Mercurial > repos > bgruening > bigwig_to_bedgraph

diff bigwig_to_bedgraph.xml @ 1:0a73ffe34e7d draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit 4eeb2fca815dfe7c173a5937d25f9715621ed66b
author bgruening
date Wed, 22 Oct 2025 07:00:25 +0000
parents 3799012ce2ff
children
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--- a/bigwig_to_bedgraph.xml	Tue Sep 22 04:12:40 2015 -0400
+++ b/bigwig_to_bedgraph.xml	Wed Oct 22 07:00:25 2025 +0000
@@ -1,15 +1,12 @@
-<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0">
+<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.1" profile="24.1">
     <description>
         Convert from bigWig to bedGraph format
     </description>
     <requirements>
-        <requirement type="package" version="312">ucsc_tools</requirement>
+        <requirement type="package" version="482">ucsc-bigwigtobedgraph</requirement>
     </requirements>
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
-    <command><![CDATA[
-        bigWigToBedGraph "${input}" "${output}"
+    <command detect_errors="exit_code"><![CDATA[
+        bigWigToBedGraph '${input}' '${output}'
     ]]></command>
     <inputs>
         <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/>
@@ -34,4 +31,7 @@
 Converts bigWig files to bedGraph format.
 
     ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btq351</citation>
+    </citations>
 </tool>