Mercurial > repos > bgruening > bigwig_to_bedgraph
changeset 1:0a73ffe34e7d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bigwig_to_bedgraph commit 4eeb2fca815dfe7c173a5937d25f9715621ed66b
| author | bgruening |
|---|---|
| date | Wed, 22 Oct 2025 07:00:25 +0000 |
| parents | 3799012ce2ff |
| children | |
| files | bigwig_to_bedgraph.xml tool_dependencies.xml |
| diffstat | 2 files changed, 7 insertions(+), 13 deletions(-) [+] |
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--- a/bigwig_to_bedgraph.xml Tue Sep 22 04:12:40 2015 -0400 +++ b/bigwig_to_bedgraph.xml Wed Oct 22 07:00:25 2025 +0000 @@ -1,15 +1,12 @@ -<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.0"> +<tool id="bigwig_to_bedgraph" name="bigWigToBedGraph" version="0.1.1" profile="24.1"> <description> Convert from bigWig to bedGraph format </description> <requirements> - <requirement type="package" version="312">ucsc_tools</requirement> + <requirement type="package" version="482">ucsc-bigwigtobedgraph</requirement> </requirements> - <stdio> - <exit_code range="1:" /> - </stdio> - <command><![CDATA[ - bigWigToBedGraph "${input}" "${output}" + <command detect_errors="exit_code"><![CDATA[ + bigWigToBedGraph '${input}' '${output}' ]]></command> <inputs> <param format="bigwig" name="input" type="data" label="bigwig file to convert" help=""/> @@ -34,4 +31,7 @@ Converts bigWig files to bedGraph format. ]]></help> + <citations> + <citation type="doi">10.1093/bioinformatics/btq351</citation> + </citations> </tool>
--- a/tool_dependencies.xml Tue Sep 22 04:12:40 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="ucsc_tools" version="312"> - <repository changeset_revision="2d6bafd63401" name="package_ucsc_tools_312" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>