annotate test-data/test09.txt @ 0:f7c0a0030254 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916

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Compute transcript with isoforms if any

Number of gene                               10
Number of transcript                         10
Number of cds                                10
Number of exon                               10
Number of exon in cds                        10
Number gene overlapping                      4
Number of single exon gene                   10
Number of single exon transcript             10
mean transcripts per gene                    1.0
mean cdss per transcript                     1.0
mean exons per transcript                    1.0
mean exons per cds                           1.0
Total gene length                            9795
Total transcript length                      9795
Total cds length                             9795
Total exon length                            9795
mean gene length                             979
mean transcript length                       979
mean cds length                              979
mean exon length                             979
mean cds piece length                        979
% of genome covered by gene                  0.9
% of genome covered by transcript            0.9
% of genome covered by cds                   0.9
% of genome covered by exon                  0.9
Longest gene                                 2415
Longest transcript                           2415
Longest cds                                  2415
Longest exon                                 2415
Longest cds piece                            2415
Shortest gene                                399
Shortest transcript                          399
Shortest cds                                 399
Shortest exon                                399
Shortest cds piece                           399

Re-compute transcript without isoforms asked. We remove shortest isoforms if any

Number of gene                               10
Number of transcript                         10
Number of cds                                10
Number of exon                               10
Number of exon in cds                        10
Number gene overlapping                      4
Number of single exon gene                   10
Number of single exon transcript             10
mean transcripts per gene                    1.0
mean cdss per transcript                     1.0
mean exons per transcript                    1.0
mean exons per cds                           1.0
Total gene length                            9795
Total transcript length                      9795
Total cds length                             9795
Total exon length                            9795
mean gene length                             979
mean transcript length                       979
mean cds length                              979
mean exon length                             979
mean cds piece length                        979
% of genome covered by gene                  0.9
% of genome covered by transcript            0.9
% of genome covered by cds                   0.9
% of genome covered by exon                  0.9
Longest gene                                 2415
Longest transcript                           2415
Longest cds                                  2415
Longest exon                                 2415
Longest cds piece                            2415
Shortest gene                                399
Shortest transcript                          399
Shortest cds                                 399
Shortest exon                                399
Shortest cds piece                           399

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