Mercurial > repos > dereeper > beagle
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author | dereeper |
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date | Tue, 14 Aug 2018 07:59:19 -0400 |
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planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
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1 beagle.jar (r1399) |
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2 Copyright (C) 2014 Brian L. Browning |
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3 Enter "java -jar beagle.jar" for a summary of command line arguments. |
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4 Start time: 10:43 AM CEST on 20 Jul 2018 |
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5 |
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6 Command line: java -Xmx1963m -jar beagle.jar |
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7 gt=/work/GALAXY/galaxy/database/files/071/dataset_71177.dat |
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8 phase-its=5 |
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9 impute-its=5 |
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10 out=out |
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11 |
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12 reference samples: 0 |
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13 target samples: 257 |
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14 singles: 257 |
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15 duos: 0 |
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16 trios: 0 |
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17 |
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18 Window 1 [ 3:15001183-19992016 ] |
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19 target markers: 3094 |
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20 |
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21 Starting burn-in iterations |
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22 |
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23 Window=1 Iteration=1 |
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24 Time for building model: 5 seconds |
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25 Time for sampling (singles): 5 seconds |
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26 Singles model |
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27 mean edges/level: 21 max edges/level: 39 |
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28 mean edges/node: 1.655 mean count/edge: 24 |
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29 |
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30 Window=1 Iteration=2 |
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31 Time for building model: 4 seconds |
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32 Time for sampling (singles): 5 seconds |
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33 Singles model |
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34 mean edges/level: 23 max edges/level: 46 |
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35 mean edges/node: 1.513 mean count/edge: 22 |
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36 |
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37 Window=1 Iteration=3 |
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38 Time for building model: 7 seconds |
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39 Time for sampling (singles): 6 seconds |
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40 Singles model |
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41 mean edges/level: 25 max edges/level: 52 |
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42 mean edges/node: 1.425 mean count/edge: 21 |
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43 |
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44 Window=1 Iteration=4 |
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45 Time for building model: 4 seconds |
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46 Time for sampling (singles): 7 seconds |
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47 Singles model |
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48 mean edges/level: 27 max edges/level: 51 |
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49 mean edges/node: 1.393 mean count/edge: 19 |
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50 |
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51 Window=1 Iteration=5 |
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52 Time for building model: 4 seconds |
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53 Time for sampling (singles): 5 seconds |
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54 Singles model |
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55 mean edges/level: 28 max edges/level: 57 |
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56 mean edges/node: 1.374 mean count/edge: 18 |
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57 |
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58 Starting phasing iterations |
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59 |
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60 Window=1 Iteration=6 |
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61 Time for building model: 5 seconds |
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62 Time for sampling (singles): 6 seconds |
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63 Singles model |
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64 mean edges/level: 29 max edges/level: 54 |
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65 mean edges/node: 1.349 mean count/edge: 18 |
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66 |
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67 Window=1 Iteration=7 |
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68 Time for building model: 4 seconds |
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69 Time for sampling (singles): 7 seconds |
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70 Singles model |
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71 mean edges/level: 29 max edges/level: 56 |
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72 mean edges/node: 1.362 mean count/edge: 18 |
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73 |
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74 Window=1 Iteration=8 |
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75 Time for building model: 5 seconds |
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76 Time for sampling (singles): 7 seconds |
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77 Singles model |
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78 mean edges/level: 29 max edges/level: 51 |
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79 mean edges/node: 1.346 mean count/edge: 18 |
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80 |
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81 Window=1 Iteration=9 |
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82 Time for building model: 5 seconds |
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83 Time for sampling (singles): 7 seconds |
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84 Singles model |
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85 mean edges/level: 29 max edges/level: 57 |
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86 mean edges/node: 1.352 mean count/edge: 18 |
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87 |
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88 Window=1 Iteration=10 |
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89 Time for building model: 3 seconds |
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90 Time for sampling (singles): 6 seconds |
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91 Singles model |
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92 mean edges/level: 30 max edges/level: 56 |
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93 mean edges/node: 1.340 mean count/edge: 17 |
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94 |
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95 Number of markers: 3094 |
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96 Total time for building model: 46 seconds |
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97 Total time for sampling: 1 minute 2 seconds |
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98 Total run time: 1 minute 53 seconds |
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99 |
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100 End time: 10:45 AM CEST on 20 Jul 2018 |
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101 beagle.jar (r1399) finished |