Mercurial > repos > dereeper > beagle
comparison test-data/filelog.txt @ 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 07:59:19 -0400 |
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1 beagle.jar (r1399) | |
2 Copyright (C) 2014 Brian L. Browning | |
3 Enter "java -jar beagle.jar" for a summary of command line arguments. | |
4 Start time: 10:43 AM CEST on 20 Jul 2018 | |
5 | |
6 Command line: java -Xmx1963m -jar beagle.jar | |
7 gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat | |
8 phase-its=5 | |
9 impute-its=5 | |
10 out=out | |
11 | |
12 reference samples: 0 | |
13 target samples: 257 | |
14 singles: 257 | |
15 duos: 0 | |
16 trios: 0 | |
17 | |
18 Window 1 [ 3:15001183-19992016 ] | |
19 target markers: 3094 | |
20 | |
21 Starting burn-in iterations | |
22 | |
23 Window=1 Iteration=1 | |
24 Time for building model: 5 seconds | |
25 Time for sampling (singles): 5 seconds | |
26 Singles model | |
27 mean edges/level: 21 max edges/level: 39 | |
28 mean edges/node: 1.655 mean count/edge: 24 | |
29 | |
30 Window=1 Iteration=2 | |
31 Time for building model: 4 seconds | |
32 Time for sampling (singles): 5 seconds | |
33 Singles model | |
34 mean edges/level: 23 max edges/level: 46 | |
35 mean edges/node: 1.513 mean count/edge: 22 | |
36 | |
37 Window=1 Iteration=3 | |
38 Time for building model: 7 seconds | |
39 Time for sampling (singles): 6 seconds | |
40 Singles model | |
41 mean edges/level: 25 max edges/level: 52 | |
42 mean edges/node: 1.425 mean count/edge: 21 | |
43 | |
44 Window=1 Iteration=4 | |
45 Time for building model: 4 seconds | |
46 Time for sampling (singles): 7 seconds | |
47 Singles model | |
48 mean edges/level: 27 max edges/level: 51 | |
49 mean edges/node: 1.393 mean count/edge: 19 | |
50 | |
51 Window=1 Iteration=5 | |
52 Time for building model: 4 seconds | |
53 Time for sampling (singles): 5 seconds | |
54 Singles model | |
55 mean edges/level: 28 max edges/level: 57 | |
56 mean edges/node: 1.374 mean count/edge: 18 | |
57 | |
58 Starting phasing iterations | |
59 | |
60 Window=1 Iteration=6 | |
61 Time for building model: 5 seconds | |
62 Time for sampling (singles): 6 seconds | |
63 Singles model | |
64 mean edges/level: 29 max edges/level: 54 | |
65 mean edges/node: 1.349 mean count/edge: 18 | |
66 | |
67 Window=1 Iteration=7 | |
68 Time for building model: 4 seconds | |
69 Time for sampling (singles): 7 seconds | |
70 Singles model | |
71 mean edges/level: 29 max edges/level: 56 | |
72 mean edges/node: 1.362 mean count/edge: 18 | |
73 | |
74 Window=1 Iteration=8 | |
75 Time for building model: 5 seconds | |
76 Time for sampling (singles): 7 seconds | |
77 Singles model | |
78 mean edges/level: 29 max edges/level: 51 | |
79 mean edges/node: 1.346 mean count/edge: 18 | |
80 | |
81 Window=1 Iteration=9 | |
82 Time for building model: 5 seconds | |
83 Time for sampling (singles): 7 seconds | |
84 Singles model | |
85 mean edges/level: 29 max edges/level: 57 | |
86 mean edges/node: 1.352 mean count/edge: 18 | |
87 | |
88 Window=1 Iteration=10 | |
89 Time for building model: 3 seconds | |
90 Time for sampling (singles): 6 seconds | |
91 Singles model | |
92 mean edges/level: 30 max edges/level: 56 | |
93 mean edges/node: 1.340 mean count/edge: 17 | |
94 | |
95 Number of markers: 3094 | |
96 Total time for building model: 46 seconds | |
97 Total time for sampling: 1 minute 2 seconds | |
98 Total run time: 1 minute 53 seconds | |
99 | |
100 End time: 10:45 AM CEST on 20 Jul 2018 | |
101 beagle.jar (r1399) finished |