Mercurial > repos > dereeper > beagle
diff test-data/filelog.txt @ 0:a929ef8dea25 draft default tip
planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 07:59:19 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/filelog.txt Tue Aug 14 07:59:19 2018 -0400 @@ -0,0 +1,101 @@ +beagle.jar (r1399) +Copyright (C) 2014 Brian L. Browning +Enter "java -jar beagle.jar" for a summary of command line arguments. +Start time: 10:43 AM CEST on 20 Jul 2018 + +Command line: java -Xmx1963m -jar beagle.jar + gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat + phase-its=5 + impute-its=5 + out=out + +reference samples: 0 +target samples: 257 + singles: 257 + duos: 0 + trios: 0 + +Window 1 [ 3:15001183-19992016 ] +target markers: 3094 + +Starting burn-in iterations + +Window=1 Iteration=1 +Time for building model: 5 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 21 max edges/level: 39 +mean edges/node: 1.655 mean count/edge: 24 + +Window=1 Iteration=2 +Time for building model: 4 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 23 max edges/level: 46 +mean edges/node: 1.513 mean count/edge: 22 + +Window=1 Iteration=3 +Time for building model: 7 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 25 max edges/level: 52 +mean edges/node: 1.425 mean count/edge: 21 + +Window=1 Iteration=4 +Time for building model: 4 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 27 max edges/level: 51 +mean edges/node: 1.393 mean count/edge: 19 + +Window=1 Iteration=5 +Time for building model: 4 seconds +Time for sampling (singles): 5 seconds +Singles model +mean edges/level: 28 max edges/level: 57 +mean edges/node: 1.374 mean count/edge: 18 + +Starting phasing iterations + +Window=1 Iteration=6 +Time for building model: 5 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 29 max edges/level: 54 +mean edges/node: 1.349 mean count/edge: 18 + +Window=1 Iteration=7 +Time for building model: 4 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 56 +mean edges/node: 1.362 mean count/edge: 18 + +Window=1 Iteration=8 +Time for building model: 5 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 51 +mean edges/node: 1.346 mean count/edge: 18 + +Window=1 Iteration=9 +Time for building model: 5 seconds +Time for sampling (singles): 7 seconds +Singles model +mean edges/level: 29 max edges/level: 57 +mean edges/node: 1.352 mean count/edge: 18 + +Window=1 Iteration=10 +Time for building model: 3 seconds +Time for sampling (singles): 6 seconds +Singles model +mean edges/level: 30 max edges/level: 56 +mean edges/node: 1.340 mean count/edge: 17 + +Number of markers: 3094 +Total time for building model: 46 seconds +Total time for sampling: 1 minute 2 seconds +Total run time: 1 minute 53 seconds + +End time: 10:45 AM CEST on 20 Jul 2018 +beagle.jar (r1399) finished