GPV=1;SPV=0.069378;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:41,5:21,2:20,3 +chr8 12570721 . C T 0 PASS DP=312;GPV=1;SPV=0.029464;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:152:127,25:63,14:64,11 +chr8 12579161 . C T 0 PASS DP=293;GPV=1;SPV=0.019813;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:158:133,25:65,11:68,14 +chr8 12584069 . A C 0 PASS DP=268;GPV=1;SPV=0.029589;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:155:126,29:60,16:66,13 +chr8 13143846 . G C 0 PASS DP=64;GPV=1;SPV=0.033467;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:19,8:13,6:6,2 +chr8 13699577 . C T 0 PASS DP=37;GPV=1;SPV=0.51128;SS=2;SSC=2;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:14,4:6,3:8,1 +chr8 15719516 . CCACACACA C 0 PASS DP=66;GPV=1;SPV=0.32967;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:7,4:5,2:2,2 +chr8 16708195 . TAC T 0 PASS DP=35;GPV=1;SPV=0.11976;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:16,5:5,2:11,3 +chr8 17763014 . C T 0 PASS DP=71;GPV=1;SPV=7.814e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:8,15:16,5 +chr8 19655561 . C T 0 PASS DP=59;GPV=1;SPV=0.043229;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:14,5:16,1 +chr8 20030870 . C CTTT 0 PASS DP=40;GPV=1;SPV=0.027424;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,7:7,3:10,4 +chr8 20865118 . TATATATAAAA T 0 PASS DP=24;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:10,4:0,1 +chr8 20875100 . G A 0 PASS DP=75;GPV=1;SPV=6.3971e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:22,20:12,15:10,5 +chr8 22079301 . T TATATATATATATATA 0 PASS DP=29;GPV=1;SPV=0.02037;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:9,5:4,4:5,1 +chr8 22079303 . A AG 0 PASS DP=35;GPV=1;SPV=0.048994;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:8,2:6,3 +chr8 22245096 . C T 0 PASS DP=142;GPV=1;SPV=2.2221e-10;SS=2;SSC=96;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:68:42,26:20,20:22,6 +chr8 22401543 . C CTTTTT 0 PASS DP=28;GPV=1;SPV=0.11304;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,4:3,2:7,2 +chr8 22611406 . A G 0 PASS DP=45;GPV=1;SPV=0.030957;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:5,3:12,2 +chr8 24440959 . T C 0 PASS DP=80;GPV=1;SPV=0.00070294;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:29,9:13,6:16,3 +chr8 25169760 . T TAC 0 PASS DP=69;GPV=1;SPV=0.0076361;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,13:12,9:10,4 +chr8 25410976 . C T 0 PASS DP=21;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,2:1,1:3,1 +chr8 26012319 . G A 0 PASS DP=75;GPV=1;SPV=4.1392e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:26,14:11,12:15,2 +chr8 26113292 . GAA G 0 PASS DP=42;GPV=1;SPV=0.0041486;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:10,11:6,9:4,2 +chr8 26257535 . T C 0 PASS DP=55;GPV=1;SPV=0.0033619;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,9:10,3:9,6 +chr8 26917157 . C CA 0 PASS DP=62;GPV=1;SPV=0.044908;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:18,3:14,3 +chr8 28881794 . C G 0 PASS DP=63;GPV=1;SPV=0.023889;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:19,5:10,1 +chr8 29666136 . C T 0 PASS DP=80;GPV=1;SPV=0.035386;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:13,3:24,2 +chr8 30030807 . AAG A 0 PASS DP=28;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:1,2:1,1:0,1 +chr8 31927439 . CT C 0 PASS DP=29;GPV=1;SPV=0.22085;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:9,2:6,2 +chr8 33245631 . GT G 0 PASS DP=86;GPV=1;SPV=0.0059264;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:39,8:19,3:20,5 +chr8 33537950 . G A 0 PASS DP=101;GPV=1;SPV=0.14555;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:63:25,4:12,1:13,3 +chr8 34824884 . C T 0 PASS DP=30;GPV=1;SPV=0.22727;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:4,2:1,1:3,1 +chr8 35149090 . C A 0 PASS DP=25;GPV=1;SPV=0.04469;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,6:2,5:4,1 +chr8 35404880 . G A 0 PASS DP=79;GPV=1;SPV=1.0708e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:22,12:10,6:12,6 +chr8 35428346 . A ATT 0 PASS DP=31;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:5,3:8,2 +chr8 36134356 . AT A 0 PASS DP=82;GPV=1;SPV=0.00015539;SS=2;SSC=38;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:7,8:26,6 +chr8 36215626 . C T 0 PASS DP=87;GPV=1;SPV=9.7816e-11;SS=2;SSC=100;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:16,22:8,8:8,14 +chr8 36260946 . C A 0 PASS DP=86;GPV=1;SPV=1.2115e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:25,12:11,9:14,3 +chr8 36278286 . C T 0 PASS DP=96;GPV=1;SPV=0.008786;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:39,6:15,3:24,3 +chr8 36525243 . GA G 0 PASS DP=38;GPV=1;SPV=0.14093;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:16,3:4,2 +chr8 39594793 . GTT G 0 PASS DP=37;GPV=1;SPV=0.04958;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:9,8:6,4:3,4 +chr8 40117166 . CTTT C 0 PASS DP=23;GPV=1;SPV=0.11068;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,5:6,2:2,3 +chr8 41887242 . CT C 0 PASS DP=29;GPV=1;SPV=0.028886;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:1,8:8,2 +chr8 42225690 . A G 0 PASS DP=88;GPV=1;SPV=3.7295e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:15,8:17,6 +chr8 44962509 . C A 0 PASS DP=472;GPV=1;SPV=0.0034572;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:239:199,40:90,19:109,21 +chr8 45929132 . G C 0 PASS DP=228;GPV=1;SPV=0.047932;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:134:115,19:81,11:34,8 +chr8 47037598 . C T 0 PASS DP=89;GPV=1;SPV=1.2436e-07;SS=2;SSC=69;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:25,19:13,8:12,11 +chr8 47764017 . G T 0 PASS DP=29;GPV=1;SPV=0.10021;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:11,1:2,3 +chr8 47764018 . T G 0 PASS DP=28;GPV=1;SPV=0.11624;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,1:3,3 +chr8 47999362 . C CT 0 PASS DP=75;GPV=1;SPV=0.0042057;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:13,3:16,4 +chr8 49876663 . G T 0 PASS DP=80;GPV=1;SPV=2.701e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:30,17:17,6:13,11 +chr8 50053623 . T TTGTGTGTG 0 PASS DP=58;GPV=1;SPV=0.033467;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,8:10,2:9,6 +chr8 50693392 . G A 0 PASS DP=75;GPV=1;SPV=2.9903e-06;SS=2;SSC=55;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:23,17:5,4:18,13 +chr8 52535677 . TA T 0 PASS DP=66;GPV=1;SPV=0.0025434;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:15,4:12,5 +chr8 52978238 . T A 0 PASS DP=66;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:19,4:8,3:11,1 +chr8 52989291 . CTTT C 0 PASS DP=39;GPV=1;SPV=0.0084306;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,9:8,5:1,4 +chr8 55855177 . T G 0 PASS DP=67;GPV=1;SPV=0.00065599;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:18,3:5,6 +chr8 57210828 . G C 0 PASS DP=353;GPV=1;SPV=0.0021333;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:183:159,24:105,18:54,6 +chr8 58518952 . CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA C 0 PASS DP=20;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,3:4,2 +chr8 58716687 . T TAAA 0 PASS DP=36;GPV=1;SPV=0.011528;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,7:9,5:4,2 +chr8 60219929 . T TA 0 PASS DP=28;GPV=1;SPV=0.024256;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,8:3,4:4,4 +chr8 60917314 . C CT 0 PASS DP=53;GPV=1;SPV=0.041383;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:24,5:5,3:19,2 +chr8 60928420 . GAA G 0 PASS DP=44;GPV=1;SPV=0.0016018;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:4,10:4,8:0,2 +chr8 60971071 . CTT C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:2,2:8,5 +chr8 65516206 . AT A 0 PASS DP=69;GPV=1;SPV=0.038786;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:32,5:15,2:17,3 +chr8 66355392 . C T 0 PASS DP=83;GPV=1;SPV=6.9149e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:30,13:15,4:15,9 +chr8 66521790 . GGAGAGAGAGAGA G 0 PASS DP=30;GPV=1;SPV=0.062714;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:12,6:6,5:6,1 +chr8 66987287 . CT C 0 PASS DP=37;GPV=1;SPV=0.03735;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:12,6:6,5:6,1 +chr8 67583820 . C T 0 PASS DP=71;GPV=1;SPV=0.015386;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:15,2:7,2 +chr8 67975694 . C CT 0 PASS DP=23;GPV=1;SPV=0.11404;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:4,4:6,1 +chr8 68268026 . G T 0 PASS DP=49;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:7,10:2,3:5,7 +chr8 69258254 . T G 0 PASS DP=18;GPV=1;SPV=0.10294;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:3,2:3,1 +chr8 69853653 . G A 0 PASS DP=76;GPV=1;SPV=0.029803;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:13,7:16,4 +chr8 69873267 . G T 0 PASS DP=66;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:12,4:3,2:9,2 +chr8 71305668 . A T 0 PASS DP=44;GPV=1;SPV=0.048875;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:15,8:6,7:9,1 +chr8 71328691 . G A 0 PASS DP=80;GPV=1;SPV=2.3366e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:12,9:15,5 +chr8 71712677 . A T 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:7,2:4,2 +chr8 73007093 . C CT 0 PASS DP=39;GPV=1;SPV=0.0039926;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,7:7,4:5,3 +chr8 73996368 . CATTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT C 0 PASS DP=48;GPV=1;SPV=0.024823;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,5:5,1:14,4 +chr8 74872603 . G T 0 PASS DP=85;GPV=1;SPV=0.00035827;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:17,8:14,2 +chr8 76922395 . A G 0 PASS DP=25;GPV=1;SPV=0.024348;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,1:4,2 +chr8 77520698 . T A 0 PASS DP=42;GPV=1;SPV=0.46154;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:7,2:3,1:4,1 +chr8 77691448 . T TATATATATATAC 0 PASS DP=33;GPV=1;SPV=0.087179;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:13,5:6,1:7,4 +chr8 78459433 . T TAC 0 PASS DP=34;GPV=1;SPV=0.41667;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,2:2,1:2,1 +chr8 80296492 . T C 0 PASS DP=26;GPV=1;SPV=0.30769;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:6,2:3,1:3,1 +chr8 81908285 . C T 0 PASS DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:15,9:12,7 +chr8 82217222 . G T 0 PASS DP=58;GPV=1;SPV=0.067367;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:16,6:5,1:11,5 +chr8 83384842 . C A 0 PASS DP=42;GPV=1;SPV=0.1733;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:14,1:9,3 +chr8 83614431 . C CTT 0 PASS DP=47;GPV=1;SPV=0.29515;SS=2;SSC=5;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:10,6:2,1:8,5 +chr8 84047207 . TA T 0 PASS DP=21;GPV=1;SPV=0.2;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:1,2:0,0:1,2 +chr8 84112667 . A T 0 PASS DP=84;GPV=1;SPV=4.1518e-06;SS=2;SSC=53;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:13,9:14,7 +chr8 84379753 . C T 0 PASS DP=70;GPV=1;SPV=1.2075e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:16,5:4,8 +chr8 84732683 . T TATATATATATATATATATATACACACAC 0 PASS DP=51;GPV=1;SPV=0.062277;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:24,5:8,3:16,2 +chr8 85190497 . C CT 0 PASS DP=22;GPV=1;SPV=0.051084;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,5:3,3:4,2 +chr8 85805171 . TC T 0 PASS DP=99;GPV=1;SPV=0.028654;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:38,6:20,5:18,1 +chr8 86145349 . AGAAG A 0 PASS DP=29;GPV=1;SPV=0.057471;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:8,3:3,1 +chr8 87707682 . TA T 0 PASS DP=29;GPV=1;SPV=0.17135;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:11,2:5,3 +chr8 88479820 . C A 0 PASS DP=75;GPV=1;SPV=4.0752e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:22,22:9,8:13,14 +chr8 88491755 . G A 0 PASS DP=70;GPV=1;SPV=0.057106;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,3:16,1 +chr8 88701673 . C G 0 PASS DP=61;GPV=1;SPV=0.0021594;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:8,14:4,5:4,9 +chr8 89201130 . A G 0 PASS DP=89;GPV=1;SPV=0.016119;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:40,6:16,4:24,2 +chr8 89359069 . T A 0 PASS DP=80;GPV=1;SPV=0.05154;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:23,5:6,3:17,2 +chr8 91743919 . CA C 0 PASS DP=39;GPV=1;SPV=0.10585;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:20,5:16,3:4,2 +chr8 91761495 . GTTT G 0 PASS DP=50;GPV=1;SPV=0.023126;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:19,9:11,8:8,1 +chr8 92005985 . T TACACACACACACAC 0 PASS DP=51;GPV=1;SPV=0.00084741;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:14,8:6,4:8,4 +chr8 95092578 . CTTT C 0 PASS DP=30;GPV=1;SPV=0.015172;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:4,4:3,2 +chr8 96375594 . A T 0 PASS DP=58;GPV=1;SPV=0.23077;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:5,2:4,1:1,1 +chr8 96663978 . A G 0 PASS DP=85;GPV=1;SPV=5.135e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:27,21:12,8:15,13 +chr8 99906834 . T TTTTC 0 PASS DP=71;GPV=1;SPV=0.049775;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:13,4:15,7 +chr8 101338458 . C CT 0 PASS DP=41;GPV=1;SPV=0.0051722;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,7:6,5:8,2 +chr8 102830650 . CA C 0 PASS DP=57;GPV=1;SPV=0.17271;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,4:20,2:12,2 +chr8 102868226 . C CT 0 PASS DP=54;GPV=1;SPV=0.0035224;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,14:12,7:5,7 +chr8 105514307 . CTTTTTTTTTTTT C 0 PASS DP=20;GPV=1;SPV=0.097902;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:4,4:3,2:1,2 +chr8 105998895 . C CA 0 PASS DP=43;GPV=1;SPV=0.045818;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,8:12,7:5,1 +chr8 106864978 . CTT C 0 PASS DP=27;GPV=1;SPV=0.0219;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:7,5:3,2 +chr8 106953979 . C T 0 PASS DP=38;GPV=1;SPV=0.02381;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:1,4:0,1:1,3 +chr8 108098097 . A AAG 0 PASS DP=37;GPV=1;SPV=0.043422;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:15,4:2,2 +chr8 109311561 . A G 0 PASS DP=39;GPV=1;SPV=0.045738;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:8,2:9,3 +chr8 111010596 . T A 0 PASS DP=23;GPV=1;SPV=0.020124;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:3,4:4,3 +chr8 112279013 . A C 0 PASS DP=62;GPV=1;SPV=0.052464;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:17,5:9,3:8,2 +chr8 112755352 . T C 0 PASS DP=77;GPV=1;SPV=0.0307;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:32,7:15,4:17,3 +chr8 114171555 . C CT 0 PASS DP=71;GPV=1;SPV=0.044221;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,5:24,4:10,1 +chr8 116277942 . G A 0 PASS DP=79;GPV=1;SPV=5.6774e-08;SS=2;SSC=72;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:18,17:12,10:6,7 +chr8 116366086 . A AG 0 PASS DP=29;GPV=1;SPV=0.030303;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:2,4:2,1:0,3 +chr8 116813168 . T TA 0 PASS DP=41;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:4,6:8,2 +chr8 117384014 . A T 0 PASS DP=73;GPV=1;SPV=0.045455;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:2,4:1,2:1,2 +chr8 119162057 . A T 0 PASS DP=39;GPV=1;SPV=0.047124;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:6,1:9,3 +chr8 120055647 . C CT 0 PASS DP=35;GPV=1;SPV=0.0056039;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,9:6,5:6,4 +chr8 120919173 . C CTATA 0 PASS DP=57;GPV=1;SPV=0.0011313;SS=2;SSC=29;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:17,16:7,11:10,5 +chr8 121268067 . A T 0 PASS DP=90;GPV=1;SPV=0.00043374;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:34,10:18,6:16,4 +chr8 121843518 . G A 0 PASS DP=94;GPV=1;SPV=8.3852e-10;SS=2;SSC=90;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:24,27:17,19:7,8 +chr8 124296254 . CA C 0 PASS DP=51;GPV=1;SPV=0.0025397;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:17,12:12,9:5,3 +chr8 124409811 . CAAAAAAAAA C 0 PASS DP=28;GPV=1;SPV=0.083011;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,5:3,4:5,1 +chr8 125502794 . C T 0 PASS DP=38;GPV=1;SPV=0.035819;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:14,5:4,1:10,4 +chr8 126824610 . TTTTG T 0 PASS DP=19;GPV=1;SPV=0.018648;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,5:1,1:2,4 +chr8 127267109 . C CT 0 PASS DP=58;GPV=1;SPV=0.002513;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:24,10:18,8:6,2 +chr8 127528139 . A G 0 PASS DP=48;GPV=1;SPV=0.037605;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:10,1:7,5 +chr8 129014802 . A AACAC 0 PASS DP=49;GPV=1;SPV=0.0075692;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,8:7,5:4,3 +chr8 129877663 . GGT G 0 PASS DP=50;GPV=1;SPV=0.39286;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:9,4:2,2:7,2 +chr8 130041968 . T A 0 PASS DP=66;GPV=1;SPV=0.0055944;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:37:2,7:1,3:1,4 +chr8 131369290 . T A 0 PASS DP=83;GPV=1;SPV=2.0665e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:13,7:11,8 +chr8 131377354 . G GTTTTTTTTTT 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:11,3:6,1 +chr8 131731718 . A G 0 PASS DP=53;GPV=1;SPV=0.065012;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,4:12,3:9,1 +chr8 132155056 . G A 0 PASS DP=76;GPV=1;SPV=1.1019e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:26,17:12,12:14,5 +chr8 132498035 . T TCACACACA 0 PASS DP=43;GPV=1;SPV=0.029799;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:6,9:5,5:1,4 +chr8 132853447 . GTT G 0 PASS DP=64;GPV=1;SPV=0.082408;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,1:16,3 +chr8 133067867 . A G 0 PASS DP=32;GPV=1;SPV=0.041466;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,6:8,3:2,3 +chr8 136066837 . C CT 0 PASS DP=42;GPV=1;SPV=0.036365;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:16,6:5,2 +chr8 136080861 . G A 0 PASS DP=92;GPV=1;SPV=1.8161e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:9,10:18,9 +chr8 137797438 . T C 0 PASS DP=84;GPV=1;SPV=2.0159e-07;SS=2;SSC=66;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:21,16:8,11:13,5 +chr8 140646440 . C CAA 0 PASS DP=54;GPV=1;SPV=0.0085309;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:21,9:18,8:3,1 +chr8 140877025 . CT C 0 PASS DP=22;GPV=1;SPV=0.05418;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,4:3,2:3,2 +chr8 141777461 . G A 0 PASS DP=98;GPV=1;SPV=0.00011358;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:37,12:18,3:19,9 +chr8 141955673 . T TAC 0 PASS DP=73;GPV=1;SPV=0.044156;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:28,4:10,3:18,1 +chr8 142222500 . TCATC T 0 PASS DP=22;GPV=1;SPV=0.028708;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:6,4:2,3:4,1 +chr8 143816728 . C T 0 PASS DP=108;GPV=1;SPV=3.4274e-09;SS=2;SSC=84;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:30,23:15,7:15,16 +chr8 143865501 . G A 0 PASS DP=24;GPV=1;SPV=0.12846;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:0,3:11,1 +chr8 144297901 . A G 0 PASS DP=103;GPV=1;SPV=1.6512e-08;SS=2;SSC=77;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:29,21:14,5:15,16 +chr8 144953029 . T C 0 PASS DP=44;GPV=1;SPV=0.19231;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:4,2:3,1:1,1 +chr9 117800 . G T 0 PASS DP=132;GPV=1;SPV=0.0164;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:66:58,8:30,2:28,6 +chr9 374453 . G T 0 PASS DP=33;GPV=1;SPV=0.031059;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:7,2:1,4 +chr9 954556 . G T 0 PASS DP=70;GPV=1;SPV=2.7838e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:18,19:7,11:11,8 +chr9 1660092 . C T 0 PASS DP=91;GPV=1;SPV=4.8849e-05;SS=2;SSC=43;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:11,7:18,4 +chr9 5080892 . CT C 0 PASS DP=31;GPV=1;SPV=0.0061493;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:10,10:7,7:3,3 +chr9 5131435 . A ATTTTTTTT 0 PASS DP=52;GPV=1;SPV=0.066061;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:28,6:17,4:11,2 +chr9 10065141 . T TAGAAAGAAAGAAAGAAAGAA 0 PASS DP=62;GPV=1;SPV=0.012389;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,8:12,4:11,4 +chr9 10908115 . C T 0 PASS DP=82;GPV=1;SPV=2.1076e-06;SS=2;SSC=56;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:18,10:9,9 +chr9 11546252 . GT G 0 PASS DP=109;GPV=1;SPV=3.0028e-06;SS=2;SSC=55;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:39,17:18,9:21,8 +chr9 12257671 . C A 0 PASS DP=73;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:39:1,3:1,2:0,1 +chr9 12745528 . CTTTTT C 0 PASS DP=20;GPV=1;SPV=0.085139;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:6,3:1,1 +chr9 13981005 . A G 0 PASS DP=62;GPV=1;SPV=0.13232;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,1:20,3 +chr9 14825488 . CAA C 0 PASS DP=20;GPV=1;SPV=0.005418;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:4,6:2,1:2,5 +chr9 17996165 . AT A 0 PASS DP=65;GPV=1;SPV=8.9651e-09;SS=2;SSC=80;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:13,24:11,12:2,12 +chr9 18626806 . TTTC T 0 PASS DP=58;GPV=1;SPV=0.01552;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:6,2:14,5 +chr9 19226767 . C CA 0 PASS DP=27;GPV=1;SPV=0.056522;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:9,4:6,2:3,2 +chr9 20097720 . ATTTTTTTTTTTT A 0 PASS DP=22;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:6,2:4,2 +chr9 22101703 . T C 0 PASS DP=69;GPV=1;SPV=0.029148;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:14,8:4,4:10,4 +chr9 22552406 . G A 0 PASS DP=86;GPV=1;SPV=0.00010628;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:34,14:23,7:11,7 +chr9 24347063 . A T 0 PASS DP=96;GPV=1;SPV=3.4048e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:15,7:17,9 +chr9 25152059 . T TAC 0 PASS DP=59;GPV=1;SPV=0.013373;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,8:9,5:7,3 +chr9 25191113 . A T 0 PASS DP=74;GPV=1;SPV=8.3077e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:16,5:12,10 +chr9 25686026 . C CGTGT 0 PASS DP=63;GPV=1;SPV=0.015574;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,11:13,5:7,6 +chr9 25786770 . G A 0 PASS DP=32;GPV=1;SPV=0.21212;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:4,4:2,3:2,1 +chr9 26037639 . G GCACACACA 0 PASS DP=67;GPV=1;SPV=0.013487;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:10,14:8,9:2,5 +chr9 26296673 . CT C 0 PASS DP=21;GPV=1;SPV=0.01049;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:3,7:0,6:3,1 +chr9 30751042 . T TTA 0 PASS DP=28;GPV=1;SPV=0.028284;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:7,7:4,4:3,3 +chr9 30885030 . C CT 0 PASS DP=43;GPV=1;SPV=0.043511;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,9:14,8:4,1 +chr9 30960417 . T G 0 PASS DP=65;GPV=1;SPV=7.5529e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:16,12:9,6:7,6 +chr9 31513934 . A ATT 0 PASS DP=41;GPV=1;SPV=0.033472;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:15,8:7,3:8,5 +chr9 32224004 . T A 0 PASS DP=73;GPV=1;SPV=0.051282;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:4,4:0,2:4,2 +chr9 32324105 . TA T 0 PASS DP=56;GPV=1;SPV=0.028693;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:10,4:15,6 +chr9 32750824 . AG A 0 PASS DP=57;GPV=1;SPV=0.038941;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:30,7:22,1:8,6 +chr9 34005434 . CA C 0 PASS DP=60;GPV=1;SPV=0.016449;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:18,11:16,8:2,3 +chr9 34725072 . T A 0 PASS DP=91;GPV=1;SPV=0.032223;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:33,9:18,4:15,5 +chr9 36512491 . A AAAATATATATG 0 PASS DP=44;GPV=1;SPV=0.16587;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,6:4,2:7,4 +chr9 36512530 . A ATATATG 0 PASS DP=44;GPV=1;SPV=0.022704;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,10:1,3:5,7 +chr9 37593507 . C CTTT 0 PASS DP=29;GPV=1;SPV=0.014757;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:6,7:5,6:1,1 +chr9 37985881 . C T 0 PASS DP=96;GPV=1;SPV=8.8749e-09;SS=2;SSC=80;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:25,21:7,5:18,16 +chr9 39062770 . T G 0 PASS DP=180;GPV=1;SPV=0.024377;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:79,13:37,5:42,8 +chr9 39077977 . G C 0 PASS DP=85;GPV=1;SPV=0.031136;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:22,5:14,2 +chr9 39078499 . A T 0 PASS DP=144;GPV=1;SPV=0.027105;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:91:72,19:33,10:39,9 +chr9 39082641 . C T 0 PASS DP=144;GPV=1;SPV=0.0033577;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:61,13:40,8:21,5 +chr9 39447377 . C G 0 PASS DP=119;GPV=1;SPV=0.031831;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:62:51,11:26,8:25,3 +chr9 39471618 . A C 0 PASS DP=50;GPV=1;SPV=0.022424;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:7,4:13,5 +chr9 39802183 . C T 0 PASS DP=21;GPV=1;SPV=0.055138;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:7,4:0,0 +chr9 39817969 . A C 0 PASS DP=40;GPV=1;SPV=0.16358;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:2,0:20,4 +chr9 39822306 . G C 0 PASS DP=57;GPV=1;SPV=0.023254;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:3,1:16,5 +chr9 39856617 . C T 0 PASS DP=22;GPV=1;SPV=0.045113;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:0,0:7,4 +chr9 39892865 . T C 0 PASS DP=17;GPV=1;SPV=0.26471;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:7,2:7,1:0,1 +chr9 40199857 . G T 0 PASS DP=90;GPV=1;SPV=0.0028381;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:32,15:25,13:7,2 +chr9 40285602 . A G 0 PASS DP=34;GPV=1;SPV=0.065982;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:14,4:14,4:0,0 +chr9 40335822 . C T 0 PASS DP=36;GPV=1;SPV=0.046295;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr9 40353883 . G C 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:14,4:1,0 +chr9 40649247 . G A 0 PASS DP=20;GPV=1;SPV=0.10217;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:8,4:0,0 +chr9 40721745 . G A 0 PASS DP=106;GPV=1;SPV=0.02489;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:43,11:21,7:22,4 +chr9 40781006 . T C 0 PASS DP=79;GPV=1;SPV=0.049128;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:13,2:21,2 +chr9 40829629 . G A 0 PASS DP=62;GPV=1;SPV=0.00042879;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:7,5:17,8 +chr9 40863176 . C CTT 0 PASS DP=98;GPV=1;SPV=0.0457;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:40,10:17,9:23,1 +chr9 40957019 . C T 0 PASS DP=243;GPV=1;SPV=0.0041396;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:144:120,24:64,14:56,10 +chr9 40957044 . C G 0 PASS DP=274;GPV=1;SPV=0.0025752;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:161:133,27:65,19:68,8 +chr9 40994477 . G A 0 PASS DP=245;GPV=1;SPV=0.049069;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:105,22:46,9:59,13 +chr9 40996429 . C A 0 PASS DP=207;GPV=1;SPV=0.0079392;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:124:97,27:35,7:62,20 +chr9 41009910 . T C 0 PASS DP=185;GPV=1;SPV=0.0011165;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:86,10:40,7:46,3 +chr9 41092878 . G A 0 PASS DP=114;GPV=1;SPV=0.0037018;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:58:42,16:23,10:19,6 +chr9 41219934 . A G 0 PASS DP=227;GPV=1;SPV=0.012217;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:91,23:65,16:26,7 +chr9 41260339 . C G 0 PASS DP=159;GPV=1;SPV=0.027233;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:77:60,17:35,10:25,7 +chr9 41295625 . G T 0 PASS DP=144;GPV=1;SPV=0.046353;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:83:65,18:30,5:35,13 +chr9 41456106 . T C 0 PASS DP=51;GPV=1;SPV=0.0033365;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,11:7,9:7,2 +chr9 41524691 . G A 0 PASS DP=104;GPV=1;SPV=0.03962;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:42,12:24,9:18,3 +chr9 41543438 . A G 0 PASS DP=67;GPV=1;SPV=0.01079;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:18,7:8,5:10,2 +chr9 41619182 . CA C 0 PASS DP=121;GPV=1;SPV=0.023987;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:45,11:26,9:19,2 +chr9 41629752 . G A 0 PASS DP=197;GPV=1;SPV=0.011889;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:106:85,21:49,14:36,7 +chr9 41654836 . G T 0 PASS DP=109;GPV=1;SPV=0.01466;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:44,15:22,4:22,11 +chr9 41754427 . C A 0 PASS DP=189;GPV=1;SPV=0.00039703;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:104:73,31:38,17:35,14 +chr9 41758406 . G C 0 PASS DP=58;GPV=1;SPV=0.015213;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:13,7:10,2 +chr9 41781296 . A C 0 PASS DP=166;GPV=1;SPV=0.026722;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:78,10:46,6:32,4 +chr9 41850515 . C T 0 PASS DP=40;GPV=1;SPV=0.11627;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:0,0:20,4 +chr9 41861347 . G T 0 PASS DP=18;GPV=1;SPV=0.18301;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:6,2:0,0:6,2 +chr9 42030750 . C CAGAGAGAGAGAGAGAGAG 0 PASS DP=36;GPV=1;SPV=0.080745;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:9,4:9,4:0,0 +chr9 42334258 . A G 0 PASS DP=80;GPV=1;SPV=0.046134;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:36,7:16,1:20,6 +chr9 42930756 . G T 0 PASS DP=94;GPV=1;SPV=0.017302;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:47,7:24,4:23,3 +chr9 43299406 . A T 0 PASS DP=161;GPV=1;SPV=0.0099979;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:90:64,18:45,13:19,5 +chr9 43399857 . T C 0 PASS DP=50;GPV=1;SPV=0.13663;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:1,0:26,4 +chr9 43620725 . A T 0 PASS DP=307;GPV=1;SPV=0.045298;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:149:129,20:81,8:48,12 +chr9 43698558 . C G 0 PASS DP=168;GPV=1;SPV=0.037934;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:93:81,12:58,8:23,4 +chr9 43804025 . G A 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:28,4:0,0 +chr9 43804413 . C A 0 PASS DP=80;GPV=1;SPV=0.032961;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:28,11:12,4:16,7 +chr9 43804414 . A C 0 PASS DP=82;GPV=1;SPV=0.018813;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:28,12:13,4:15,8 +chr9 43842933 . A T 0 PASS DP=194;GPV=1;SPV=0.010739;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:96:79,17:24,4:55,13 +chr9 44305562 . T A 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:19,4:1,0 +chr9 44305563 . C A 0 PASS DP=42;GPV=1;SPV=0.11302;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:20,4:1,0 +chr9 44521259 . G T 0 PASS DP=46;GPV=1;SPV=0.065116;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:12,1:8,3 +chr9 44521710 . C T 0 PASS DP=64;GPV=1;SPV=0.012087;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:26,6:11,3:15,3 +chr9 44556710 . A C 0 PASS DP=21;GPV=1;SPV=0.0058007;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:3,8:3,1:0,7 +chr9 44579928 . G T 0 PASS DP=154;GPV=1;SPV=0.022074;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:80:70,10:54,9:16,1 +chr9 44737074 . T C 0 PASS DP=27;GPV=1;SPV=0.047826;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:8,5:0,1 +chr9 45123818 . T G 0 PASS DP=162;GPV=1;SPV=0.034022;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:90,10:49,4:41,6 +chr9 45502833 . G C 0 PASS DP=53;GPV=1;SPV=0.069922;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:23,4:1,0 +chr9 60569052 . T A 0 PASS DP=45;GPV=1;SPV=0.066077;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:22,5:8,3:14,2 +chr9 60638466 . A G 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:18,4:1,0 +chr9 60653336 . G C 0 PASS DP=432;GPV=1;SPV=0.044742;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:219:192,27:8,1:184,26 +chr9 61869465 . TC T 0 PASS DP=87;GPV=1;SPV=0.033522;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:33,6:19,5:14,1 +chr9 62801044 . G C 0 PASS DP=391;GPV=1;SPV=0.0059915;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:202:177,25:87,12:90,13 +chr9 62813372 . A G 0 PASS DP=229;GPV=1;SPV=0.018566;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:123:103,20:56,8:47,12 +chr9 62813624 . T C 0 PASS DP=225;GPV=1;SPV=0.0082734;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:127:111,16:66,12:45,4 +chr9 62821722 . A T 0 PASS DP=221;GPV=1;SPV=0.033791;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:91,17:41,10:50,7 +chr9 62830190 . A T 0 PASS DP=71;GPV=1;SPV=0.021689;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:29,11:8,5:21,6 +chr9 62837642 . G T 0 PASS DP=246;GPV=1;SPV=0.045816;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:120:100,20:50,8:50,12 +chr9 62883872 . A T 0 PASS DP=89;GPV=1;SPV=0.0083664;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:45,9:37,7:8,2 +chr9 62893729 . T C 0 PASS DP=52;GPV=1;SPV=0.1356;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:32,6:9,1:23,5 +chr9 62903251 . G A 0 PASS DP=107;GPV=1;SPV=0.034686;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:65:53,12:27,6:26,6 +chr9 63398809 . G A 0 PASS DP=21;GPV=1;SPV=0.047472;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:0,2:4,2 +chr9 63701977 . G A 0 PASS DP=74;GPV=1;SPV=0.02072;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:34,6:13,3:21,3 +chr9 63756111 . G T 0 PASS DP=141;GPV=1;SPV=0.03921;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:82:69,13:44,7:25,6 +chr9 63759339 . G A 0 PASS DP=199;GPV=1;SPV=0.038714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:99:86,13:32,2:54,11 +chr9 63868480 . G A 0 PASS DP=137;GPV=1;SPV=0.019296;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:56,13:46,9:10,4 +chr9 64025479 . T A 0 PASS DP=89;GPV=1;SPV=0.012169;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:32,14:23,10:9,4 +chr9 64119933 . T A 0 PASS DP=336;GPV=1;SPV=0.0001077;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:166:140,26:50,9:90,17 +chr9 64416413 . G A 0 PASS DP=58;GPV=1;SPV=0.048123;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:30,6:22,4:8,2 +chr9 64436111 . T G 0 PASS DP=81;GPV=1;SPV=0.048085;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:40,13:8,4:32,9 +chr9 64513266 . C T 0 PASS DP=52;GPV=1;SPV=0.0097768;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:14,8:8,2:6,6 +chr9 64598624 . G GTATA 0 PASS DP=63;GPV=1;SPV=0.13232;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:34,4:15,2:19,2 +chr9 64768679 . G T 0 PASS DP=23;GPV=1;SPV=0.037623;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,7:3,2:3,5 +chr9 64788946 . A G 0 PASS DP=200;GPV=1;SPV=0.044279;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:114:96,18:70,12:26,6 +chr9 64907503 . G T 0 PASS DP=31;GPV=1;SPV=0.07564;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:6,2:7,2 +chr9 64910453 . CTTTT C 0 PASS DP=28;GPV=1;SPV=0.048889;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:10,4:7,2:3,2 +chr9 65187717 . A G 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:0,0:8,4 +chr9 65276523 . AT A 0 PASS DP=69;GPV=1;SPV=0.075692;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:37,5:28,4:9,1 +chr9 65276529 . C T 0 PASS DP=65;GPV=1;SPV=0.12149;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:28,3:7,1 +chr9 65276582 . A T 0 PASS DP=54;GPV=1;SPV=0.075047;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:28,5:26,4:2,1 +chr9 65293096 . C T 0 PASS DP=54;GPV=1;SPV=0.047135;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:29,7:10,1:19,6 +chr9 65306269 . G C 0 PASS DP=27;GPV=1;SPV=0.10613;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:3,3:10,2 +chr9 65379043 . G A 0 PASS DP=73;GPV=1;SPV=0.045034;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:32,10:18,9:14,1 +chr9 65573606 . A G 0 PASS DP=75;GPV=1;SPV=0.054338;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:33,4:19,1:14,3 +chr9 65967880 . G T 0 PASS DP=58;GPV=1;SPV=0.012629;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:21,8:5,1:16,7 +chr9 65967881 . C T 0 PASS DP=57;GPV=1;SPV=0.017466;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:4,1:16,6 +chr9 66076158 . C T 0 PASS DP=32;GPV=1;SPV=0.066185;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:13,4:10,3:3,1 +chr9 66079607 . C T 0 PASS DP=215;GPV=1;SPV=0.03446;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:91,18:44,8:47,10 +chr9 66158767 . G C 0 PASS DP=127;GPV=1;SPV=0.047289;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:69:58,11:20,2:38,9 +chr9 66160804 . CA C 0 PASS DP=49;GPV=1;SPV=0.082831;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:21,4:2,0 +chr9 66161100 . C T 0 PASS DP=137;GPV=1;SPV=0.0012909;SS=2;SSC=28;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:75:51,24:32,17:19,7 +chr9 66170499 . C A 0 PASS DP=205;GPV=1;SPV=0.016945;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:108:87,21:52,10:35,11 +chr9 66182996 . T C 0 PASS DP=64;GPV=1;SPV=0.031008;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:31,6:21,2:10,4 +chr9 66197438 . G A 0 PASS DP=104;GPV=1;SPV=0.0048003;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:43,10:22,9:21,1 +chr9 66257253 . G A 0 PASS DP=19;GPV=1;SPV=0.003096;SS=2;SSC=25;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:3,6:2,1:1,5 +chr9 66274253 . T C 0 PASS DP=142;GPV=1;SPV=0.012396;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:65,9:37,3:28,6 +chr9 66697103 . C T 0 PASS DP=79;GPV=1;SPV=0.025558;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:34,11:17,5:17,6 +chr9 66705158 . C CAA 0 PASS DP=37;GPV=1;SPV=0.09062;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:17,4:6,2:11,2 +chr9 66705530 . C T 0 PASS DP=21;GPV=1;SPV=0.063158;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:9:6,3:0,0:6,3 +chr9 66737443 . C T 0 PASS DP=110;GPV=1;SPV=0.019877;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:56:43,13:14,5:29,8 +chr9 66740151 . AAC A 0 PASS DP=44;GPV=1;SPV=0.0143;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:17,6:11,5:6,1 +chr9 66961920 . C G 0 PASS DP=69;GPV=1;SPV=0.00021015;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:26,13:15,6:11,7 +chr9 67008709 . C A 0 PASS DP=42;GPV=1;SPV=0.079112;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:19,4:0,0 +chr9 67010407 . C T 0 PASS DP=31;GPV=1;SPV=0.049571;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:11,8:2,2:9,6 +chr9 67109278 . G C 0 PASS DP=56;GPV=1;SPV=7.6789e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:11,14:4,4:7,10 +chr9 67168505 . T A 0 PASS DP=26;GPV=1;SPV=0.03311;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:4,1:4,3 +chr9 67604241 . G A 0 PASS DP=141;GPV=1;SPV=8.5423e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:72:56,16:17,9:39,7 +chr9 67645801 . G A 0 PASS DP=36;GPV=1;SPV=0.023193;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:1,1:11,7 +chr9 67687829 . A T 0 PASS DP=27;GPV=1;SPV=0.091659;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:1,3:12,3 +chr9 67910316 . G C 0 PASS DP=59;GPV=1;SPV=0.013816;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:18,5:2,2 +chr9 67916278 . T C 0 PASS DP=31;GPV=1;SPV=0.12318;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:15,4:0,0 +chr9 70301415 . G T 0 PASS DP=82;GPV=1;SPV=3.279e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:26,25:11,14:15,11 +chr9 70517355 . TTTTTTTTTGTTTGTTTGTTTG T 0 PASS DP=47;GPV=1;SPV=0.22727;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:4,2:0,0:4,2 +chr9 72606947 . A ATATGTATG 0 PASS DP=54;GPV=1;SPV=0.025544;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:24,11:13,8:11,3 +chr9 73490320 . C T 0 PASS DP=83;GPV=1;SPV=4.219e-08;SS=2;SSC=73;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:19,17:7,9:12,8 +chr9 75495712 . TC T 0 PASS DP=60;GPV=1;SPV=0.35714;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:3,2:1,1:2,1 +chr9 77840230 . T C 0 PASS DP=95;GPV=1;SPV=2.0023e-09;SS=2;SSC=86;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:23,22:10,8:13,14 +chr9 79855857 . C CA 0 PASS DP=46;GPV=1;SPV=0.013657;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:11,6:10,4:1,2 +chr9 80644179 . G A 0 PASS DP=56;GPV=1;SPV=0.018479;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:6,5:4,3:2,2 +chr9 81254683 . CT C 0 PASS DP=41;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:8,5:4,3 +chr9 82847149 . T A 0 PASS DP=78;GPV=1;SPV=0.020423;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:36,6:16,5:20,1 +chr9 83160690 . G A 0 PASS DP=78;GPV=1;SPV=5.7558e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:24,15:16,9:8,6 +chr9 83372369 . C G 0 PASS DP=62;GPV=1;SPV=0.0066382;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:11,5:5,2:6,3 +chr9 84192814 . CTT C 0 PASS DP=53;GPV=1;SPV=0.064826;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:23,4:14,2:9,2 +chr9 85680513 . G A 0 PASS DP=66;GPV=1;SPV=5.765e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:23,15:9,4:14,11 +chr9 86176985 . A C 0 PASS DP=95;GPV=1;SPV=5.6241e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:30,14:17,11:13,3 +chr9 86405912 . A G 0 PASS DP=68;GPV=1;SPV=3.1007e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:20,12:8,7:12,5 +chr9 87430255 . G A 0 PASS DP=28;GPV=1;SPV=0.0035197;SS=2;SSC=24;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,9:6,4:2,5 +chr9 87540183 . CT C 0 PASS DP=30;GPV=1;SPV=0.04735;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:10,7:8,6:2,1 +chr9 87831691 . C G 0 PASS DP=81;GPV=1;SPV=0.038906;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,6:19,4:11,2 +chr9 87853699 . A T 0 PASS DP=70;GPV=1;SPV=0.030612;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:24,7:14,3:10,4 +chr9 88011352 . C CTTTTTT 0 PASS DP=21;GPV=1;SPV=0.031674;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:3,9:0,6:3,3 +chr9 88150465 . G A 0 PASS DP=91;GPV=1;SPV=1.4701e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:23,20:10,7:13,13 +chr9 88589008 . T C 0 PASS DP=74;GPV=1;SPV=2.1205e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:8,8:16,6 +chr9 89182535 . A C 0 PASS DP=52;GPV=1;SPV=0.0092996;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:20,11:11,5:9,6 +chr9 96502595 . T A 0 PASS DP=54;GPV=1;SPV=0.27273;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:4,2:3,1:1,1 +chr9 97772414 . G A 0 PASS DP=107;GPV=1;SPV=3.4237e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:53:37,16:20,8:17,8 +chr9 100932673 . C CTT 0 PASS DP=42;GPV=1;SPV=0.026907;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,8:6,5:6,3 +chr9 102410335 . A C 0 PASS DP=68;GPV=1;SPV=0.0018783;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,8:17,4:8,4 +chr9 102966026 . A ATTT 0 PASS DP=35;GPV=1;SPV=0.06993;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:4,4:3,3:1,1 +chr9 104059407 . A G 0 PASS DP=52;GPV=1;SPV=0.13206;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,7:11,3:9,4 +chr9 104659686 . C CT 0 PASS DP=32;GPV=1;SPV=0.021523;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:12,8:11,6:1,2 +chr9 104995718 . A G 0 PASS DP=35;GPV=1;SPV=0.13971;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:11,2:7,2 +chr9 105485533 . G GT 0 PASS DP=44;GPV=1;SPV=0.052464;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:17,5:8,4:9,1 +chr9 108466081 . T C 0 PASS DP=67;GPV=1;SPV=0.068133;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:24,2:11,3 +chr9 109021507 . G GT 0 PASS DP=79;GPV=1;SPV=0.03863;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:41,6:22,4:19,2 +chr9 109073856 . G GT 0 PASS DP=41;GPV=1;SPV=0.0018191;SS=2;SSC=27;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:9,6:4,3 +chr9 109260410 . CTT C 0 PASS DP=34;GPV=1;SPV=0.13561;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:10,2:3,2 +chr9 110745259 . A C 0 PASS DP=73;GPV=1;SPV=0.011348;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:37,9:18,3:19,6 +chr9 111641320 . T A 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:24,3:11,1 +chr9 115449416 . T C 0 PASS DP=28;GPV=1;SPV=0.026877;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,1:6,6 +chr9 116048961 . G A 0 PASS DP=72;GPV=1;SPV=9.1856e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:19,12:11,9:8,3 +chr9 116088504 . C CAA 0 PASS DP=25;GPV=1;SPV=0.44608;SS=2;SSC=3;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,4:10,4:1,0 +chr9 116656682 . CA C 0 PASS DP=38;GPV=1;SPV=0.0087022;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:8,3:3,2 +chr9 118714270 . C CT 0 PASS DP=63;GPV=1;SPV=0.093615;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:35,5:7,1:28,4 +chr9 118759933 . A AT 0 PASS DP=51;GPV=1;SPV=0.016518;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:24,8:16,5:8,3 +chr9 118846936 . A G 0 PASS DP=74;GPV=1;SPV=0.11013;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:22,4:11,2:11,2 +chr9 118948756 . T A 0 PASS DP=75;GPV=1;SPV=5.3601e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:20,17:13,9:7,8 +chr9 119140426 . A G 0 PASS DP=28;GPV=1;SPV=0.066667;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:11,4:3,2:8,2 +chr9 119172303 . C T 0 PASS DP=69;GPV=1;SPV=7.0959e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,4:12,11 +chr9 119412506 . G A 0 PASS DP=76;GPV=1;SPV=0.0011745;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:10,4:21,6 +chr9 119999714 . A C 0 PASS DP=38;GPV=1;SPV=0.12308;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:5,3:3,1:2,2 +chr9 121228422 . ATATTT A 0 PASS DP=27;GPV=1;SPV=0.028205;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:5,3:3,1 +chr9 121333566 . T TA 0 PASS DP=96;GPV=1;SPV=6.5058e-05;SS=2;SSC=41;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:36,13:15,4:21,9 +chr9 124366088 . A T 0 PASS DP=84;GPV=1;SPV=0.00040604;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:31,10:19,5:12,5 +chr9 126202168 . C T 0 PASS DP=49;GPV=1;SPV=0.0063642;SS=2;SSC=21;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:16,9:4,5:12,4 +chr9 126736711 . A ATATATG 0 PASS DP=28;GPV=1;SPV=0.11832;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:14,5:11,2:3,3 +chr9 126960219 . C CCCTT 0 PASS DP=28;GPV=1;SPV=0.32536;SS=2;SSC=4;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,4:0,0:13,4 +chr9 128818108 . C CAAAAAA 0 PASS DP=53;GPV=1;SPV=0.0027222;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:20,9:15,8:5,1 +chr9 128954419 . C T 0 PASS DP=38;GPV=1;SPV=0.17137;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:21,4:15,2:6,2 +chr9 129393660 . C T 0 PASS DP=39;GPV=1;SPV=0.20979;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:6,4:1,3:5,1 +chr9 129410444 . T TCAC 0 PASS DP=30;GPV=1;SPV=0.021073;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,5:1,4:9,1 +chr9 130062095 . T C 0 PASS DP=65;GPV=1;SPV=0.019651;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:29,6:15,1:14,5 +chr9 130071035 . C CT 0 PASS DP=26;GPV=1;SPV=0.0072239;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:2,5:0,4:2,1 +chr9 130114029 . CT C 0 PASS DP=21;GPV=1;SPV=0.037461;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:5,8:4,7:1,1 +chr9 130753428 . T C 0 PASS DP=42;GPV=1;SPV=0.011329;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:14,9:8,7:6,2 +chr9 131587223 . C A 0 PASS DP=53;GPV=1;SPV=0.27778;SS=2;SSC=5;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:3,2:3,2:0,0 +chr9 131964347 . G C 0 PASS DP=19;GPV=1;SPV=0.01806;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:4,4:2,1:2,3 +chr9 132333394 . AAAAG A 0 PASS DP=42;GPV=1;SPV=0.094934;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,2:9,2 +chr9 132396675 . T G 0 PASS DP=71;GPV=1;SPV=0.18132;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:7,4:2,2:5,2 +chr9 132930587 . C CAA 0 PASS DP=36;GPV=1;SPV=0.1037;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:12,4:11,3:1,1 +chr9 134025267 . C CAG 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:2,4:4,1 +chr9 134513183 . C CT 0 PASS DP=21;GPV=1;SPV=0.039732;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:4,3:2,2 +chr9 135208007 . A G 0 PASS DP=66;GPV=1;SPV=0.13122;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:25,5:13,3:12,2 +chr9 136573344 . G A 0 PASS DP=88;GPV=1;SPV=1.5034e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:24,14:14,5:10,9 +chr9 137517239 . T A 0 PASS DP=18;GPV=1;SPV=0.14706;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:7,3:1,1:6,2 +chr9 138207134 . G A 0 PASS DP=32;GPV=1;SPV=0.20342;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,1:9,3 +chr9 138228081 . C G 0 PASS DP=42;GPV=1;SPV=0.026333;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,8:16,6:4,2 +chrM 12283 . G A 0 PASS DP=14647;GPV=1;SPV=0;SS=2;SSC=255;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:7264:4867,2396:1986,1012:2881,1384 +chrX 2846056 . T TATATATATA 0 PASS DP=18;GPV=1;SPV=0.052941;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,4:3,1:2,3 +chrX 3116325 . G C 0 PASS DP=59;GPV=1;SPV=0.044988;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:17,2:7,2 +chrX 3152301 . G A 0 PASS DP=70;GPV=1;SPV=0.00011765;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:24,12:10,4:14,8 +chrX 3598596 . G A 0 PASS DP=23;GPV=1;SPV=0.059497;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:9,5:5,2:4,3 +chrX 3600513 . G GTGTAAAGTTTCAGTCA 0 PASS DP=16;GPV=1;SPV=0.0006993;SS=2;SSC=31;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:8:0,8:0,5:0,3 +chrX 3685264 . C CT 0 PASS DP=40;GPV=1;SPV=0.046139;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:19,6:6,1:13,5 +chrX 3688872 . TA T 0 PASS DP=64;GPV=1;SPV=0.0042329;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:24,7:14,5:10,2 +chrX 3788573 . A C 0 PASS DP=48;GPV=1;SPV=0.46667;SS=2;SSC=3;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:5,2:1,1:4,1 +chrX 3827170 . A G 0 PASS DP=55;GPV=1;SPV=0.00062132;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:15,16:8,6:7,10 +chrX 4293487 . C T 0 PASS DP=63;GPV=1;SPV=0.034373;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:24,4:13,3:11,1 +chrX 4383022 . CTTTTTTTTTTT C 0 PASS DP=22;GPV=1;SPV=0.13866;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,4:2,3:5,1 +chrX 4942192 . AG A 0 PASS DP=71;GPV=1;SPV=0.07597;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:14,2:20,2 +chrX 4942199 . T C 0 PASS DP=71;GPV=1;SPV=0.07597;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:34,4:16,2:18,2 +chrX 5809652 . G A 0 PASS DP=81;GPV=1;SPV=7.7888e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:26,15:12,9:14,6 +chrX 5832883 . C T 0 PASS DP=41;GPV=1;SPV=0.20553;SS=2;SSC=6;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:11,9:0,4:11,5 +chrX 5847352 . T TAG 0 PASS DP=34;GPV=1;SPV=0.050426;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,5:4,4:9,1 +chrX 6055094 . G A 0 PASS DP=94;GPV=1;SPV=0.00011108;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:33,11:17,5:16,6 +chrX 6510956 . G A 0 PASS DP=83;GPV=1;SPV=6.7349e-06;SS=2;SSC=51;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:24,13:13,7:11,6 +chrX 6900575 . G T 0 PASS DP=49;GPV=1;SPV=0.048243;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:20,7:7,6:13,1 +chrX 7275929 . C CT 0 PASS DP=58;GPV=1;SPV=0.0033651;SS=2;SSC=24;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:18,13:9,8:9,5 +chrX 7279325 . G A 0 PASS DP=50;GPV=1;SPV=0.12;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:7,2:4,1:3,1 +chrX 8388917 . A G 0 PASS DP=47;GPV=1;SPV=0.13316;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:12,1:13,3 +chrX 9411334 . T G 0 PASS DP=267;GPV=1;SPV=0.031284;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:138:119,19:56,12:63,7 +chrX 9792178 . C T 0 PASS DP=53;GPV=1;SPV=0.03024;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:12,2:7,2 +chrX 11320766 . T TAC 0 PASS DP=63;GPV=1;SPV=0.025477;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:21,10:12,5:9,5 +chrX 11323811 . G C 0 PASS DP=75;GPV=1;SPV=1.2794e-07;SS=2;SSC=68;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:20,21:13,9:7,12 +chrX 12773205 . C A 0 PASS DP=90;GPV=1;SPV=1.0504e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:32,16:14,8:18,8 +chrX 14223751 . CA C 0 PASS DP=60;GPV=1;SPV=0.0009678;SS=2;SSC=30;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:21,9:13,2:8,7 +chrX 14422840 . A G 0 PASS DP=59;GPV=1;SPV=0.17135;SS=2;SSC=7;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:16,5:7,4:9,1 +chrX 14823079 . CT C 0 PASS DP=37;GPV=1;SPV=0.010021;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,5:7,4:4,1 +chrX 14839432 . G T 0 PASS DP=84;GPV=1;SPV=3.7594e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:21,15:12,7:9,8 +chrX 17059920 . A G 0 PASS DP=78;GPV=1;SPV=0.019179;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:16,8:9,3 +chrX 17977306 . CT C 0 PASS DP=52;GPV=1;SPV=0.00057277;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:18,11:11,8:7,3 +chrX 18844332 . T G 0 PASS DP=75;GPV=1;SPV=0.062923;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:19,3:20,2 +chrX 19284527 . T C 0 PASS DP=83;GPV=1;SPV=0.00012972;SS=2;SSC=38;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:54:36,18:22,9:14,9 +chrX 21339631 . C T 0 PASS DP=100;GPV=1;SPV=1.4808e-06;SS=2;SSC=58;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:33,17:13,12:20,5 +chrX 21995667 . T TTTTC 0 PASS DP=24;GPV=1;SPV=0.0099161;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:7,7:0,4:7,3 +chrX 22501795 . G A 0 PASS DP=97;GPV=1;SPV=1.4647e-10;SS=2;SSC=98;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:22,25:8,13:14,12 +chrX 22898755 . AT A 0 PASS DP=38;GPV=1;SPV=0.01707;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:6,4:7,1 +chrX 22898764 . A ATTT 0 PASS DP=38;GPV=1;SPV=0.009828;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:13,6:7,4:6,2 +chrX 22983526 . CTA C 0 PASS DP=84;GPV=1;SPV=0.01617;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:36,12:17,6:19,6 +chrX 23400309 . C T 0 PASS DP=78;GPV=1;SPV=1.5419e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:11,9:16,7 +chrX 24709584 . C A 0 PASS DP=82;GPV=1;SPV=0.045829;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:11,2:26,5 +chrX 25045430 . C CA 0 PASS DP=56;GPV=1;SPV=0.037307;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:25,5:14,3:11,2 +chrX 25061948 . CA C 0 PASS DP=39;GPV=1;SPV=0.022127;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:6,2:6,2 +chrX 27705060 . T G 0 PASS DP=63;GPV=1;SPV=0.046007;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:26,4:11,3:15,1 +chrX 27756805 . C T 0 PASS DP=70;GPV=1;SPV=1.9644e-05;SS=2;SSC=47;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:22,14:14,7:8,7 +chrX 27991343 . G A 0 PASS DP=79;GPV=1;SPV=0.00029953;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:31,12:9,6:22,6 +chrX 28839659 . G T 0 PASS DP=83;GPV=1;SPV=5.1149e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:15,12:11,9 +chrX 29142698 . A ATT 0 PASS DP=93;GPV=1;SPV=0.00038469;SS=2;SSC=34;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:30,14:12,9:18,5 +chrX 30652124 . GA G 0 PASS DP=47;GPV=1;SPV=0.010204;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:12,4:9,1:3,3 +chrX 30729345 . C G 0 PASS DP=92;GPV=1;SPV=0.022084;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:39,5:20,2:19,3 +chrX 31816796 . A T 0 PASS DP=34;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:9,3:4,2 +chrX 32885829 . A G 0 PASS DP=48;GPV=1;SPV=0.12206;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:25,4:14,3:11,1 +chrX 33009102 . GTA G 0 PASS DP=25;GPV=1;SPV=0.03028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,5:1,4:7,1 +chrX 33060837 . CA C 0 PASS DP=50;GPV=1;SPV=0.03159;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:17,9:11,8:6,1 +chrX 33432973 . CAAAAAAAAAAAAAAA C 0 PASS DP=21;GPV=1;SPV=0.082707;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:8,4:3,3:5,1 +chrX 34250198 . G A 0 PASS DP=30;GPV=1;SPV=0.025287;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:14:8,6:5,1:3,5 +chrX 34834603 . AAT A 0 PASS DP=36;GPV=1;SPV=0.038747;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,9:8,6:5,3 +chrX 35692244 . ATT A 0 PASS DP=40;GPV=1;SPV=0.23279;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:22,3:5,1:17,2 +chrX 38811924 . T C 0 PASS DP=79;GPV=1;SPV=5.287e-05;SS=2;SSC=42;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:26,12:13,6:13,6 +chrX 40631256 . C T 0 PASS DP=56;GPV=1;SPV=0.095238;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:3,2:1,1:2,1 +chrX 41181436 . T C 0 PASS DP=32;GPV=1;SPV=0.0098934;SS=2;SSC=20;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:9,10:5,7:4,3 +chrX 41299167 . C CT 0 PASS DP=41;GPV=1;SPV=0.10493;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:20,4:11,1:9,3 +chrX 42419349 . AT A 0 PASS DP=73;GPV=1;SPV=7.7636e-06;SS=2;SSC=51;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,14:9,11:12,3 +chrX 44602073 . GTATGTATA G 0 PASS DP=45;GPV=1;SPV=0.10034;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:22,4:14,3:8,1 +chrX 47353997 . C CTTTTCTTTTCT 0 PASS DP=40;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:2,3:17,1 +chrX 47369156 . CTT C 0 PASS DP=43;GPV=1;SPV=0.045694;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:13,6:5,2:8,4 +chrX 48284148 . T G 0 PASS DP=31;GPV=1;SPV=0.091304;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:11,4:9,2:2,2 +chrX 48643108 . CTA C 0 PASS DP=43;GPV=1;SPV=0.040656;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:11,4:4,2 +chrX 49344146 . G T 0 PASS DP=52;GPV=1;SPV=0.11622;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:27,4:27,4:0,0 +chrX 49885042 . C CT 0 PASS DP=33;GPV=1;SPV=0.010718;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:5,9:3,8:2,1 +chrX 51541752 . T C 0 PASS DP=97;GPV=1;SPV=4.3002e-09;SS=2;SSC=83;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:25,22:14,10:11,12 +chrX 52799679 . T C 0 PASS DP=26;GPV=1;SPV=0.024256;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:7,10:1,2:6,8 +chrX 55389535 . C T 0 PASS DP=85;GPV=1;SPV=9.7647e-07;SS=2;SSC=60;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:27,19:14,12:13,7 +chrX 55442043 . T A 0 PASS DP=83;GPV=1;SPV=0.00037848;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:28,9:15,4:13,5 +chrX 58002624 . T A 0 PASS DP=77;GPV=1;SPV=5.3456e-07;SS=2;SSC=62;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:20,16:9,7:11,9 +chrX 58271215 . C T 0 PASS DP=26;GPV=1;SPV=0.036522;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,6:2,1:5,5 +chrX 60450576 . C T 0 PASS DP=36;GPV=1;SPV=0.065801;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:15,4:0,0:15,4 +chrX 63780880 . G C 0 PASS DP=70;GPV=1;SPV=0.031966;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:37,7:16,3:21,4 +chrX 65956050 . T C 0 PASS DP=111;GPV=1;SPV=0.037547;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:59:48,11:22,9:26,2 +chrX 66569122 . G A 0 PASS DP=79;GPV=1;SPV=3.1863e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:25,17:16,8:9,9 +chrX 67300206 . A G 0 PASS DP=93;GPV=1;SPV=3.0955e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:30,21:14,7:16,14 +chrX 70619816 . C CT 0 PASS DP=58;GPV=1;SPV=0.0094403;SS=2;SSC=20;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:22,10:15,8:7,2 +chrX 70647683 . A T 0 PASS DP=93;GPV=1;SPV=4.4308e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:30,20:19,11:11,9 +chrX 70971461 . G A 0 PASS DP=27;GPV=1;SPV=0.14387;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:12,4:10,1:2,3 +chrX 71230854 . A T 0 PASS DP=19;GPV=1;SPV=0.085139;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:7,4:4,1:3,3 +chrX 72453464 . T TAAAG 0 PASS DP=56;GPV=1;SPV=0.0069343;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:14,10:6,6:8,4 +chrX 72710825 . A AT 0 PASS DP=94;GPV=1;SPV=0.033817;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:41,7:23,4:18,3 +chrX 73577343 . T A 0 PASS DP=87;GPV=1;SPV=8.5797e-06;SS=2;SSC=50;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:31,17:16,10:15,7 +chrX 73842797 . C T 0 PASS DP=76;GPV=1;SPV=2.68e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:20,18:9,8:11,10 +chrX 74960268 . C A 0 PASS DP=71;GPV=1;SPV=0.00010649;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:15,10:13,7 +chrX 76209416 . TATATATATCTAC T 0 PASS DP=26;GPV=1;SPV=0.048379;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:11,7:5,5:6,2 +chrX 76549620 . C CT 0 PASS DP=22;GPV=1;SPV=0.12799;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:7,5:3,2:4,3 +chrX 77073861 . G T 0 PASS DP=76;GPV=1;SPV=7.0297e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:15,4:5,5 +chrX 78548854 . C T 0 PASS DP=71;GPV=1;SPV=0.0017066;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:26,8:13,5:13,3 +chrX 79841717 . C A 0 PASS DP=76;GPV=1;SPV=0.00066603;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:29,10:18,3:11,7 +chrX 79915565 . CATATATATAT C 0 PASS DP=21;GPV=1;SPV=0.053922;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,5:1,4:5,1 +chrX 80000132 . CT C 0 PASS DP=40;GPV=1;SPV=0.00058486;SS=2;SSC=32;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:12,11:3,5:9,6 +chrX 80753589 . A T 0 PASS DP=81;GPV=1;SPV=0.033295;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:44,7:21,4:23,3 +chrX 80845891 . C T 0 PASS DP=114;GPV=1;SPV=3.1065e-10;SS=2;SSC=95;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:55:30,25:15,16:15,9 +chrX 81067614 . A T 0 PASS DP=59;GPV=1;SPV=0.11429;SS=2;SSC=9;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:26:1,3:0,1:1,2 +chrX 83187133 . T C 0 PASS DP=66;GPV=1;SPV=3.1572e-09;SS=2;SSC=85;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:11,19:7,2:4,17 +chrX 83517110 . T C 0 PASS DP=77;GPV=1;SPV=0.00058357;SS=2;SSC=32;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:27,9:12,5:15,4 +chrX 84659249 . G A 0 PASS DP=80;GPV=1;SPV=4.5319e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:25,23:8,7:17,16 +chrX 86689156 . A C 0 PASS DP=74;GPV=1;SPV=3.218e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:20,19:9,5:11,14 +chrX 87233876 . T TAC 0 PASS DP=51;GPV=1;SPV=0.059999;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:25,6:12,2:13,4 +chrX 87234360 . TACATATATATTATATATAC T 0 PASS DP=25;GPV=1;SPV=0.02253;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:10:5,5:1,2:4,3 +chrX 87379839 . T A 0 PASS DP=61;GPV=1;SPV=0.15761;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:35,4:21,2:14,2 +chrX 88703648 . GA G 0 PASS DP=42;GPV=1;SPV=0.010344;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:15,6:12,5:3,1 +chrX 88880465 . G A 0 PASS DP=83;GPV=1;SPV=3.3311e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:28,13:14,5:14,8 +chrX 89836645 . C G 0 PASS DP=58;GPV=1;SPV=0.014208;SS=2;SSC=18;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:26,7:14,2:12,5 +chrX 89895899 . A C 0 PASS DP=33;GPV=1;SPV=0.036101;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:13,5:4,3:9,2 +chrX 90257641 . G T 0 PASS DP=63;GPV=1;SPV=0.040635;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:34,7:20,4:14,3 +chrX 90269467 . T TTATA 0 PASS DP=45;GPV=1;SPV=0.20294;SS=2;SSC=6;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:20,4:7,2:13,2 +chrX 90901597 . C A 0 PASS DP=66;GPV=1;SPV=0.0044132;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:33,14:19,8:14,6 +chrX 91065127 . G T 0 PASS DP=43;GPV=1;SPV=0.035066;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:18,6:12,5:6,1 +chrX 91224128 . A AAATAATAAT 0 PASS DP=59;GPV=1;SPV=0.04524;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:36:25,11:13,5:12,6 +chrX 91251493 . T C 0 PASS DP=66;GPV=1;SPV=0.016812;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:10,4:13,5 +chrX 91828120 . CT C 0 PASS DP=44;GPV=1;SPV=0.030178;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:18,10:13,9:5,1 +chrX 91896087 . G T 0 PASS DP=67;GPV=1;SPV=0.00023423;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:29:20,9:10,4:10,5 +chrX 91953315 . C A 0 PASS DP=100;GPV=1;SPV=2.1224e-05;SS=2;SSC=46;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:36,14:19,7:17,7 +chrX 92078122 . T TA 0 PASS DP=67;GPV=1;SPV=2.7081e-05;SS=2;SSC=45;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:22,15:13,8:9,7 +chrX 92566592 . C G 0 PASS DP=58;GPV=1;SPV=0.0049255;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:25,9:9,8:16,1 +chrX 92576041 . T A 0 PASS DP=45;GPV=1;SPV=0.00011056;SS=2;SSC=39;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:5,7:6,3 +chrX 92743454 . GA G 0 PASS DP=69;GPV=1;SPV=0.007358;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:39:31,8:19,6:12,2 +chrX 93419812 . C T 0 PASS DP=78;GPV=1;SPV=3.4423e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:13,6:14,8 +chrX 94795827 . AT A 0 PASS DP=45;GPV=1;SPV=0.021554;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:12,3:5,2 +chrX 96067419 . A C 0 PASS DP=84;GPV=1;SPV=0.00021276;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:35,14:17,9:18,5 +chrX 96434670 . G A 0 PASS DP=85;GPV=1;SPV=2.5666e-07;SS=2;SSC=65;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:27,24:12,8:15,16 +chrX 96837435 . G C 0 PASS DP=50;GPV=1;SPV=0.036825;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:12,8:5,3:7,5 +chrX 98001253 . C A 0 PASS DP=92;GPV=1;SPV=4.7997e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:28,18:15,9:13,9 +chrX 98325244 . G A 0 PASS DP=94;GPV=1;SPV=7.2254e-08;SS=2;SSC=71;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:27,20:16,10:11,10 +chrX 98827187 . A T 0 PASS DP=57;GPV=1;SPV=7.0663e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:16,11:11,6:5,5 +chrX 99552903 . A AATATAT 0 PASS DP=24;GPV=1;SPV=0.018634;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:12:7,5:5,1:2,4 +chrX 99869226 . A T 0 PASS DP=83;GPV=1;SPV=1.3324e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:27,14:13,6:14,8 +chrX 101792604 . CGTGT C 0 PASS DP=54;GPV=1;SPV=0.057743;SS=2;SSC=12;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:14,5:5,3:9,2 +chrX 106200872 . C T 0 PASS DP=77;GPV=1;SPV=6.5488e-05;SS=2;SSC=41;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:13,10:14,3 +chrX 106510355 . T C 0 PASS DP=89;GPV=1;SPV=5.459e-10;SS=2;SSC=92;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:20,24:12,10:8,14 +chrX 107557797 . CTATATA C 0 PASS DP=27;GPV=1;SPV=0.12238;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:1,4:3,2 +chrX 107754072 . C T 0 PASS DP=75;GPV=1;SPV=5.967e-06;SS=2;SSC=52;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:47:26,21:9,13:17,8 +chrX 108343134 . AAT A 0 PASS DP=46;GPV=1;SPV=0.022121;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:19,3:2,4 +chrX 108874131 . G A 0 PASS DP=74;GPV=1;SPV=4.5693e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:21,20:10,9:11,11 +chrX 109753999 . C CAAA 0 PASS DP=54;GPV=1;SPV=0.023496;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,10:17,9:5,1 +chrX 109882816 . C CTT 0 PASS DP=33;GPV=1;SPV=0.085739;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:16,5:8,4:8,1 +chrX 110084379 . T A 0 PASS DP=24;GPV=1;SPV=0.15;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:6,3:3,2:3,1 +chrX 110689604 . A C 0 PASS DP=37;GPV=1;SPV=0.020719;SS=2;SSC=16;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:8,6:4,4:4,2 +chrX 110689606 . C A 0 PASS DP=32;GPV=1;SPV=0.063462;SS=2;SSC=11;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:8,3:5,2:3,1 +chrX 113097201 . C CTTTT 0 PASS DP=36;GPV=1;SPV=0.12418;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:18,4:9,3:9,1 +chrX 113206719 . G T 0 PASS DP=85;GPV=1;SPV=3.3703e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:9,10:18,6 +chrX 113671430 . CAAAA C 0 PASS DP=32;GPV=1;SPV=0.023574;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:18:10,8:8,4:2,4 +chrX 115458659 . CAAGCAAGAAAGAAAGAAAGAAAGAAAGA C 0 PASS DP=52;GPV=1;SPV=0.041892;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:21,7:10,5:11,2 +chrX 115888354 . G A 0 PASS DP=324;GPV=1;SPV=0.048847;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:168:150,18:79,5:71,13 +chrX 116895479 . TC T 0 PASS DP=56;GPV=1;SPV=0.097906;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:28,4:18,1:10,3 +chrX 117369732 . A T 0 PASS DP=82;GPV=1;SPV=3.46e-05;SS=2;SSC=44;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:30,15:18,7:12,8 +chrX 118231918 . AAAGAAGAAG A 0 PASS DP=24;GPV=1;SPV=0.026224;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:13:4,6:0,5:4,1 +chrX 118323949 . A C 0 PASS DP=37;GPV=1;SPV=0.057503;SS=2;SSC=12;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:19,8:12,7:7,1 +chrX 118438797 . G GTTTTTTTTT 0 PASS DP=38;GPV=1;SPV=0.15033;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:24:19,4:11,3:8,1 +chrX 119156971 . CTATATATATATATA C 0 PASS DP=23;GPV=1;SPV=0.16176;SS=2;SSC=7;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:8,4:3,3:5,1 +chrX 120068061 . AC A 0 PASS DP=51;GPV=1;SPV=0.070228;SS=2;SSC=11;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:23,4:13,2:10,2 +chrX 121458402 . G A 0 PASS DP=80;GPV=1;SPV=1.8347e-06;SS=2;SSC=57;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:27,22:12,13:15,9 +chrX 122945234 . TC T 0 PASS DP=42;GPV=1;SPV=0.011012;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:8,7:4,3:4,4 +chrX 123288134 . T C 0 PASS DP=86;GPV=1;SPV=0.010112;SS=2;SSC=19;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:33,8:15,6:18,2 +chrX 123849603 . C CA 0 PASS DP=45;GPV=1;SPV=0.0041602;SS=2;SSC=23;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:10,8:5,7:5,1 +chrX 123864455 . G GT 0 PASS DP=27;GPV=1;SPV=0.10277;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:11,5:7,3:4,2 +chrX 123926466 . C CTT 0 PASS DP=23;GPV=1;SPV=0.13684;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:15:10,4:6,3:4,1 +chrX 124436936 . CTT C 0 PASS DP=44;GPV=1;SPV=0.023031;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:14,8:9,4:5,4 +chrX 125516959 . A T 0 PASS DP=78;GPV=1;SPV=1.5419e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:27,16:14,5:13,11 +chrX 126154797 . C T 0 PASS DP=85;GPV=1;SPV=3.454e-06;SS=2;SSC=54;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:28,17:14,10:14,7 +chrX 126758503 . G C 0 PASS DP=79;GPV=1;SPV=3.2088e-10;SS=2;SSC=94;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:16,26:7,10:9,16 +chrX 126765903 . C T 0 PASS DP=85;GPV=1;SPV=0.00034023;SS=2;SSC=34;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:51:37,14:21,6:16,8 +chrX 127180258 . C A 0 PASS DP=69;GPV=1;SPV=0.032967;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:40:1,10:0,2:1,8 +chrX 127905933 . T TATATATATATATATATATATATATAG 0 PASS DP=43;GPV=1;SPV=0.11947;SS=2;SSC=9;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:9,4:5,3:4,1 +chrX 129053010 . C T 0 PASS DP=77;GPV=1;SPV=0.0007826;SS=2;SSC=31;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:33,12:13,9:20,3 +chrX 129469054 . G A 0 PASS DP=77;GPV=1;SPV=0.00019866;SS=2;SSC=37;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:31,14:14,3:17,11 +chrX 129599286 . C CT 0 PASS DP=53;GPV=1;SPV=0.0029501;SS=2;SSC=25;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,8:11,4:8,4 +chrX 130087798 . G A 0 PASS DP=73;GPV=1;SPV=0.00029546;SS=2;SSC=35;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:25,10:9,3:16,7 +chrX 130335457 . C CA 0 PASS DP=40;GPV=1;SPV=0.047124;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:20:15,4:12,3:3,1 +chrX 130489927 . A C 0 PASS DP=72;GPV=1;SPV=0.046841;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:34,8:15,5:19,3 +chrX 130786650 . G A 0 PASS DP=54;GPV=1;SPV=0.0056253;SS=2;SSC=22;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:30:22,8:10,3:12,5 +chrX 130864313 . C T 0 PASS DP=82;GPV=1;SPV=1.0798e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:29,17:9,8:20,9 +chrX 131117619 . A ATT 0 PASS DP=40;GPV=1;SPV=0.013095;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:17:8,5:8,4:0,1 +chrX 132138750 . T TAATA 0 PASS DP=66;GPV=1;SPV=0.0075277;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:21,13:12,9:9,4 +chrX 133148474 . G A 0 PASS DP=99;GPV=1;SPV=1.5518e-08;SS=2;SSC=78;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:50:28,22:12,7:16,15 +chrX 134950870 . C CT 0 PASS DP=42;GPV=1;SPV=0.0073947;SS=2;SSC=21;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:21:11,10:8,5:3,5 +chrX 137105225 . G T 0 PASS DP=82;GPV=1;SPV=2.6974e-05;SS=2;SSC=45;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:27,13:12,5:15,8 +chrX 137492843 . CT C 0 PASS DP=37;GPV=1;SPV=0.13408;SS=2;SSC=8;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:23:19,4:14,3:5,1 +chrX 137523728 . C T 0 PASS DP=85;GPV=1;SPV=2.5625e-10;SS=2;SSC=95;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:17,23:10,13:7,10 +chrX 139523037 . G A 0 PASS DP=64;GPV=1;SPV=0.00025079;SS=2;SSC=36;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:28:19,9:12,4:7,5 +chrX 141098121 . GTGTATATATATATATATA G 0 PASS DP=56;GPV=1;SPV=0.024419;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:31:17,10:12,5:5,5 +chrX 142287597 . T C 0 PASS DP=71;GPV=1;SPV=1.9669e-07;SS=2;SSC=67;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:41:19,22:12,9:7,13 +chrX 142551074 . A ATATG 0 PASS DP=48;GPV=1;SPV=0.031028;SS=2;SSC=15;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:25:20,5:11,3:9,2 +chrX 143600240 . C CA 0 PASS DP=79;GPV=1;SPV=0.00047367;SS=2;SSC=33;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:42:31,11:13,5:18,6 +chrX 143631629 . A T 0 PASS DP=61;GPV=1;SPV=8.729e-05;SS=2;SSC=40;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:20,13:9,7:11,6 +chrX 144171912 . A G 0 PASS DP=45;GPV=1;SPV=0.036342;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:10,2:11,4 +chrX 144847540 . C T 0 PASS DP=79;GPV=1;SPV=0.0043057;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:36,9:18,5:18,4 +chrX 144848827 . C A 0 PASS DP=74;GPV=1;SPV=1.3393e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:37:23,14:11,7:12,7 +chrX 144878667 . C CT 0 PASS DP=68;GPV=1;SPV=0.0057228;SS=2;SSC=22;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:38:6,16:1,12:5,4 +chrX 145173170 . AAG A 0 PASS DP=46;GPV=1;SPV=0.047988;SS=2;SSC=13;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:26:21,5:10,3:11,2 +chrX 145612584 . C T 0 PASS DP=93;GPV=1;SPV=0.0017437;SS=2;SSC=27;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:48:39,9:20,3:19,6 +chrX 145938390 . A ATGTGTG 0 PASS DP=53;GPV=1;SPV=0.015839;SS=2;SSC=18;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:33:22,11:16,8:6,3 +chrX 146835816 . A G 0 PASS DP=35;GPV=1;SPV=0.14626;SS=2;SSC=8;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,4:13,2:4,2 +chrX 146972101 . G C 0 PASS DP=87;GPV=1;SPV=0.03614;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:52:43,9:26,1:17,8 +chrX 147512886 . TTACACATTGTAATACACATTGCAATACAA T 0 PASS DP=78;GPV=1;SPV=0.036707;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:35:31,4:15,2:16,2 +chrX 147982851 . G A 0 PASS DP=78;GPV=1;SPV=0.00049033;SS=2;SSC=33;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:40:25,15:13,6:12,9 +chrX 148430035 . TATATAATATATAAATATATTATATATTATATAA T 0 PASS DP=34;GPV=1;SPV=0.094639;SS=2;SSC=10;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:22:17,5:6,4:11,1 +chrX 150398367 . G A 0 PASS DP=46;GPV=1;SPV=0.031602;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:27:21,6:13,5:8,1 +chrX 151073038 . ATATG A 0 PASS DP=38;GPV=1;SPV=0.021584;SS=2;SSC=16;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:16:10,4:6,3:4,1 +chrX 151781807 . C T 0 PASS DP=82;GPV=1;SPV=1.5203e-05;SS=2;SSC=48;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:43:28,15:14,9:14,6 +chrX 152074475 . A T 0 PASS DP=82;GPV=1;SPV=0.035714;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 1/1:.:35:0,2:0,0:0,2 +chrX 152127579 . C T 0 PASS DP=80;GPV=1;SPV=4.9813e-07;SS=2;SSC=63;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:44:24,20:14,8:10,12 +chrX 152296703 . C CT 0 PASS DP=55;GPV=1;SPV=0.018989;SS=2;SSC=17;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:21,13:13,10:8,3 +chrX 152808054 . T G 0 PASS DP=92;GPV=1;SPV=3.3869e-07;SS=2;SSC=64;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:49:29,20:18,10:11,10 +chrX 153012235 . G A 0 PASS DP=64;GPV=1;SPV=0.0010185;SS=2;SSC=29;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:32:23,9:14,5:9,4 +chrX 153091352 . T C 0 PASS DP=83;GPV=1;SPV=1.2506e-05;SS=2;SSC=49;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:45:29,16:18,9:11,7 +chrX 153569113 . G A 0 PASS DP=83;GPV=1;SPV=6.8562e-07;SS=2;SSC=61;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:46:26,20:11,10:15,10 +chrX 153619138 . CT C 0 PASS DP=40;GPV=1;SPV=0.034545;SS=2;SSC=14;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:19:10,6:7,1:3,5 +chrX 154191398 . G T 0 PASS DP=19;GPV=1;SPV=0.039732;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:11:6,5:5,2:1,3 +chrY 11137800 . CA C 0 PASS DP=288;GPV=1;SPV=0.011245;SS=2;SSC=19;INDEL;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:156:136,20:67,12:69,8 +chrY 11147115 . A G 0 PASS DP=195;GPV=1;SPV=0.049806;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:88:75,13:30,9:45,4 +chrY 11177613 . G A 0 PASS DP=155;GPV=1;SPV=0.017287;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:73:61,12:44,8:17,4 +chrY 11198115 . A T 0 PASS DP=207;GPV=1;SPV=0.035283;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:109:41,12:14,4:27,8 +chrY 11199942 . T A 0 PASS DP=203;GPV=1;SPV=0.036234;SS=2;SSC=14;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:100:83,17:70,12:13,5 +chrY 11236902 . T G 0 PASS DP=147;GPV=1;SPV=0.019653;SS=2;SSC=17;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:74:61,13:36,7:25,6 +chrY 11403141 . A T 0 PASS DP=68;GPV=1;SPV=0.0272;SS=2;SSC=15;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:34:27,7:12,3:15,4 +chrY 11479240 . G A 0 PASS DP=17;GPV=1;SPV=0.082353;SS=2;SSC=10;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:8:5,3:1,2:4,1 +chrY 56827498 . A G 0 PASS DP=301;GPV=1;SPV=0.0040244;SS=2;SSC=23;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:154:132,22:54,7:78,15 +chrY 56864133 . A G 0 PASS DP=616;GPV=1;SPV=0.0023512;SS=2;SSC=26;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:342:293,49:163,26:130,23 +chrY 56881916 . T C 0 PASS DP=172;GPV=1;SPV=0.043553;SS=2;SSC=13;SOMATIC GT:GQ:DP:AD:ADF:ADR 0/1:.:92:81,11:35,6:46,5