Mercurial > repos > bgruening > agat

comparison test-data/test09.txt @ 0:f7c0a0030254 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/agat commit 0851e9e6d46223a8233c56f3b0bcf14e19d63916
author bgruening
date Tue, 23 May 2023 13:43:07 +0000
parents
children e009d8260be2
comparison
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-1:000000000000 0:f7c0a0030254
1 --------------------------------------------------------------------------------
2
3 Compute transcript with isoforms if any
4
5 Number of gene 10
6 Number of transcript 10
7 Number of cds 10
8 Number of exon 10
9 Number of exon in cds 10
10 Number gene overlapping 4
11 Number of single exon gene 10
12 Number of single exon transcript 10
13 mean transcripts per gene 1.0
14 mean cdss per transcript 1.0
15 mean exons per transcript 1.0
16 mean exons per cds 1.0
17 Total gene length 9795
18 Total transcript length 9795
19 Total cds length 9795
20 Total exon length 9795
21 mean gene length 979
22 mean transcript length 979
23 mean cds length 979
24 mean exon length 979
25 mean cds piece length 979
26 % of genome covered by gene 0.9
27 % of genome covered by transcript 0.9
28 % of genome covered by cds 0.9
29 % of genome covered by exon 0.9
30 Longest gene 2415
31 Longest transcript 2415
32 Longest cds 2415
33 Longest exon 2415
34 Longest cds piece 2415
35 Shortest gene 399
36 Shortest transcript 399
37 Shortest cds 399
38 Shortest exon 399
39 Shortest cds piece 399
40
41 Re-compute transcript without isoforms asked. We remove shortest isoforms if any
42
43 Number of gene 10
44 Number of transcript 10
45 Number of cds 10
46 Number of exon 10
47 Number of exon in cds 10
48 Number gene overlapping 4
49 Number of single exon gene 10
50 Number of single exon transcript 10
51 mean transcripts per gene 1.0
52 mean cdss per transcript 1.0
53 mean exons per transcript 1.0
54 mean exons per cds 1.0
55 Total gene length 9795
56 Total transcript length 9795
57 Total cds length 9795
58 Total exon length 9795
59 mean gene length 979
60 mean transcript length 979
61 mean cds length 979
62 mean exon length 979
63 mean cds piece length 979
64 % of genome covered by gene 0.9
65 % of genome covered by transcript 0.9
66 % of genome covered by cds 0.9
67 % of genome covered by exon 0.9
68 Longest gene 2415
69 Longest transcript 2415
70 Longest cds 2415
71 Longest exon 2415
72 Longest cds piece 2415
73 Shortest gene 399
74 Shortest transcript 399
75 Shortest cds 399
76 Shortest exon 399
77 Shortest cds piece 399
78
79 --------------------------------------------------------------------------------
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