Mercurial > repos > bgruening > agat
annotate test-data/test03.txt @ 3:a6318f87f2cd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit ac954126686882dd6a64cea30070955344901a00
author | bgruening |
---|---|
date | Thu, 15 Feb 2024 15:47:19 +0000 |
parents | e009d8260be2 |
children | e7449b2c14bf |
rev | line source |
---|---|
3
a6318f87f2cd
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit ac954126686882dd6a64cea30070955344901a00
bgruening
parents:
2
diff
changeset
|
1 usage: /home/rlibouba/miniconda3/envs/__agat@1.2.0/bin/agat_sp_compare_two_annotations.pl --gff1 annotation1.gtf --gff2 annotation2.gtf --output ./temp_output |
0
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
2 Results of number of genes from file1 that overlap genes from file2: |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
3 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
4 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
5 | gene@transcript@cds | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
6 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
7 | annotation1.gtf | annotation2.gtf | Number of cases | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
8 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
9 | 1 | 0 | 366 | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
10 | 1 | 1 | 4 | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
11 | 2 | 2 | 3 | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
12 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
13 Number gene in annotation1: 376 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
14 Number gene in annotation2: 10 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
15 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
16 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
17 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
18 | gene@transcript@exon | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
19 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
20 | annotation1.gtf | annotation2.gtf | Number of cases | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
21 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
22 | 1 | 0 | 3 | |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
23 ---------------------------------------------------------------------------------------------- |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
24 Number gene in annotation1: 3 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
25 Number gene in annotation2: 0 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
26 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
27 |
f7c0a0030254
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
bgruening
parents:
diff
changeset
|
28 |