Mercurial > repos > devteam > samtools_flagstat

annotate test-data/samtools_flagstat_out1.txt @ 11:a0d8e49a018c draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_flagstat commit bfe97d9abaf5d56412b48b5a011f1c4337fa5118-dirty
author iuc
date Wed, 12 Nov 2025 12:58:16 +0000
parents fe34990e5ce7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
0072bf593791 Uploaded
devteam
parents: 0
diff changeset
1 200 + 0 in total (QC-passed reads + QC-failed reads)
7
fe34990e5ce7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 3
diff changeset
2 200 + 0 primary
2
0072bf593791 Uploaded
devteam
parents: 0
diff changeset
3 0 + 0 secondary
0072bf593791 Uploaded
devteam
parents: 0
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4 0 + 0 supplementary
0
13c4ad597626 Uploaded tool tarball.
devteam
parents:
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5 0 + 0 duplicates
7
fe34990e5ce7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 3
diff changeset
6 0 + 0 primary duplicates
3
cc61ade70eb8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 2
diff changeset
7 25 + 0 mapped (12.50% : N/A)
7
fe34990e5ce7 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents: 3
diff changeset
8 25 + 0 primary mapped (12.50% : N/A)
2
0072bf593791 Uploaded
devteam
parents: 0
diff changeset
9 200 + 0 paired in sequencing
0072bf593791 Uploaded
devteam
parents: 0
diff changeset
10 100 + 0 read1
0072bf593791 Uploaded
devteam
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11 100 + 0 read2
3
cc61ade70eb8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 2
diff changeset
12 0 + 0 properly paired (0.00% : N/A)
0
13c4ad597626 Uploaded tool tarball.
devteam
parents:
diff changeset
13 0 + 0 with itself and mate mapped
3
cc61ade70eb8 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
iuc
parents: 2
diff changeset
14 25 + 0 singletons (12.50% : N/A)
0
13c4ad597626 Uploaded tool tarball.
devteam
parents:
diff changeset
15 0 + 0 with mate mapped to a different chr
13c4ad597626 Uploaded tool tarball.
devteam
parents:
diff changeset
16 0 + 0 with mate mapped to a different chr (mapQ>=5)