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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit 4eeb2fca815dfe7c173a5937d25f9715621ed66b
author bgruening
date Wed, 22 Oct 2025 07:00:25 +0000
parents 3799012ce2ff
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<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.1" profile="24.1">
    <description>
        Convert from bigWig to bedGraph format
    </description>
    <requirements>
        <requirement type="package" version="482">ucsc-bigwigtobedgraph</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        bigWigToBedGraph '${input}' '${output}'
    ]]></command>
    <inputs>
        <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/>
    </inputs>
    <outputs>
        <data format="bedgraph" name="output" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="bigWigToBedGraph.bw" ftype="bigwig"/>
            <output name="output" file="bigWigToBedGraph_result1.bedgraph" ftype="bedgraph" />
        </test>
        <test><!-- The following crashes on old binaries of bigWigToBedGraph -->
            <param name="input" value="bigWigToBedGraph_test2.bw" ftype="bigwig"/>
            <output name="output" file="bigWigToBedGraph_result2.bedgraph" ftype="bedgraph" />
        </test>
    </tests>
    <help><![CDATA[

**What it does**

Converts bigWig files to bedGraph format.

    ]]></help>
    <citations>
        <citation type="doi">10.1093/bioinformatics/btq351</citation>
    </citations>
</tool>