Mercurial > repos > brigidar > snp_to_bed

changeset 1:c5195904b225 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
changed output to bed format
author brigidar
date Mon, 09 Nov 2015 14:56:21 -0500
parents 9c02f5e8e657
children 8220dba15923
files snp_to_bed.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/snp_to_bed.xml	Wed Oct 07 15:17:51 2015 -0400
+++ b/snp_to_bed.xml	Mon Nov 09 14:56:21 2015 -0500
@@ -1,12 +1,12 @@
-<tool id="snp_to_bed" name="snp location to bed format" version="0.1">
-    <description>removes unwanted column</description>
+<tool id="snp_to_bed" name="snp location to bed format" version="0.3">
+    <description>convert SNP to interval</description>
     <command>
         cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1  </command>
     <inputs>
         <param name="input1" type="data" label="input file"/>
     </inputs>
     <outputs>
-        <data name="out_file1" format="input" metadata_source="input1"/>
+        <data name="out_file1" format="bed" metadata_source="input1"/>
     </outputs>
     <tests>
     </tests>